AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041900 MtrunA17_Chr7g0265831 95.417 480 14 3 23 499 1 475 0.0 954
Msa1041900 MtrunA17_Chr1g0179191 52.290 524 146 17 39 498 27 510 1.29e-152 445
Msa1041900 MtrunA17_Chr1g0198171 38.161 435 209 16 39 435 10 422 1.95e-79 256
Msa1041900 MtrunA17_Chr1g0201941 37.209 301 134 4 141 387 57 356 8.30e-49 177
Msa1041900 MtrunA17_Chr1g0201941 43.000 100 54 3 132 230 446 543 5.52e-18 87.0
Msa1041900 MtrunA17_Chr1g0201911 35.556 270 143 4 141 389 55 314 4.40e-39 149
Msa1041900 MtrunA17_Chr1g0201911 41.732 127 62 4 130 255 361 476 3.43e-20 94.0
Msa1041900 MtrunA17_Chr6g0463941 64.423 104 31 3 134 235 46 145 2.57e-34 136
Msa1041900 MtrunA17_Chr6g0463941 44.330 97 52 2 137 232 460 555 4.11e-19 90.5
Msa1041900 MtrunA17_Chr1g0190851 26.648 349 199 12 48 388 29 328 5.71e-16 80.5
Msa1041900 MtrunA17_Chr1g0190851 37.634 93 54 3 141 230 418 509 1.85e-11 66.6
Msa1041900 MtrunA17_Chr7g0273941 33.588 131 65 4 110 230 361 479 2.90e-14 75.1
Msa1041900 MtrunA17_Chr2g0290511 32.812 128 82 3 104 228 223 349 2.10e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041900 AT5G03680.1 45.972 422 165 12 23 409 1 394 3.97e-94 298
Msa1041900 AT3G10000.1 39.872 469 223 11 69 499 34 481 1.61e-91 287
Msa1041900 AT3G10000.2 38.166 469 221 12 69 499 34 471 1.08e-81 261
Msa1041900 AT1G76890.2 34.727 311 141 7 134 388 34 338 3.65e-41 155
Msa1041900 AT1G76890.2 39.437 142 73 3 134 274 390 519 2.95e-20 94.4
Msa1041900 AT1G76880.1 55.856 111 43 2 121 231 46 150 1.41e-30 125
Msa1041900 AT1G76880.1 43.000 100 55 2 134 232 401 499 1.81e-17 85.9
Msa1041900 AT1G33240.3 60.606 99 35 2 141 239 62 156 4.69e-30 124
Msa1041900 AT1G33240.3 43.820 89 48 2 141 228 435 522 2.54e-16 82.4
Msa1041900 AT1G33240.1 60.606 99 35 2 141 239 62 156 6.39e-30 124
Msa1041900 AT1G33240.1 43.820 89 48 2 141 228 435 522 2.47e-16 82.4
Msa1041900 AT1G33240.2 43.820 89 48 2 141 228 396 483 2.45e-16 82.4
Msa1041900 AT1G33240.2 64.407 59 18 1 181 239 62 117 2.84e-15 79.0
Msa1041900 AT5G28300.1 38.614 101 50 4 141 230 459 558 1.59e-12 70.5
Msa1041900 AT5G47660.1 41.758 91 45 4 141 228 303 388 1.44e-11 66.6

Find 114 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATATTATTACTTATT+AGG 0.192936 7_1:-79582533 Msa1041900:three_prime_UTR
GCAAAGCATAAATGATAATT+AGG 0.220249 7_1:+79582311 None:intergenic
AGCTAGGGATGCTGCTTTAA+TGG 0.226192 7_1:-79583011 Msa1041900:CDS
ATTATTGCTTTCTCCATATA+AGG 0.243458 7_1:+79583456 None:intergenic
CGTCAACTTGAAGCCTTATA+TGG 0.244935 7_1:-79583469 Msa1041900:CDS
TATTACTTATTAGGTAATTA+AGG 0.265081 7_1:-79582524 Msa1041900:three_prime_UTR
AAACTTCAACTCACTGGTTT+TGG 0.276459 7_1:+79582645 None:intergenic
TACTATCATAGTGTTGATTA+TGG 0.322614 7_1:+79584735 None:intergenic
TGATTCACAGCTGAAGAAAT+TGG 0.325251 7_1:-79583188 Msa1041900:CDS
TTGGGGTATGACACTAATTC+AGG 0.332866 7_1:-79582349 Msa1041900:three_prime_UTR
CTCTTTGGGATCAACTTTCT+AGG 0.339621 7_1:-79584310 Msa1041900:intron
GCTTCAACTCCTTCATTTAG+TGG 0.343719 7_1:-79584470 Msa1041900:CDS
TATATTATAAGATAAGAAAA+AGG 0.352475 7_1:+79584837 None:intergenic
TTCAAAGAAGCTACTCAAAA+AGG 0.354316 7_1:-79584335 Msa1041900:CDS
GGAGTAGTGGAAGAAGCTTC+TGG 0.362256 7_1:-79583234 Msa1041900:CDS
TTGATCATTAACATCACAAT+AGG 0.364480 7_1:+79582811 None:intergenic
TTATGCTTTGCAAATGGATC+TGG 0.367317 7_1:-79582299 Msa1041900:three_prime_UTR
