Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080100 | XP_039684219.1 | 90.349 | 487 | 32 | 4 | 23 | 506 | 1 | 475 | 0.0 | 847 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080100 | sp|Q9LZS0|PTL_ARATH | 43.357 | 429 | 173 | 13 | 23 | 416 | 1 | 394 | 1.14e-80 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080100 | A0A396H5V1 | 90.349 | 487 | 32 | 4 | 23 | 506 | 1 | 475 | 0.0 | 847 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1080100 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1080100 | 0.828752 | 7.550058e-55 | -8.615850e-47 |
| Msa0072370 | Msa1080100 | 0.817529 | 3.145209e-52 | -8.615850e-47 |
| Msa0110970 | Msa1080100 | 0.835153 | 1.979881e-56 | -8.615850e-47 |
| Msa0157290 | Msa1080100 | 0.829063 | 6.346989e-55 | -8.615850e-47 |
| Msa0163980 | Msa1080100 | 0.805155 | 1.530340e-49 | -8.615850e-47 |
| Msa0197930 | Msa1080100 | 0.804724 | 1.883128e-49 | -8.615850e-47 |
| Msa0392420 | Msa1080100 | 0.801997 | 6.913676e-49 | -8.615850e-47 |
| Msa0392460 | Msa1080100 | 0.801483 | 8.815478e-49 | -8.615850e-47 |
| Msa0392490 | Msa1080100 | 0.805697 | 1.178136e-49 | -8.615850e-47 |
| Msa0410650 | Msa1080100 | 0.802073 | 6.669556e-49 | -8.615850e-47 |
| Msa1041900 | Msa1080100 | 0.912759 | 1.347799e-83 | -8.615850e-47 |
| Msa1047980 | Msa1080100 | 0.808051 | 3.743878e-50 | -8.615850e-47 |
| Msa1080100 | Msa1080240 | 0.982308 | 9.305296e-155 | -8.615850e-47 |
| Msa1080100 | Msa1125000 | 0.887683 | 1.150310e-72 | -8.615850e-47 |
| Msa1080100 | Msa1127950 | 0.817140 | 3.847220e-52 | -8.615850e-47 |
| Msa1080100 | Msa1167280 | 0.939186 | 1.939004e-99 | -8.615850e-47 |
| Msa1080100 | Msa1172450 | 0.809174 | 2.155899e-50 | -8.615850e-47 |
| Msa1080100 | Msa1227950 | 0.803117 | 4.062060e-49 | -8.615850e-47 |
| Msa1080100 | Msa1227970 | 0.803805 | 2.924987e-49 | -8.615850e-47 |
| Msa1080100 | Msa1351760 | 0.829480 | 5.029091e-55 | -8.615850e-47 |
| Msa1080100 | Msa1374550 | 0.828028 | 1.128986e-54 | -8.615850e-47 |
| Msa1080100 | Msa1430240 | 0.806891 | 6.598252e-50 | -8.615850e-47 |
| Msa0239570 | Msa1080100 | 0.812104 | 5.014310e-51 | -8.615850e-47 |
| Msa0300690 | Msa1080100 | 0.802893 | 4.520581e-49 | -8.615850e-47 |
| Msa0317280 | Msa1080100 | 0.827551 | 1.469855e-54 | -8.615850e-47 |
| Msa0487570 | Msa1080100 | 0.805608 | 1.229556e-49 | -8.615850e-47 |
| Msa0487630 | Msa1080100 | 0.818242 | 2.171402e-52 | -8.615850e-47 |
| Msa0527550 | Msa1080100 | 0.815608 | 8.471262e-52 | -8.615850e-47 |
| Msa0574890 | Msa1080100 | 0.816234 | 6.142363e-52 | -8.615850e-47 |
| Msa0880140 | Msa1080100 | 0.830458 | 2.903577e-55 | -8.615850e-47 |
| Msa0930780 | Msa1080100 | 0.813674 | 2.271316e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080100 | MtrunA17_Chr7g0265831 | 90.349 | 487 | 32 | 4 | 23 | 506 | 1 | 475 | 0.0 | 847 |
| Msa1080100 | MtrunA17_Chr1g0179191 | 50.094 | 531 | 154 | 18 | 39 | 505 | 27 | 510 | 7.38e-141 | 415 |
| Msa1080100 | MtrunA17_Chr1g0198171 | 36.425 | 442 | 214 | 17 | 39 | 442 | 10 | 422 | 5.20e-70 | 232 |
| Msa1080100 | MtrunA17_Chr1g0201941 | 34.091 | 308 | 141 | 4 | 141 | 394 | 57 | 356 | 7.70e-38 | 147 |
| Msa1080100 | MtrunA17_Chr1g0201911 | 33.813 | 278 | 144 | 5 | 141 | 396 | 55 | 314 | 1.08e-29 | 122 |
| Msa1080100 | MtrunA17_Chr1g0201911 | 35.821 | 134 | 67 | 4 | 130 | 262 | 361 | 476 | 3.78e-14 | 75.1 |
| Msa1080100 | MtrunA17_Chr6g0463941 | 54.955 | 111 | 37 | 4 | 134 | 242 | 46 | 145 | 3.98e-24 | 106 |
| Msa1080100 | MtrunA17_Chr6g0463941 | 36.538 | 104 | 57 | 2 | 137 | 239 | 460 | 555 | 1.06e-11 | 67.4 |
| Msa1080100 | MtrunA17_Chr1g0190851 | 25.281 | 356 | 202 | 12 | 48 | 395 | 29 | 328 | 2.02e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080100 | AT5G03680.1 | 43.357 | 429 | 173 | 13 | 23 | 416 | 1 | 394 | 1.16e-81 | 265 |
| Msa1080100 | AT3G10000.1 | 37.605 | 476 | 231 | 12 | 69 | 506 | 34 | 481 | 5.62e-79 | 255 |
| Msa1080100 | AT3G10000.2 | 35.924 | 476 | 229 | 13 | 69 | 506 | 34 | 471 | 2.86e-70 | 232 |
| Msa1080100 | AT1G76890.2 | 32.704 | 318 | 145 | 8 | 134 | 395 | 34 | 338 | 4.76e-32 | 130 |
| Msa1080100 | AT1G76890.2 | 34.899 | 149 | 77 | 4 | 134 | 281 | 390 | 519 | 1.62e-13 | 73.6 |
| Msa1080100 | AT1G33240.1 | 53.271 | 107 | 37 | 3 | 141 | 246 | 62 | 156 | 6.10e-22 | 100 |
| Msa1080100 | AT1G33240.1 | 38.542 | 96 | 50 | 3 | 141 | 235 | 435 | 522 | 1.55e-11 | 67.4 |
| Msa1080100 | AT1G33240.3 | 53.271 | 107 | 37 | 3 | 141 | 246 | 62 | 156 | 6.50e-22 | 99.8 |
| Msa1080100 | AT1G33240.3 | 38.542 | 96 | 50 | 3 | 141 | 235 | 435 | 522 | 2.35e-11 | 66.6 |
| Msa1080100 | AT1G76880.1 | 48.305 | 118 | 48 | 3 | 121 | 238 | 46 | 150 | 4.23e-21 | 97.1 |
| Msa1080100 | AT1G76880.1 | 36.449 | 107 | 59 | 3 | 134 | 239 | 401 | 499 | 7.28e-11 | 65.1 |
| Msa1080100 | AT1G33240.2 | 64.407 | 59 | 18 | 1 | 188 | 246 | 62 | 117 | 2.56e-15 | 79.3 |
| Msa1080100 | AT1G33240.2 | 38.542 | 96 | 50 | 3 | 141 | 235 | 396 | 483 | 2.56e-11 | 66.6 |
Find 102 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTAGGGATGCTGCTTTAA+TGG | 0.226192 | 7_2:+79384725 | Msa1080100:CDS |
| ATTATTGCTTTCTCCATATA+AGG | 0.243458 | 7_2:-79384280 | None:intergenic |
| CGTCAACTTGAAGCCTTATA+TGG | 0.244935 | 7_2:+79384267 | Msa1080100:CDS |
| AAACTTCAACTCACTGGTTT+TGG | 0.276459 | 7_2:-79385091 | None:intergenic |
