Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185350 | XP_003626310.1 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.03e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185350 | sp|Q53YF3|SPC3B_ARATH | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.42e-100 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185350 | Q2HTM7 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 4.93e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0185350 | 0.800049 | 1.729661e-48 | -8.615850e-47 |
| Msa0074320 | Msa0185350 | 0.802743 | 4.854437e-49 | -8.615850e-47 |
| Msa0185350 | Msa0186890 | 0.805452 | 1.325987e-49 | -8.615850e-47 |
| Msa0185350 | Msa0187690 | 0.808063 | 3.722907e-50 | -8.615850e-47 |
| Msa0185350 | Msa0187930 | 0.804574 | 2.023455e-49 | -8.615850e-47 |
| Msa0185350 | Msa0194540 | 0.805089 | 1.579333e-49 | -8.615850e-47 |
| Msa0185350 | Msa0244780 | 0.802108 | 6.560177e-49 | -8.615850e-47 |
| Msa0185350 | Msa0268130 | 0.801492 | 8.778634e-49 | -8.615850e-47 |
| Msa0185350 | Msa0291520 | 0.812774 | 3.579249e-51 | -8.615850e-47 |
| Msa0185350 | Msa0526540 | 0.820014 | 8.580662e-53 | -8.615850e-47 |
| Msa0185350 | Msa0541860 | 0.807119 | 5.905302e-50 | -8.615850e-47 |
| Msa0185350 | Msa0576940 | 0.818613 | 1.788986e-52 | -8.615850e-47 |
| Msa0185350 | Msa0615440 | 0.804260 | 2.352446e-49 | -8.615850e-47 |
| Msa0185350 | Msa0618310 | 0.806124 | 9.577137e-50 | -8.615850e-47 |
| Msa0185350 | Msa0620620 | 0.812180 | 4.827337e-51 | -8.615850e-47 |
| Msa0185350 | Msa0657790 | 0.819337 | 1.224924e-52 | -8.615850e-47 |
| Msa0185350 | Msa0659030 | 0.809692 | 1.668569e-50 | -8.615850e-47 |
| Msa0185350 | Msa0698490 | 0.802976 | 4.345369e-49 | -8.615850e-47 |
| Msa0185350 | Msa0698660 | 0.807492 | 4.923001e-50 | -8.615850e-47 |
| Msa0185350 | Msa0703230 | 0.804165 | 2.462010e-49 | -8.615850e-47 |
| Msa0185350 | Msa0704660 | 0.802869 | 4.572426e-49 | -8.615850e-47 |
| Msa0185350 | Msa0705000 | 0.817211 | 3.708786e-52 | -8.615850e-47 |
| Msa0185350 | Msa0705040 | 0.811377 | 7.216185e-51 | -8.615850e-47 |
| Msa0185350 | Msa0745200 | 0.833184 | 6.170954e-56 | -8.615850e-47 |
| Msa0185350 | Msa0819540 | 0.829437 | 5.151079e-55 | -8.615850e-47 |
| Msa0185350 | Msa0826760 | 0.811068 | 8.423879e-51 | -8.615850e-47 |
| Msa0185350 | Msa0865570 | 0.812856 | 3.434509e-51 | -8.615850e-47 |
| Msa0185350 | Msa0960830 | 0.802627 | 5.129346e-49 | -8.615850e-47 |
| Msa0185350 | Msa1025940 | 0.800221 | 1.595258e-48 | -8.615850e-47 |
| Msa0185350 | Msa1036550 | 0.800090 | 1.696336e-48 | -8.615850e-47 |
| Msa0185350 | Msa1041140 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa0185350 | Msa1041520 | 0.807869 | 4.093769e-50 | -8.615850e-47 |
| Msa0185350 | Msa1081560 | 0.805559 | 1.259252e-49 | -8.615850e-47 |
| Msa0185350 | Msa1082690 | 0.801824 | 7.501900e-49 | -8.615850e-47 |
| Msa0185350 | Msa1083750 | 0.998111 | 2.065443e-256 | -8.615850e-47 |
| Msa0185350 | Msa1127190 | 0.829530 | 4.889325e-55 | -8.615850e-47 |
| Msa0185350 | Msa1127830 | 0.820326 | 7.277448e-53 | -8.615850e-47 |
| Msa0185350 | Msa1128660 | 0.997261 | 1.736258e-239 | -8.615850e-47 |
| Msa0185350 | Msa1131170 | 0.924863 | 3.984198e-90 | -8.615850e-47 |
| Msa0185350 | Msa1166410 | 0.800624 | 1.320775e-48 | -8.615850e-47 |
| Msa0185350 | Msa1206090 | 0.800930 | 1.143698e-48 | -8.615850e-47 |
| Msa0185350 | Msa1206850 | 0.807861 | 4.110044e-50 | -8.615850e-47 |
| Msa0185350 | Msa1257510 | 0.802668 | 5.029664e-49 | -8.615850e-47 |
| Msa0185350 | Msa1282240 | 0.820258 | 7.543425e-53 | -8.615850e-47 |
| Msa0185350 | Msa1329540 | 0.802099 | 6.587968e-49 | -8.615850e-47 |
| Msa0185350 | Msa1362020 | 0.820398 | 7.006747e-53 | -8.615850e-47 |