CATACCCCAACAACACTTGA+TGG 0.388209 7_1:+79582362 None:intergenic
AAATTGTTGGTAGTTGATCT+TGG 0.391857 7_1:+79584674 None:intergenic
ATTCAATTATCTCATGGAAA+TGG 0.397721 7_1:-79584762 Msa1041900:CDS
CACAAAGACATTGGAACAAA+AGG 0.401812 7_1:-79583134 Msa1041900:CDS
GTGTTGTTGATGTGGGTTGC+CGG 0.402706 7_1:+79584628 None:intergenic
ATATTCCATCAAGTGTTGTT+GGG 0.413234 7_1:-79582367 Msa1041900:three_prime_UTR
TGTTGATGTGGGTTGCCGGC+GGG 0.415527 7_1:+79584632 None:intergenic
AATGATATGTAATTCATGTA+TGG 0.419239 7_1:-79582241 Msa1041900:three_prime_UTR
TATCATTTATGCTTTGCAAA+TGG 0.427237 7_1:-79582305 Msa1041900:three_prime_UTR
GAAACAAGAGAAAGAAAGGT+TGG 0.430312 7_1:-79583077 Msa1041900:CDS
CCCTCAGTACTCATCAAGAA+TGG 0.434497 7_1:+79582713 None:intergenic
TGTGGGAGTGAAGATGAAGA+AGG 0.446001 7_1:+79583433 None:intergenic
GGAGGAAACAAGAGAAAGAA+AGG 0.446373 7_1:-79583081 Msa1041900:CDS
GCTGAAACTACTGGTTTCAT+TGG 0.454310 7_1:-79584437 Msa1041900:CDS
TTTGGGCTAAAGAAAGAGCT+TGG 0.456386 7_1:-79583039 Msa1041900:CDS
ATACTATTGAAAGTTGAGAT+AGG 0.456436 7_1:+79584788 None:intergenic
ATGGGGACCATTACCCTTGT+TGG 0.461250 7_1:-79584989 Msa1041900:five_prime_UTR
ATTGGTGTTGATGCTTCAAC+TGG 0.466336 7_1:-79584419 Msa1041900:CDS
AAACATTTCCTGATTGTTGT+TGG 0.473343 7_1:+79583396 None:intergenic
GGAGAAGCAAGAAGAATGGT+TGG 0.477059 7_1:-79583164 Msa1041900:CDS
AAAGAGCTTGGATTGAAGCT+AGG 0.477669 7_1:-79583027 Msa1041900:CDS
TATATTCCATCAAGTGTTGT+TGG 0.481226 7_1:-79582368 Msa1041900:three_prime_UTR
TATCACAGTGTTTGTTAATG+TGG 0.481655 7_1:+79583368 None:intergenic
GGAAAAGCAGGAAGACAAGA+TGG 0.483853 7_1:-79583511 Msa1041900:CDS
GTGGGAGAATTACAACTTGA+AGG 0.483975 7_1:-79582681 Msa1041900:CDS
GTTGTGAAACTTCAACTCAC+TGG 0.485337 7_1:+79582639 None:intergenic
ATTAAGACCAACAAGGGTAA+TGG 0.488890 7_1:+79584982 None:intergenic
AAGACCAAGGAAGGAAAAGC+AGG 0.489921 7_1:-79583523 Msa1041900:CDS
TGAGTAGCTTCTTTGAATTG+AGG 0.494836 7_1:+79584341 None:intergenic
ATCTCATAGTGTTGTTGATG+TGG 0.498646 7_1:+79584620 None:intergenic
TATAATGTTAACAATGGAGA+TGG 0.503073 7_1:-79582842 Msa1041900:CDS
AATGATCAAAGGGAAGAACT+TGG 0.504968 7_1:-79582797 Msa1041900:CDS
ACTCAATCTTCTTCTCATGA+TGG 0.508615 7_1:-79582944 Msa1041900:CDS
AATTTAGAAGCTGAAACTAC+TGG 0.509455 7_1:-79584446 Msa1041900:CDS
CACTATGAGATGATGATGTT+TGG 0.510125 7_1:-79584608 Msa1041900:CDS
TATCATATTCAATTATCTCA+TGG 0.512431 7_1:-79584768 Msa1041900:CDS
CCTCAGTACTCATCAAGAAT+GGG 0.515932 7_1:+79582714 None:intergenic
TTGTGATGTTAATGATCAAA+GGG 0.516121 7_1:-79582807 Msa1041900:CDS
TGGAAATAATAAGAAGAGAA+AGG 0.518093 7_1:-79582924 Msa1041900:CDS
ATCACAGTGTTTGTTAATGT+GGG 0.521709 7_1:+79583369 None:intergenic
TGTTTATATAATGTTAACAA+TGG 0.527902 7_1:-79582848 Msa1041900:CDS
TTGATGCTTCAACTGGAAGA+TGG 0.530593 7_1:-79584412 Msa1041900:CDS
CCATTCTTGATGAGTACTGA+GGG 0.532198 7_1:-79582713 Msa1041900:CDS
GGGTGTTAAGAGAAGAAGAG+TGG 0.532295 7_1:-79583102 Msa1041900:CDS
AAGAGCTTGGATTGAAGCTA+GGG 0.532871 7_1:-79583026 Msa1041900:CDS
TACTGAGGGAGGAAATATGT+GGG 0.537099 7_1:-79582699 Msa1041900:CDS
TCTAAATTACCACTAAATGA+AGG 0.538013 7_1:+79584461 None:intergenic
GTTGATGTGGGTTGCCGGCG+GGG 0.539548 7_1:+79584633 None:intergenic
ATTGTGATGTTAATGATCAA+AGG 0.541913 7_1:-79582808 Msa1041900:CDS
AAGAGCTAACTGAAGAAATG+AGG 0.545636 7_1:-79582575 Msa1041900:three_prime_UTR
TGGTGGAGAAGCAAGAAGAA+TGG 0.548730 7_1:-79583168 Msa1041900:CDS