| CTTCCATTTCCATGAGATAA+TGG | 0.307022 | 7_2:-79382966 | None:intergenic |
| TACTATCATAGTGTTGATTA+TGG | 0.322614 | 7_2:-79382990 | None:intergenic |
| TGATTCACAGCTGAAGAAAT+TGG | 0.325251 | 7_2:+79384548 | Msa1080100:CDS |
| CATTGCTTGTATTGATGTTA+AGG | 0.328953 | 7_2:+79384109 | Msa1080100:CDS |
| CTCTTTGGGATCAACTTTCT+AGG | 0.339621 | 7_2:+79383414 | Msa1080100:CDS |
| GCTTCAACTCCTTCATTTAG+TGG | 0.343719 | 7_2:+79383255 | Msa1080100:CDS |
| GGAGTAGTGGAAGAAGCTTC+TGG | 0.362256 | 7_2:+79384502 | Msa1080100:CDS |
| ATTCAAGAAGCTACTCAAAA+AGG | 0.363306 | 7_2:+79383389 | Msa1080100:CDS |
| TTGATCATTAACATCACAAT+AGG | 0.364480 | 7_2:-79384925 | None:intergenic |
| AAATTGTTGGTAGTTGATCT+TGG | 0.391857 | 7_2:-79383051 | None:intergenic |
| CACAAAGACATTGGAACAAA+AGG | 0.401812 | 7_2:+79384602 | Msa1080100:CDS |
| GTGTTGTTGATGTGGGTTGC+CGG | 0.402706 | 7_2:-79383097 | None:intergenic |
| ATTCCATTATCTCATGGAAA+TGG | 0.406779 | 7_2:+79382963 | Msa1080100:CDS |
| ATACTATTGAAATTTGAGAT+AGG | 0.414627 | 7_2:-79382937 | None:intergenic |
| TGTTGATGTGGGTTGCCGGC+GGG | 0.415527 | 7_2:-79383093 | None:intergenic |
| TTGAGTAGCTTCTTGAATTG+AGG | 0.427377 | 7_2:-79383384 | None:intergenic |
| GAAACAAGAGAAAGAAAGGT+TGG | 0.430312 | 7_2:+79384659 | Msa1080100:CDS |
| CCCTCAGTACTCATCAAGAA+TGG | 0.434497 | 7_2:-79385023 | None:intergenic |
| TGTGGGAGTGAAGATGAAGA+AGG | 0.446001 | 7_2:-79384303 | None:intergenic |
| GGAGGAAACAAGAGAAAGAA+AGG | 0.446373 | 7_2:+79384655 | Msa1080100:CDS |
| ATTGGCGTTGATGCTTCAAC+TGG | 0.446616 | 7_2:+79383306 | Msa1080100:CDS |
| GCTGAAACTACTGGTTTCAT+TGG | 0.450069 | 7_2:+79383288 | Msa1080100:CDS |
| TTTGGGCTAAAGAAAGAGCT+TGG | 0.456386 | 7_2:+79384697 | Msa1080100:CDS |
| ATGGGGACCATTACCCTTGT+TGG | 0.461250 | 7_2:+79382742 | None:intergenic |
| AAACATTTCCTGATTGTTGT+TGG | 0.473343 | 7_2:-79384340 | None:intergenic |
| GGAGAAGCAAGAAGAATGGT+TGG | 0.477059 | 7_2:+79384572 | Msa1080100:CDS |
| AAAGAGCTTGGATTGAAGCT+AGG | 0.477669 | 7_2:+79384709 | Msa1080100:CDS |
| TATCACAGTGTTTGTTAATG+TGG | 0.481655 | 7_2:-79384368 | None:intergenic |
| GGAAAAGCAGGAAGACAAGA+TGG | 0.483853 | 7_2:+79384225 | Msa1080100:CDS |
| GTGGGAGAATTACAACTTGA+AGG | 0.483975 | 7_2:+79385055 | Msa1080100:CDS |
| ATTAAGACCAACAAGGGTAA+TGG | 0.488890 | 7_2:-79382749 | None:intergenic |
| AAGACCAAGGAAGGAAAAGC+AGG | 0.489921 | 7_2:+79384213 | Msa1080100:CDS |
| ATTGCATATATTATAAGATA+AGG | 0.492375 | 7_2:-79382894 | None:intergenic |
| ATCTCATAGTGTTGTTGATG+TGG | 0.498646 | 7_2:-79383105 | None:intergenic |
| TATAATGTTAACAATGGAGA+TGG | 0.503073 | 7_2:+79384894 | Msa1080100:CDS |
| AATGATCAAAGGGAAGAACT+TGG | 0.504968 | 7_2:+79384939 | Msa1080100:CDS |
| ACTCAATCTTCTTCTCATGA+TGG | 0.508615 | 7_2:+79384792 | Msa1080100:CDS |
| AATTTAGAAGCTGAAACTAC+TGG | 0.509455 | 7_2:+79383279 | Msa1080100:CDS |
| CACTATGAGATGATGATGTT+TGG | 0.510125 | 7_2:+79383117 | Msa1080100:CDS |
| TATCATATTCCATTATCTCA+TGG | 0.512431 | 7_2:+79382957 | Msa1080100:CDS |
| CCTCAGTACTCATCAAGAAT+GGG | 0.515932 | 7_2:-79385022 | None:intergenic |
| TTGTGATGTTAATGATCAAA+GGG | 0.516121 | 7_2:+79384929 | Msa1080100:CDS |
| TGGAAATAATAAGAAGAGAA+AGG | 0.518093 | 7_2:+79384812 | Msa1080100:CDS |
| TTGATGCTTCAACTGGAAGA+TGG | 0.518598 | 7_2:+79383313 | Msa1080100:CDS |
| ATCACAGTGTTTGTTAATGT+GGG | 0.521709 | 7_2:-79384367 | None:intergenic |
| TATATTATAAGATAAGGAAA+AGG | 0.521721 | 7_2:-79382888 | None:intergenic |
| TGTTTATATAATGTTAACAA+TGG | 0.527902 | 7_2:+79384888 | Msa1080100:CDS |
| CCATTCTTGATGAGTACTGA+GGG | 0.532198 | 7_2:+79385023 | Msa1080100:CDS |
| GGGTGTTAAGAGAAGAAGAG+TGG | 0.532295 | 7_2:+79384634 | Msa1080100:CDS |
| AAGAGCTTGGATTGAAGCTA+GGG | 0.532871 | 7_2:+79384710 | Msa1080100:CDS |
| TACTGAGGGAGGAAATATGT+GGG | 0.537099 | 7_2:+79385037 | Msa1080100:CDS |
| TCTAAATTACCACTAAATGA+AGG | 0.538013 | 7_2:-79383264 | None:intergenic |
| GTTGATGTGGGTTGCCGGCG+GGG | 0.539548 | 7_2:-79383092 | None:intergenic |
| ATTGTGATGTTAATGATCAA+AGG | 0.541913 | 7_2:+79384928 | Msa1080100:CDS |
| TGGTGGAGAAGCAAGAAGAA+TGG | 0.548730 | 7_2:+79384568 | Msa1080100:CDS |
| TCTCATAGTGTTGTTGATGT+GGG | 0.555577 | 7_2:-79383104 | None:intergenic |
| CTCCGCCGTAGGGAAATTGT+TGG | 0.561007 | 7_2:-79383064 | None:intergenic |
| GTTAACAATGGAGATGGAGC+TGG | 0.562473 | 7_2:+79384900 | Msa1080100:CDS |
| TTGTTGATGTGGGTTGCCGG+CGG | 0.563154 | 7_2:-79383094 | None:intergenic |
| AGTGTAAGAGTCTCTTGTCT+AGG | 0.565795 | 7_2:-79383336 | None:intergenic |
| ATGATAACAACAATGTTGAT+CGG | 0.565825 | 7_2:+79384862 | Msa1080100:CDS |
| TTCACAGCTGAAGAAATTGG+TGG | 0.567445 | 7_2:+79384551 | Msa1080100:CDS |
| GGGAGAGTACAAACAAATGA+TGG | 0.567681 | 7_2:+79384960 | Msa1080100:CDS |
| ACAGTAACAGCAGCAACAGC+AGG | 0.567957 | 7_2:-79383198 | None:intergenic |
| GCACTAGTGGTGGTGTTGGT+AGG | 0.568004 | 7_2:-79383234 | None:intergenic |
| GAAAAGCAGGAAGACAAGAT+GGG | 0.570202 | 7_2:+79384226 | Msa1080100:CDS |
| GCGGGGAATAGCTCCGCCGT+AGG | 0.579850 | 7_2:-79383075 | None:intergenic |
| AGTGGTGGTGTTGGTAGGAG+TGG | 0.582934 | 7_2:-79383229 | None:intergenic |
| CAAAGAGAATGAGTTCTCCA+TGG | 0.584262 | 7_2:+79384464 | Msa1080100:CDS |
| ATGATCAAAGGGAAGAACTT+GGG | 0.587215 | 7_2:+79384940 | Msa1080100:CDS |
| GGAGAAACTCACAAAGACAT+TGG | 0.587360 | 7_2:+79384593 | Msa1080100:CDS |
