Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128660 | XP_003626310.1 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.03e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128660 | sp|Q53YF3|SPC3B_ARATH | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.42e-100 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128660 | Q2HTM7 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 4.93e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa1128660 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
| Msa0615440 | Msa1128660 | 0.804047 | 2.605031e-49 | -8.615850e-47 |
| Msa0618310 | Msa1128660 | 0.802507 | 5.428931e-49 | -8.615850e-47 |
| Msa0620620 | Msa1128660 | 0.817525 | 3.152341e-52 | -8.615850e-47 |
| Msa0641140 | Msa1128660 | 0.800967 | 1.124004e-48 | -8.615850e-47 |
| Msa0657790 | Msa1128660 | 0.815466 | 9.112168e-52 | -8.615850e-47 |
| Msa0659030 | Msa1128660 | 0.800044 | 1.733744e-48 | -8.615850e-47 |
| Msa0698490 | Msa1128660 | 0.803133 | 4.031553e-49 | -8.615850e-47 |
| Msa0698660 | Msa1128660 | 0.806808 | 6.871413e-50 | -8.615850e-47 |
| Msa0704660 | Msa1128660 | 0.801670 | 8.071708e-49 | -8.615850e-47 |
| Msa0705000 | Msa1128660 | 0.808864 | 2.512119e-50 | -8.615850e-47 |
| Msa0705040 | Msa1128660 | 0.802540 | 5.345438e-49 | -8.615850e-47 |
| Msa0745200 | Msa1128660 | 0.835276 | 1.844219e-56 | -8.615850e-47 |
| Msa0819540 | Msa1128660 | 0.824648 | 7.201781e-54 | -8.615850e-47 |
| Msa0826760 | Msa1128660 | 0.815594 | 8.533778e-52 | -8.615850e-47 |
| Msa0185350 | Msa1128660 | 0.997261 | 1.736258e-239 | -8.615850e-47 |
| Msa0187690 | Msa1128660 | 0.804499 | 2.097683e-49 | -8.615850e-47 |
| Msa0187930 | Msa1128660 | 0.801570 | 8.459574e-49 | -8.615850e-47 |
| Msa0194540 | Msa1128660 | 0.803516 | 3.358497e-49 | -8.615850e-47 |
| Msa1041140 | Msa1128660 | 0.806338 | 8.633539e-50 | -8.615850e-47 |
| Msa1041520 | Msa1128660 | 0.807654 | 4.548783e-50 | -8.615850e-47 |
| Msa1081560 | Msa1128660 | 0.807005 | 6.244410e-50 | -8.615850e-47 |
| Msa1082690 | Msa1128660 | 0.804138 | 2.494302e-49 | -8.615850e-47 |
| Msa1083750 | Msa1128660 | 0.998748 | 3.675096e-275 | -8.615850e-47 |
| Msa0257520 | Msa1128660 | 0.805308 | 1.421189e-49 | -8.615850e-47 |
| Msa0291520 | Msa1128660 | 0.812597 | 3.914263e-51 | -8.615850e-47 |
| Msa1127130 | Msa1128660 | 0.801116 | 1.048139e-48 | -8.615850e-47 |
| Msa1127190 | Msa1128660 | 0.833104 | 6.458090e-56 | -8.615850e-47 |
| Msa1127830 | Msa1128660 | 0.817769 | 2.776735e-52 | -8.615850e-47 |
| Msa1128660 | Msa1131170 | 0.923372 | 2.896319e-89 | -8.615850e-47 |
| Msa1128660 | Msa1166410 | 0.800275 | 1.555616e-48 | -8.615850e-47 |
| Msa1128660 | Msa1206090 | 0.800512 | 1.391967e-48 | -8.615850e-47 |
| Msa1128660 | Msa1206850 | 0.811672 | 6.226817e-51 | -8.615850e-47 |
| Msa1128660 | Msa1257510 | 0.800774 | 1.230983e-48 | -8.615850e-47 |
| Msa1128660 | Msa1282240 | 0.823898 | 1.081075e-53 | -8.615850e-47 |
| Msa1128660 | Msa1329540 | 0.800937 | 1.140316e-48 | -8.615850e-47 |
| Msa1128660 | Msa1362020 | 0.821705 | 3.502920e-53 | -8.615850e-47 |
| Msa1128660 | Msa1363330 | 0.814356 | 1.606253e-51 | -8.615850e-47 |
| Msa1128660 | Msa1386600 | 0.815390 | 9.474361e-52 | -8.615850e-47 |
| Msa1128660 | Msa1442850 | 0.821115 | 4.792584e-53 | -8.615850e-47 |
| Msa0526540 | Msa1128660 | 0.817331 | 3.485881e-52 | -8.615850e-47 |
| Msa0541860 | Msa1128660 | 0.802159 | 6.404645e-49 | -8.615850e-47 |
| Msa0545060 | Msa1128660 | 0.801403 | 9.152115e-49 | -8.615850e-47 |
| Msa0576940 | Msa1128660 | 0.814223 | 1.719135e-51 | -8.615850e-47 |
| Msa0865570 | Msa1128660 | 0.816122 | 6.507795e-52 | -8.615850e-47 |