TCTCATAGTGTTGTTGATGT+GGG 0.555577 7_1:+79584621 None:intergenic
CTCCGCCGTAGGGAAATTGT+TGG 0.561007 7_1:+79584661 None:intergenic
GTTAACAATGGAGATGGAGC+TGG 0.562473 7_1:-79582836 Msa1041900:CDS
TTGTTGATGTGGGTTGCCGG+CGG 0.563154 7_1:+79584631 None:intergenic
AGTGTAAGAGTCTCTTGTCT+AGG 0.565795 7_1:+79584389 None:intergenic
ATGATAACAACAATGTTGAT+CGG 0.565825 7_1:-79582874 Msa1041900:CDS
TTCACAGCTGAAGAAATTGG+TGG 0.567445 7_1:-79583185 Msa1041900:CDS
GGGAGAGTACAAACAAATGA+TGG 0.567681 7_1:-79582776 Msa1041900:CDS
ACAGTAACAGCAGCAACAGC+AGG 0.567957 7_1:+79584527 None:intergenic
GCACTAGTGGTGGTGTTGGT+AGG 0.568004 7_1:+79584491 None:intergenic
GAAAAGCAGGAAGACAAGAT+GGG 0.570202 7_1:-79583510 Msa1041900:CDS
GCGGGGAATAGCTCCGCCGT+AGG 0.579850 7_1:+79584650 None:intergenic
TATTCCATCAAGTGTTGTTG+GGG 0.581444 7_1:-79582366 Msa1041900:three_prime_UTR
AGTGGTGGTGTTGGTAGGAG+TGG 0.582934 7_1:+79584496 None:intergenic
CAAAGAGAATGAGTTCTCCA+TGG 0.584262 7_1:-79583272 Msa1041900:CDS
ATGATCAAAGGGAAGAACTT+GGG 0.587215 7_1:-79582796 Msa1041900:CDS
GGAGAAACTCACAAAGACAT+TGG 0.587360 7_1:-79583143 Msa1041900:CDS
CGGGGAATAGCTCCGCCGTA+GGG 0.588808 7_1:+79584651 None:intergenic
AACATGGCTATCAAAGGAGT+GGG 0.590438 7_1:-79583591 Msa1041900:CDS
TGAAGCACTAGTGGTGGTGT+TGG 0.592317 7_1:+79584487 None:intergenic
CCCATTCTTGATGAGTACTG+AGG 0.594659 7_1:-79582714 Msa1041900:CDS
CTCAAATATTAAGACCAACA+AGG 0.598102 7_1:+79584975 None:intergenic
GTGAAGAACATGGCTATCAA+AGG 0.598664 7_1:-79583597 Msa1041900:CDS
AGGATAATGTGTGAAGAACA+TGG 0.603245 7_1:-79583607 Msa1041900:CDS
CGAATTCAGTGGAGTTTGTG+AGG 0.604333 7_1:+79583338 None:intergenic
GAACATGGCTATCAAAGGAG+TGG 0.606340 7_1:-79583592 Msa1041900:CDS
AGAGCTAACTGAAGAAATGA+GGG 0.609109 7_1:-79582574 Msa1041900:three_prime_UTR
AAGATGTTAAGCGGCAGAGT+CGG 0.611463 7_1:+79584931 None:intergenic
TGATGATCATAGTACTCATG+AGG 0.611714 7_1:-79583299 Msa1041900:CDS
TCAAATATTAAGACCAACAA+GGG 0.614018 7_1:+79584976 None:intergenic
GATGATCATAGTACTCATGA+GGG 0.620992 7_1:-79583298 Msa1041900:CDS
TGAAGATTGAAGATGTTAAG+CGG 0.622485 7_1:+79584922 None:intergenic
TGAAGGAGTTGAAGCACTAG+TGG 0.623923 7_1:+79584478 None:intergenic
CGATGATGTGTCGAATTCAG+TGG 0.625749 7_1:+79583327 None:intergenic
AACTACCAACAATTTCCCTA+CGG 0.632466 7_1:-79584666 Msa1041900:CDS
TACAACTTGAAGGTTAACAA+AGG 0.634719 7_1:-79582671 Msa1041900:CDS
TGTTAAGAGAAGAAGAGTGG+AGG 0.635425 7_1:-79583099 Msa1041900:CDS
TAGTGGAAGAAGCTTCTGGA+AGG 0.636390 7_1:-79583230 Msa1041900:CDS
CTAGAAAGTTGATCCCAAAG+AGG 0.637397 7_1:+79584311 None:intergenic
ACGGCGGAGCTATTCCCCGC+CGG 0.640713 7_1:-79584647 Msa1041900:CDS
GTACTGAGGGAGGAAATATG+TGG 0.650852 7_1:-79582700 Msa1041900:CDS
TACCAACAATTTCCCTACGG+CGG 0.660564 7_1:-79584663 Msa1041900:CDS
TTCTTGATGAGTACTGAGGG+AGG 0.678329 7_1:-79582710 Msa1041900:CDS
ATGATCATAGTACTCATGAG+GGG 0.712141 7_1:-79583297 Msa1041900:CDS
AGGAGTTGAAGCACTAGTGG+TGG 0.716487 7_1:+79584481 None:intergenic
ACAAAATCATGAAGACAACG+AGG 0.773702 7_1:+79584563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATAAGATAAGAAAA+AGG + chr7_1:79582376-79582395 None:intergenic 10.0%
!!! TTTATATTTTTTTGACAAAA+TGG + chr7_1:79584762-79584781 None:intergenic 10.0%
!! TTGTCAAAAAAATATAAATA+TGG - chr7_1:79584764-79584783 Msa1041900:CDS 10.0%
!! TAAATAAGGAGATAATAAAA+GGG + chr7_1:79583215-79583234 None:intergenic 15.0%