| CGGGGAATAGCTCCGCCGTA+GGG | 0.588808 | 7_2:-79383074 | None:intergenic |
| AACATGGCTATCAAAGGAGT+GGG | 0.590438 | 7_2:+79384145 | Msa1080100:CDS |
| TGAAGCACTAGTGGTGGTGT+TGG | 0.592317 | 7_2:-79383238 | None:intergenic |
| CCCATTCTTGATGAGTACTG+AGG | 0.594659 | 7_2:+79385022 | Msa1080100:CDS |
| CTCAAATATTAAGACCAACA+AGG | 0.598102 | 7_2:-79382756 | None:intergenic |
| GTGAAGAACATGGCTATCAA+AGG | 0.598664 | 7_2:+79384139 | Msa1080100:CDS |
| AGGATAATGTGTGAAGAACA+TGG | 0.603245 | 7_2:+79384129 | Msa1080100:CDS |
| CGAATTCAGTGGAGTTTGTG+AGG | 0.604333 | 7_2:-79384398 | None:intergenic |
| GAACATGGCTATCAAAGGAG+TGG | 0.606340 | 7_2:+79384144 | Msa1080100:CDS |
| AAGATGTTAAGCGGCAGAGT+CGG | 0.611463 | 7_2:-79382800 | None:intergenic |
| TGATGATCATAGTACTCATG+AGG | 0.611714 | 7_2:+79384437 | Msa1080100:CDS |
| TCAAATATTAAGACCAACAA+GGG | 0.614018 | 7_2:-79382755 | None:intergenic |
| GATGATCATAGTACTCATGA+GGG | 0.620992 | 7_2:+79384438 | Msa1080100:CDS |
| TGAAGATTGAAGATGTTAAG+CGG | 0.622485 | 7_2:-79382809 | None:intergenic |
| TGAAGGAGTTGAAGCACTAG+TGG | 0.623923 | 7_2:-79383247 | None:intergenic |
| CGATGATGTGTCGAATTCAG+TGG | 0.625749 | 7_2:-79384409 | None:intergenic |
| AACTACCAACAATTTCCCTA+CGG | 0.632466 | 7_2:+79383059 | Msa1080100:CDS |
| TGTTAAGAGAAGAAGAGTGG+AGG | 0.635425 | 7_2:+79384637 | Msa1080100:CDS |
| TAGTGGAAGAAGCTTCTGGA+AGG | 0.636390 | 7_2:+79384506 | Msa1080100:CDS |
| CTAGAAAGTTGATCCCAAAG+AGG | 0.637397 | 7_2:-79383413 | None:intergenic |
| ACGGCGGAGCTATTCCCCGC+CGG | 0.640713 | 7_2:+79383078 | Msa1080100:CDS |
| GTACTGAGGGAGGAAATATG+TGG | 0.650852 | 7_2:+79385036 | Msa1080100:CDS |
| TACCAACAATTTCCCTACGG+CGG | 0.660564 | 7_2:+79383062 | Msa1080100:CDS |
| TTCTTGATGAGTACTGAGGG+AGG | 0.678329 | 7_2:+79385026 | Msa1080100:CDS |
| ATGATCATAGTACTCATGAG+GGG | 0.712141 | 7_2:+79384439 | Msa1080100:CDS |
| AGGAGTTGAAGCACTAGTGG+TGG | 0.716487 | 7_2:-79383244 | None:intergenic |
| ACAAAATCATGAAGACAACG+AGG | 0.773702 | 7_2:-79383162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAGAGATAATAAAA+GGG | - | chr7_2:79383740-79383759 | None:intergenic | 10.0% |
| !! | TTAAATAAAGAGATAATAAA+AGG | - | chr7_2:79383741-79383760 | None:intergenic | 10.0% |
| !! | TAAATAAAGAGATAATAAAA+GGG | - | chr7_2:79383740-79383759 | None:intergenic | 10.0% |
| !! | TTAAATAAAGAGATAATAAA+AGG | - | chr7_2:79383741-79383760 | None:intergenic | 10.0% |
| !! | TATATTATAAGATAAGGAAA+AGG | - | chr7_2:79382891-79382910 | None:intergenic | 15.0% |
| !! | ATTGCATATATTATAAGATA+AGG | - | chr7_2:79382897-79382916 | None:intergenic | 15.0% |
| !! | TGTTTATATAATGTTAACAA+TGG | + | chr7_2:79384888-79384907 | Msa1080100:CDS | 15.0% |
| !! | TATATTATAAGATAAGGAAA+AGG | - | chr7_2:79382891-79382910 | None:intergenic | 15.0% |
| !! | ATTGCATATATTATAAGATA+AGG | - | chr7_2:79382897-79382916 | None:intergenic | 15.0% |
| !! | TGTTTATATAATGTTAACAA+TGG | + | chr7_2:79384888-79384907 | Msa1080100:CDS | 15.0% |
| !!! | ATACTATTGAAATTTGAGAT+AGG | - | chr7_2:79382940-79382959 | None:intergenic | 20.0% |
| !! | AAACATACCAAATAATTTGA+AGG | - | chr7_2:79383474-79383493 | None:intergenic | 20.0% |
| !!! | TTTTTGTGGAATTTTTGTTA+AGG | + | chr7_2:79383587-79383606 | Msa1080100:intron | 20.0% |
| !!! | TTTAAAATACACTCAACTTT+CGG | + | chr7_2:79383756-79383775 | Msa1080100:intron | 20.0% |
| !!! | ATGTCATTTAAATTGTCAAT+AGG | - | chr7_2:79383912-79383931 | None:intergenic | 20.0% |
| !! | AAAACAACAAAAGCTTAATT+GGG | - | chr7_2:79384071-79384090 | None:intergenic | 20.0% |
| !! | AAAAACAACAAAAGCTTAAT+TGG | - | chr7_2:79384072-79384091 | None:intergenic | 20.0% |
| !!! | ATACTATTGAAATTTGAGAT+AGG | - | chr7_2:79382940-79382959 | None:intergenic | 20.0% |
| !! | AAACATACCAAATAATTTGA+AGG | - | chr7_2:79383474-79383493 | None:intergenic | 20.0% |
| !!! | TTTTTGTGGAATTTTTGTTA+AGG | + | chr7_2:79383587-79383606 | Msa1080100:intron | 20.0% |
| !!! | TTTAAAATACACTCAACTTT+CGG | + | chr7_2:79383756-79383775 | Msa1080100:intron | 20.0% |
| !!! | ATGTCATTTAAATTGTCAAT+AGG | - | chr7_2:79383912-79383931 | None:intergenic | 20.0% |
| !! | AAAACAACAAAAGCTTAATT+GGG | - | chr7_2:79384071-79384090 | None:intergenic | 20.0% |
| !! | AAAAACAACAAAAGCTTAAT+TGG | - | chr7_2:79384072-79384091 | None:intergenic | 20.0% |
| ! | TCAAATATTAAGACCAACAA+GGG | - | chr7_2:79382758-79382777 | None:intergenic | 25.0% |
| ! | TATCATATTCCATTATCTCA+TGG | + | chr7_2:79382957-79382976 | Msa1080100:CDS | 25.0% |
| !!! | TACTATCATAGTGTTGATTA+TGG | - | chr7_2:79382993-79383012 | None:intergenic | 25.0% |
| ! | TCTAAATTACCACTAAATGA+AGG | - | chr7_2:79383267-79383286 | None:intergenic | 25.0% |
| !! | TCCTTTTCCTTCAAATTATT+TGG | + | chr7_2:79383464-79383483 | Msa1080100:intron | 25.0% |
| ! | ACCAAATAATTTGAAGGAAA+AGG | - | chr7_2:79383468-79383487 | None:intergenic | 25.0% |
| ! | TTTGTGTTAACAAAAATGAG+TGG | + | chr7_2:79383491-79383510 | Msa1080100:intron | 25.0% |
| ! | TAATTATTTATGCTTGCACT+TGG | + | chr7_2:79383541-79383560 | Msa1080100:intron | 25.0% |
| ! | CAAAAATTCCACAAAAAGTA+GGG | - | chr7_2:79383584-79383603 | None:intergenic | 25.0% |
| ! | ACAAAAATTCCACAAAAAGT+AGG | - | chr7_2:79383585-79383604 | None:intergenic | 25.0% |
| !! | TTTTGTTAAGGTTCTTTTAC+TGG | + | chr7_2:79383599-79383618 | Msa1080100:intron | 25.0% |