| Msa0185350 | Msa1363330 | 0.816575 | 5.152264e-52 | -8.615850e-47 |
| Msa0185350 | Msa1386600 | 0.817491 | 3.208448e-52 | -8.615850e-47 |
| Msa0185350 | Msa1442850 | 0.829056 | 6.372048e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185350 | MtrunA17_Chr7g0273011 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 9.50e-124 | 345 |
| Msa0185350 | MtrunA17_Chr3g0087791 | 82.036 | 167 | 30 | 0 | 1 | 167 | 1 | 167 | 4.24e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185350 | AT5G27430.1 | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.45e-101 | 289 |
| Msa0185350 | AT3G05230.1 | 75.449 | 167 | 41 | 0 | 1 | 167 | 1 | 167 | 5.97e-98 | 280 |
| Msa0185350 | AT3G05230.2 | 73.810 | 126 | 33 | 0 | 1 | 126 | 1 | 126 | 2.60e-69 | 206 |
Find 46 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAATAGCTTTCGAATAC+TGG | 0.245072 | 1_4:-75485113 | Msa0185350:three_prime_UTR |
| ACCTGATTCAAGGGTTTCTT+TGG | 0.249498 | 1_4:+75485861 | None:intergenic |
| AAATTCTCTACCACGCAAAT+TGG | 0.318602 | 1_4:+75485382 | None:intergenic |
| AGCATGACACTTAATATTTC+AGG | 0.320278 | 1_4:-75486065 | Msa0185350:CDS |
| AAACTTTGCATGCTCTTTAG+AGG | 0.327720 | 1_4:+75485535 | None:intergenic |
| TGTAGGTGTTGAATATTAAT+TGG | 0.336117 | 1_4:-75487772 | Msa0185350:intron |
| AGACAACCACAAGCAAATTT+CGG | 0.343664 | 1_4:+75485086 | None:intergenic |
| TAAATACCGTTTCATTGATC+AGG | 0.381152 | 1_4:-75485495 | Msa0185350:intron |
| ATCTATCTGTTTGATAAAAG+TGG | 0.408510 | 1_4:+75488041 | None:intergenic |
| AGAAGGAGATGGAGAATTGA+AGG | 0.420356 | 1_4:+75487896 | None:intergenic |
| CTTTATATCCCTTATAGAAA+AGG | 0.421029 | 1_4:+75485223 | None:intergenic |
| ACCAAAGAAACCCTTGAATC+AGG | 0.421703 | 1_4:-75485862 | Msa0185350:intron |
| ATCTGTATTCCCTGGGCAAT+CGG | 0.431457 | 1_4:+75485285 | None:intergenic |
| TAACCGAATGAATGCATTCT+CGG | 0.433139 | 1_4:+75487993 | None:intergenic |
| ATCTCCTTCTGCTCAAGTCC+AGG | 0.434481 | 1_4:-75487883 | Msa0185350:intron |
| TTGCTTTAAAGAAATAGATC+AGG | 0.435046 | 1_4:-75485198 | Msa0185350:three_prime_UTR |
| AATTACCTCGTCGTTACCGT+TGG | 0.465299 | 1_4:+75487736 | None:intergenic |
| ATTACCTCGTCGTTACCGTT+GGG | 0.472005 | 1_4:+75487737 | None:intergenic |
| GTTCACGTGGAACACAAAAC+AGG | 0.477621 | 1_4:-75486027 | Msa0185350:intron |
| AAGGCATCATCTGTATTCCC+TGG | 0.485485 | 1_4:+75485277 | None:intergenic |
| CATACATCATACCTGATTCA+AGG | 0.490102 | 1_4:+75485851 | None:intergenic |
| TCCCTGGGCAATCGGTAACC+TGG | 0.493808 | 1_4:+75485293 | None:intergenic |
| AACTTTGCATGCTCTTTAGA+GGG | 0.517084 | 1_4:+75485536 | None:intergenic |
| AAATATTGCGCTTTGGATGG+TGG | 0.521686 | 1_4:-75485170 | Msa0185350:three_prime_UTR |
| ACTCCGAGAATGCATTCATT+CGG | 0.527592 | 1_4:-75487996 | Msa0185350:exon |
| TGCCAGGTTACCGATTGCCC+AGG | 0.539181 | 1_4:-75485295 | Msa0185350:CDS |
| GGGAATGATACCATCCCAAA+GGG | 0.544276 | 1_4:+75485556 | None:intergenic |
| AATTTAACTTGACCTTGCAC+TGG | 0.545173 | 1_4:-75485364 | Msa0185350:CDS |
| TATATACCTGATCAATGAAA+CGG | 0.547986 | 1_4:+75485489 | None:intergenic |
| GCTGATAAAATAGTAATGCC+AGG | 0.552824 | 1_4:-75485311 | Msa0185350:CDS |
| TGGACTTGAGCAGAAGGAGA+TGG | 0.553502 | 1_4:+75487885 | None:intergenic |
| AGAAAATGTTAGCAAAGCGT+TGG | 0.554899 | 1_4:+75487965 | None:intergenic |
| GAGACCTGGACTTGAGCAGA+AGG | 0.562774 | 1_4:+75487879 | None:intergenic |
| TGGCATAACATGCCAGTGCA+AGG | 0.570110 | 1_4:+75485352 | None:intergenic |
| ATACATCATACCTGATTCAA+GGG | 0.573602 | 1_4:+75485852 | None:intergenic |
| TTACAGATATCCCTTTGGGA+TGG | 0.587335 | 1_4:-75485566 | Msa0185350:intron |
| TGCTTTAAAGAAATAGATCA+GGG | 0.588021 | 1_4:-75485197 | Msa0185350:three_prime_UTR |