!! TTAAATAAGGAGATAATAAA+AGG + chr7_1:79583216-79583235 None:intergenic 15.0%
!!! TTTTCATCTTTTTTTTTGTA+AGG - chr7_1:79583259-79583278 Msa1041900:CDS 15.0%
!! TGTTTATATAATGTTAACAA+TGG - chr7_1:79584362-79584381 Msa1041900:CDS 15.0%
!! TGATGATATTATTACTTATT+AGG - chr7_1:79584677-79584696 Msa1041900:CDS 15.0%
!! TATTACTTATTAGGTAATTA+AGG - chr7_1:79584686-79584705 Msa1041900:CDS 15.0%
!!! ATCAATATTTTTATCAATCT+CGG - chr7_1:79584715-79584734 Msa1041900:CDS 15.0%
!! TATCATATTCAATTATCTCA+TGG - chr7_1:79582442-79582461 Msa1041900:three_prime_UTR 20.0%
!! AAACATACCAAATAATTTGA+AGG + chr7_1:79582960-79582979 None:intergenic 20.0%
!!! AGTTGAGTGTATTTTAAATA+AGG + chr7_1:79583229-79583248 None:intergenic 20.0%
!!! TTTAAAATACACTCAACTTT+CGG - chr7_1:79583231-79583250 Msa1041900:CDS 20.0%
!!! TTTTGTAAGGAAATTTATTG+AGG - chr7_1:79583272-79583291 Msa1041900:CDS 20.0%
!! TTTGTAAGGAAATTTATTGA+GGG - chr7_1:79583273-79583292 Msa1041900:CDS 20.0%
!! TTTAAATTGTCAATAGGAAT+GGG + chr7_1:79583382-79583401 None:intergenic 20.0%
!! ATTTAAATTGTCAATAGGAA+TGG + chr7_1:79583383-79583402 None:intergenic 20.0%
!!! ATGTCATTTAAATTGTCAAT+AGG + chr7_1:79583388-79583407 None:intergenic 20.0%
!! AAAACAACAAAAGCTTAATT+GGG + chr7_1:79583545-79583564 None:intergenic 20.0%
!! AAAAACAACAAAAGCTTAAT+TGG + chr7_1:79583546-79583565 None:intergenic 20.0%
!!! ACAACTTTTTTTTTCTTCTA+AGG - chr7_1:79584589-79584608 Msa1041900:CDS 20.0%
!!! ACAAAAAGTTAGTTTAATGA+TGG - chr7_1:79584814-79584833 Msa1041900:CDS 20.0%
!!! CAAAAAGTTAGTTTAATGAT+GGG - chr7_1:79584815-79584834 Msa1041900:CDS 20.0%
!! AATGATATGTAATTCATGTA+TGG - chr7_1:79584969-79584988 Msa1041900:five_prime_UTR 20.0%
! TCAAATATTAAGACCAACAA+GGG + chr7_1:79582237-79582256 None:intergenic 25.0%
! ATACTATTGAAAGTTGAGAT+AGG + chr7_1:79582425-79582444 None:intergenic 25.0%
! ATTCAATTATCTCATGGAAA+TGG - chr7_1:79582448-79582467 Msa1041900:three_prime_UTR 25.0%
!!! TACTATCATAGTGTTGATTA+TGG + chr7_1:79582478-79582497 None:intergenic 25.0%
! TCTAAATTACCACTAAATGA+AGG + chr7_1:79582752-79582771 None:intergenic 25.0%
!! TCCTTTTCCTTCAAATTATT+TGG - chr7_1:79582950-79582969 Msa1041900:CDS 25.0%
! ACCAAATAATTTGAAGGAAA+AGG + chr7_1:79582954-79582973 None:intergenic 25.0%
! TTTGTGTTAACAAAAATGAG+TGG - chr7_1:79582977-79582996 Msa1041900:CDS 25.0%
! AAGAACCTTAACAAAAAGTA+GGG + chr7_1:79583069-79583088 None:intergenic 25.0%
! AAAGAACCTTAACAAAAAGT+AGG + chr7_1:79583070-79583089 None:intergenic 25.0%
!! TTTTGTTAAGGTTCTTTTAC+TGG - chr7_1:79583073-79583092 Msa1041900:CDS 25.0%
! AAAAAAGGTAGTACTAATCT+TGG + chr7_1:79583150-79583169 None:intergenic 25.0%
! ACAATTTCAAAAGGGAAAAA+AGG + chr7_1:79583165-79583184 None:intergenic 25.0%
! AAAACTTTGCACTTAAAAGA+GGG + chr7_1:79583191-79583210 None:intergenic 25.0%
! AAAAACTTTGCACTTAAAAG+AGG + chr7_1:79583192-79583211 None:intergenic 25.0%
! TTGTAAGGAAATTTATTGAG+GGG - chr7_1:79583274-79583293 Msa1041900:CDS 25.0%
! CTAATTCTATCTATCTTACA+TGG - chr7_1:79583319-79583338 Msa1041900:CDS 25.0%
! AATTAATATTGAACCCTAGT+TGG + chr7_1:79583519-79583538 None:intergenic 25.0%
! AAACAACAAAAGCTTAATTG+GGG + chr7_1:79583544-79583563 None:intergenic 25.0%
! ATTATTGCTTTCTCCATATA+AGG + chr7_1:79583757-79583776 None:intergenic 25.0%
!!! TGGTACAAAAATTGTTTTGT+GGG + chr7_1:79583797-79583816 None:intergenic 25.0%