| Msa0960830 | Msa1128660 | 0.800704 | 1.272311e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128660 | MtrunA17_Chr7g0273011 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 9.50e-124 | 345 |
| Msa1128660 | MtrunA17_Chr3g0087791 | 82.036 | 167 | 30 | 0 | 1 | 167 | 1 | 167 | 4.24e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128660 | AT5G27430.1 | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.45e-101 | 289 |
| Msa1128660 | AT3G05230.1 | 75.449 | 167 | 41 | 0 | 1 | 167 | 1 | 167 | 5.97e-98 | 280 |
| Msa1128660 | AT3G05230.2 | 73.810 | 126 | 33 | 0 | 1 | 126 | 1 | 126 | 2.60e-69 | 206 |
Find 46 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAATAGCTTTCGAATAC+TGG | 0.245072 | 7_3:-80576041 | Msa1128660:three_prime_UTR |
| ACCTGATTCAAGGGTTTCTT+TGG | 0.249498 | 7_3:+80576789 | None:intergenic |
| AAATTCTCTACCACGCAAAT+TGG | 0.318602 | 7_3:+80576310 | None:intergenic |
| AGCATGACACTTAATATTTC+AGG | 0.320278 | 7_3:-80576993 | Msa1128660:CDS |
| AAACTTTGCATGCTCTTTAG+AGG | 0.327720 | 7_3:+80576463 | None:intergenic |
| TGTAGGTGTTGAATATTAAT+TGG | 0.336117 | 7_3:-80578732 | Msa1128660:intron |
| AGACAACCACAAGCAAATTT+CGG | 0.343664 | 7_3:+80576014 | None:intergenic |
| TAAATACCGTTTCATTGATC+AGG | 0.381152 | 7_3:-80576423 | Msa1128660:intron |
| ATCTATCTGTTTGATAAAAG+TGG | 0.408510 | 7_3:+80579001 | None:intergenic |
| AGAAGGAGATGGAGAATTGA+AGG | 0.420356 | 7_3:+80578856 | None:intergenic |
| CTTTATATCCCTTATAGAAA+AGG | 0.421029 | 7_3:+80576151 | None:intergenic |
| ACCAAAGAAACCCTTGAATC+AGG | 0.421703 | 7_3:-80576790 | Msa1128660:intron |
| ATCTGTATTCCCTGGGCAAT+CGG | 0.431457 | 7_3:+80576213 | None:intergenic |
| TAACCGAATGAATGCATTCT+CGG | 0.433139 | 7_3:+80578953 | None:intergenic |
| ATCTCCTTCTGCTCAAGTCC+AGG | 0.434481 | 7_3:-80578843 | Msa1128660:intron |
| TTGCTTTAAAGAAATAGATC+AGG | 0.435046 | 7_3:-80576126 | Msa1128660:three_prime_UTR |
| AATTACCTCGTCGTTACCGT+TGG | 0.465299 | 7_3:+80578696 | None:intergenic |
| ATTACCTCGTCGTTACCGTT+GGG | 0.472005 | 7_3:+80578697 | None:intergenic |
| GTTCACGTGGAACACAAAAC+AGG | 0.477621 | 7_3:-80576955 | Msa1128660:intron |
| AAGGCATCATCTGTATTCCC+TGG | 0.485485 | 7_3:+80576205 | None:intergenic |
| CATACATCATACCTGATTCA+AGG | 0.490102 | 7_3:+80576779 | None:intergenic |
| TCCCTGGGCAATCGGTAACC+TGG | 0.493808 | 7_3:+80576221 | None:intergenic |
| AACTTTGCATGCTCTTTAGA+GGG | 0.517084 | 7_3:+80576464 | None:intergenic |
| AAATATTGCGCTTTGGATGG+TGG | 0.521686 | 7_3:-80576098 | Msa1128660:three_prime_UTR |
| ACTCCGAGAATGCATTCATT+CGG | 0.527592 | 7_3:-80578956 | Msa1128660:exon |
| TGCCAGGTTACCGATTGCCC+AGG | 0.539181 | 7_3:-80576223 | Msa1128660:CDS |
| GGGAATGATACCATCCCAAA+GGG | 0.544276 | 7_3:+80576484 | None:intergenic |
| AATTTAACTTGACCTTGCAC+TGG | 0.545173 | 7_3:-80576292 | Msa1128660:CDS |
| TATATACCTGATCAATGAAA+CGG | 0.547986 | 7_3:+80576417 | None:intergenic |
| GCTGATAAAATAGTAATGCC+AGG | 0.552824 | 7_3:-80576239 | Msa1128660:CDS |
| TGGACTTGAGCAGAAGGAGA+TGG | 0.553502 | 7_3:+80578845 | None:intergenic |
| AGAAAATGTTAGCAAAGCGT+TGG | 0.554899 | 7_3:+80578925 | None:intergenic |
| GAGACCTGGACTTGAGCAGA+AGG | 0.562774 | 7_3:+80578839 | None:intergenic |
| TGGCATAACATGCCAGTGCA+AGG | 0.570110 | 7_3:+80576280 | None:intergenic |
| ATACATCATACCTGATTCAA+GGG | 0.573602 | 7_3:+80576780 | None:intergenic |
| TTACAGATATCCCTTTGGGA+TGG | 0.587335 | 7_3:-80576494 | Msa1128660:intron |
| TGCTTTAAAGAAATAGATCA+GGG | 0.588021 | 7_3:-80576125 | Msa1128660:three_prime_UTR |
| AGGCATCATCTGTATTCCCT+GGG | 0.600588 | 7_3:+80576206 | None:intergenic |
| GCCAGGTTACCGATTGCCCA+GGG | 0.602814 | 7_3:-80576222 | Msa1128660:CDS |