| ! | AATTAATATTGAACCCTAGT+TGG | - | chr7_2:79384044-79384063 | None:intergenic | 25.0% |
| ! | AAACAACAAAAGCTTAATTG+GGG | - | chr7_2:79384070-79384089 | None:intergenic | 25.0% |
| ! | ATTATTGCTTTCTCCATATA+AGG | - | chr7_2:79384283-79384302 | None:intergenic | 25.0% |
| !!! | TGGTACAAAAATTGTTTTGT+GGG | - | chr7_2:79384323-79384342 | None:intergenic | 25.0% |
| !!! | TTGGTACAAAAATTGTTTTG+TGG | - | chr7_2:79384324-79384343 | None:intergenic | 25.0% |
| !!! | TGGAAAAAGAGCATAAATTT+TGG | + | chr7_2:79384679-79384698 | Msa1080100:CDS | 25.0% |
| !!! | GGAAAAAGAGCATAAATTTT+GGG | + | chr7_2:79384680-79384699 | Msa1080100:CDS | 25.0% |
| ! | TGGAAATAATAAGAAGAGAA+AGG | + | chr7_2:79384812-79384831 | Msa1080100:CDS | 25.0% |
| ! | ATGATAACAACAATGTTGAT+CGG | + | chr7_2:79384862-79384881 | Msa1080100:CDS | 25.0% |
| ! | TATAATGTTAACAATGGAGA+TGG | + | chr7_2:79384894-79384913 | Msa1080100:CDS | 25.0% |
| ! | TTGATCATTAACATCACAAT+AGG | - | chr7_2:79384928-79384947 | None:intergenic | 25.0% |
| ! | ATTGTGATGTTAATGATCAA+AGG | + | chr7_2:79384928-79384947 | Msa1080100:CDS | 25.0% |
| ! | TTGTGATGTTAATGATCAAA+GGG | + | chr7_2:79384929-79384948 | Msa1080100:CDS | 25.0% |
| ! | TCAAATATTAAGACCAACAA+GGG | - | chr7_2:79382758-79382777 | None:intergenic | 25.0% |
| ! | TATCATATTCCATTATCTCA+TGG | + | chr7_2:79382957-79382976 | Msa1080100:CDS | 25.0% |
| !!! | TACTATCATAGTGTTGATTA+TGG | - | chr7_2:79382993-79383012 | None:intergenic | 25.0% |
| ! | TCTAAATTACCACTAAATGA+AGG | - | chr7_2:79383267-79383286 | None:intergenic | 25.0% |
| !! | TCCTTTTCCTTCAAATTATT+TGG | + | chr7_2:79383464-79383483 | Msa1080100:intron | 25.0% |
| ! | ACCAAATAATTTGAAGGAAA+AGG | - | chr7_2:79383468-79383487 | None:intergenic | 25.0% |
| ! | TTTGTGTTAACAAAAATGAG+TGG | + | chr7_2:79383491-79383510 | Msa1080100:intron | 25.0% |
| ! | TAATTATTTATGCTTGCACT+TGG | + | chr7_2:79383541-79383560 | Msa1080100:intron | 25.0% |
| ! | CAAAAATTCCACAAAAAGTA+GGG | - | chr7_2:79383584-79383603 | None:intergenic | 25.0% |
| ! | ACAAAAATTCCACAAAAAGT+AGG | - | chr7_2:79383585-79383604 | None:intergenic | 25.0% |
| !! | TTTTGTTAAGGTTCTTTTAC+TGG | + | chr7_2:79383599-79383618 | Msa1080100:intron | 25.0% |
| ! | AATTAATATTGAACCCTAGT+TGG | - | chr7_2:79384044-79384063 | None:intergenic | 25.0% |
| ! | AAACAACAAAAGCTTAATTG+GGG | - | chr7_2:79384070-79384089 | None:intergenic | 25.0% |
| ! | ATTATTGCTTTCTCCATATA+AGG | - | chr7_2:79384283-79384302 | None:intergenic | 25.0% |
| !!! | TGGTACAAAAATTGTTTTGT+GGG | - | chr7_2:79384323-79384342 | None:intergenic | 25.0% |
| !!! | TTGGTACAAAAATTGTTTTG+TGG | - | chr7_2:79384324-79384343 | None:intergenic | 25.0% |
| !!! | TGGAAAAAGAGCATAAATTT+TGG | + | chr7_2:79384679-79384698 | Msa1080100:CDS | 25.0% |
| !!! | GGAAAAAGAGCATAAATTTT+GGG | + | chr7_2:79384680-79384699 | Msa1080100:CDS | 25.0% |
| ! | TGGAAATAATAAGAAGAGAA+AGG | + | chr7_2:79384812-79384831 | Msa1080100:CDS | 25.0% |
| ! | ATGATAACAACAATGTTGAT+CGG | + | chr7_2:79384862-79384881 | Msa1080100:CDS | 25.0% |
| ! | TATAATGTTAACAATGGAGA+TGG | + | chr7_2:79384894-79384913 | Msa1080100:CDS | 25.0% |
| ! | TTGATCATTAACATCACAAT+AGG | - | chr7_2:79384928-79384947 | None:intergenic | 25.0% |
| ! | ATTGTGATGTTAATGATCAA+AGG | + | chr7_2:79384928-79384947 | Msa1080100:CDS | 25.0% |
| ! | TTGTGATGTTAATGATCAAA+GGG | + | chr7_2:79384929-79384948 | Msa1080100:CDS | 25.0% |
| CTCAAATATTAAGACCAACA+AGG | - | chr7_2:79382759-79382778 | None:intergenic | 30.0% | |
| TGAAGATTGAAGATGTTAAG+CGG | - | chr7_2:79382812-79382831 | None:intergenic | 30.0% | |
| ATTCCATTATCTCATGGAAA+TGG | + | chr7_2:79382963-79382982 | Msa1080100:CDS | 30.0% | |
| !! | AAATTGTTGGTAGTTGATCT+TGG | - | chr7_2:79383054-79383073 | None:intergenic | 30.0% |
| AATTTAGAAGCTGAAACTAC+TGG | + | chr7_2:79383279-79383298 | Msa1080100:CDS | 30.0% | |
| ATTCAAGAAGCTACTCAAAA+AGG | + | chr7_2:79383389-79383408 | Msa1080100:CDS | 30.0% | |
| !!! | AATTTTGTCCCTACTTTTTG+TGG | + | chr7_2:79383573-79383592 | Msa1080100:intron | 30.0% |
| GAAAAAGGTAGTACTAATCT+TGG | - | chr7_2:79383676-79383695 | None:intergenic | 30.0% | |
| CACAATTTCAAAAGGGAAAA+AGG | - | chr7_2:79383691-79383710 | None:intergenic | 30.0% | |
| AACACTTTGCACTTAAAAGA+GGG | - | chr7_2:79383716-79383735 | None:intergenic | 30.0% | |
| AAACACTTTGCACTTAAAAG+AGG | - | chr7_2:79383717-79383736 | None:intergenic | 30.0% | |
| ! | TTTTGTGAGCAAATTCATTG+AGG | + | chr7_2:79383795-79383814 | Msa1080100:intron | 30.0% |
| TTTGTGAGCAAATTCATTGA+GGG | + | chr7_2:79383796-79383815 | Msa1080100:intron | 30.0% | |
| CTAATTCTATCTGTCTAACA+TGG | + | chr7_2:79383843-79383862 | Msa1080100:intron | 30.0% | |
| ! | CAATAGGAATGAGTTTTTGA+AGG | - | chr7_2:79383896-79383915 | None:intergenic | 30.0% |
| ACATATTACACGACAATACA+TGG | + | chr7_2:79383940-79383959 | Msa1080100:intron | 30.0% | |
| AATATTCATAGCTCCAACTA+GGG | + | chr7_2:79384028-79384047 | Msa1080100:intron | 30.0% | |
| AACAACAAAAGCTTAATTGG+GGG | - | chr7_2:79384069-79384088 | None:intergenic | 30.0% | |
| ! | CATTGCTTGTATTGATGTTA+AGG | + | chr7_2:79384109-79384128 | Msa1080100:CDS | 30.0% |
| CAAATACTACAAAAAGACCA+AGG | + | chr7_2:79384200-79384219 | Msa1080100:CDS | 30.0% | |
| ! | TTTTTGTACCAACAACAATC+AGG | + | chr7_2:79384332-79384351 | Msa1080100:CDS | 30.0% |
| AAACATTTCCTGATTGTTGT+TGG | - | chr7_2:79384343-79384362 | None:intergenic | 30.0% | |