!!! TTGGTACAAAAATTGTTTTG+TGG + chr7_1:79583798-79583817 None:intergenic 25.0%
!!! TGGAAAAAGAGCATAAATTT+TGG - chr7_1:79584153-79584172 Msa1041900:intron 25.0%
!!! GGAAAAAGAGCATAAATTTT+GGG - chr7_1:79584154-79584173 Msa1041900:intron 25.0%
! TGGAAATAATAAGAAGAGAA+AGG - chr7_1:79584286-79584305 Msa1041900:intron 25.0%
! ATGATAACAACAATGTTGAT+CGG - chr7_1:79584336-79584355 Msa1041900:CDS 25.0%
! TATAATGTTAACAATGGAGA+TGG - chr7_1:79584368-79584387 Msa1041900:CDS 25.0%
! TTGATCATTAACATCACAAT+AGG + chr7_1:79584402-79584421 None:intergenic 25.0%
! ATTGTGATGTTAATGATCAA+AGG - chr7_1:79584402-79584421 Msa1041900:CDS 25.0%
! TTGTGATGTTAATGATCAAA+GGG - chr7_1:79584403-79584422 Msa1041900:CDS 25.0%
! GCAAAGCATAAATGATAATT+AGG + chr7_1:79584902-79584921 None:intergenic 25.0%
! TATCATTTATGCTTTGCAAA+TGG - chr7_1:79584905-79584924 Msa1041900:five_prime_UTR 25.0%
CTCAAATATTAAGACCAACA+AGG + chr7_1:79582238-79582257 None:intergenic 30.0%
TGAAGATTGAAGATGTTAAG+CGG + chr7_1:79582291-79582310 None:intergenic 30.0%
!! AAATTGTTGGTAGTTGATCT+TGG + chr7_1:79582539-79582558 None:intergenic 30.0%
AATTTAGAAGCTGAAACTAC+TGG - chr7_1:79582764-79582783 Msa1041900:CDS 30.0%
TTCAAAGAAGCTACTCAAAA+AGG - chr7_1:79582875-79582894 Msa1041900:CDS 30.0%
!!! TTTGTCCCTACTTTTTGTTA+AGG - chr7_1:79583061-79583080 Msa1041900:CDS 30.0%
! AAATTTATTGAGGGGTACAA+GGG - chr7_1:79583282-79583301 Msa1041900:CDS 30.0%
AATATTCATAGCTCCAACTA+GGG - chr7_1:79583503-79583522 Msa1041900:CDS 30.0%
! CATTGCTTGTATTGATGTTA+AGG - chr7_1:79583583-79583602 Msa1041900:CDS 30.0%
CAAATACTACAAAAAGACCA+AGG - chr7_1:79583674-79583693 Msa1041900:intron 30.0%
! TTTTTGTACCAACAACAATC+AGG - chr7_1:79583806-79583825 Msa1041900:intron 30.0%
AAACATTTCCTGATTGTTGT+TGG + chr7_1:79583817-79583836 None:intergenic 30.0%
! ATCACAGTGTTTGTTAATGT+GGG + chr7_1:79583844-79583863 None:intergenic 30.0%
! TATCACAGTGTTTGTTAATG+TGG + chr7_1:79583845-79583864 None:intergenic 30.0%
GAAGCTTTGCAAAAATTAAC+AGG - chr7_1:79584221-79584240 Msa1041900:intron 30.0%
TACAACTTGAAGGTTAACAA+AGG - chr7_1:79584539-79584558 Msa1041900:CDS 30.0%
ATCTCGGAGAGAAAAAAATA+TGG - chr7_1:79584731-79584750 Msa1041900:CDS 30.0%
! TGTCTTCAATTTTTCTGTTG+AGG + chr7_1:79584795-79584814 None:intergenic 30.0%
! TATATTCCATCAAGTGTTGT+TGG - chr7_1:79584842-79584861 Msa1041900:five_prime_UTR 30.0%
! ATATTCCATCAAGTGTTGTT+GGG - chr7_1:79584843-79584862 Msa1041900:five_prime_UTR 30.0%
ATTAAGACCAACAAGGGTAA+TGG + chr7_1:79582231-79582250 None:intergenic 35.0%
AACTACCAACAATTTCCCTA+CGG - chr7_1:79582544-79582563 Msa1041900:three_prime_UTR 35.0%
! TCTCATAGTGTTGTTGATGT+GGG + chr7_1:79582592-79582611 None:intergenic 35.0%
! ATCTCATAGTGTTGTTGATG+TGG + chr7_1:79582593-79582612 None:intergenic 35.0%
! CACTATGAGATGATGATGTT+TGG - chr7_1:79582602-79582621 Msa1041900:three_prime_UTR 35.0%
ACAAAATCATGAAGACAACG+AGG + chr7_1:79582650-79582669 None:intergenic 35.0%
TGAGTAGCTTCTTTGAATTG+AGG + chr7_1:79582872-79582891 None:intergenic 35.0%
TACTCAAAAAGGTCCTCTTT+GGG - chr7_1:79582886-79582905 Msa1041900:CDS 35.0%
TACTGGAAATGACTATACAC+TGG - chr7_1:79583090-79583109 Msa1041900:CDS 35.0%
! GAGGGTACACAATTTCAAAA+GGG + chr7_1:79583173-79583192 None:intergenic 35.0%
! AGAGGGTACACAATTTCAAA+AGG + chr7_1:79583174-79583193 None:intergenic 35.0%
! GAAATTTATTGAGGGGTACA+AGG - chr7_1:79583281-79583300 Msa1041900:CDS 35.0%
