Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083750 | XP_003626310.1 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.03e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083750 | sp|Q53YF3|SPC3B_ARATH | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.42e-100 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083750 | Q2HTM7 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 4.93e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa1083750 | 0.801455 | 8.930221e-49 | -8.615850e-47 |
| Msa0615440 | Msa1083750 | 0.805916 | 1.059254e-49 | -8.615850e-47 |
| Msa0618310 | Msa1083750 | 0.801886 | 7.285892e-49 | -8.615850e-47 |
| Msa0620620 | Msa1083750 | 0.816803 | 4.580282e-52 | -8.615850e-47 |
| Msa0641140 | Msa1083750 | 0.800303 | 1.535250e-48 | -8.615850e-47 |
| Msa0657790 | Msa1083750 | 0.813273 | 2.781826e-51 | -8.615850e-47 |
| Msa0659030 | Msa1083750 | 0.802382 | 5.760058e-49 | -8.615850e-47 |
| Msa0698490 | Msa1083750 | 0.804874 | 1.752172e-49 | -8.615850e-47 |
| Msa0698660 | Msa1083750 | 0.808806 | 2.584820e-50 | -8.615850e-47 |
| Msa0703230 | Msa1083750 | 0.802355 | 5.835066e-49 | -8.615850e-47 |
| Msa0704660 | Msa1083750 | 0.802065 | 6.694899e-49 | -8.615850e-47 |
| Msa0705000 | Msa1083750 | 0.810806 | 9.599281e-51 | -8.615850e-47 |
| Msa0705040 | Msa1083750 | 0.804857 | 1.766030e-49 | -8.615850e-47 |
| Msa0745200 | Msa1083750 | 0.834983 | 2.185338e-56 | -8.615850e-47 |
| Msa0819540 | Msa1083750 | 0.826359 | 2.833425e-54 | -8.615850e-47 |
| Msa0826760 | Msa1083750 | 0.814579 | 1.433865e-51 | -8.615850e-47 |
| Msa0185350 | Msa1083750 | 0.998111 | 2.065443e-256 | -8.615850e-47 |
| Msa0186890 | Msa1083750 | 0.803277 | 3.764075e-49 | -8.615850e-47 |
| Msa0187690 | Msa1083750 | 0.804648 | 1.953155e-49 | -8.615850e-47 |
| Msa0187930 | Msa1083750 | 0.803593 | 3.237375e-49 | -8.615850e-47 |
| Msa0194540 | Msa1083750 | 0.804826 | 1.792719e-49 | -8.615850e-47 |
| Msa1041140 | Msa1083750 | 0.807307 | 5.388794e-50 | -8.615850e-47 |
| Msa1041520 | Msa1083750 | 0.811180 | 7.962405e-51 | -8.615850e-47 |
| Msa1081560 | Msa1083750 | 0.810291 | 1.240256e-50 | -8.615850e-47 |
| Msa1082690 | Msa1083750 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa1083750 | Msa1127130 | 0.804208 | 2.411842e-49 | -8.615850e-47 |
| Msa1083750 | Msa1127190 | 0.833099 | 6.476761e-56 | -8.615850e-47 |
| Msa1083750 | Msa1127830 | 0.819143 | 1.355585e-52 | -8.615850e-47 |
| Msa1083750 | Msa1128660 | 0.998748 | 3.675096e-275 | -8.615850e-47 |
| Msa1083750 | Msa1131170 | 0.923111 | 4.080081e-89 | -8.615850e-47 |
| Msa1083750 | Msa1166410 | 0.804404 | 2.196150e-49 | -8.615850e-47 |
| Msa1083750 | Msa1206850 | 0.810738 | 9.930048e-51 | -8.615850e-47 |
| Msa1083750 | Msa1257510 | 0.802464 | 5.541293e-49 | -8.615850e-47 |
| Msa1083750 | Msa1282240 | 0.825244 | 5.209934e-54 | -8.615850e-47 |
| Msa1083750 | Msa1329540 | 0.801177 | 1.018235e-48 | -8.615850e-47 |
| Msa1083750 | Msa1362020 | 0.823908 | 1.075210e-53 | -8.615850e-47 |
| Msa1083750 | Msa1363330 | 0.815422 | 9.322795e-52 | -8.615850e-47 |
| Msa1083750 | Msa1386600 | 0.816393 | 5.660932e-52 | -8.615850e-47 |
| Msa1083750 | Msa1442850 | 0.823368 | 1.438004e-53 | -8.615850e-47 |
| Msa1083750 | Msa1450550 | -0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0244780 | Msa1083750 | 0.800272 | 1.558179e-48 | -8.615850e-47 |
| Msa0257520 | Msa1083750 | 0.803379 | 3.585013e-49 | -8.615850e-47 |
| Msa0268130 | Msa1083750 | 0.800077 | 1.707164e-48 | -8.615850e-47 |
| Msa0291520 | Msa1083750 | 0.811939 | 5.446884e-51 | -8.615850e-47 |
| Msa0526540 | Msa1083750 | 0.818540 | 1.858550e-52 | -8.615850e-47 |