| ! | ATCACAGTGTTTGTTAATGT+GGG | - | chr7_2:79384370-79384389 | None:intergenic | 30.0% |
| ! | TATCACAGTGTTTGTTAATG+TGG | - | chr7_2:79384371-79384390 | None:intergenic | 30.0% |
| GAAGCTTTGCAAAAATTAAC+AGG | + | chr7_2:79384747-79384766 | Msa1080100:CDS | 30.0% | |
| CTCAAATATTAAGACCAACA+AGG | - | chr7_2:79382759-79382778 | None:intergenic | 30.0% | |
| TGAAGATTGAAGATGTTAAG+CGG | - | chr7_2:79382812-79382831 | None:intergenic | 30.0% | |
| ATTCCATTATCTCATGGAAA+TGG | + | chr7_2:79382963-79382982 | Msa1080100:CDS | 30.0% | |
| !! | AAATTGTTGGTAGTTGATCT+TGG | - | chr7_2:79383054-79383073 | None:intergenic | 30.0% |
| AATTTAGAAGCTGAAACTAC+TGG | + | chr7_2:79383279-79383298 | Msa1080100:CDS | 30.0% | |
| ATTCAAGAAGCTACTCAAAA+AGG | + | chr7_2:79383389-79383408 | Msa1080100:CDS | 30.0% | |
| !!! | AATTTTGTCCCTACTTTTTG+TGG | + | chr7_2:79383573-79383592 | Msa1080100:intron | 30.0% |
| GAAAAAGGTAGTACTAATCT+TGG | - | chr7_2:79383676-79383695 | None:intergenic | 30.0% | |
| CACAATTTCAAAAGGGAAAA+AGG | - | chr7_2:79383691-79383710 | None:intergenic | 30.0% | |
| AACACTTTGCACTTAAAAGA+GGG | - | chr7_2:79383716-79383735 | None:intergenic | 30.0% | |
| AAACACTTTGCACTTAAAAG+AGG | - | chr7_2:79383717-79383736 | None:intergenic | 30.0% | |
| ! | TTTTGTGAGCAAATTCATTG+AGG | + | chr7_2:79383795-79383814 | Msa1080100:intron | 30.0% |
| TTTGTGAGCAAATTCATTGA+GGG | + | chr7_2:79383796-79383815 | Msa1080100:intron | 30.0% | |
| CTAATTCTATCTGTCTAACA+TGG | + | chr7_2:79383843-79383862 | Msa1080100:intron | 30.0% | |
| ! | CAATAGGAATGAGTTTTTGA+AGG | - | chr7_2:79383896-79383915 | None:intergenic | 30.0% |
| ACATATTACACGACAATACA+TGG | + | chr7_2:79383940-79383959 | Msa1080100:intron | 30.0% | |
| AATATTCATAGCTCCAACTA+GGG | + | chr7_2:79384028-79384047 | Msa1080100:intron | 30.0% | |
| AACAACAAAAGCTTAATTGG+GGG | - | chr7_2:79384069-79384088 | None:intergenic | 30.0% | |
| ! | CATTGCTTGTATTGATGTTA+AGG | + | chr7_2:79384109-79384128 | Msa1080100:CDS | 30.0% |
| CAAATACTACAAAAAGACCA+AGG | + | chr7_2:79384200-79384219 | Msa1080100:CDS | 30.0% | |
| ! | TTTTTGTACCAACAACAATC+AGG | + | chr7_2:79384332-79384351 | Msa1080100:CDS | 30.0% |
| AAACATTTCCTGATTGTTGT+TGG | - | chr7_2:79384343-79384362 | None:intergenic | 30.0% | |
| ! | ATCACAGTGTTTGTTAATGT+GGG | - | chr7_2:79384370-79384389 | None:intergenic | 30.0% |
| ! | TATCACAGTGTTTGTTAATG+TGG | - | chr7_2:79384371-79384390 | None:intergenic | 30.0% |
| GAAGCTTTGCAAAAATTAAC+AGG | + | chr7_2:79384747-79384766 | Msa1080100:CDS | 30.0% | |
| ATTAAGACCAACAAGGGTAA+TGG | - | chr7_2:79382752-79382771 | None:intergenic | 35.0% | |
| CTTCCATTTCCATGAGATAA+TGG | - | chr7_2:79382969-79382988 | None:intergenic | 35.0% | |
| AACTACCAACAATTTCCCTA+CGG | + | chr7_2:79383059-79383078 | Msa1080100:CDS | 35.0% | |
| ! | TCTCATAGTGTTGTTGATGT+GGG | - | chr7_2:79383107-79383126 | None:intergenic | 35.0% |
| ! | ATCTCATAGTGTTGTTGATG+TGG | - | chr7_2:79383108-79383127 | None:intergenic | 35.0% |
| ! | CACTATGAGATGATGATGTT+TGG | + | chr7_2:79383117-79383136 | Msa1080100:CDS | 35.0% |
| ACAAAATCATGAAGACAACG+AGG | - | chr7_2:79383165-79383184 | None:intergenic | 35.0% | |
| TTGAGTAGCTTCTTGAATTG+AGG | - | chr7_2:79383387-79383406 | None:intergenic | 35.0% | |
| TACTCAAAAAGGTCCTCTTT+GGG | + | chr7_2:79383400-79383419 | Msa1080100:CDS | 35.0% | |
| ! | GAGGGTACACAATTTCAAAA+GGG | - | chr7_2:79383698-79383717 | None:intergenic | 35.0% |
| ! | AGAGGGTACACAATTTCAAA+AGG | - | chr7_2:79383699-79383718 | None:intergenic | 35.0% |
| TTGTGAGCAAATTCATTGAG+GGG | + | chr7_2:79383797-79383816 | Msa1080100:intron | 35.0% | |
| CTAGTTGGAGCTATGAATAT+TGG | - | chr7_2:79384029-79384048 | None:intergenic | 35.0% | |
| CAATATTCATAGCTCCAACT+AGG | + | chr7_2:79384027-79384046 | Msa1080100:intron | 35.0% | |
| AGGATAATGTGTGAAGAACA+TGG | + | chr7_2:79384129-79384148 | Msa1080100:CDS | 35.0% | |
| TACTACAAAAAGACCAAGGA+AGG | + | chr7_2:79384204-79384223 | Msa1080100:CDS | 35.0% | |
| TGATGATCATAGTACTCATG+AGG | + | chr7_2:79384437-79384456 | Msa1080100:CDS | 35.0% | |
| GATGATCATAGTACTCATGA+GGG | + | chr7_2:79384438-79384457 | Msa1080100:CDS | 35.0% | |
| ATGATCATAGTACTCATGAG+GGG | + | chr7_2:79384439-79384458 | Msa1080100:CDS | 35.0% | |
| !!! | CCTCTTTTTTCTCTTATCCA+TGG | - | chr7_2:79384484-79384503 | None:intergenic | 35.0% |
| CCATGGATAAGAGAAAAAAG+AGG | + | chr7_2:79384481-79384500 | Msa1080100:CDS | 35.0% | |
| AAGAGAAAAAAGAGGAGTAG+TGG | + | chr7_2:79384489-79384508 | Msa1080100:CDS | 35.0% | |
| TGATTCACAGCTGAAGAAAT+TGG | + | chr7_2:79384548-79384567 | Msa1080100:CDS | 35.0% | |
| CACAAAGACATTGGAACAAA+AGG | + | chr7_2:79384602-79384621 | Msa1080100:CDS | 35.0% | |
| TGGAACAAAAGGAAAAAGAG+AGG | + | chr7_2:79384613-79384632 | Msa1080100:CDS | 35.0% | |
| GGAACAAAAGGAAAAAGAGA+GGG | + | chr7_2:79384614-79384633 | Msa1080100:CDS | 35.0% | |
| GAAACAAGAGAAAGAAAGGT+TGG | + | chr7_2:79384659-79384678 | Msa1080100:CDS | 35.0% | |
| ACTCAATCTTCTTCTCATGA+TGG | + | chr7_2:79384792-79384811 | Msa1080100:CDS | 35.0% | |
| AATGATCAAAGGGAAGAACT+TGG | + | chr7_2:79384939-79384958 | Msa1080100:CDS | 35.0% | |
| ATGATCAAAGGGAAGAACTT+GGG | + | chr7_2:79384940-79384959 | Msa1080100:CDS | 35.0% | |
| ATTAAGACCAACAAGGGTAA+TGG | - | chr7_2:79382752-79382771 | None:intergenic | 35.0% | |