!! CAATAGGAATGGGTTTTTGA+AGG + chr7_1:79583372-79583391 None:intergenic 35.0%
CTAGTTGGAGCTATGAATAT+TGG + chr7_1:79583504-79583523 None:intergenic 35.0%
CAATATTCATAGCTCCAACT+AGG - chr7_1:79583502-79583521 Msa1041900:CDS 35.0%
AGGATAATGTGTGAAGAACA+TGG - chr7_1:79583603-79583622 Msa1041900:CDS 35.0%
TACTACAAAAAGACCAAGGA+AGG - chr7_1:79583678-79583697 Msa1041900:intron 35.0%
TGATGATCATAGTACTCATG+AGG - chr7_1:79583911-79583930 Msa1041900:intron 35.0%
GATGATCATAGTACTCATGA+GGG - chr7_1:79583912-79583931 Msa1041900:intron 35.0%
ATGATCATAGTACTCATGAG+GGG - chr7_1:79583913-79583932 Msa1041900:intron 35.0%
!!! CCTCTTTTTTCTCTTATCCA+TGG + chr7_1:79583958-79583977 None:intergenic 35.0%
CCATGGATAAGAGAAAAAAG+AGG - chr7_1:79583955-79583974 Msa1041900:intron 35.0%
AAGAGAAAAAAGAGGAGTAG+TGG - chr7_1:79583963-79583982 Msa1041900:intron 35.0%
TGATTCACAGCTGAAGAAAT+TGG - chr7_1:79584022-79584041 Msa1041900:intron 35.0%
CACAAAGACATTGGAACAAA+AGG - chr7_1:79584076-79584095 Msa1041900:intron 35.0%
TGGAACAAAAGGAAAAAGAG+AGG - chr7_1:79584087-79584106 Msa1041900:intron 35.0%
GGAACAAAAGGAAAAAGAGA+GGG - chr7_1:79584088-79584107 Msa1041900:intron 35.0%
GAAACAAGAGAAAGAAAGGT+TGG - chr7_1:79584133-79584152 Msa1041900:intron 35.0%
ACTCAATCTTCTTCTCATGA+TGG - chr7_1:79584266-79584285 Msa1041900:intron 35.0%
AATGATCAAAGGGAAGAACT+TGG - chr7_1:79584413-79584432 Msa1041900:CDS 35.0%
ATGATCAAAGGGAAGAACTT+GGG - chr7_1:79584414-79584433 Msa1041900:CDS 35.0%
!!! AAACTTCAACTCACTGGTTT+TGG + chr7_1:79584568-79584587 None:intergenic 35.0%
AAGAGCTAACTGAAGAAATG+AGG - chr7_1:79584635-79584654 Msa1041900:CDS 35.0%
AGAGCTAACTGAAGAAATGA+GGG - chr7_1:79584636-79584655 Msa1041900:CDS 35.0%
! TATTCCATCAAGTGTTGTTG+GGG - chr7_1:79584844-79584863 Msa1041900:five_prime_UTR 35.0%
TTATGCTTTGCAAATGGATC+TGG - chr7_1:79584911-79584930 Msa1041900:five_prime_UTR 35.0%
! TGAGTCTTTTCATTGACGAC+AGG - chr7_1:79582254-79582273 Msa1041900:three_prime_UTR 40.0%
GCTTCAACTCCTTCATTTAG+TGG - chr7_1:79582740-79582759 Msa1041900:CDS 40.0%
!! GCTGAAACTACTGGTTTCAT+TGG - chr7_1:79582773-79582792 Msa1041900:CDS 40.0%
!! ATTGGTGTTGATGCTTCAAC+TGG - chr7_1:79582791-79582810 Msa1041900:CDS 40.0%
TTGATGCTTCAACTGGAAGA+TGG - chr7_1:79582798-79582817 Msa1041900:CDS 40.0%
AGTGTAAGAGTCTCTTGTCT+AGG + chr7_1:79582824-79582843 None:intergenic 40.0%
CTACTCAAAAAGGTCCTCTT+TGG - chr7_1:79582885-79582904 Msa1041900:CDS 40.0%
! CTAGAAAGTTGATCCCAAAG+AGG + chr7_1:79582902-79582921 None:intergenic 40.0%
!! CTCTTTGGGATCAACTTTCT+AGG - chr7_1:79582900-79582919 Msa1041900:CDS 40.0%
TTGGGATCAACTTTCTAGGT+AGG - chr7_1:79582904-79582923 Msa1041900:CDS 40.0%
AGGAAGAGTCTGTGATTGAT+TGG + chr7_1:79583352-79583371 None:intergenic 40.0%
GTGAAGAACATGGCTATCAA+AGG - chr7_1:79583613-79583632 Msa1041900:intron 40.0%
AACATGGCTATCAAAGGAGT+GGG - chr7_1:79583619-79583638 Msa1041900:intron 40.0%
AAAGGAGTGGGAAAAAATGC+AGG - chr7_1:79583631-79583650 Msa1041900:intron 40.0%
AAGGAGTGGGAAAAAATGCA+GGG - chr7_1:79583632-79583651 Msa1041900:intron 40.0%
GAAAAGCAGGAAGACAAGAT+GGG - chr7_1:79583700-79583719 Msa1041900:intron 40.0%
! CGTCAACTTGAAGCCTTATA+TGG - chr7_1:79583741-79583760 Msa1041900:intron 40.0%
CAAAGAGAATGAGTTCTCCA+TGG - chr7_1:79583938-79583957 Msa1041900:intron 40.0%
TTCACAGCTGAAGAAATTGG+TGG - chr7_1:79584025-79584044 Msa1041900:intron 40.0%
GGAGAAACTCACAAAGACAT+TGG - chr7_1:79584067-79584086 Msa1041900:intron 40.0%