| AGGGAATGATACCATCCCAA+AGG | 0.633639 | 7_3:+80576483 | None:intergenic |
| GGAAATCCGAAATTTGCTTG+TGG | 0.651769 | 7_3:-80576020 | Msa1128660:three_prime_UTR |
| GTGGATAAAGAATTGAAACT+CGG | 0.664027 | 7_3:+80579020 | None:intergenic |
| ATTTACAGTCTCTGTTCACG+TGG | 0.665261 | 7_3:-80576968 | Msa1128660:CDS |
| GTACAGGGAACCAATTTGCG+TGG | 0.675868 | 7_3:-80576320 | Msa1128660:intron |
| ACAACCCAACGGTAACGACG+AGG | 0.716822 | 7_3:-80578701 | Msa1128660:intron |
| TGGTTTCAGAAACAACCCAA+CGG | 0.718343 | 7_3:-80578712 | Msa1128660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTATGTGT+AGG | - | chr7_3:80576280-80576299 | Msa1128660:CDS | 10.0% |
| !!! | TATACTGTTTTTTTTTTTTT+TGG | + | chr7_3:80577463-80577482 | None:intergenic | 10.0% |
| !! | TAAATAATATAAGAGAAAGT+TGG | + | chr7_3:80576834-80576853 | None:intergenic | 15.0% |
| !! | AACTTTCTCTTATATTATTT+AGG | - | chr7_3:80576833-80576852 | Msa1128660:intron | 15.0% |
| !!! | GTTTTTTGCAAATAAATAAA+AGG | + | chr7_3:80577576-80577595 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTGAA+TGG | - | chr7_3:80577961-80577980 | Msa1128660:intron | 15.0% |
| !! | AATAAATAAAAGGAGAGATT+GGG | + | chr7_3:80577566-80577585 | None:intergenic | 20.0% |
| !! | AAATAAATAAAAGGAGAGAT+TGG | + | chr7_3:80577567-80577586 | None:intergenic | 20.0% |
| !! | ATATGATACTCATAATAATG+TGG | + | chr7_3:80577872-80577891 | None:intergenic | 20.0% |
| !! | AATAAAGACAAAAAACTAAG+AGG | + | chr7_3:80578123-80578142 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTGTCTTTATTTC+AGG | - | chr7_3:80578125-80578144 | Msa1128660:intron | 20.0% |
| !!! | TTTAATCGCTTGTTATAAAA+AGG | + | chr7_3:80578340-80578359 | None:intergenic | 20.0% |
| !! | AAATAAAAAAGGCAAAGTTA+AGG | + | chr7_3:80578687-80578706 | None:intergenic | 20.0% |
| !!! | TAACTTTAACCTTTTCTATA+AGG | - | chr7_3:80578869-80578888 | Msa1128660:CDS | 20.0% |
| !!! | AACTTTAACCTTTTCTATAA+GGG | - | chr7_3:80578870-80578889 | Msa1128660:CDS | 20.0% |
| !!! | TTTTCTATAAGGGATATAAA+GGG | - | chr7_3:80578880-80578899 | Msa1128660:CDS | 20.0% |
| ! | ATCTATCTGTTTGATAAAAG+TGG | + | chr7_3:80576031-80576050 | None:intergenic | 25.0% |
| !!! | TGTAGGTGTTGAATATTAAT+TGG | - | chr7_3:80576297-80576316 | Msa1128660:CDS | 25.0% |
| ! | TTACTTTATCCTTATGTCTA+TGG | - | chr7_3:80576517-80576536 | Msa1128660:intron | 25.0% |
| !!! | TAATTGTGTCATTTAAGTTG+TGG | - | chr7_3:80576540-80576559 | Msa1128660:intron | 25.0% |
| ! | ATATACTGTAACATGAATCA+GGG | + | chr7_3:80576572-80576591 | None:intergenic | 25.0% |
| !! | ATGTGATTTTGAATTACTGA+AGG | - | chr7_3:80576653-80576672 | Msa1128660:intron | 25.0% |
| ! | TCCTATATATAAGAGAAAGT+TGG | - | chr7_3:80576747-80576766 | Msa1128660:intron | 25.0% |
| ! | CCTATATATAAGAGAAAGTT+GGG | - | chr7_3:80576748-80576767 | Msa1128660:intron | 25.0% |
| !!! | TATTGGTTCAAAATTTGGAT+CGG | + | chr7_3:80576794-80576813 | None:intergenic | 25.0% |
| !!! | TGATGTATTGGTTCAAAATT+TGG | + | chr7_3:80576799-80576818 | None:intergenic | 25.0% |
| !! | TCTCTTATATTATTTAGGAC+TGG | - | chr7_3:80576838-80576857 | Msa1128660:intron | 25.0% |
| !! | TTATATTATTTAGGACTGGA+GGG | - | chr7_3:80576842-80576861 | Msa1128660:intron | 25.0% |
| ! | CACAATCAGTTGAAAAAATA+AGG | + | chr7_3:80577073-80577092 | None:intergenic | 25.0% |
| !!! | TTAGAAAGTGGGTTATATAA+GGG | - | chr7_3:80577235-80577254 | Msa1128660:intron | 25.0% |
| ! | AACAGTATAATTGTAGAACT+TGG | - | chr7_3:80577474-80577493 | Msa1128660:intron | 25.0% |
| ! | ATAAATAAAAGGAGAGATTG+GGG | + | chr7_3:80577565-80577584 | None:intergenic | 25.0% |
| !!! | CTACATACTTTTTTCAAAGA+TGG | - | chr7_3:80577811-80577830 | Msa1128660:intron | 25.0% |