| Msa0541860 | Msa1083750 | 0.805239 | 1.469740e-49 | -8.615850e-47 |
| Msa0545060 | Msa1083750 | 0.800762 | 1.238025e-48 | -8.615850e-47 |
| Msa0576940 | Msa1083750 | 0.815689 | 8.130172e-52 | -8.615850e-47 |
| Msa0865570 | Msa1083750 | 0.815690 | 8.124920e-52 | -8.615850e-47 |
| Msa0960830 | Msa1083750 | 0.800555 | 1.364272e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083750 | MtrunA17_Chr7g0273011 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 9.50e-124 | 345 |
| Msa1083750 | MtrunA17_Chr3g0087791 | 82.036 | 167 | 30 | 0 | 1 | 167 | 1 | 167 | 4.24e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1083750 | AT5G27430.1 | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.45e-101 | 289 |
| Msa1083750 | AT3G05230.1 | 75.449 | 167 | 41 | 0 | 1 | 167 | 1 | 167 | 5.97e-98 | 280 |
| Msa1083750 | AT3G05230.2 | 73.810 | 126 | 33 | 0 | 1 | 126 | 1 | 126 | 2.60e-69 | 206 |
Find 46 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAATAGCTTTCGAATAC+TGG | 0.245072 | 7_2:-84083179 | Msa1083750:three_prime_UTR |
| ACCTGATTCAAGGGTTTCTT+TGG | 0.249498 | 7_2:+84083927 | None:intergenic |
| AAATTCTCTACCACGCAAAT+TGG | 0.318602 | 7_2:+84083448 | None:intergenic |
| AGCATGACACTTAATATTTC+AGG | 0.320278 | 7_2:-84084131 | Msa1083750:CDS |
| AAACTTTGCATGCTCTTTAG+AGG | 0.327720 | 7_2:+84083601 | None:intergenic |
| TGTAGGTGTTGAATATTAAT+TGG | 0.336117 | 7_2:-84085861 | Msa1083750:intron |
| AGACAACCACAAGCAAATTT+CGG | 0.343664 | 7_2:+84083152 | None:intergenic |
| TAAATACCGTTTCATTGATC+AGG | 0.381152 | 7_2:-84083561 | Msa1083750:intron |
| ATCTATCTGTTTGATAAAAG+TGG | 0.408510 | 7_2:+84086130 | None:intergenic |
| AGAAGGAGATGGAGAATTGA+AGG | 0.420356 | 7_2:+84085985 | None:intergenic |
| CTTTATATCCCTTATAGAAA+AGG | 0.421029 | 7_2:+84083289 | None:intergenic |
| ACCAAAGAAACCCTTGAATC+AGG | 0.421703 | 7_2:-84083928 | Msa1083750:intron |
| ATCTGTATTCCCTGGGCAAT+CGG | 0.431457 | 7_2:+84083351 | None:intergenic |
| TAACCGAATGAATGCATTCT+CGG | 0.433139 | 7_2:+84086082 | None:intergenic |
| ATCTCCTTCTGCTCAAGTCC+AGG | 0.434481 | 7_2:-84085972 | Msa1083750:intron |
| TTGCTTTAAAGAAATAGATC+AGG | 0.435046 | 7_2:-84083264 | Msa1083750:three_prime_UTR |
| AATTACCTCGTCGTTACCGT+TGG | 0.465299 | 7_2:+84085825 | None:intergenic |
| ATTACCTCGTCGTTACCGTT+GGG | 0.472005 | 7_2:+84085826 | None:intergenic |
| GTTCACGTGGAACACAAAAC+AGG | 0.477621 | 7_2:-84084093 | Msa1083750:intron |
| AAGGCATCATCTGTATTCCC+TGG | 0.485485 | 7_2:+84083343 | None:intergenic |
| CATACATCATACCTGATTCA+AGG | 0.490102 | 7_2:+84083917 | None:intergenic |
| TCCCTGGGCAATCGGTAACC+TGG | 0.493808 | 7_2:+84083359 | None:intergenic |
| AACTTTGCATGCTCTTTAGA+GGG | 0.517084 | 7_2:+84083602 | None:intergenic |
| AAATATTGCGCTTTGGATGG+TGG | 0.521686 | 7_2:-84083236 | Msa1083750:three_prime_UTR |
| ACTCCGAGAATGCATTCATT+CGG | 0.527592 | 7_2:-84086085 | Msa1083750:exon |
| TGCCAGGTTACCGATTGCCC+AGG | 0.539181 | 7_2:-84083361 | Msa1083750:CDS |
| GGGAATGATACCATCCCAAA+GGG | 0.544276 | 7_2:+84083622 | None:intergenic |
| AATTTAACTTGACCTTGCAC+TGG | 0.545173 | 7_2:-84083430 | Msa1083750:CDS |
| TATATACCTGATCAATGAAA+CGG | 0.547986 | 7_2:+84083555 | None:intergenic |
| GCTGATAAAATAGTAATGCC+AGG | 0.552824 | 7_2:-84083377 | Msa1083750:CDS |
| TGGACTTGAGCAGAAGGAGA+TGG | 0.553502 | 7_2:+84085974 | None:intergenic |
| AGAAAATGTTAGCAAAGCGT+TGG | 0.554899 | 7_2:+84086054 | None:intergenic |
| GAGACCTGGACTTGAGCAGA+AGG | 0.562774 | 7_2:+84085968 | None:intergenic |
| TGGCATAACATGCCAGTGCA+AGG | 0.570110 | 7_2:+84083418 | None:intergenic |
| ATACATCATACCTGATTCAA+GGG | 0.573602 | 7_2:+84083918 | None:intergenic |
| TTACAGATATCCCTTTGGGA+TGG | 0.587335 | 7_2:-84083632 | Msa1083750:intron |