TGTTAAGAGAAGAAGAGTGG+AGG - chr7_1:79584111-79584130 Msa1041900:intron 40.0%
GGAGGAAACAAGAGAAAGAA+AGG - chr7_1:79584129-79584148 Msa1041900:intron 40.0%
TTTGGGCTAAAGAAAGAGCT+TGG - chr7_1:79584171-79584190 Msa1041900:intron 40.0%
AAAGAGCTTGGATTGAAGCT+AGG - chr7_1:79584183-79584202 Msa1041900:intron 40.0%
AAGAGCTTGGATTGAAGCTA+GGG - chr7_1:79584184-79584203 Msa1041900:intron 40.0%
! GGGAGAGTACAAACAAATGA+TGG - chr7_1:79584434-79584453 Msa1041900:CDS 40.0%
CCTCAGTACTCATCAAGAAT+GGG + chr7_1:79584499-79584518 None:intergenic 40.0%
!! CCATTCTTGATGAGTACTGA+GGG - chr7_1:79584497-79584516 Msa1041900:CDS 40.0%
TACTGAGGGAGGAAATATGT+GGG - chr7_1:79584511-79584530 Msa1041900:CDS 40.0%
GTGGGAGAATTACAACTTGA+AGG - chr7_1:79584529-79584548 Msa1041900:CDS 40.0%
GTTGTGAAACTTCAACTCAC+TGG + chr7_1:79584574-79584593 None:intergenic 40.0%
TTGGGGTATGACACTAATTC+AGG - chr7_1:79584861-79584880 Msa1041900:five_prime_UTR 40.0%
AAGATGTTAAGCGGCAGAGT+CGG + chr7_1:79582282-79582301 None:intergenic 45.0%
TACCAACAATTTCCCTACGG+CGG - chr7_1:79582547-79582566 Msa1041900:three_prime_UTR 45.0%
! TGAAGGAGTTGAAGCACTAG+TGG + chr7_1:79582735-79582754 None:intergenic 45.0%
!! GTACGTAGCATGTGCTACTT+TGG - chr7_1:79583473-79583492 Msa1041900:CDS 45.0%
GAACATGGCTATCAAAGGAG+TGG - chr7_1:79583618-79583637 Msa1041900:intron 45.0%
AAGACCAAGGAAGGAAAAGC+AGG - chr7_1:79583687-79583706 Msa1041900:intron 45.0%
!! TCTTCCTGCTTTTCCTTCCT+TGG + chr7_1:79583694-79583713 None:intergenic 45.0%
GGAAAAGCAGGAAGACAAGA+TGG - chr7_1:79583699-79583718 Msa1041900:intron 45.0%
TGTGGGAGTGAAGATGAAGA+AGG + chr7_1:79583780-79583799 None:intergenic 45.0%
CGAATTCAGTGGAGTTTGTG+AGG + chr7_1:79583875-79583894 None:intergenic 45.0%
CGATGATGTGTCGAATTCAG+TGG + chr7_1:79583886-79583905 None:intergenic 45.0%
TAGTGGAAGAAGCTTCTGGA+AGG - chr7_1:79583980-79583999 Msa1041900:intron 45.0%
TGGTGGAGAAGCAAGAAGAA+TGG - chr7_1:79584042-79584061 Msa1041900:intron 45.0%
GGAGAAGCAAGAAGAATGGT+TGG - chr7_1:79584046-79584065 Msa1041900:intron 45.0%
GGGTGTTAAGAGAAGAAGAG+TGG - chr7_1:79584108-79584127 Msa1041900:intron 45.0%
!! AGCTAGGGATGCTGCTTTAA+TGG - chr7_1:79584199-79584218 Msa1041900:intron 45.0%
GTTAACAATGGAGATGGAGC+TGG - chr7_1:79584374-79584393 Msa1041900:CDS 45.0%
! CCCATTCTTGATGAGTACTG+AGG - chr7_1:79584496-79584515 Msa1041900:CDS 45.0%
CCCTCAGTACTCATCAAGAA+TGG + chr7_1:79584500-79584519 None:intergenic 45.0%
!! TTCTTGATGAGTACTGAGGG+AGG - chr7_1:79584500-79584519 Msa1041900:CDS 45.0%
GTACTGAGGGAGGAAATATG+TGG - chr7_1:79584510-79584529 Msa1041900:CDS 45.0%
CATACCCCAACAACACTTGA+TGG + chr7_1:79584851-79584870 None:intergenic 45.0%
! GTGTTGTTGATGTGGGTTGC+CGG + chr7_1:79582585-79582604 None:intergenic 50.0%
ACAGTAACAGCAGCAACAGC+AGG + chr7_1:79582686-79582705 None:intergenic 50.0%
! TGAAGCACTAGTGGTGGTGT+TGG + chr7_1:79582726-79582745 None:intergenic 50.0%
! AGGAGTTGAAGCACTAGTGG+TGG + chr7_1:79582732-79582751 None:intergenic 50.0%
! GGAGTAGTGGAAGAAGCTTC+TGG - chr7_1:79583976-79583995 Msa1041900:intron 50.0%
CTCCGCCGTAGGGAAATTGT+TGG + chr7_1:79582552-79582571 None:intergenic 55.0%
! TTGTTGATGTGGGTTGCCGG+CGG + chr7_1:79582582-79582601 None:intergenic 55.0%
!! AGTGGTGGTGTTGGTAGGAG+TGG + chr7_1:79582717-79582736 None:intergenic 55.0%
!! GCACTAGTGGTGGTGTTGGT+AGG + chr7_1:79582722-79582741 None:intergenic 55.0%