| ! | TTTATTTCAGGACAAAAGTT+GGG | - | chr7_3:80578137-80578156 | Msa1128660:intron | 25.0% |
| ! | TATATACCTGATCAATGAAA+CGG | + | chr7_3:80578615-80578634 | None:intergenic | 25.0% |
| ! | ATCAGGTATATAACTCTTAT+AGG | - | chr7_3:80578623-80578642 | Msa1128660:intron | 25.0% |
| ! | CAAAAACATTAACATGACAA+AGG | + | chr7_3:80578846-80578865 | None:intergenic | 25.0% |
| ! | CTTTATATCCCTTATAGAAA+AGG | + | chr7_3:80578881-80578900 | None:intergenic | 25.0% |
| !! | CTTTTCTATAAGGGATATAA+AGG | - | chr7_3:80578879-80578898 | Msa1128660:CDS | 25.0% |
| !!! | TTGCTTTAAAGAAATAGATC+AGG | - | chr7_3:80578903-80578922 | Msa1128660:CDS | 25.0% |
| !!! | TGCTTTAAAGAAATAGATCA+GGG | - | chr7_3:80578904-80578923 | Msa1128660:CDS | 25.0% |
| GTGGATAAAGAATTGAAACT+CGG | + | chr7_3:80576012-80576031 | None:intergenic | 30.0% | |
| ACACAATTACCATAGACATA+AGG | + | chr7_3:80576529-80576548 | None:intergenic | 30.0% | |
| CATATACTGTAACATGAATC+AGG | + | chr7_3:80576573-80576592 | None:intergenic | 30.0% | |
| TTCATGTTACAGTATATGCA+AGG | - | chr7_3:80576575-80576594 | Msa1128660:intron | 30.0% | |
| CTATAGTTATAAACTCCATC+CGG | - | chr7_3:80576724-80576743 | Msa1128660:intron | 30.0% | |
| CTTTCTCTTATATATAGGAC+CGG | + | chr7_3:80576746-80576765 | None:intergenic | 30.0% | |
| CCCAACTTTCTCTTATATAT+AGG | + | chr7_3:80576751-80576770 | None:intergenic | 30.0% | |
| TTGGGTCAACAAAAGTTAAT+GGG | - | chr7_3:80576766-80576785 | Msa1128660:intron | 30.0% | |
| ! | ATTGGTTCAAAATTTGGATC+GGG | + | chr7_3:80576793-80576812 | None:intergenic | 30.0% |
| ! | CTTATATTATTTAGGACTGG+AGG | - | chr7_3:80576841-80576860 | Msa1128660:intron | 30.0% |
| TACTACTTATACAGGGTATA+GGG | - | chr7_3:80576870-80576889 | Msa1128660:intron | 30.0% | |
| ! | CTTCTTCATAAGACTCTTTT+TGG | + | chr7_3:80576954-80576973 | None:intergenic | 30.0% |
| GGTATATGACTTCACATATA+AGG | + | chr7_3:80577011-80577030 | None:intergenic | 30.0% | |
| ACATAAACCCTCTTAATCAA+GGG | + | chr7_3:80577120-80577139 | None:intergenic | 30.0% | |
| AACATAAACCCTCTTAATCA+AGG | + | chr7_3:80577121-80577140 | None:intergenic | 30.0% | |
| TGATTAAGAGGGTTTATGTT+AGG | - | chr7_3:80577121-80577140 | Msa1128660:intron | 30.0% | |
| TAACATCTTTCGTAACAATC+TGG | + | chr7_3:80577192-80577211 | None:intergenic | 30.0% | |
| AGATTGTTACGAAAGATGTT+AGG | - | chr7_3:80577191-80577210 | Msa1128660:intron | 30.0% | |
| GATTGTTACGAAAGATGTTA+GGG | - | chr7_3:80577192-80577211 | Msa1128660:intron | 30.0% | |
| TCAGTTGAAAAGTTAGAAAG+TGG | - | chr7_3:80577223-80577242 | Msa1128660:intron | 30.0% | |
| CAGTTGAAAAGTTAGAAAGT+GGG | - | chr7_3:80577224-80577243 | Msa1128660:intron | 30.0% | |
| !! | GTTAGAAAGTGGGTTATATA+AGG | - | chr7_3:80577234-80577253 | Msa1128660:intron | 30.0% |
| ! | GCAATTCTTTCTGTTTTCTA+AGG | - | chr7_3:80577364-80577383 | Msa1128660:intron | 30.0% |
| AGTATAATTGTAGAACTTGG+AGG | - | chr7_3:80577477-80577496 | Msa1128660:intron | 30.0% | |
| GTATAATTGTAGAACTTGGA+GGG | - | chr7_3:80577478-80577497 | Msa1128660:intron | 30.0% | |
| TAAATAAAAGGAGAGATTGG+GGG | + | chr7_3:80577564-80577583 | None:intergenic | 30.0% | |
| AGGAAGATAGTGAAGAAATA+AGG | + | chr7_3:80577598-80577617 | None:intergenic | 30.0% | |
| ACTATCTTCCTTACTAACTA+AGG | - | chr7_3:80577607-80577626 | Msa1128660:intron | 30.0% | |
| TACATCGAATCTTTCAGATT+TGG | + | chr7_3:80577668-80577687 | None:intergenic | 30.0% | |
| ATTTACATACAACAGACAAG+AGG | - | chr7_3:80577718-80577737 | Msa1128660:intron | 30.0% | |
| AAATCATAGCTGGAAATTGT+TGG | - | chr7_3:80577767-80577786 | Msa1128660:intron | 30.0% | |
| AATTGTTGGAAACATCATGT+TGG | - | chr7_3:80577781-80577800 | Msa1128660:intron | 30.0% | |