| CTTCCATTTCCATGAGATAA+TGG | - | chr7_2:79382969-79382988 | None:intergenic | 35.0% | |
| AACTACCAACAATTTCCCTA+CGG | + | chr7_2:79383059-79383078 | Msa1080100:CDS | 35.0% | |
| ! | TCTCATAGTGTTGTTGATGT+GGG | - | chr7_2:79383107-79383126 | None:intergenic | 35.0% |
| ! | ATCTCATAGTGTTGTTGATG+TGG | - | chr7_2:79383108-79383127 | None:intergenic | 35.0% |
| ! | CACTATGAGATGATGATGTT+TGG | + | chr7_2:79383117-79383136 | Msa1080100:CDS | 35.0% |
| ACAAAATCATGAAGACAACG+AGG | - | chr7_2:79383165-79383184 | None:intergenic | 35.0% | |
| TTGAGTAGCTTCTTGAATTG+AGG | - | chr7_2:79383387-79383406 | None:intergenic | 35.0% | |
| TACTCAAAAAGGTCCTCTTT+GGG | + | chr7_2:79383400-79383419 | Msa1080100:CDS | 35.0% | |
| ! | GAGGGTACACAATTTCAAAA+GGG | - | chr7_2:79383698-79383717 | None:intergenic | 35.0% |
| ! | AGAGGGTACACAATTTCAAA+AGG | - | chr7_2:79383699-79383718 | None:intergenic | 35.0% |
| TTGTGAGCAAATTCATTGAG+GGG | + | chr7_2:79383797-79383816 | Msa1080100:intron | 35.0% | |
| CTAGTTGGAGCTATGAATAT+TGG | - | chr7_2:79384029-79384048 | None:intergenic | 35.0% | |
| CAATATTCATAGCTCCAACT+AGG | + | chr7_2:79384027-79384046 | Msa1080100:intron | 35.0% | |
| AGGATAATGTGTGAAGAACA+TGG | + | chr7_2:79384129-79384148 | Msa1080100:CDS | 35.0% | |
| TACTACAAAAAGACCAAGGA+AGG | + | chr7_2:79384204-79384223 | Msa1080100:CDS | 35.0% | |
| TGATGATCATAGTACTCATG+AGG | + | chr7_2:79384437-79384456 | Msa1080100:CDS | 35.0% | |
| GATGATCATAGTACTCATGA+GGG | + | chr7_2:79384438-79384457 | Msa1080100:CDS | 35.0% | |
| ATGATCATAGTACTCATGAG+GGG | + | chr7_2:79384439-79384458 | Msa1080100:CDS | 35.0% | |
| !!! | CCTCTTTTTTCTCTTATCCA+TGG | - | chr7_2:79384484-79384503 | None:intergenic | 35.0% |
| CCATGGATAAGAGAAAAAAG+AGG | + | chr7_2:79384481-79384500 | Msa1080100:CDS | 35.0% | |
| AAGAGAAAAAAGAGGAGTAG+TGG | + | chr7_2:79384489-79384508 | Msa1080100:CDS | 35.0% | |
| TGATTCACAGCTGAAGAAAT+TGG | + | chr7_2:79384548-79384567 | Msa1080100:CDS | 35.0% | |
| CACAAAGACATTGGAACAAA+AGG | + | chr7_2:79384602-79384621 | Msa1080100:CDS | 35.0% | |
| TGGAACAAAAGGAAAAAGAG+AGG | + | chr7_2:79384613-79384632 | Msa1080100:CDS | 35.0% | |
| GGAACAAAAGGAAAAAGAGA+GGG | + | chr7_2:79384614-79384633 | Msa1080100:CDS | 35.0% | |
| GAAACAAGAGAAAGAAAGGT+TGG | + | chr7_2:79384659-79384678 | Msa1080100:CDS | 35.0% | |
| ACTCAATCTTCTTCTCATGA+TGG | + | chr7_2:79384792-79384811 | Msa1080100:CDS | 35.0% | |
| AATGATCAAAGGGAAGAACT+TGG | + | chr7_2:79384939-79384958 | Msa1080100:CDS | 35.0% | |
| ATGATCAAAGGGAAGAACTT+GGG | + | chr7_2:79384940-79384959 | Msa1080100:CDS | 35.0% | |
| ! | TGAGTCTTTTCATTGACGAC+AGG | + | chr7_2:79382775-79382794 | Msa1080100:five_prime_UTR | 40.0% |
| GCTTCAACTCCTTCATTTAG+TGG | + | chr7_2:79383255-79383274 | Msa1080100:CDS | 40.0% | |
| !! | GCTGAAACTACTGGTTTCAT+TGG | + | chr7_2:79383288-79383307 | Msa1080100:CDS | 40.0% |
| TTGATGCTTCAACTGGAAGA+TGG | + | chr7_2:79383313-79383332 | Msa1080100:CDS | 40.0% | |
| AGTGTAAGAGTCTCTTGTCT+AGG | - | chr7_2:79383339-79383358 | None:intergenic | 40.0% | |
| CTACTCAAAAAGGTCCTCTT+TGG | + | chr7_2:79383399-79383418 | Msa1080100:CDS | 40.0% | |
| ! | CTAGAAAGTTGATCCCAAAG+AGG | - | chr7_2:79383416-79383435 | None:intergenic | 40.0% |
| !! | CTCTTTGGGATCAACTTTCT+AGG | + | chr7_2:79383414-79383433 | Msa1080100:CDS | 40.0% |
| TTGGGATCAACTTTCTAGGT+AGG | + | chr7_2:79383418-79383437 | Msa1080100:intron | 40.0% | |
| TGTGAGCAAATTCATTGAGG+GGG | + | chr7_2:79383798-79383817 | Msa1080100:intron | 40.0% | |
| ! | AAATTCATTGAGGGGGTACA+AGG | + | chr7_2:79383805-79383824 | Msa1080100:intron | 40.0% |
| ! | AATTCATTGAGGGGGTACAA+GGG | + | chr7_2:79383806-79383825 | Msa1080100:intron | 40.0% |
| AGGAAGAGTCTGTGATTGAT+TGG | - | chr7_2:79383876-79383895 | None:intergenic | 40.0% | |
| !! | GTACGTAGCATGTGTTACTT+TGG | + | chr7_2:79383998-79384017 | Msa1080100:intron | 40.0% |
| GTGAAGAACATGGCTATCAA+AGG | + | chr7_2:79384139-79384158 | Msa1080100:CDS | 40.0% | |
| AACATGGCTATCAAAGGAGT+GGG | + | chr7_2:79384145-79384164 | Msa1080100:CDS | 40.0% | |
| AAAGGAGTGGGAAAAAATGC+AGG | + | chr7_2:79384157-79384176 | Msa1080100:CDS | 40.0% | |
| AAGGAGTGGGAAAAAATGCA+GGG | + | chr7_2:79384158-79384177 | Msa1080100:CDS | 40.0% | |
| GAAAAGCAGGAAGACAAGAT+GGG | + | chr7_2:79384226-79384245 | Msa1080100:CDS | 40.0% | |
| ! | CGTCAACTTGAAGCCTTATA+TGG | + | chr7_2:79384267-79384286 | Msa1080100:CDS | 40.0% |
| CAAAGAGAATGAGTTCTCCA+TGG | + | chr7_2:79384464-79384483 | Msa1080100:CDS | 40.0% | |
| TTCACAGCTGAAGAAATTGG+TGG | + | chr7_2:79384551-79384570 | Msa1080100:CDS | 40.0% | |
| GGAGAAACTCACAAAGACAT+TGG | + | chr7_2:79384593-79384612 | Msa1080100:CDS | 40.0% | |
| TGTTAAGAGAAGAAGAGTGG+AGG | + | chr7_2:79384637-79384656 | Msa1080100:CDS | 40.0% | |
| GGAGGAAACAAGAGAAAGAA+AGG | + | chr7_2:79384655-79384674 | Msa1080100:CDS | 40.0% | |
| TTTGGGCTAAAGAAAGAGCT+TGG | + | chr7_2:79384697-79384716 | Msa1080100:CDS | 40.0% | |
| AAAGAGCTTGGATTGAAGCT+AGG | + | chr7_2:79384709-79384728 | Msa1080100:CDS | 40.0% | |
| AAGAGCTTGGATTGAAGCTA+GGG | + | chr7_2:79384710-79384729 | Msa1080100:CDS | 40.0% | |
| ! | GGGAGAGTACAAACAAATGA+TGG | + | chr7_2:79384960-79384979 | Msa1080100:CDS | 40.0% |
| CCTCAGTACTCATCAAGAAT+GGG | - | chr7_2:79385025-79385044 | None:intergenic | 40.0% | |