| TGCTTTAAAGAAATAGATCA+GGG | 0.588021 | 7_2:-84083263 | Msa1083750:three_prime_UTR |
| AGGCATCATCTGTATTCCCT+GGG | 0.600588 | 7_2:+84083344 | None:intergenic |
| GCCAGGTTACCGATTGCCCA+GGG | 0.602814 | 7_2:-84083360 | Msa1083750:CDS |
| AGGGAATGATACCATCCCAA+AGG | 0.633639 | 7_2:+84083621 | None:intergenic |
| GGAAATCCGAAATTTGCTTG+TGG | 0.651769 | 7_2:-84083158 | Msa1083750:three_prime_UTR |
| GTGGATAAAGAATTGAAACT+CGG | 0.664027 | 7_2:+84086149 | None:intergenic |
| ATTTACAGTCTCTGTTCACG+TGG | 0.665261 | 7_2:-84084106 | Msa1083750:CDS |
| GTACAGGGAACCAATTTGCG+TGG | 0.675868 | 7_2:-84083458 | Msa1083750:intron |
| ACAACCCAACGGTAACGACG+AGG | 0.716822 | 7_2:-84085830 | Msa1083750:intron |
| TGGTTTCAGAAACAACCCAA+CGG | 0.718343 | 7_2:-84085841 | Msa1083750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTATGTGT+AGG | - | chr7_2:84083418-84083437 | Msa1083750:CDS | 10.0% |
| !!! | TATACTGTTTTTTTTTTTTT+TGG | + | chr7_2:84084592-84084611 | None:intergenic | 10.0% |
| !!! | GTTTTTTGCAAATAAATAAA+AGG | + | chr7_2:84084705-84084724 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTGAA+TGG | - | chr7_2:84085090-84085109 | Msa1083750:intron | 15.0% |
| !! | AATAAATAAAAGGAGAGATT+GGG | + | chr7_2:84084695-84084714 | None:intergenic | 20.0% |
| !! | AAATAAATAAAAGGAGAGAT+TGG | + | chr7_2:84084696-84084715 | None:intergenic | 20.0% |
| !! | ATATGATACTCATAATAATG+TGG | + | chr7_2:84085001-84085020 | None:intergenic | 20.0% |
| !! | AATAAAGACAAAAAACTAAG+AGG | + | chr7_2:84085252-84085271 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTGTCTTTATTTC+AGG | - | chr7_2:84085254-84085273 | Msa1083750:intron | 20.0% |
| !!! | TTTAATCGCTTGTTATAAAA+AGG | + | chr7_2:84085469-84085488 | None:intergenic | 20.0% |
| !! | AAATAAAAAAGGCAAAGTTA+AGG | + | chr7_2:84085816-84085835 | None:intergenic | 20.0% |
| !!! | TAACTTTAACCTTTTCTATA+AGG | - | chr7_2:84085998-84086017 | Msa1083750:CDS | 20.0% |
| !!! | AACTTTAACCTTTTCTATAA+GGG | - | chr7_2:84085999-84086018 | Msa1083750:CDS | 20.0% |
| !!! | TTTTCTATAAGGGATATAAA+GGG | - | chr7_2:84086009-84086028 | Msa1083750:CDS | 20.0% |
| ! | ATCTATCTGTTTGATAAAAG+TGG | + | chr7_2:84083169-84083188 | None:intergenic | 25.0% |
| !!! | TGTAGGTGTTGAATATTAAT+TGG | - | chr7_2:84083435-84083454 | Msa1083750:CDS | 25.0% |
| ! | TTACTTTATCCTTATGTCTA+TGG | - | chr7_2:84083652-84083671 | Msa1083750:intron | 25.0% |
| !!! | TAATTGTGTCATTTAAGTTG+TGG | - | chr7_2:84083675-84083694 | Msa1083750:intron | 25.0% |
| ! | ATATACTGTAACATGAATCA+GGG | + | chr7_2:84083707-84083726 | None:intergenic | 25.0% |
| !! | ATGTGATTTTGAATTACTGA+AGG | - | chr7_2:84083788-84083807 | Msa1083750:intron | 25.0% |
| ! | TCCTATATATAAGAGAAAGT+TGG | - | chr7_2:84083882-84083901 | Msa1083750:intron | 25.0% |
| ! | CCTATATATAAGAGAAAGTT+GGG | - | chr7_2:84083883-84083902 | Msa1083750:intron | 25.0% |
| !!! | TATTGGTTCAAAATTTGGAT+CGG | + | chr7_2:84083929-84083948 | None:intergenic | 25.0% |
| !!! | TGATGTATTGGTTCAAAATT+TGG | + | chr7_2:84083934-84083953 | None:intergenic | 25.0% |
| ! | TCCTAAATATAAGAGAAAGT+TGG | + | chr7_2:84083969-84083988 | None:intergenic | 25.0% |
| ! | TACTACTTATATAGGGTATA+GGG | - | chr7_2:84084002-84084021 | Msa1083750:intron | 25.0% |
| ! | CACAATCAGTTGAAAAAATA+AGG | + | chr7_2:84084202-84084221 | None:intergenic | 25.0% |
| !!! | TTAGAAAGTGGGTTATATAA+GGG | - | chr7_2:84084364-84084383 | Msa1083750:intron | 25.0% |
| ! | AACAGTATAATTGTAGAACT+TGG | - | chr7_2:84084603-84084622 | Msa1083750:intron | 25.0% |
| ! | ATAAATAAAAGGAGAGATTG+GGG | + | chr7_2:84084694-84084713 | None:intergenic | 25.0% |
| !!! | CTACATACTTTTTTCAAAGA+TGG | - | chr7_2:84084940-84084959 | Msa1083750:intron | 25.0% |