| AGGCATCATCTGTATTCCCT+GGG | 0.600588 | 1_4:+75485278 | None:intergenic |
| GCCAGGTTACCGATTGCCCA+GGG | 0.602814 | 1_4:-75485294 | Msa0185350:CDS |
| AGGGAATGATACCATCCCAA+AGG | 0.633639 | 1_4:+75485555 | None:intergenic |
| GGAAATCCGAAATTTGCTTG+TGG | 0.651769 | 1_4:-75485092 | Msa0185350:three_prime_UTR |
| GTGGATAAAGAATTGAAACT+CGG | 0.664027 | 1_4:+75488060 | None:intergenic |
| ATTTACAGTCTCTGTTCACG+TGG | 0.665261 | 1_4:-75486040 | Msa0185350:CDS |
| GTACAGGGAACCAATTTGCG+TGG | 0.675868 | 1_4:-75485392 | Msa0185350:intron |
| ACAACCCAACGGTAACGACG+AGG | 0.716822 | 1_4:-75487741 | Msa0185350:intron |
| TGGTTTCAGAAACAACCCAA+CGG | 0.718343 | 1_4:-75487752 | Msa0185350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTATGTGT+AGG | - | chr1_4:75485352-75485371 | Msa0185350:CDS | 10.0% |
| !!! | TATACTGTTTTTTTTTTTTT+TGG | + | chr1_4:75486503-75486522 | None:intergenic | 10.0% |
| !!! | GTTTTTTGCAAATAAATAAA+AGG | + | chr1_4:75486616-75486635 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTGAA+TGG | - | chr1_4:75487001-75487020 | Msa0185350:intron | 15.0% |
| !! | AATAAATAAAAGGAGAGATT+GGG | + | chr1_4:75486606-75486625 | None:intergenic | 20.0% |
| !! | AAATAAATAAAAGGAGAGAT+TGG | + | chr1_4:75486607-75486626 | None:intergenic | 20.0% |
| !! | ATATGATACTCATAATAATG+TGG | + | chr1_4:75486912-75486931 | None:intergenic | 20.0% |
| !! | AATAAAGACAAAAAACTAAG+AGG | + | chr1_4:75487163-75487182 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTGTCTTTATTTC+AGG | - | chr1_4:75487165-75487184 | Msa0185350:intron | 20.0% |
| !!! | TTTAATCGCTTGTTATAAAA+AGG | + | chr1_4:75487380-75487399 | None:intergenic | 20.0% |
| !! | AAATAAAAAAGGCAAAGTTA+AGG | + | chr1_4:75487727-75487746 | None:intergenic | 20.0% |
| !!! | TAACTTTAACCTTTTCTATA+AGG | - | chr1_4:75487909-75487928 | Msa0185350:CDS | 20.0% |
| !!! | AACTTTAACCTTTTCTATAA+GGG | - | chr1_4:75487910-75487929 | Msa0185350:CDS | 20.0% |
| !!! | TTTTCTATAAGGGATATAAA+GGG | - | chr1_4:75487920-75487939 | Msa0185350:CDS | 20.0% |
| ! | ATCTATCTGTTTGATAAAAG+TGG | + | chr1_4:75485103-75485122 | None:intergenic | 25.0% |
| !!! | TGTAGGTGTTGAATATTAAT+TGG | - | chr1_4:75485369-75485388 | Msa0185350:CDS | 25.0% |
| ! | TTACTTTATCCTTATGTCTA+TGG | - | chr1_4:75485566-75485585 | Msa0185350:intron | 25.0% |
| !!! | TAATTGTGTCATTTAAGTTG+TGG | - | chr1_4:75485589-75485608 | Msa0185350:intron | 25.0% |
| ! | ATATACTGTAACATGAATCA+GGG | + | chr1_4:75485621-75485640 | None:intergenic | 25.0% |
| !! | ATGTGATTTTGAATTACTGA+AGG | - | chr1_4:75485702-75485721 | Msa0185350:intron | 25.0% |
| ! | TCCTATATATAAGAGAAAGT+TGG | - | chr1_4:75485796-75485815 | Msa0185350:intron | 25.0% |
| ! | CCTATATATAAGAGAAAGTT+GGG | - | chr1_4:75485797-75485816 | Msa0185350:intron | 25.0% |
| !!! | TATTGGTTCAAAATTTGGAT+CGG | + | chr1_4:75485843-75485862 | None:intergenic | 25.0% |
| !!! | TGATGTATTGGTTCAAAATT+TGG | + | chr1_4:75485848-75485867 | None:intergenic | 25.0% |
| ! | CCTAAATATAAGAGAAAGTT+GGG | + | chr1_4:75485882-75485901 | None:intergenic | 25.0% |
| ! | TCCTAAATATAAGAGAAAGT+TGG | + | chr1_4:75485883-75485902 | None:intergenic | 25.0% |
| ! | TACTACTTATATAGGGTATA+GGG | - | chr1_4:75485913-75485932 | Msa0185350:intron | 25.0% |
| ! | CACAATCAGTTGAAAAAATA+AGG | + | chr1_4:75486113-75486132 | None:intergenic | 25.0% |
| !!! | TTAGAAAGTGGGTTATATAA+GGG | - | chr1_4:75486275-75486294 | Msa0185350:intron | 25.0% |
| ! | AACAGTATAATTGTAGAACT+TGG | - | chr1_4:75486514-75486533 | Msa0185350:intron | 25.0% |
| ! | ATAAATAAAAGGAGAGATTG+GGG | + | chr1_4:75486605-75486624 | None:intergenic | 25.0% |
| !!! | CTACATACTTTTTTCAAAGA+TGG | - | chr1_4:75486851-75486870 | Msa0185350:intron | 25.0% |