| !! | CCATTCTTGATGAGTACTGA+GGG | + | chr7_2:79385023-79385042 | Msa1080100:CDS | 40.0% |
| TACTGAGGGAGGAAATATGT+GGG | + | chr7_2:79385037-79385056 | Msa1080100:CDS | 40.0% | |
| GTGGGAGAATTACAACTTGA+AGG | + | chr7_2:79385055-79385074 | Msa1080100:CDS | 40.0% | |
| AAAGCAAACCAAAACCAGTG+AGG | + | chr7_2:79385083-79385102 | Msa1080100:CDS | 40.0% | |
| AAGCAAACCAAAACCAGTGA+GGG | + | chr7_2:79385084-79385103 | Msa1080100:CDS | 40.0% | |
| ! | TGAGTCTTTTCATTGACGAC+AGG | + | chr7_2:79382775-79382794 | Msa1080100:five_prime_UTR | 40.0% |
| GCTTCAACTCCTTCATTTAG+TGG | + | chr7_2:79383255-79383274 | Msa1080100:CDS | 40.0% | |
| !! | GCTGAAACTACTGGTTTCAT+TGG | + | chr7_2:79383288-79383307 | Msa1080100:CDS | 40.0% |
| TTGATGCTTCAACTGGAAGA+TGG | + | chr7_2:79383313-79383332 | Msa1080100:CDS | 40.0% | |
| AGTGTAAGAGTCTCTTGTCT+AGG | - | chr7_2:79383339-79383358 | None:intergenic | 40.0% | |
| CTACTCAAAAAGGTCCTCTT+TGG | + | chr7_2:79383399-79383418 | Msa1080100:CDS | 40.0% | |
| ! | CTAGAAAGTTGATCCCAAAG+AGG | - | chr7_2:79383416-79383435 | None:intergenic | 40.0% |
| !! | CTCTTTGGGATCAACTTTCT+AGG | + | chr7_2:79383414-79383433 | Msa1080100:CDS | 40.0% |
| TTGGGATCAACTTTCTAGGT+AGG | + | chr7_2:79383418-79383437 | Msa1080100:intron | 40.0% | |
| TGTGAGCAAATTCATTGAGG+GGG | + | chr7_2:79383798-79383817 | Msa1080100:intron | 40.0% | |
| ! | AAATTCATTGAGGGGGTACA+AGG | + | chr7_2:79383805-79383824 | Msa1080100:intron | 40.0% |
| ! | AATTCATTGAGGGGGTACAA+GGG | + | chr7_2:79383806-79383825 | Msa1080100:intron | 40.0% |
| AGGAAGAGTCTGTGATTGAT+TGG | - | chr7_2:79383876-79383895 | None:intergenic | 40.0% | |
| !! | GTACGTAGCATGTGTTACTT+TGG | + | chr7_2:79383998-79384017 | Msa1080100:intron | 40.0% |
| GTGAAGAACATGGCTATCAA+AGG | + | chr7_2:79384139-79384158 | Msa1080100:CDS | 40.0% | |
| AACATGGCTATCAAAGGAGT+GGG | + | chr7_2:79384145-79384164 | Msa1080100:CDS | 40.0% | |
| AAAGGAGTGGGAAAAAATGC+AGG | + | chr7_2:79384157-79384176 | Msa1080100:CDS | 40.0% | |
| AAGGAGTGGGAAAAAATGCA+GGG | + | chr7_2:79384158-79384177 | Msa1080100:CDS | 40.0% | |
| GAAAAGCAGGAAGACAAGAT+GGG | + | chr7_2:79384226-79384245 | Msa1080100:CDS | 40.0% | |
| ! | CGTCAACTTGAAGCCTTATA+TGG | + | chr7_2:79384267-79384286 | Msa1080100:CDS | 40.0% |
| CAAAGAGAATGAGTTCTCCA+TGG | + | chr7_2:79384464-79384483 | Msa1080100:CDS | 40.0% | |
| TTCACAGCTGAAGAAATTGG+TGG | + | chr7_2:79384551-79384570 | Msa1080100:CDS | 40.0% | |
| GGAGAAACTCACAAAGACAT+TGG | + | chr7_2:79384593-79384612 | Msa1080100:CDS | 40.0% | |
| TGTTAAGAGAAGAAGAGTGG+AGG | + | chr7_2:79384637-79384656 | Msa1080100:CDS | 40.0% | |
| GGAGGAAACAAGAGAAAGAA+AGG | + | chr7_2:79384655-79384674 | Msa1080100:CDS | 40.0% | |
| TTTGGGCTAAAGAAAGAGCT+TGG | + | chr7_2:79384697-79384716 | Msa1080100:CDS | 40.0% | |
| AAAGAGCTTGGATTGAAGCT+AGG | + | chr7_2:79384709-79384728 | Msa1080100:CDS | 40.0% | |
| AAGAGCTTGGATTGAAGCTA+GGG | + | chr7_2:79384710-79384729 | Msa1080100:CDS | 40.0% | |
| ! | GGGAGAGTACAAACAAATGA+TGG | + | chr7_2:79384960-79384979 | Msa1080100:CDS | 40.0% |
| CCTCAGTACTCATCAAGAAT+GGG | - | chr7_2:79385025-79385044 | None:intergenic | 40.0% | |
| !! | CCATTCTTGATGAGTACTGA+GGG | + | chr7_2:79385023-79385042 | Msa1080100:CDS | 40.0% |
| TACTGAGGGAGGAAATATGT+GGG | + | chr7_2:79385037-79385056 | Msa1080100:CDS | 40.0% | |
| GTGGGAGAATTACAACTTGA+AGG | + | chr7_2:79385055-79385074 | Msa1080100:CDS | 40.0% | |
| AAGATGTTAAGCGGCAGAGT+CGG | - | chr7_2:79382803-79382822 | None:intergenic | 45.0% | |
| TACCAACAATTTCCCTACGG+CGG | + | chr7_2:79383062-79383081 | Msa1080100:CDS | 45.0% | |
| ! | TGAAGGAGTTGAAGCACTAG+TGG | - | chr7_2:79383250-79383269 | None:intergenic | 45.0% |
| !! | ATTGGCGTTGATGCTTCAAC+TGG | + | chr7_2:79383306-79383325 | Msa1080100:CDS | 45.0% |
| GAACATGGCTATCAAAGGAG+TGG | + | chr7_2:79384144-79384163 | Msa1080100:CDS | 45.0% | |
| AAGACCAAGGAAGGAAAAGC+AGG | + | chr7_2:79384213-79384232 | Msa1080100:CDS | 45.0% | |
| !! | TCTTCCTGCTTTTCCTTCCT+TGG | - | chr7_2:79384220-79384239 | None:intergenic | 45.0% |
| GGAAAAGCAGGAAGACAAGA+TGG | + | chr7_2:79384225-79384244 | Msa1080100:CDS | 45.0% | |
| TGTGGGAGTGAAGATGAAGA+AGG | - | chr7_2:79384306-79384325 | None:intergenic | 45.0% | |
| CGAATTCAGTGGAGTTTGTG+AGG | - | chr7_2:79384401-79384420 | None:intergenic | 45.0% | |
| CGATGATGTGTCGAATTCAG+TGG | - | chr7_2:79384412-79384431 | None:intergenic | 45.0% | |
| TAGTGGAAGAAGCTTCTGGA+AGG | + | chr7_2:79384506-79384525 | Msa1080100:CDS | 45.0% | |
| TGGTGGAGAAGCAAGAAGAA+TGG | + | chr7_2:79384568-79384587 | Msa1080100:CDS | 45.0% | |
| GGAGAAGCAAGAAGAATGGT+TGG | + | chr7_2:79384572-79384591 | Msa1080100:CDS | 45.0% | |
| GGGTGTTAAGAGAAGAAGAG+TGG | + | chr7_2:79384634-79384653 | Msa1080100:CDS | 45.0% | |
| !! | AGCTAGGGATGCTGCTTTAA+TGG | + | chr7_2:79384725-79384744 | Msa1080100:CDS | 45.0% |
| GTTAACAATGGAGATGGAGC+TGG | + | chr7_2:79384900-79384919 | Msa1080100:CDS | 45.0% | |
| ! | CCCATTCTTGATGAGTACTG+AGG | + | chr7_2:79385022-79385041 | Msa1080100:CDS | 45.0% |
| CCCTCAGTACTCATCAAGAA+TGG | - | chr7_2:79385026-79385045 | None:intergenic | 45.0% | |
| !! | TTCTTGATGAGTACTGAGGG+AGG | + | chr7_2:79385026-79385045 | Msa1080100:CDS | 45.0% |
| GTACTGAGGGAGGAAATATG+TGG | + | chr7_2:79385036-79385055 | Msa1080100:CDS | 45.0% | |