| GATACTCATAATAATGTGGT+AGG | + | chr7_3:80577868-80577887 | None:intergenic | 30.0% | |
| GACATTGAATATCAGAGAAA+GGG | + | chr7_3:80577927-80577946 | None:intergenic | 30.0% | |
| TGACATTGAATATCAGAGAA+AGG | + | chr7_3:80577928-80577947 | None:intergenic | 30.0% | |
| ATTCGTTGTTCAAACTGAAA+TGG | - | chr7_3:80577990-80578009 | Msa1128660:intron | 30.0% | |
| AGCATGACACTTAATATTTC+AGG | - | chr7_3:80578036-80578055 | Msa1128660:intron | 30.0% | |
| ! | CTTTATTTCAGGACAAAAGT+TGG | - | chr7_3:80578136-80578155 | Msa1128660:intron | 30.0% |
| TTATTTCAGGACAAAAGTTG+GGG | - | chr7_3:80578138-80578157 | Msa1128660:intron | 30.0% | |
| ! | GGAAGAAAGGAAACTAATTT+TGG | - | chr7_3:80578159-80578178 | Msa1128660:intron | 30.0% |
| ATACATCATACCTGATTCAA+GGG | + | chr7_3:80578252-80578271 | None:intergenic | 30.0% | |
| AAGCGATTAAAAGAAAGACA+TGG | - | chr7_3:80578349-80578368 | Msa1128660:intron | 30.0% | |
| AAAGAAAGACATGGTAATAG+TGG | - | chr7_3:80578358-80578377 | Msa1128660:intron | 30.0% | |
| AAGAAAGACATGGTAATAGT+GGG | - | chr7_3:80578359-80578378 | Msa1128660:intron | 30.0% | |
| ! | CATTTTACAGATATCCCTTT+GGG | - | chr7_3:80578531-80578550 | Msa1128660:intron | 30.0% |
| TAAATACCGTTTCATTGATC+AGG | - | chr7_3:80578606-80578625 | Msa1128660:intron | 30.0% | |
| GAATTACCTCAGATTTCTTT+AGG | - | chr7_3:80578661-80578680 | Msa1128660:intron | 30.0% | |
| !!! | TGCCTTTTTTATTTGTGTAC+AGG | - | chr7_3:80578693-80578712 | Msa1128660:intron | 30.0% |
| !!! | GCCTTTTTTATTTGTGTACA+GGG | - | chr7_3:80578694-80578713 | Msa1128660:intron | 30.0% |
| TCCCTGTACACAAATAAAAA+AGG | + | chr7_3:80578698-80578717 | None:intergenic | 30.0% | |
| ! | AAAAAATATTGCGCTTTGGA+TGG | - | chr7_3:80578928-80578947 | Msa1128660:CDS | 30.0% |
| TAACCGAATGAATGCATTCT+CGG | + | chr7_3:80576079-80576098 | None:intergenic | 35.0% | |
| AGAAAATGTTAGCAAAGCGT+TGG | + | chr7_3:80576107-80576126 | None:intergenic | 35.0% | |
| TCTTCCTAGACAATACCATT+GGG | + | chr7_3:80576689-80576708 | None:intergenic | 35.0% | |
| GTTGGGTCAACAAAAGTTAA+TGG | - | chr7_3:80576765-80576784 | Msa1128660:intron | 35.0% | |
| !! | CTCAACAAGAGTTGATGTAT+TGG | + | chr7_3:80576811-80576830 | None:intergenic | 35.0% |
| ! | GGAGTACTACTACTTATACA+GGG | - | chr7_3:80576863-80576882 | Msa1128660:intron | 35.0% |
| CTACTACTTATACAGGGTAT+AGG | - | chr7_3:80576869-80576888 | Msa1128660:intron | 35.0% | |
| TGACTTCACATATAAGGCAA+GGG | + | chr7_3:80577005-80577024 | None:intergenic | 35.0% | |
| ATGACTTCACATATAAGGCA+AGG | + | chr7_3:80577006-80577025 | None:intergenic | 35.0% | |
| TGAAGTCATATACCTTCTGT+TGG | - | chr7_3:80577017-80577036 | Msa1128660:intron | 35.0% | |
| TGCTGAATAAACAGTGTAGT+CGG | - | chr7_3:80577323-80577342 | Msa1128660:intron | 35.0% | |
| ! | ATATATCAAGCACTGTGAAC+CGG | + | chr7_3:80577403-80577422 | None:intergenic | 35.0% |
| TTTGAAAGATACGAGGTCTT+TGG | + | chr7_3:80577526-80577545 | None:intergenic | 35.0% | |
| ! | CTTGTCATTTGAAAGATACG+AGG | + | chr7_3:80577533-80577552 | None:intergenic | 35.0% |
| TCTTCCTTACTAACTAAGGA+AGG | - | chr7_3:80577611-80577630 | Msa1128660:intron | 35.0% | |
| GTAGTTTGACGACTTCTAAT+AGG | + | chr7_3:80577643-80577662 | None:intergenic | 35.0% | |
| ATCGAATCTTTCAGATTTGG+AGG | + | chr7_3:80577665-80577684 | None:intergenic | 35.0% | |
| ATTCGATGTAATTGCTTCAG+AGG | - | chr7_3:80577678-80577697 | Msa1128660:intron | 35.0% | |
| AAACAGGTCAAAATCATAGC+TGG | - | chr7_3:80577757-80577776 | Msa1128660:intron | 35.0% | |
| ACTCATAATAATGTGGTAGG+CGG | + | chr7_3:80577865-80577884 | None:intergenic | 35.0% | |
| ! | TTTTCATTTACCAGCTCGTT+TGG | - | chr7_3:80577899-80577918 | Msa1128660:intron | 35.0% |