| ! | TTTATTTCAGGACAAAAGTT+GGG | - | chr7_2:84085266-84085285 | Msa1083750:intron | 25.0% |
| ! | TATATACCTGATCAATGAAA+CGG | + | chr7_2:84085744-84085763 | None:intergenic | 25.0% |
| ! | ATCAGGTATATAACTCTTAT+AGG | - | chr7_2:84085752-84085771 | Msa1083750:intron | 25.0% |
| ! | CAAAAACATTAACATGACAA+AGG | + | chr7_2:84085975-84085994 | None:intergenic | 25.0% |
| ! | CTTTATATCCCTTATAGAAA+AGG | + | chr7_2:84086010-84086029 | None:intergenic | 25.0% |
| !! | CTTTTCTATAAGGGATATAA+AGG | - | chr7_2:84086008-84086027 | Msa1083750:CDS | 25.0% |
| !!! | TTGCTTTAAAGAAATAGATC+AGG | - | chr7_2:84086032-84086051 | Msa1083750:CDS | 25.0% |
| !!! | TGCTTTAAAGAAATAGATCA+GGG | - | chr7_2:84086033-84086052 | Msa1083750:CDS | 25.0% |
| GTGGATAAAGAATTGAAACT+CGG | + | chr7_2:84083150-84083169 | None:intergenic | 30.0% | |
| ACACAATTACCATAGACATA+AGG | + | chr7_2:84083664-84083683 | None:intergenic | 30.0% | |
| CATATACTGTAACATGAATC+AGG | + | chr7_2:84083708-84083727 | None:intergenic | 30.0% | |
| TTCATGTTACAGTATATGCA+AGG | - | chr7_2:84083710-84083729 | Msa1083750:intron | 30.0% | |
| CTATAGTTATAAACTCCATC+CGG | - | chr7_2:84083859-84083878 | Msa1083750:intron | 30.0% | |
| CTTTCTCTTATATATAGGAC+CGG | + | chr7_2:84083881-84083900 | None:intergenic | 30.0% | |
| CCCAACTTTCTCTTATATAT+AGG | + | chr7_2:84083886-84083905 | None:intergenic | 30.0% | |
| TTGGGTCAACAAAAGTTAAT+GGG | - | chr7_2:84083901-84083920 | Msa1083750:intron | 30.0% | |
| ! | ATTGGTTCAAAATTTGGATC+GGG | + | chr7_2:84083928-84083947 | None:intergenic | 30.0% |
| GCCAACTTTCTCTTATATTT+AGG | - | chr7_2:84083965-84083984 | Msa1083750:intron | 30.0% | |
| ! | CTTTCTCTTATATTTAGGAC+TGG | - | chr7_2:84083970-84083989 | Msa1083750:intron | 30.0% |
| ! | GGAGTACTACTACTTATATA+GGG | - | chr7_2:84083995-84084014 | Msa1083750:intron | 30.0% |
| CTACTACTTATATAGGGTAT+AGG | - | chr7_2:84084001-84084020 | Msa1083750:intron | 30.0% | |
| ! | TTGCTTCATAAGACTCTTTT+TGG | + | chr7_2:84084086-84084105 | None:intergenic | 30.0% |
| GGTATATGACTTCACATATA+AGG | + | chr7_2:84084140-84084159 | None:intergenic | 30.0% | |
| ACATAAACCCTCTTAATCAA+GGG | + | chr7_2:84084249-84084268 | None:intergenic | 30.0% | |
| AACATAAACCCTCTTAATCA+AGG | + | chr7_2:84084250-84084269 | None:intergenic | 30.0% | |
| TGATTAAGAGGGTTTATGTT+AGG | - | chr7_2:84084250-84084269 | Msa1083750:intron | 30.0% | |
| TAACATCTTTCGTAACAATC+TGG | + | chr7_2:84084321-84084340 | None:intergenic | 30.0% | |
| AGATTGTTACGAAAGATGTT+AGG | - | chr7_2:84084320-84084339 | Msa1083750:intron | 30.0% | |
| GATTGTTACGAAAGATGTTA+GGG | - | chr7_2:84084321-84084340 | Msa1083750:intron | 30.0% | |
| TCAGTTGAAAAGTTAGAAAG+TGG | - | chr7_2:84084352-84084371 | Msa1083750:intron | 30.0% | |
| CAGTTGAAAAGTTAGAAAGT+GGG | - | chr7_2:84084353-84084372 | Msa1083750:intron | 30.0% | |
| !! | GTTAGAAAGTGGGTTATATA+AGG | - | chr7_2:84084363-84084382 | Msa1083750:intron | 30.0% |
| ! | GCAATTCTTTCTGTTTTCTA+AGG | - | chr7_2:84084493-84084512 | Msa1083750:intron | 30.0% |
| AGTATAATTGTAGAACTTGG+AGG | - | chr7_2:84084606-84084625 | Msa1083750:intron | 30.0% | |
| GTATAATTGTAGAACTTGGA+GGG | - | chr7_2:84084607-84084626 | Msa1083750:intron | 30.0% | |
| TAAATAAAAGGAGAGATTGG+GGG | + | chr7_2:84084693-84084712 | None:intergenic | 30.0% | |
| AGGAAGATAGTGAAGAAATA+AGG | + | chr7_2:84084727-84084746 | None:intergenic | 30.0% | |
| ACTATCTTCCTTACTAACTA+AGG | - | chr7_2:84084736-84084755 | Msa1083750:intron | 30.0% | |
| TACATCGAATCTTTCAGATT+TGG | + | chr7_2:84084797-84084816 | None:intergenic | 30.0% | |
| ATTTACATACAACAGACAAG+AGG | - | chr7_2:84084847-84084866 | Msa1083750:intron | 30.0% | |
| AAATCATAGCTGGAAATTGT+TGG | - | chr7_2:84084896-84084915 | Msa1083750:intron | 30.0% | |