| ! | TTTATTTCAGGACAAAAGTT+GGG | - | chr1_4:75487177-75487196 | Msa0185350:intron | 25.0% |
| ! | TATATACCTGATCAATGAAA+CGG | + | chr1_4:75487655-75487674 | None:intergenic | 25.0% |
| ! | ATCAGGTATATAACTCTTAT+AGG | - | chr1_4:75487663-75487682 | Msa0185350:intron | 25.0% |
| ! | CAAAAACATTAACATGACAA+AGG | + | chr1_4:75487886-75487905 | None:intergenic | 25.0% |
| ! | CTTTATATCCCTTATAGAAA+AGG | + | chr1_4:75487921-75487940 | None:intergenic | 25.0% |
| !! | CTTTTCTATAAGGGATATAA+AGG | - | chr1_4:75487919-75487938 | Msa0185350:CDS | 25.0% |
| !!! | TTGCTTTAAAGAAATAGATC+AGG | - | chr1_4:75487943-75487962 | Msa0185350:CDS | 25.0% |
| !!! | TGCTTTAAAGAAATAGATCA+GGG | - | chr1_4:75487944-75487963 | Msa0185350:CDS | 25.0% |
| GTGGATAAAGAATTGAAACT+CGG | + | chr1_4:75485084-75485103 | None:intergenic | 30.0% | |
| ACACAATTACCATAGACATA+AGG | + | chr1_4:75485578-75485597 | None:intergenic | 30.0% | |
| CATATACTGTAACATGAATC+AGG | + | chr1_4:75485622-75485641 | None:intergenic | 30.0% | |
| TTCATGTTACAGTATATGCA+AGG | - | chr1_4:75485624-75485643 | Msa0185350:intron | 30.0% | |
| CTATAGTTATAAACTCCATC+CGG | - | chr1_4:75485773-75485792 | Msa0185350:intron | 30.0% | |
| CTTTCTCTTATATATAGGAC+CGG | + | chr1_4:75485795-75485814 | None:intergenic | 30.0% | |
| CCCAACTTTCTCTTATATAT+AGG | + | chr1_4:75485800-75485819 | None:intergenic | 30.0% | |
| TTGGGTCAACAAAAGTTAAT+GGG | - | chr1_4:75485815-75485834 | Msa0185350:intron | 30.0% | |
| ! | ATTGGTTCAAAATTTGGATC+GGG | + | chr1_4:75485842-75485861 | None:intergenic | 30.0% |
| CCCAACTTTCTCTTATATTT+AGG | - | chr1_4:75485879-75485898 | Msa0185350:CDS | 30.0% | |
| ! | CTTTCTCTTATATTTAGGAC+TGG | - | chr1_4:75485884-75485903 | Msa0185350:CDS | 30.0% |
| GTACTACTTATATAGGGTAT+AGG | - | chr1_4:75485912-75485931 | Msa0185350:intron | 30.0% | |
| ! | TTGCTTCATAAGACTCTTTT+TGG | + | chr1_4:75485997-75486016 | None:intergenic | 30.0% |
| GGTATATGACTTCACATATA+AGG | + | chr1_4:75486051-75486070 | None:intergenic | 30.0% | |
| ACATAAACCCTCTTAATCAA+GGG | + | chr1_4:75486160-75486179 | None:intergenic | 30.0% | |
| AACATAAACCCTCTTAATCA+AGG | + | chr1_4:75486161-75486180 | None:intergenic | 30.0% | |
| TGATTAAGAGGGTTTATGTT+AGG | - | chr1_4:75486161-75486180 | Msa0185350:intron | 30.0% | |
| TAACATCTTTCGTAACAATC+TGG | + | chr1_4:75486232-75486251 | None:intergenic | 30.0% | |
| AGATTGTTACGAAAGATGTT+AGG | - | chr1_4:75486231-75486250 | Msa0185350:intron | 30.0% | |
| GATTGTTACGAAAGATGTTA+GGG | - | chr1_4:75486232-75486251 | Msa0185350:intron | 30.0% | |
| TCAGTTGAAAAGTTAGAAAG+TGG | - | chr1_4:75486263-75486282 | Msa0185350:intron | 30.0% | |
| CAGTTGAAAAGTTAGAAAGT+GGG | - | chr1_4:75486264-75486283 | Msa0185350:intron | 30.0% | |
| !! | GTTAGAAAGTGGGTTATATA+AGG | - | chr1_4:75486274-75486293 | Msa0185350:intron | 30.0% |
| ! | GCAATTCTTTCTGTTTTCTA+AGG | - | chr1_4:75486404-75486423 | Msa0185350:intron | 30.0% |
| AGTATAATTGTAGAACTTGG+AGG | - | chr1_4:75486517-75486536 | Msa0185350:intron | 30.0% | |
| GTATAATTGTAGAACTTGGA+GGG | - | chr1_4:75486518-75486537 | Msa0185350:intron | 30.0% | |
| TAAATAAAAGGAGAGATTGG+GGG | + | chr1_4:75486604-75486623 | None:intergenic | 30.0% | |
| AGGAAGATAGTGAAGAAATA+AGG | + | chr1_4:75486638-75486657 | None:intergenic | 30.0% | |
| ACTATCTTCCTTACTAACTA+AGG | - | chr1_4:75486647-75486666 | Msa0185350:intron | 30.0% | |
| TACATCGAATCTTTCAGATT+TGG | + | chr1_4:75486708-75486727 | None:intergenic | 30.0% | |
| ATTTACATACAACAGACAAG+AGG | - | chr1_4:75486758-75486777 | Msa0185350:intron | 30.0% | |
| AAATCATAGCTGGAAATTGT+TGG | - | chr1_4:75486807-75486826 | Msa0185350:intron | 30.0% | |