! TGTTGATGTGGGTTGCCGGC+GGG + chr7_1:79582581-79582600 None:intergenic 60.0%
CGGGGAATAGCTCCGCCGTA+GGG + chr7_1:79582562-79582581 None:intergenic 65.0%
! GTTGATGTGGGTTGCCGGCG+GGG + chr7_1:79582580-79582599 None:intergenic 65.0%
GCGGGGAATAGCTCCGCCGT+AGG + chr7_1:79582563-79582582 None:intergenic 70.0%
ACGGCGGAGCTATTCCCCGC+CGG - chr7_1:79582563-79582582 Msa1041900:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79582223 79585009 79582223 ID=Msa1041900;Name=Msa1041900
chr7_1 mRNA 79582223 79585009 79582223 ID=Msa1041900-mRNA-1;Parent=Msa1041900;Name=Msa1041900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=172|1|1|1|1|1|2|432|499
chr7_1 exon 79582223 79583627 79582223 ID=Msa1041900-mRNA-1:exon:21521;Parent=Msa1041900-mRNA-1
chr7_1 exon 79584311 79585009 79584311 ID=Msa1041900-mRNA-1:exon:21520;Parent=Msa1041900-mRNA-1
chr7_1 five_prime_UTR 79584838 79585009 79584838 ID=Msa1041900-mRNA-1:five_prime_utr;Parent=Msa1041900-mRNA-1
chr7_1 CDS 79584311 79584837 79584311 ID=Msa1041900-mRNA-1:cds;Parent=Msa1041900-mRNA-1
chr7_1 CDS 79582655 79583627 79582655 ID=Msa1041900-mRNA-1:cds;Parent=Msa1041900-mRNA-1
chr7_1 three_prime_UTR 79582223 79582654 79582223 ID=Msa1041900-mRNA-1:three_prime_utr;Parent=Msa1041900-mRNA-1
Gene Sequence

>Msa1041900

ATGCAATATCTCTTTCACTCTTCTATTCCTATCTCAACTTTCAATAGTATCATATTCAATTATCTCATGGAAATGGAAGACCATAATCAACACTATGATAGTAATAGTATCACTGATCTCAGACAACTCATTAATATTGTTCCAAGATCAACTACCAACAATTTCCCTACGGCGGAGCTATTCCCCGCCGGCAACCCACATCAACAACACTATGAGATGATGATGTTTGGTAGACAAGTAGCAGATATAATGCCTCGTTGTCTTCATGATTTTGTTTCAACAGATTCACCTGCTGTTGCTGCTGTTACTGTTGCTACTGCCACTCCTACCAACACCACCACTAGTGCTTCAACTCCTTCATTTAGTGGTAATTTAGAAGCTGAAACTACTGGTTTCATTGGTGTTGATGCTTCAACTGGAAGATGGCCTAGACAAGAGACTCTTACACTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAAGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGCTATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAGACCAAGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAGCAATAATCCTTCTTCATCTTCACTCCCACAAAACAATTTTTGTACCAACAACAATCAGGAAATGTTTCATTCCCACATTAACAAACACTGTGATAGTCTCAGCCTCACAAACTCCACTGAATTCGACACATCATCGTCAGATGATGATCATAGTACTCATGAGGGGATCAAAGAGAATGAGTTCTCCATGGATAAGAGAAAAAAGAGGAGTAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAGCTGAAGAAATTGGTGGAGAAGCAAGAAGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAAGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGAAAGAAAGGTTGGAAAAAGAGCATAAATTTTGGGCTAAAGAAAGAGCTTGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAAAAATTAACAGGTAATAATGATGAGATAATAAAGACTCAATCTTCTTCTCATGATGGAAATAATAAGAAGAGAAAGGAAAACACAAGAAGTTGTTTTTACTTTGATGATAACAACAATGTTGATCGGTCTTGTTTATATAATGTTAACAATGGAGATGGAGCTGGTTCCTATTGTGATGTTAATGATCAAAGGGAAGAACTTGGGAGAGTACAAACAAATGATGGTTCAAATTCTAATAATGTTGTTGCAGCTGAAAGTTGTTTCCCATTCTTGATGAGTACTGAGGGAGGAAATATGTGGGAGAATTACAACTTGAAGGTTAACAAAGGAAACCAAAACCAGTGA

Protein sequence

>Msa1041900

MQYLFHSSIPISTFNSIIFNYLMEMEDHNQHYDSNSITDLRQLINIVPRSTTNNFPTAELFPAGNPHQQHYEMMMFGRQVADIMPRCLHDFVSTDSPAVAAVTVATATPTNTTTSASTPSFSGNLEAETTGFIGVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGESNNPSSSSLPQNNFCTNNNQEMFHSHINKHCDSLSLTNSTEFDTSSSDDDHSTHEGIKENEFSMDKRKKRSSGRSFWKVKIKDFIDSQLKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALQKLTGNNDEIIKTQSSSHDGNNKKRKENTRSCFYFDDNNNVDRSCLYNVNNGDGAGSYCDVNDQREELGRVQTNDGSNSNNVVAAESCFPFLMSTEGGNMWENYNLKVNKGNQNQ*