| AATTGTTGGAAACATCATGT+TGG | - | chr7_2:84084910-84084929 | Msa1083750:intron | 30.0% | |
| GATACTCATAATAATGTGGT+AGG | + | chr7_2:84084997-84085016 | None:intergenic | 30.0% | |
| GACATTGAATATCAGAGAAA+GGG | + | chr7_2:84085056-84085075 | None:intergenic | 30.0% | |
| TGACATTGAATATCAGAGAA+AGG | + | chr7_2:84085057-84085076 | None:intergenic | 30.0% | |
| ATTCGTTGTTCAAACTGAAA+TGG | - | chr7_2:84085119-84085138 | Msa1083750:intron | 30.0% | |
| AGCATGACACTTAATATTTC+AGG | - | chr7_2:84085165-84085184 | Msa1083750:intron | 30.0% | |
| ! | CTTTATTTCAGGACAAAAGT+TGG | - | chr7_2:84085265-84085284 | Msa1083750:intron | 30.0% |
| TTATTTCAGGACAAAAGTTG+GGG | - | chr7_2:84085267-84085286 | Msa1083750:intron | 30.0% | |
| ! | GGAAGAAAGGAAACTAATTT+TGG | - | chr7_2:84085288-84085307 | Msa1083750:intron | 30.0% |
| ATACATCATACCTGATTCAA+GGG | + | chr7_2:84085381-84085400 | None:intergenic | 30.0% | |
| AAGCGATTAAAAGAAAGACA+TGG | - | chr7_2:84085478-84085497 | Msa1083750:intron | 30.0% | |
| AAAGAAAGACATGGTAATAG+TGG | - | chr7_2:84085487-84085506 | Msa1083750:intron | 30.0% | |
| AAGAAAGACATGGTAATAGT+GGG | - | chr7_2:84085488-84085507 | Msa1083750:intron | 30.0% | |
| ! | CATTTTACAGATATCCCTTT+GGG | - | chr7_2:84085660-84085679 | Msa1083750:intron | 30.0% |
| TAAATACCGTTTCATTGATC+AGG | - | chr7_2:84085735-84085754 | Msa1083750:intron | 30.0% | |
| GAATTACCTCAGATTTCTTT+AGG | - | chr7_2:84085790-84085809 | Msa1083750:intron | 30.0% | |
| !!! | TGCCTTTTTTATTTGTGTAC+AGG | - | chr7_2:84085822-84085841 | Msa1083750:intron | 30.0% |
| !!! | GCCTTTTTTATTTGTGTACA+GGG | - | chr7_2:84085823-84085842 | Msa1083750:intron | 30.0% |
| TCCCTGTACACAAATAAAAA+AGG | + | chr7_2:84085827-84085846 | None:intergenic | 30.0% | |
| ! | AAAAAATATTGCGCTTTGGA+TGG | - | chr7_2:84086057-84086076 | Msa1083750:CDS | 30.0% |
| TAACCGAATGAATGCATTCT+CGG | + | chr7_2:84083217-84083236 | None:intergenic | 35.0% | |
| AGAAAATGTTAGCAAAGCGT+TGG | + | chr7_2:84083245-84083264 | None:intergenic | 35.0% | |
| TCTTCCTAGACAATACCATT+GGG | + | chr7_2:84083824-84083843 | None:intergenic | 35.0% | |
| GTTGGGTCAACAAAAGTTAA+TGG | - | chr7_2:84083900-84083919 | Msa1083750:intron | 35.0% | |
| !! | CTCAACAAGAGTTGATGTAT+TGG | + | chr7_2:84083946-84083965 | None:intergenic | 35.0% |
| ! | TCTCTTATATTTAGGACTGG+AGG | - | chr7_2:84083973-84083992 | Msa1083750:intron | 35.0% |
| ! | CTCTTATATTTAGGACTGGA+GGG | - | chr7_2:84083974-84083993 | Msa1083750:intron | 35.0% |
| !! | GGGAGTACTACTACTTATAT+AGG | - | chr7_2:84083994-84084013 | Msa1083750:intron | 35.0% |
| TATAGGGTATAGGGTATGAA+AGG | - | chr7_2:84084011-84084030 | Msa1083750:intron | 35.0% | |
| TGACTTCACATATAAGGCAA+GGG | + | chr7_2:84084134-84084153 | None:intergenic | 35.0% | |
| ATGACTTCACATATAAGGCA+AGG | + | chr7_2:84084135-84084154 | None:intergenic | 35.0% | |
| TGAAGTCATATACCTTCTGT+TGG | - | chr7_2:84084146-84084165 | Msa1083750:intron | 35.0% | |
| TGCTGAATAAACAGTGTAGT+CGG | - | chr7_2:84084452-84084471 | Msa1083750:intron | 35.0% | |
| ! | ATATATCAAGCACTGTGAAC+CGG | + | chr7_2:84084532-84084551 | None:intergenic | 35.0% |
| TTTGAAAGATACGAGGTCTT+TGG | + | chr7_2:84084655-84084674 | None:intergenic | 35.0% | |
| ! | CTTGTCATTTGAAAGATACG+AGG | + | chr7_2:84084662-84084681 | None:intergenic | 35.0% |
| TCTTCCTTACTAACTAAGGA+AGG | - | chr7_2:84084740-84084759 | Msa1083750:intron | 35.0% | |
| GTAGTTTGACGACTTCTAAT+AGG | + | chr7_2:84084772-84084791 | None:intergenic | 35.0% | |
| ATCGAATCTTTCAGATTTGG+AGG | + | chr7_2:84084794-84084813 | None:intergenic | 35.0% | |
| ATTCGATGTAATTGCTTCAG+AGG | - | chr7_2:84084807-84084826 | Msa1083750:intron | 35.0% | |