| AATTGTTGGAAACATCATGT+TGG | - | chr1_4:75486821-75486840 | Msa0185350:intron | 30.0% | |
| GATACTCATAATAATGTGGT+AGG | + | chr1_4:75486908-75486927 | None:intergenic | 30.0% | |
| GACATTGAATATCAGAGAAA+GGG | + | chr1_4:75486967-75486986 | None:intergenic | 30.0% | |
| TGACATTGAATATCAGAGAA+AGG | + | chr1_4:75486968-75486987 | None:intergenic | 30.0% | |
| ATTCGTTGTTCAAACTGAAA+TGG | - | chr1_4:75487030-75487049 | Msa0185350:intron | 30.0% | |
| AGCATGACACTTAATATTTC+AGG | - | chr1_4:75487076-75487095 | Msa0185350:intron | 30.0% | |
| ! | CTTTATTTCAGGACAAAAGT+TGG | - | chr1_4:75487176-75487195 | Msa0185350:intron | 30.0% |
| TTATTTCAGGACAAAAGTTG+GGG | - | chr1_4:75487178-75487197 | Msa0185350:intron | 30.0% | |
| ! | GGAAGAAAGGAAACTAATTT+TGG | - | chr1_4:75487199-75487218 | Msa0185350:intron | 30.0% |
| ATACATCATACCTGATTCAA+GGG | + | chr1_4:75487292-75487311 | None:intergenic | 30.0% | |
| AAGCGATTAAAAGAAAGACA+TGG | - | chr1_4:75487389-75487408 | Msa0185350:intron | 30.0% | |
| AAAGAAAGACATGGTAATAG+TGG | - | chr1_4:75487398-75487417 | Msa0185350:intron | 30.0% | |
| AAGAAAGACATGGTAATAGT+GGG | - | chr1_4:75487399-75487418 | Msa0185350:intron | 30.0% | |
| ! | CATTTTACAGATATCCCTTT+GGG | - | chr1_4:75487571-75487590 | Msa0185350:intron | 30.0% |
| TAAATACCGTTTCATTGATC+AGG | - | chr1_4:75487646-75487665 | Msa0185350:intron | 30.0% | |
| GAATTACCTCAGATTTCTTT+AGG | - | chr1_4:75487701-75487720 | Msa0185350:intron | 30.0% | |
| !!! | TGCCTTTTTTATTTGTGTAC+AGG | - | chr1_4:75487733-75487752 | Msa0185350:intron | 30.0% |
| !!! | GCCTTTTTTATTTGTGTACA+GGG | - | chr1_4:75487734-75487753 | Msa0185350:intron | 30.0% |
| TCCCTGTACACAAATAAAAA+AGG | + | chr1_4:75487738-75487757 | None:intergenic | 30.0% | |
| ! | AAAAAATATTGCGCTTTGGA+TGG | - | chr1_4:75487968-75487987 | Msa0185350:CDS | 30.0% |
| TAACCGAATGAATGCATTCT+CGG | + | chr1_4:75485151-75485170 | None:intergenic | 35.0% | |
| AGAAAATGTTAGCAAAGCGT+TGG | + | chr1_4:75485179-75485198 | None:intergenic | 35.0% | |
| TCTTCCTAGACAATACCATT+GGG | + | chr1_4:75485738-75485757 | None:intergenic | 35.0% | |
| GTTGGGTCAACAAAAGTTAA+TGG | - | chr1_4:75485814-75485833 | Msa0185350:intron | 35.0% | |
| !! | GTCAACAAGAGTTGATGTAT+TGG | + | chr1_4:75485860-75485879 | None:intergenic | 35.0% |
| ! | TCTCTTATATTTAGGACTGG+AGG | - | chr1_4:75485887-75485906 | Msa0185350:CDS | 35.0% |
| ! | CTCTTATATTTAGGACTGGA+GGG | - | chr1_4:75485888-75485907 | Msa0185350:CDS | 35.0% |
| !! | GAGGGAGTACTACTTATATA+GGG | - | chr1_4:75485906-75485925 | Msa0185350:intron | 35.0% |
| TATAGGGTATAGGGTATGAA+AGG | - | chr1_4:75485922-75485941 | Msa0185350:intron | 35.0% | |
| TGACTTCACATATAAGGCAA+GGG | + | chr1_4:75486045-75486064 | None:intergenic | 35.0% | |
| ATGACTTCACATATAAGGCA+AGG | + | chr1_4:75486046-75486065 | None:intergenic | 35.0% | |
| TGAAGTCATATACCTTCTGT+TGG | - | chr1_4:75486057-75486076 | Msa0185350:CDS | 35.0% | |
| TGCTGAATAAACAGTGTAGT+CGG | - | chr1_4:75486363-75486382 | Msa0185350:intron | 35.0% | |
| ! | ATATATCAAGCACTGTGAAC+CGG | + | chr1_4:75486443-75486462 | None:intergenic | 35.0% |
| TTTGAAAGATACGAGGTCTT+TGG | + | chr1_4:75486566-75486585 | None:intergenic | 35.0% | |
| ! | CTTGTCATTTGAAAGATACG+AGG | + | chr1_4:75486573-75486592 | None:intergenic | 35.0% |
| TCTTCCTTACTAACTAAGGA+AGG | - | chr1_4:75486651-75486670 | Msa0185350:intron | 35.0% | |
| GTAGTTTGACGACTTCTAAT+AGG | + | chr1_4:75486683-75486702 | None:intergenic | 35.0% | |
| ATCGAATCTTTCAGATTTGG+AGG | + | chr1_4:75486705-75486724 | None:intergenic | 35.0% | |
| ATTCGATGTAATTGCTTCAG+AGG | - | chr1_4:75486718-75486737 | Msa0185350:intron | 35.0% | |
| AAACAGGTCAAAATCATAGC+TGG | - | chr1_4:75486797-75486816 | Msa0185350:intron | 35.0% | |