| !! | GGAAGCATTATTATTCTTGC+AGG | - | chr7_3:80578011-80578030 | Msa1128660:intron | 35.0% |
| ! | TGCTTCTTTTCTATGCTTTC+AGG | - | chr7_3:80578185-80578204 | Msa1128660:intron | 35.0% |
| CATACATCATACCTGATTCA+AGG | + | chr7_3:80578253-80578272 | None:intergenic | 35.0% | |
| ATCAGGTATGATGTATGCTT+TGG | - | chr7_3:80578256-80578275 | Msa1128660:intron | 35.0% | |
| AGTTGGCAAGCTTCAAATTT+AGG | + | chr7_3:80578317-80578336 | None:intergenic | 35.0% | |
| !! | CGCTTGTTATAAAAAGGAGT+TGG | + | chr7_3:80578334-80578353 | None:intergenic | 35.0% |
| CCAAAGGGATATCTGTAAAA+TGG | + | chr7_3:80578533-80578552 | None:intergenic | 35.0% | |
| ! | CCATTTTACAGATATCCCTT+TGG | - | chr7_3:80578530-80578549 | Msa1128660:intron | 35.0% |
| AACTTTGCATGCTCTTTAGA+GGG | + | chr7_3:80578568-80578587 | None:intergenic | 35.0% | |
| AAACTTTGCATGCTCTTTAG+AGG | + | chr7_3:80578569-80578588 | None:intergenic | 35.0% | |
| TTAAGGCCTAAAGAAATCTG+AGG | + | chr7_3:80578670-80578689 | None:intergenic | 35.0% | |
| AAATTCTCTACCACGCAAAT+TGG | + | chr7_3:80578722-80578741 | None:intergenic | 35.0% | |
| !! | AATTTAACTTGACCTTGCAC+TGG | - | chr7_3:80578737-80578756 | Msa1128660:intron | 35.0% |
| GCCAAAAACTGGAAAAATGT+TGG | - | chr7_3:80578768-80578787 | Msa1128660:intron | 35.0% | |
| ! | GCCAACATTTTTCCAGTTTT+TGG | + | chr7_3:80578772-80578791 | None:intergenic | 35.0% |
| GCTGATAAAATAGTAATGCC+AGG | - | chr7_3:80578790-80578809 | Msa1128660:intron | 35.0% | |
| GGGAAAAAAATATTGCGCTT+TGG | - | chr7_3:80578924-80578943 | Msa1128660:CDS | 35.0% | |
| GAGAAATAGCTTTCGAATAC+TGG | - | chr7_3:80578988-80579007 | Msa1128660:five_prime_UTR | 35.0% | |
| AGACAACCACAAGCAAATTT+CGG | + | chr7_3:80579018-80579037 | None:intergenic | 35.0% | |
| ACTCCGAGAATGCATTCATT+CGG | - | chr7_3:80576073-80576092 | Msa1128660:three_prime_UTR | 40.0% | |
| AGAAGGAGATGGAGAATTGA+AGG | + | chr7_3:80576176-80576195 | None:intergenic | 40.0% | |
| TGGTTTCAGAAACAACCCAA+CGG | - | chr7_3:80576317-80576336 | Msa1128660:CDS | 40.0% | |
| AATCCCCAATGGTATTGTCT+AGG | - | chr7_3:80576682-80576701 | Msa1128660:intron | 40.0% | |
| CTTCCTAGACAATACCATTG+GGG | + | chr7_3:80576688-80576707 | None:intergenic | 40.0% | |
| CTCTTCCTAGACAATACCAT+TGG | + | chr7_3:80576690-80576709 | None:intergenic | 40.0% | |
| CTCTTATATATAGGACCGGA+TGG | + | chr7_3:80576742-80576761 | None:intergenic | 40.0% | |
| !! | GGGAGTACTACTACTTATAC+AGG | - | chr7_3:80576862-80576881 | Msa1128660:intron | 40.0% |
| TACAGGGTATAGGGTATGAA+AGG | - | chr7_3:80576879-80576898 | Msa1128660:intron | 40.0% | |
| ACCACAACCCTTGATTAAGA+GGG | - | chr7_3:80577110-80577129 | Msa1128660:intron | 40.0% | |
| TTATGTTAGGCGAAAGAAGC+AGG | - | chr7_3:80577134-80577153 | Msa1128660:intron | 40.0% | |
| ! | CGGATGGTACCTTGTATTTT+GGG | - | chr7_3:80577273-80577292 | Msa1128660:intron | 40.0% |
| AGGAATGCTCCCAAAATACA+AGG | + | chr7_3:80577285-80577304 | None:intergenic | 40.0% | |
| !!! | TATTTTGGGAGCATTCCTGT+GGG | - | chr7_3:80577287-80577306 | Msa1128660:intron | 40.0% |
| CTCTCCTTCCTTAGTTAGTA+AGG | + | chr7_3:80577618-80577637 | None:intergenic | 40.0% | |
| TACTTGTGTGTGCATGAAAC+AGG | - | chr7_3:80577741-80577760 | Msa1128660:intron | 40.0% | |
| ATTTACAGTCTCTGTTCACG+TGG | - | chr7_3:80578061-80578080 | Msa1128660:intron | 40.0% | |
| ACCAAAGAAACCCTTGAATC+AGG | - | chr7_3:80578239-80578258 | Msa1128660:intron | 40.0% | |
| ACCTGATTCAAGGGTTTCTT+TGG | + | chr7_3:80578243-80578262 | None:intergenic | 40.0% | |
| !! | AAGACATGGTAATAGTGGGT+TGG | - | chr7_3:80578363-80578382 | Msa1128660:intron | 40.0% |