| AAACAGGTCAAAATCATAGC+TGG | - | chr7_2:84084886-84084905 | Msa1083750:intron | 35.0% | |
| ACTCATAATAATGTGGTAGG+CGG | + | chr7_2:84084994-84085013 | None:intergenic | 35.0% | |
| ! | TTTTCATTTACCAGCTCGTT+TGG | - | chr7_2:84085028-84085047 | Msa1083750:intron | 35.0% |
| !! | GGAAGCATTATTATTCTTGC+AGG | - | chr7_2:84085140-84085159 | Msa1083750:intron | 35.0% |
| ! | TGCTTCTTTTCTATGCTTTC+AGG | - | chr7_2:84085314-84085333 | Msa1083750:intron | 35.0% |
| CATACATCATACCTGATTCA+AGG | + | chr7_2:84085382-84085401 | None:intergenic | 35.0% | |
| ATCAGGTATGATGTATGCTT+TGG | - | chr7_2:84085385-84085404 | Msa1083750:intron | 35.0% | |
| AGTTGGCAAGCTTCAAATTT+AGG | + | chr7_2:84085446-84085465 | None:intergenic | 35.0% | |
| !! | CGCTTGTTATAAAAAGGAGT+TGG | + | chr7_2:84085463-84085482 | None:intergenic | 35.0% |
| CCAAAGGGATATCTGTAAAA+TGG | + | chr7_2:84085662-84085681 | None:intergenic | 35.0% | |
| ! | CCATTTTACAGATATCCCTT+TGG | - | chr7_2:84085659-84085678 | Msa1083750:intron | 35.0% |
| AACTTTGCATGCTCTTTAGA+GGG | + | chr7_2:84085697-84085716 | None:intergenic | 35.0% | |
| AAACTTTGCATGCTCTTTAG+AGG | + | chr7_2:84085698-84085717 | None:intergenic | 35.0% | |
| TTAAGGCCTAAAGAAATCTG+AGG | + | chr7_2:84085799-84085818 | None:intergenic | 35.0% | |
| AAATTCTCTACCACGCAAAT+TGG | + | chr7_2:84085851-84085870 | None:intergenic | 35.0% | |
| !! | AATTTAACTTGACCTTGCAC+TGG | - | chr7_2:84085866-84085885 | Msa1083750:intron | 35.0% |
| GCCAAAAACTGGAAAAATGT+TGG | - | chr7_2:84085897-84085916 | Msa1083750:intron | 35.0% | |
| ! | GCCAACATTTTTCCAGTTTT+TGG | + | chr7_2:84085901-84085920 | None:intergenic | 35.0% |
| GCTGATAAAATAGTAATGCC+AGG | - | chr7_2:84085919-84085938 | Msa1083750:intron | 35.0% | |
| GGGAAAAAAATATTGCGCTT+TGG | - | chr7_2:84086053-84086072 | Msa1083750:CDS | 35.0% | |
| GAGAAATAGCTTTCGAATAC+TGG | - | chr7_2:84086117-84086136 | Msa1083750:five_prime_UTR | 35.0% | |
| AGACAACCACAAGCAAATTT+CGG | + | chr7_2:84086147-84086166 | None:intergenic | 35.0% | |
| ACTCCGAGAATGCATTCATT+CGG | - | chr7_2:84083211-84083230 | Msa1083750:three_prime_UTR | 40.0% | |
| AGAAGGAGATGGAGAATTGA+AGG | + | chr7_2:84083314-84083333 | None:intergenic | 40.0% | |
| TGGTTTCAGAAACAACCCAA+CGG | - | chr7_2:84083455-84083474 | Msa1083750:CDS | 40.0% | |
| AATCCCCAATGGTATTGTCT+AGG | - | chr7_2:84083817-84083836 | Msa1083750:intron | 40.0% | |
| CTTCCTAGACAATACCATTG+GGG | + | chr7_2:84083823-84083842 | None:intergenic | 40.0% | |
| CTCTTCCTAGACAATACCAT+TGG | + | chr7_2:84083825-84083844 | None:intergenic | 40.0% | |
| CTCTTATATATAGGACCGGA+TGG | + | chr7_2:84083877-84083896 | None:intergenic | 40.0% | |
| ACCACAACCCTTGATTAAGA+GGG | - | chr7_2:84084239-84084258 | Msa1083750:intron | 40.0% | |
| TTATGTTAGGCGAAAGAAGC+AGG | - | chr7_2:84084263-84084282 | Msa1083750:intron | 40.0% | |
| ! | CGGATGGTACCTTGTATTTT+GGG | - | chr7_2:84084402-84084421 | Msa1083750:intron | 40.0% |
| AGGAATGCTCCCAAAATACA+AGG | + | chr7_2:84084414-84084433 | None:intergenic | 40.0% | |
| !!! | TATTTTGGGAGCATTCCTGT+GGG | - | chr7_2:84084416-84084435 | Msa1083750:intron | 40.0% |
| CTCTCCTTCCTTAGTTAGTA+AGG | + | chr7_2:84084747-84084766 | None:intergenic | 40.0% | |
| TACTTGTGTGTGCATGAAAC+AGG | - | chr7_2:84084870-84084889 | Msa1083750:intron | 40.0% | |
| ATTTACAGTCTCTGTTCACG+TGG | - | chr7_2:84085190-84085209 | Msa1083750:intron | 40.0% | |
| ACCAAAGAAACCCTTGAATC+AGG | - | chr7_2:84085368-84085387 | Msa1083750:intron | 40.0% | |
| ACCTGATTCAAGGGTTTCTT+TGG | + | chr7_2:84085372-84085391 | None:intergenic | 40.0% | |
| !! | AAGACATGGTAATAGTGGGT+TGG | - | chr7_2:84085492-84085511 | Msa1083750:intron | 40.0% |