| ACTCATAATAATGTGGTAGG+CGG | + | chr1_4:75486905-75486924 | None:intergenic | 35.0% | |
| ! | TTTTCATTTACCAGCTCGTT+TGG | - | chr1_4:75486939-75486958 | Msa0185350:intron | 35.0% |
| !! | GGAAGCATTATTATTCTTGC+AGG | - | chr1_4:75487051-75487070 | Msa0185350:intron | 35.0% |
| ! | TGCTTCTTTTCTATGCTTTC+AGG | - | chr1_4:75487225-75487244 | Msa0185350:intron | 35.0% |
| CATACATCATACCTGATTCA+AGG | + | chr1_4:75487293-75487312 | None:intergenic | 35.0% | |
| ATCAGGTATGATGTATGCTT+TGG | - | chr1_4:75487296-75487315 | Msa0185350:intron | 35.0% | |
| AGTTGGCAAGCTTCAAATTT+AGG | + | chr1_4:75487357-75487376 | None:intergenic | 35.0% | |
| !! | CGCTTGTTATAAAAAGGAGT+TGG | + | chr1_4:75487374-75487393 | None:intergenic | 35.0% |
| CCAAAGGGATATCTGTAAAA+TGG | + | chr1_4:75487573-75487592 | None:intergenic | 35.0% | |
| ! | CCATTTTACAGATATCCCTT+TGG | - | chr1_4:75487570-75487589 | Msa0185350:intron | 35.0% |
| AACTTTGCATGCTCTTTAGA+GGG | + | chr1_4:75487608-75487627 | None:intergenic | 35.0% | |
| AAACTTTGCATGCTCTTTAG+AGG | + | chr1_4:75487609-75487628 | None:intergenic | 35.0% | |
| TTAAGGCCTAAAGAAATCTG+AGG | + | chr1_4:75487710-75487729 | None:intergenic | 35.0% | |
| AAATTCTCTACCACGCAAAT+TGG | + | chr1_4:75487762-75487781 | None:intergenic | 35.0% | |
| !! | AATTTAACTTGACCTTGCAC+TGG | - | chr1_4:75487777-75487796 | Msa0185350:intron | 35.0% |
| GCCAAAAACTGGAAAAATGT+TGG | - | chr1_4:75487808-75487827 | Msa0185350:intron | 35.0% | |
| ! | GCCAACATTTTTCCAGTTTT+TGG | + | chr1_4:75487812-75487831 | None:intergenic | 35.0% |
| GCTGATAAAATAGTAATGCC+AGG | - | chr1_4:75487830-75487849 | Msa0185350:intron | 35.0% | |
| GGGAAAAAAATATTGCGCTT+TGG | - | chr1_4:75487964-75487983 | Msa0185350:CDS | 35.0% | |
| GAGAAATAGCTTTCGAATAC+TGG | - | chr1_4:75488028-75488047 | Msa0185350:five_prime_UTR | 35.0% | |
| AGACAACCACAAGCAAATTT+CGG | + | chr1_4:75488058-75488077 | None:intergenic | 35.0% | |
| ACTCCGAGAATGCATTCATT+CGG | - | chr1_4:75485145-75485164 | Msa0185350:three_prime_UTR | 40.0% | |
| AGAAGGAGATGGAGAATTGA+AGG | + | chr1_4:75485248-75485267 | None:intergenic | 40.0% | |
| TGGTTTCAGAAACAACCCAA+CGG | - | chr1_4:75485389-75485408 | Msa0185350:CDS | 40.0% | |
| AATCCCCAATGGTATTGTCT+AGG | - | chr1_4:75485731-75485750 | Msa0185350:intron | 40.0% | |
| CTTCCTAGACAATACCATTG+GGG | + | chr1_4:75485737-75485756 | None:intergenic | 40.0% | |
| CTCTTCCTAGACAATACCAT+TGG | + | chr1_4:75485739-75485758 | None:intergenic | 40.0% | |
| CTCTTATATATAGGACCGGA+TGG | + | chr1_4:75485791-75485810 | None:intergenic | 40.0% | |
| !! | GGAGGGAGTACTACTTATAT+AGG | - | chr1_4:75485905-75485924 | Msa0185350:intron | 40.0% |
| ACCACAACCCTTGATTAAGA+GGG | - | chr1_4:75486150-75486169 | Msa0185350:intron | 40.0% | |
| TTATGTTAGGCGAAAGAAGC+AGG | - | chr1_4:75486174-75486193 | Msa0185350:intron | 40.0% | |
| ! | CGGATGGTACCTTGTATTTT+GGG | - | chr1_4:75486313-75486332 | Msa0185350:intron | 40.0% |
| AGGAATGCTCCCAAAATACA+AGG | + | chr1_4:75486325-75486344 | None:intergenic | 40.0% | |
| !!! | TATTTTGGGAGCATTCCTGT+GGG | - | chr1_4:75486327-75486346 | Msa0185350:intron | 40.0% |
| CTCTCCTTCCTTAGTTAGTA+AGG | + | chr1_4:75486658-75486677 | None:intergenic | 40.0% | |
| TACTTGTGTGTGCATGAAAC+AGG | - | chr1_4:75486781-75486800 | Msa0185350:intron | 40.0% | |
| ATTTACAGTCTCTGTTCACG+TGG | - | chr1_4:75487101-75487120 | Msa0185350:intron | 40.0% | |
| ACCAAAGAAACCCTTGAATC+AGG | - | chr1_4:75487279-75487298 | Msa0185350:intron | 40.0% | |
| ACCTGATTCAAGGGTTTCTT+TGG | + | chr1_4:75487283-75487302 | None:intergenic | 40.0% | |
| !! | AAGACATGGTAATAGTGGGT+TGG | - | chr1_4:75487403-75487422 | Msa0185350:intron | 40.0% |