| !! | TGCTGCATTTCTGTCACTTT+CGG | - | chr7_3:80578469-80578488 | Msa1128660:intron | 40.0% |
| ! | TTACAGATATCCCTTTGGGA+TGG | - | chr7_3:80578535-80578554 | Msa1128660:intron | 40.0% |
| TGGCATGTTATGCCAAAAAC+TGG | - | chr7_3:80578757-80578776 | Msa1128660:intron | 40.0% | |
| ! | AAATATTGCGCTTTGGATGG+TGG | - | chr7_3:80578931-80578950 | Msa1128660:CDS | 40.0% |
| ! | GGAAATCCGAAATTTGCTTG+TGG | - | chr7_3:80579009-80579028 | Msa1128660:five_prime_UTR | 40.0% |
| GAAAGAGAAGAGAAGAGACC+TGG | + | chr7_3:80576207-80576226 | None:intergenic | 45.0% | |
| ATTACCTCGTCGTTACCGTT+GGG | + | chr7_3:80576335-80576354 | None:intergenic | 45.0% | |
| AATTACCTCGTCGTTACCGT+TGG | + | chr7_3:80576336-80576355 | None:intergenic | 45.0% | |
| ! | GAAGGAGTGTAAATCCCCAA+TGG | - | chr7_3:80576671-80576690 | Msa1128660:intron | 45.0% |
| CTTCCTTGAGCACTATGGAA+GGG | + | chr7_3:80576913-80576932 | None:intergenic | 45.0% | |
| CTTCCATAGTGCTCAAGGAA+GGG | - | chr7_3:80576912-80576931 | Msa1128660:intron | 45.0% | |
| AGGAAGGGTAGTATGTGATG+TGG | - | chr7_3:80576927-80576946 | Msa1128660:intron | 45.0% | |
| GACCACAACCCTTGATTAAG+AGG | - | chr7_3:80577109-80577128 | Msa1128660:intron | 45.0% | |
| ACCCTCTTAATCAAGGGTTG+TGG | + | chr7_3:80577114-80577133 | None:intergenic | 45.0% | |
| GCGAAAGAAGCAGGTTACAA+GGG | - | chr7_3:80577143-80577162 | Msa1128660:intron | 45.0% | |
| AAGGGAAGTTACCAAGAGAG+CGG | - | chr7_3:80577253-80577272 | Msa1128660:intron | 45.0% | |
| ! | GCGGATGGTACCTTGTATTT+TGG | - | chr7_3:80577272-80577291 | Msa1128660:intron | 45.0% |
| !!! | GTATTTTGGGAGCATTCCTG+TGG | - | chr7_3:80577286-80577305 | Msa1128660:intron | 45.0% |
| CTAAGGCCAGTTCTATTCAC+CGG | - | chr7_3:80577381-80577400 | Msa1128660:intron | 45.0% | |
| TGTGAACCGGTGAATAGAAC+TGG | + | chr7_3:80577390-80577409 | None:intergenic | 45.0% | |
| CACAGTTATACTGCTTGGGA+AGG | + | chr7_3:80577437-80577456 | None:intergenic | 45.0% | |
| CTTCCCAAGCAGTATAACTG+TGG | - | chr7_3:80577435-80577454 | Msa1128660:intron | 45.0% | |
| GCTCCACAGTTATACTGCTT+GGG | + | chr7_3:80577441-80577460 | None:intergenic | 45.0% | |
| AGATACGAGGTCTTTGGCTA+GGG | + | chr7_3:80577520-80577539 | None:intergenic | 45.0% | |
| AAGATACGAGGTCTTTGGCT+AGG | + | chr7_3:80577521-80577540 | None:intergenic | 45.0% | |
| TAAAAGGAGAGATTGGGGGA+AGG | + | chr7_3:80577560-80577579 | None:intergenic | 45.0% | |
| GTTCACGTGGAACACAAAAC+AGG | - | chr7_3:80578074-80578093 | Msa1128660:intron | 45.0% | |
| GGACAAAAGTTGGGGAAGAA+AGG | - | chr7_3:80578146-80578165 | Msa1128660:intron | 45.0% | |
| !! | TGGGTTGGTCATTGTTGAGA+TGG | - | chr7_3:80578378-80578397 | Msa1128660:intron | 45.0% |
| GGGAATGATACCATCCCAAA+GGG | + | chr7_3:80578548-80578567 | None:intergenic | 45.0% | |
| AGGGAATGATACCATCCCAA+AGG | + | chr7_3:80578549-80578568 | None:intergenic | 45.0% | |
| ATCTGTATTCCCTGGGCAAT+CGG | + | chr7_3:80578819-80578838 | None:intergenic | 45.0% | |
| AGGCATCATCTGTATTCCCT+GGG | + | chr7_3:80578826-80578845 | None:intergenic | 45.0% | |
| ! | AAGGCATCATCTGTATTCCC+TGG | + | chr7_3:80578827-80578846 | None:intergenic | 45.0% |
| !! | AAATAAAAATTAACAAAAAA+GGG | + | chr7_3:80576266-80576285 | None:intergenic | 5.0% |
| !! | AAAATAAAAATTAACAAAAA+AGG | + | chr7_3:80576267-80576286 | None:intergenic | 5.0% |
| TGGACTTGAGCAGAAGGAGA+TGG | + | chr7_3:80576187-80576206 | None:intergenic | 50.0% | |
| ATCTCCTTCTGCTCAAGTCC+AGG | - | chr7_3:80576186-80576205 | Msa1128660:three_prime_UTR | 50.0% | |
| ACTCCCTTCCATAGTGCTCA+AGG | - | chr7_3:80576907-80576926 | Msa1128660:intron | 50.0% | |
| CCTTCCTTGAGCACTATGGA+AGG | + | chr7_3:80576914-80576933 | None:intergenic | 50.0% | |