| !! | TGCTGCATTTCTGTCACTTT+CGG | - | chr7_2:84085598-84085617 | Msa1083750:intron | 40.0% |
| ! | TTACAGATATCCCTTTGGGA+TGG | - | chr7_2:84085664-84085683 | Msa1083750:intron | 40.0% |
| TGGCATGTTATGCCAAAAAC+TGG | - | chr7_2:84085886-84085905 | Msa1083750:intron | 40.0% | |
| ! | AAATATTGCGCTTTGGATGG+TGG | - | chr7_2:84086060-84086079 | Msa1083750:CDS | 40.0% |
| ! | GGAAATCCGAAATTTGCTTG+TGG | - | chr7_2:84086138-84086157 | Msa1083750:five_prime_UTR | 40.0% |
| GAAAGAGAAGAGAAGAGACC+TGG | + | chr7_2:84083345-84083364 | None:intergenic | 45.0% | |
| ATTACCTCGTCGTTACCGTT+GGG | + | chr7_2:84083473-84083492 | None:intergenic | 45.0% | |
| AATTACCTCGTCGTTACCGT+TGG | + | chr7_2:84083474-84083493 | None:intergenic | 45.0% | |
| ! | GAAGGAGTGTAAATCCCCAA+TGG | - | chr7_2:84083806-84083825 | Msa1083750:intron | 45.0% |
| TACCCTTCCTTGAGCACTTT+GGG | + | chr7_2:84084049-84084068 | None:intergenic | 45.0% | |
| AGGAAGGGTAGTATGTGATG+TGG | - | chr7_2:84084059-84084078 | Msa1083750:intron | 45.0% | |
| GACCACAACCCTTGATTAAG+AGG | - | chr7_2:84084238-84084257 | Msa1083750:intron | 45.0% | |
| ACCCTCTTAATCAAGGGTTG+TGG | + | chr7_2:84084243-84084262 | None:intergenic | 45.0% | |
| GCGAAAGAAGCAGGTTACAA+GGG | - | chr7_2:84084272-84084291 | Msa1083750:intron | 45.0% | |
| AAGGGAAGTTACCAAGAGAG+CGG | - | chr7_2:84084382-84084401 | Msa1083750:intron | 45.0% | |
| ! | GCGGATGGTACCTTGTATTT+TGG | - | chr7_2:84084401-84084420 | Msa1083750:intron | 45.0% |
| !!! | GTATTTTGGGAGCATTCCTG+TGG | - | chr7_2:84084415-84084434 | Msa1083750:intron | 45.0% |
| CTAAGGCCAGTTCTATTCAC+CGG | - | chr7_2:84084510-84084529 | Msa1083750:intron | 45.0% | |
| TGTGAACCGGTGAATAGAAC+TGG | + | chr7_2:84084519-84084538 | None:intergenic | 45.0% | |
| CACAGTTATACTGCTTGGGA+AGG | + | chr7_2:84084566-84084585 | None:intergenic | 45.0% | |
| CTTCCCAAGCAGTATAACTG+TGG | - | chr7_2:84084564-84084583 | Msa1083750:intron | 45.0% | |
| GCTCCACAGTTATACTGCTT+GGG | + | chr7_2:84084570-84084589 | None:intergenic | 45.0% | |
| AGATACGAGGTCTTTGGCTA+GGG | + | chr7_2:84084649-84084668 | None:intergenic | 45.0% | |
| AAGATACGAGGTCTTTGGCT+AGG | + | chr7_2:84084650-84084669 | None:intergenic | 45.0% | |
| TAAAAGGAGAGATTGGGGGA+AGG | + | chr7_2:84084689-84084708 | None:intergenic | 45.0% | |
| GTTCACGTGGAACACAAAAC+AGG | - | chr7_2:84085203-84085222 | Msa1083750:intron | 45.0% | |
| GGACAAAAGTTGGGGAAGAA+AGG | - | chr7_2:84085275-84085294 | Msa1083750:intron | 45.0% | |
| !! | TGGGTTGGTCATTGTTGAGA+TGG | - | chr7_2:84085507-84085526 | Msa1083750:intron | 45.0% |
| GGGAATGATACCATCCCAAA+GGG | + | chr7_2:84085677-84085696 | None:intergenic | 45.0% | |
| AGGGAATGATACCATCCCAA+AGG | + | chr7_2:84085678-84085697 | None:intergenic | 45.0% | |
| ATCTGTATTCCCTGGGCAAT+CGG | + | chr7_2:84085948-84085967 | None:intergenic | 45.0% | |
| AGGCATCATCTGTATTCCCT+GGG | + | chr7_2:84085955-84085974 | None:intergenic | 45.0% | |
| ! | AAGGCATCATCTGTATTCCC+TGG | + | chr7_2:84085956-84085975 | None:intergenic | 45.0% |
| !! | AAATAAAAATTAACAAAAAA+GGG | + | chr7_2:84083404-84083423 | None:intergenic | 5.0% |
| !! | AAAATAAAAATTAACAAAAA+AGG | + | chr7_2:84083405-84083424 | None:intergenic | 5.0% |
| TGGACTTGAGCAGAAGGAGA+TGG | + | chr7_2:84083325-84083344 | None:intergenic | 50.0% | |
| ATCTCCTTCTGCTCAAGTCC+AGG | - | chr7_2:84083324-84083343 | Msa1083750:three_prime_UTR | 50.0% | |
| ! | CTTCCTTGAGCACTTTGGGA+GGG | + | chr7_2:84084045-84084064 | None:intergenic | 50.0% |
| ! | CTCCCAAAGTGCTCAAGGAA+GGG | - | chr7_2:84084044-84084063 | Msa1083750:intron | 50.0% |
| CTACCCTTCCTTGAGCACTT+TGG | + | chr7_2:84084050-84084069 | None:intergenic | 50.0% | |
| GAGTGAGAGTCTCCAACAGA+AGG | + | chr7_2:84084161-84084180 | None:intergenic | 50.0% | |