| !! | TGCTGCATTTCTGTCACTTT+CGG | - | chr1_4:75487509-75487528 | Msa0185350:intron | 40.0% |
| ! | TTACAGATATCCCTTTGGGA+TGG | - | chr1_4:75487575-75487594 | Msa0185350:intron | 40.0% |
| TGGCATGTTATGCCAAAAAC+TGG | - | chr1_4:75487797-75487816 | Msa0185350:intron | 40.0% | |
| ! | AAATATTGCGCTTTGGATGG+TGG | - | chr1_4:75487971-75487990 | Msa0185350:CDS | 40.0% |
| ! | GGAAATCCGAAATTTGCTTG+TGG | - | chr1_4:75488049-75488068 | Msa0185350:five_prime_UTR | 40.0% |
| GAAAGAGAAGAGAAGAGACC+TGG | + | chr1_4:75485279-75485298 | None:intergenic | 45.0% | |
| ATTACCTCGTCGTTACCGTT+GGG | + | chr1_4:75485407-75485426 | None:intergenic | 45.0% | |
| AATTACCTCGTCGTTACCGT+TGG | + | chr1_4:75485408-75485427 | None:intergenic | 45.0% | |
| ! | GAAGGAGTGTAAATCCCCAA+TGG | - | chr1_4:75485720-75485739 | Msa0185350:intron | 45.0% |
| TACCCTTCCTTGAGCACTTT+GGG | + | chr1_4:75485960-75485979 | None:intergenic | 45.0% | |
| AGGAAGGGTAGTATGTGATG+TGG | - | chr1_4:75485970-75485989 | Msa0185350:intron | 45.0% | |
| GACCACAACCCTTGATTAAG+AGG | - | chr1_4:75486149-75486168 | Msa0185350:intron | 45.0% | |
| ACCCTCTTAATCAAGGGTTG+TGG | + | chr1_4:75486154-75486173 | None:intergenic | 45.0% | |
| GCGAAAGAAGCAGGTTACAA+GGG | - | chr1_4:75486183-75486202 | Msa0185350:intron | 45.0% | |
| AAGGGAAGTTACCAAGAGAG+CGG | - | chr1_4:75486293-75486312 | Msa0185350:intron | 45.0% | |
| ! | GCGGATGGTACCTTGTATTT+TGG | - | chr1_4:75486312-75486331 | Msa0185350:intron | 45.0% |
| !!! | GTATTTTGGGAGCATTCCTG+TGG | - | chr1_4:75486326-75486345 | Msa0185350:intron | 45.0% |
| CTAAGGCCAGTTCTATTCAC+CGG | - | chr1_4:75486421-75486440 | Msa0185350:intron | 45.0% | |
| TGTGAACCGGTGAATAGAAC+TGG | + | chr1_4:75486430-75486449 | None:intergenic | 45.0% | |
| CACAGTTATACTGCTTGGGA+AGG | + | chr1_4:75486477-75486496 | None:intergenic | 45.0% | |
| CTTCCCAAGCAGTATAACTG+TGG | - | chr1_4:75486475-75486494 | Msa0185350:intron | 45.0% | |
| GCTCCACAGTTATACTGCTT+GGG | + | chr1_4:75486481-75486500 | None:intergenic | 45.0% | |
| AGATACGAGGTCTTTGGCTA+GGG | + | chr1_4:75486560-75486579 | None:intergenic | 45.0% | |
| AAGATACGAGGTCTTTGGCT+AGG | + | chr1_4:75486561-75486580 | None:intergenic | 45.0% | |
| TAAAAGGAGAGATTGGGGGA+AGG | + | chr1_4:75486600-75486619 | None:intergenic | 45.0% | |
| GTTCACGTGGAACACAAAAC+AGG | - | chr1_4:75487114-75487133 | Msa0185350:intron | 45.0% | |
| GGACAAAAGTTGGGGAAGAA+AGG | - | chr1_4:75487186-75487205 | Msa0185350:intron | 45.0% | |
| !! | TGGGTTGGTCATTGTTGAGA+TGG | - | chr1_4:75487418-75487437 | Msa0185350:intron | 45.0% |
| GGGAATGATACCATCCCAAA+GGG | + | chr1_4:75487588-75487607 | None:intergenic | 45.0% | |
| AGGGAATGATACCATCCCAA+AGG | + | chr1_4:75487589-75487608 | None:intergenic | 45.0% | |
| ATCTGTATTCCCTGGGCAAT+CGG | + | chr1_4:75487859-75487878 | None:intergenic | 45.0% | |
| AGGCATCATCTGTATTCCCT+GGG | + | chr1_4:75487866-75487885 | None:intergenic | 45.0% | |
| ! | AAGGCATCATCTGTATTCCC+TGG | + | chr1_4:75487867-75487886 | None:intergenic | 45.0% |
| !! | AAATAAAAATTAACAAAAAA+GGG | + | chr1_4:75485338-75485357 | None:intergenic | 5.0% |
| !! | AAAATAAAAATTAACAAAAA+AGG | + | chr1_4:75485339-75485358 | None:intergenic | 5.0% |
| TGGACTTGAGCAGAAGGAGA+TGG | + | chr1_4:75485259-75485278 | None:intergenic | 50.0% | |
| ATCTCCTTCTGCTCAAGTCC+AGG | - | chr1_4:75485258-75485277 | Msa0185350:three_prime_UTR | 50.0% | |
| ! | CTTCCTTGAGCACTTTGGGA+GGG | + | chr1_4:75485956-75485975 | None:intergenic | 50.0% |
| ! | CTCCCAAAGTGCTCAAGGAA+GGG | - | chr1_4:75485955-75485974 | Msa0185350:intron | 50.0% |
| CTACCCTTCCTTGAGCACTT+TGG | + | chr1_4:75485961-75485980 | None:intergenic | 50.0% | |
| GAGTGAGAGTCTCCAACAGA+AGG | + | chr1_4:75486072-75486091 | None:intergenic | 50.0% | |