| AAGATGTTAAGCGGCAGAGT+CGG | - | chr7_2:79382803-79382822 | None:intergenic | 45.0% | |
| TACCAACAATTTCCCTACGG+CGG | + | chr7_2:79383062-79383081 | Msa1080100:CDS | 45.0% | |
| ! | TGAAGGAGTTGAAGCACTAG+TGG | - | chr7_2:79383250-79383269 | None:intergenic | 45.0% |
| !! | ATTGGCGTTGATGCTTCAAC+TGG | + | chr7_2:79383306-79383325 | Msa1080100:CDS | 45.0% |
| GAACATGGCTATCAAAGGAG+TGG | + | chr7_2:79384144-79384163 | Msa1080100:CDS | 45.0% | |
| AAGACCAAGGAAGGAAAAGC+AGG | + | chr7_2:79384213-79384232 | Msa1080100:CDS | 45.0% | |
| !! | TCTTCCTGCTTTTCCTTCCT+TGG | - | chr7_2:79384220-79384239 | None:intergenic | 45.0% |
| GGAAAAGCAGGAAGACAAGA+TGG | + | chr7_2:79384225-79384244 | Msa1080100:CDS | 45.0% | |
| TGTGGGAGTGAAGATGAAGA+AGG | - | chr7_2:79384306-79384325 | None:intergenic | 45.0% | |
| CGAATTCAGTGGAGTTTGTG+AGG | - | chr7_2:79384401-79384420 | None:intergenic | 45.0% | |
| CGATGATGTGTCGAATTCAG+TGG | - | chr7_2:79384412-79384431 | None:intergenic | 45.0% | |
| TAGTGGAAGAAGCTTCTGGA+AGG | + | chr7_2:79384506-79384525 | Msa1080100:CDS | 45.0% | |
| TGGTGGAGAAGCAAGAAGAA+TGG | + | chr7_2:79384568-79384587 | Msa1080100:CDS | 45.0% | |
| GGAGAAGCAAGAAGAATGGT+TGG | + | chr7_2:79384572-79384591 | Msa1080100:CDS | 45.0% | |
| GGGTGTTAAGAGAAGAAGAG+TGG | + | chr7_2:79384634-79384653 | Msa1080100:CDS | 45.0% | |
| !! | AGCTAGGGATGCTGCTTTAA+TGG | + | chr7_2:79384725-79384744 | Msa1080100:CDS | 45.0% |
| GTTAACAATGGAGATGGAGC+TGG | + | chr7_2:79384900-79384919 | Msa1080100:CDS | 45.0% | |
| ! | CCCATTCTTGATGAGTACTG+AGG | + | chr7_2:79385022-79385041 | Msa1080100:CDS | 45.0% |
| CCCTCAGTACTCATCAAGAA+TGG | - | chr7_2:79385026-79385045 | None:intergenic | 45.0% | |
| !! | TTCTTGATGAGTACTGAGGG+AGG | + | chr7_2:79385026-79385045 | Msa1080100:CDS | 45.0% |
| GTACTGAGGGAGGAAATATG+TGG | + | chr7_2:79385036-79385055 | Msa1080100:CDS | 45.0% | |
| ! | GTGTTGTTGATGTGGGTTGC+CGG | - | chr7_2:79383100-79383119 | None:intergenic | 50.0% |
| ACAGTAACAGCAGCAACAGC+AGG | - | chr7_2:79383201-79383220 | None:intergenic | 50.0% | |
| ! | TGAAGCACTAGTGGTGGTGT+TGG | - | chr7_2:79383241-79383260 | None:intergenic | 50.0% |
| ! | AGGAGTTGAAGCACTAGTGG+TGG | - | chr7_2:79383247-79383266 | None:intergenic | 50.0% |
| ! | GGAGTAGTGGAAGAAGCTTC+TGG | + | chr7_2:79384502-79384521 | Msa1080100:CDS | 50.0% |
| ! | GTGTTGTTGATGTGGGTTGC+CGG | - | chr7_2:79383100-79383119 | None:intergenic | 50.0% |
| ACAGTAACAGCAGCAACAGC+AGG | - | chr7_2:79383201-79383220 | None:intergenic | 50.0% | |
| ! | TGAAGCACTAGTGGTGGTGT+TGG | - | chr7_2:79383241-79383260 | None:intergenic | 50.0% |
| ! | AGGAGTTGAAGCACTAGTGG+TGG | - | chr7_2:79383247-79383266 | None:intergenic | 50.0% |
| ! | GGAGTAGTGGAAGAAGCTTC+TGG | + | chr7_2:79384502-79384521 | Msa1080100:CDS | 50.0% |
| CTCCGCCGTAGGGAAATTGT+TGG | - | chr7_2:79383067-79383086 | None:intergenic | 55.0% | |
| ! | TTGTTGATGTGGGTTGCCGG+CGG | - | chr7_2:79383097-79383116 | None:intergenic | 55.0% |
| !! | AGTGGTGGTGTTGGTAGGAG+TGG | - | chr7_2:79383232-79383251 | None:intergenic | 55.0% |
| !! | GCACTAGTGGTGGTGTTGGT+AGG | - | chr7_2:79383237-79383256 | None:intergenic | 55.0% |
| CTCCGCCGTAGGGAAATTGT+TGG | - | chr7_2:79383067-79383086 | None:intergenic | 55.0% | |
| ! | TTGTTGATGTGGGTTGCCGG+CGG | - | chr7_2:79383097-79383116 | None:intergenic | 55.0% |
| !! | AGTGGTGGTGTTGGTAGGAG+TGG | - | chr7_2:79383232-79383251 | None:intergenic | 55.0% |
| !! | GCACTAGTGGTGGTGTTGGT+AGG | - | chr7_2:79383237-79383256 | None:intergenic | 55.0% |
| ! | TGTTGATGTGGGTTGCCGGC+GGG | - | chr7_2:79383096-79383115 | None:intergenic | 60.0% |
| ! | TGTTGATGTGGGTTGCCGGC+GGG | - | chr7_2:79383096-79383115 | None:intergenic | 60.0% |
| CGGGGAATAGCTCCGCCGTA+GGG | - | chr7_2:79383077-79383096 | None:intergenic | 65.0% | |
| ! | GTTGATGTGGGTTGCCGGCG+GGG | - | chr7_2:79383095-79383114 | None:intergenic | 65.0% |
| CGGGGAATAGCTCCGCCGTA+GGG | - | chr7_2:79383077-79383096 | None:intergenic | 65.0% | |
| ! | GTTGATGTGGGTTGCCGGCG+GGG | - | chr7_2:79383095-79383114 | None:intergenic | 65.0% |
| GCGGGGAATAGCTCCGCCGT+AGG | - | chr7_2:79383078-79383097 | None:intergenic | 70.0% | |
| ACGGCGGAGCTATTCCCCGC+CGG | + | chr7_2:79383078-79383097 | Msa1080100:CDS | 70.0% | |
| GCGGGGAATAGCTCCGCCGT+AGG | - | chr7_2:79383078-79383097 | None:intergenic | 70.0% | |
| ACGGCGGAGCTATTCCCCGC+CGG | + | chr7_2:79383078-79383097 | Msa1080100:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 79382744 | 79385103 | 79382744 | ID=Msa1080100;Name=Msa1080100 |
| chr7_2 | mRNA | 79382744 | 79385103 | 79382744 | ID=Msa1080100-mRNA-1;Parent=Msa1080100;Name=Msa1080100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=166|0|0.5|1|1|1|2|0|506 |
| chr7_2 | exon | 79382744 | 79383435 | 79382744 | ID=Msa1080100-mRNA-1:exon:19944;Parent=Msa1080100-mRNA-1 |
| chr7_2 | exon | 79384109 | 79385103 | 79384109 | ID=Msa1080100-mRNA-1:exon:19945;Parent=Msa1080100-mRNA-1 |
| chr7_2 | five_prime_UTR | 79382744 | 79382909 | 79382744 | ID=Msa1080100-mRNA-1:five_prime_utr;Parent=Msa1080100-mRNA-1 |
| chr7_2 | CDS | 79382910 | 79383435 | 79382910 | ID=Msa1080100-mRNA-1:cds;Parent=Msa1080100-mRNA-1 |
| chr7_2 | CDS | 79384109 | 79385103 | 79384109 | ID=Msa1080100-mRNA-1:cds;Parent=Msa1080100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