| AGGGTTGTGGTCTATCGCAT+TGG | + | chr7_2:84084230-84084249 | None:intergenic | 50.0% | |
| GGCGAAAGAAGCAGGTTACA+AGG | - | chr7_2:84084271-84084290 | Msa1083750:intron | 50.0% | |
| GAAGTTACCAAGAGAGCGGA+TGG | - | chr7_2:84084386-84084405 | Msa1083750:intron | 50.0% | |
| GCATTCCTGTGGGTAAAGTC+TGG | - | chr7_2:84084426-84084445 | Msa1083750:intron | 50.0% | |
| GGCTCCACAGTTATACTGCT+TGG | + | chr7_2:84084571-84084590 | None:intergenic | 50.0% | |
| AGAAAGGGATCCAAACGAGC+TGG | + | chr7_2:84085041-84085060 | None:intergenic | 50.0% | |
| GTACAGGGAACCAATTTGCG+TGG | - | chr7_2:84085838-84085857 | Msa1083750:CDS | 50.0% | |
| TGGCATAACATGCCAGTGCA+AGG | + | chr7_2:84085881-84085900 | None:intergenic | 50.0% | |
| GAGACCTGGACTTGAGCAGA+AGG | + | chr7_2:84083331-84083350 | None:intergenic | 55.0% | |
| ACAACCCAACGGTAACGACG+AGG | - | chr7_2:84083466-84083485 | Msa1083750:intron | 55.0% | |
| ! | ACTCCCTCCCAAAGTGCTCA+AGG | - | chr7_2:84084039-84084058 | Msa1083750:intron | 55.0% |
| CCTTCCTTGAGCACTTTGGG+AGG | + | chr7_2:84084046-84084065 | None:intergenic | 55.0% | |
| ! | CCTCCCAAAGTGCTCAAGGA+AGG | - | chr7_2:84084043-84084062 | Msa1083750:intron | 55.0% |
| ! | CAAGGTACCATCCGCTCTCT+TGG | + | chr7_2:84084396-84084415 | None:intergenic | 55.0% |
| CAGAGCCAGACTTTACCCAC+AGG | + | chr7_2:84084434-84084453 | None:intergenic | 55.0% | |
| TACGAGGTCTTTGGCTAGGG+AGG | + | chr7_2:84084646-84084665 | None:intergenic | 55.0% | |
| CTGCTTGGGAAGGAGAAGCG+AGG | + | chr7_2:84084556-84084575 | None:intergenic | 60.0% | |
| ! | TGCCAGGTTACCGATTGCCC+AGG | - | chr7_2:84085935-84085954 | Msa1083750:intron | 60.0% |
| ! | GCCAGGTTACCGATTGCCCA+GGG | - | chr7_2:84085936-84085955 | Msa1083750:intron | 60.0% |
| TCCCTGGGCAATCGGTAACC+TGG | + | chr7_2:84085940-84085959 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 84083147 | 84086171 | 84083147 | ID=Msa1083750;Name=Msa1083750 |
| chr7_2 | mRNA | 84083147 | 84086171 | 84083147 | ID=Msa1083750-mRNA-1;Parent=Msa1083750;Name=Msa1083750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|1|1|1|1|6|202|167 |
| chr7_2 | exon | 84083147 | 84083474 | 84083147 | ID=Msa1083750-mRNA-1:exon:22303;Parent=Msa1083750-mRNA-1 |
| chr7_2 | exon | 84083562 | 84083648 | 84083562 | ID=Msa1083750-mRNA-1:exon:22302;Parent=Msa1083750-mRNA-1 |
| chr7_2 | exon | 84083929 | 84083982 | 84083929 | ID=Msa1083750-mRNA-1:exon:22301;Parent=Msa1083750-mRNA-1 |
| chr7_2 | exon | 84084094 | 84084156 | 84084094 | ID=Msa1083750-mRNA-1:exon:22300;Parent=Msa1083750-mRNA-1 |
| chr7_2 | exon | 84085831 | 84085878 | 84085831 | ID=Msa1083750-mRNA-1:exon:22299;Parent=Msa1083750-mRNA-1 |
| chr7_2 | exon | 84085973 | 84086171 | 84085973 | ID=Msa1083750-mRNA-1:exon:22298;Parent=Msa1083750-mRNA-1 |
| chr7_2 | five_prime_UTR | 84086099 | 84086171 | 84086099 | ID=Msa1083750-mRNA-1:five_prime_utr;Parent=Msa1083750-mRNA-1 |
| chr7_2 | CDS | 84085973 | 84086098 | 84085973 | ID=Msa1083750-mRNA-1:cds;Parent=Msa1083750-mRNA-1 |
| chr7_2 | CDS | 84085831 | 84085878 | 84085831 | ID=Msa1083750-mRNA-1:cds;Parent=Msa1083750-mRNA-1 |
| chr7_2 | CDS | 84084094 | 84084156 | 84084094 | ID=Msa1083750-mRNA-1:cds;Parent=Msa1083750-mRNA-1 |
| chr7_2 | CDS | 84083929 | 84083982 | 84083929 | ID=Msa1083750-mRNA-1:cds;Parent=Msa1083750-mRNA-1 |
| chr7_2 | CDS | 84083562 | 84083648 | 84083562 | ID=Msa1083750-mRNA-1:cds;Parent=Msa1083750-mRNA-1 |
| chr7_2 | CDS | 84083349 | 84083474 | 84083349 | ID=Msa1083750-mRNA-1:cds;Parent=Msa1083750-mRNA-1 |
| chr7_2 | three_prime_UTR | 84083147 | 84083348 | 84083147 | ID=Msa1083750-mRNA-1:three_prime_utr;Parent=Msa1083750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