| CCTTCCATAGTGCTCAAGGA+AGG | - | chr7_3:80576911-80576930 | Msa1128660:intron | 50.0% | |
| CTACCCTTCCTTGAGCACTA+TGG | + | chr7_3:80576918-80576937 | None:intergenic | 50.0% | |
| GAGTGAGAGTCTCCAACAGA+AGG | + | chr7_3:80577032-80577051 | None:intergenic | 50.0% | |
| AGGGTTGTGGTCTATCGCAT+TGG | + | chr7_3:80577101-80577120 | None:intergenic | 50.0% | |
| GGCGAAAGAAGCAGGTTACA+AGG | - | chr7_3:80577142-80577161 | Msa1128660:intron | 50.0% | |
| GAAGTTACCAAGAGAGCGGA+TGG | - | chr7_3:80577257-80577276 | Msa1128660:intron | 50.0% | |
| GCATTCCTGTGGGTAAAGTC+TGG | - | chr7_3:80577297-80577316 | Msa1128660:intron | 50.0% | |
| GGCTCCACAGTTATACTGCT+TGG | + | chr7_3:80577442-80577461 | None:intergenic | 50.0% | |
| AGAAAGGGATCCAAACGAGC+TGG | + | chr7_3:80577912-80577931 | None:intergenic | 50.0% | |
| GTACAGGGAACCAATTTGCG+TGG | - | chr7_3:80578709-80578728 | Msa1128660:CDS | 50.0% | |
| TGGCATAACATGCCAGTGCA+AGG | + | chr7_3:80578752-80578771 | None:intergenic | 50.0% | |
| GAGACCTGGACTTGAGCAGA+AGG | + | chr7_3:80576193-80576212 | None:intergenic | 55.0% | |
| ACAACCCAACGGTAACGACG+AGG | - | chr7_3:80576328-80576347 | Msa1128660:intron | 55.0% | |
| ! | CAAGGTACCATCCGCTCTCT+TGG | + | chr7_3:80577267-80577286 | None:intergenic | 55.0% |
| CAGAGCCAGACTTTACCCAC+AGG | + | chr7_3:80577305-80577324 | None:intergenic | 55.0% | |
| TACGAGGTCTTTGGCTAGGG+AGG | + | chr7_3:80577517-80577536 | None:intergenic | 55.0% | |
| CTGCTTGGGAAGGAGAAGCG+AGG | + | chr7_3:80577427-80577446 | None:intergenic | 60.0% | |
| ! | TGCCAGGTTACCGATTGCCC+AGG | - | chr7_3:80578806-80578825 | Msa1128660:intron | 60.0% |
| ! | GCCAGGTTACCGATTGCCCA+GGG | - | chr7_3:80578807-80578826 | Msa1128660:intron | 60.0% |
| TCCCTGGGCAATCGGTAACC+TGG | + | chr7_3:80578811-80578830 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 80576009 | 80579042 | 80576009 | ID=Msa1128660;Name=Msa1128660 |
| chr7_3 | mRNA | 80576009 | 80579042 | 80576009 | ID=Msa1128660-mRNA-1;Parent=Msa1128660;Name=Msa1128660-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|1|1|1|1|6|202|167 |
| chr7_3 | exon | 80576009 | 80576336 | 80576009 | ID=Msa1128660-mRNA-1:exon:23136;Parent=Msa1128660-mRNA-1 |
| chr7_3 | exon | 80576424 | 80576510 | 80576424 | ID=Msa1128660-mRNA-1:exon:23135;Parent=Msa1128660-mRNA-1 |
| chr7_3 | exon | 80576791 | 80576844 | 80576791 | ID=Msa1128660-mRNA-1:exon:23134;Parent=Msa1128660-mRNA-1 |
| chr7_3 | exon | 80576956 | 80577018 | 80576956 | ID=Msa1128660-mRNA-1:exon:23133;Parent=Msa1128660-mRNA-1 |
| chr7_3 | exon | 80578702 | 80578749 | 80578702 | ID=Msa1128660-mRNA-1:exon:23132;Parent=Msa1128660-mRNA-1 |
| chr7_3 | exon | 80578844 | 80579042 | 80578844 | ID=Msa1128660-mRNA-1:exon:23131;Parent=Msa1128660-mRNA-1 |
| chr7_3 | five_prime_UTR | 80578970 | 80579042 | 80578970 | ID=Msa1128660-mRNA-1:five_prime_utr;Parent=Msa1128660-mRNA-1 |
| chr7_3 | CDS | 80578844 | 80578969 | 80578844 | ID=Msa1128660-mRNA-1:cds;Parent=Msa1128660-mRNA-1 |
| chr7_3 | CDS | 80578702 | 80578749 | 80578702 | ID=Msa1128660-mRNA-1:cds;Parent=Msa1128660-mRNA-1 |
| chr7_3 | CDS | 80576956 | 80577018 | 80576956 | ID=Msa1128660-mRNA-1:cds;Parent=Msa1128660-mRNA-1 |
| chr7_3 | CDS | 80576791 | 80576844 | 80576791 | ID=Msa1128660-mRNA-1:cds;Parent=Msa1128660-mRNA-1 |
| chr7_3 | CDS | 80576424 | 80576510 | 80576424 | ID=Msa1128660-mRNA-1:cds;Parent=Msa1128660-mRNA-1 |
| chr7_3 | CDS | 80576211 | 80576336 | 80576211 | ID=Msa1128660-mRNA-1:cds;Parent=Msa1128660-mRNA-1 |
| chr7_3 | three_prime_UTR | 80576009 | 80576210 | 80576009 | ID=Msa1128660-mRNA-1:three_prime_utr;Parent=Msa1128660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