| AGGGTTGTGGTCTATCGCAT+TGG | + | chr1_4:75486141-75486160 | None:intergenic | 50.0% | |
| GGCGAAAGAAGCAGGTTACA+AGG | - | chr1_4:75486182-75486201 | Msa0185350:intron | 50.0% | |
| GAAGTTACCAAGAGAGCGGA+TGG | - | chr1_4:75486297-75486316 | Msa0185350:intron | 50.0% | |
| GCATTCCTGTGGGTAAAGTC+TGG | - | chr1_4:75486337-75486356 | Msa0185350:intron | 50.0% | |
| GGCTCCACAGTTATACTGCT+TGG | + | chr1_4:75486482-75486501 | None:intergenic | 50.0% | |
| AGAAAGGGATCCAAACGAGC+TGG | + | chr1_4:75486952-75486971 | None:intergenic | 50.0% | |
| GTACAGGGAACCAATTTGCG+TGG | - | chr1_4:75487749-75487768 | Msa0185350:CDS | 50.0% | |
| TGGCATAACATGCCAGTGCA+AGG | + | chr1_4:75487792-75487811 | None:intergenic | 50.0% | |
| GAGACCTGGACTTGAGCAGA+AGG | + | chr1_4:75485265-75485284 | None:intergenic | 55.0% | |
| ACAACCCAACGGTAACGACG+AGG | - | chr1_4:75485400-75485419 | Msa0185350:intron | 55.0% | |
| ! | ACTCCCTCCCAAAGTGCTCA+AGG | - | chr1_4:75485950-75485969 | Msa0185350:intron | 55.0% |
| CCTTCCTTGAGCACTTTGGG+AGG | + | chr1_4:75485957-75485976 | None:intergenic | 55.0% | |
| ! | CCTCCCAAAGTGCTCAAGGA+AGG | - | chr1_4:75485954-75485973 | Msa0185350:intron | 55.0% |
| ! | CAAGGTACCATCCGCTCTCT+TGG | + | chr1_4:75486307-75486326 | None:intergenic | 55.0% |
| CAGAGCCAGACTTTACCCAC+AGG | + | chr1_4:75486345-75486364 | None:intergenic | 55.0% | |
| TACGAGGTCTTTGGCTAGGG+AGG | + | chr1_4:75486557-75486576 | None:intergenic | 55.0% | |
| CTGCTTGGGAAGGAGAAGCG+AGG | + | chr1_4:75486467-75486486 | None:intergenic | 60.0% | |
| ! | TGCCAGGTTACCGATTGCCC+AGG | - | chr1_4:75487846-75487865 | Msa0185350:intron | 60.0% |
| ! | GCCAGGTTACCGATTGCCCA+GGG | - | chr1_4:75487847-75487866 | Msa0185350:intron | 60.0% |
| TCCCTGGGCAATCGGTAACC+TGG | + | chr1_4:75487851-75487870 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 75485081 | 75488082 | 75485081 | ID=Msa0185350;Name=Msa0185350 |
| chr1_4 | mRNA | 75485081 | 75488082 | 75485081 | ID=Msa0185350-mRNA-1;Parent=Msa0185350;Name=Msa0185350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|1|1|1|1|6|202|167 |
| chr1_4 | exon | 75485081 | 75485408 | 75485081 | ID=Msa0185350-mRNA-1:exon:25709;Parent=Msa0185350-mRNA-1 |
| chr1_4 | exon | 75485496 | 75485582 | 75485496 | ID=Msa0185350-mRNA-1:exon:25708;Parent=Msa0185350-mRNA-1 |
| chr1_4 | exon | 75485863 | 75485916 | 75485863 | ID=Msa0185350-mRNA-1:exon:25707;Parent=Msa0185350-mRNA-1 |
| chr1_4 | exon | 75486028 | 75486090 | 75486028 | ID=Msa0185350-mRNA-1:exon:25706;Parent=Msa0185350-mRNA-1 |
| chr1_4 | exon | 75487742 | 75487789 | 75487742 | ID=Msa0185350-mRNA-1:exon:25705;Parent=Msa0185350-mRNA-1 |
| chr1_4 | exon | 75487884 | 75488082 | 75487884 | ID=Msa0185350-mRNA-1:exon:25704;Parent=Msa0185350-mRNA-1 |
| chr1_4 | five_prime_UTR | 75488010 | 75488082 | 75488010 | ID=Msa0185350-mRNA-1:five_prime_utr;Parent=Msa0185350-mRNA-1 |
| chr1_4 | CDS | 75487884 | 75488009 | 75487884 | ID=Msa0185350-mRNA-1:cds;Parent=Msa0185350-mRNA-1 |
| chr1_4 | CDS | 75487742 | 75487789 | 75487742 | ID=Msa0185350-mRNA-1:cds;Parent=Msa0185350-mRNA-1 |
| chr1_4 | CDS | 75486028 | 75486090 | 75486028 | ID=Msa0185350-mRNA-1:cds;Parent=Msa0185350-mRNA-1 |
| chr1_4 | CDS | 75485863 | 75485916 | 75485863 | ID=Msa0185350-mRNA-1:cds;Parent=Msa0185350-mRNA-1 |
| chr1_4 | CDS | 75485496 | 75485582 | 75485496 | ID=Msa0185350-mRNA-1:cds;Parent=Msa0185350-mRNA-1 |
| chr1_4 | CDS | 75485283 | 75485408 | 75485283 | ID=Msa0185350-mRNA-1:cds;Parent=Msa0185350-mRNA-1 |
| chr1_4 | three_prime_UTR | 75485081 | 75485282 | 75485081 | ID=Msa0185350-mRNA-1:three_prime_utr;Parent=Msa0185350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
