AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1167280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167280 MtrunA17_Chr7g0265831 95.625 480 13 3 23 499 1 475 0.0 956
Msa1167280 MtrunA17_Chr1g0179191 52.290 524 146 17 39 498 27 510 2.99e-153 446
Msa1167280 MtrunA17_Chr1g0198171 38.161 435 209 16 39 435 10 422 1.81e-79 256
Msa1167280 MtrunA17_Chr1g0201941 37.209 301 134 4 141 387 57 356 9.08e-49 177
Msa1167280 MtrunA17_Chr1g0201941 43.000 100 54 3 132 230 446 543 5.77e-18 87.0
Msa1167280 MtrunA17_Chr1g0201911 35.556 270 143 4 141 389 55 314 4.27e-39 149
Msa1167280 MtrunA17_Chr1g0201911 41.732 127 62 4 130 255 361 476 3.43e-20 94.0
Msa1167280 MtrunA17_Chr6g0463941 64.423 104 31 3 134 235 46 145 2.25e-34 137
Msa1167280 MtrunA17_Chr6g0463941 44.330 97 52 2 137 232 460 555 3.93e-19 90.9
Msa1167280 MtrunA17_Chr1g0190851 26.648 349 199 12 48 388 29 328 6.70e-16 80.5
Msa1167280 MtrunA17_Chr1g0190851 37.634 93 54 3 141 230 418 509 1.86e-11 66.2
Msa1167280 MtrunA17_Chr7g0273941 33.588 131 65 4 110 230 361 479 2.56e-14 75.1
Msa1167280 MtrunA17_Chr2g0290511 32.812 128 82 3 104 228 223 349 1.99e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167280 AT5G03680.1 45.972 422 165 12 23 409 1 394 4.01e-94 298
Msa1167280 AT3G10000.1 39.872 469 223 11 69 499 34 481 8.11e-92 288
Msa1167280 AT3G10000.2 38.166 469 221 12 69 499 34 471 5.71e-82 262
Msa1167280 AT1G76890.2 34.727 311 141 7 134 388 34 338 3.91e-41 155
Msa1167280 AT1G76890.2 39.437 142 73 3 134 274 390 519 2.87e-20 94.4
Msa1167280 AT1G76880.1 55.856 111 43 2 121 231 46 150 1.37e-30 125
Msa1167280 AT1G76880.1 43.000 100 55 2 134 232 401 499 1.81e-17 85.9
Msa1167280 AT1G33240.3 60.606 99 35 2 141 239 62 156 4.77e-30 124
Msa1167280 AT1G33240.3 43.820 89 48 2 141 228 435 522 2.73e-16 82.0
Msa1167280 AT1G33240.1 60.606 99 35 2 141 239 62 156 6.22e-30 124
Msa1167280 AT1G33240.1 43.820 89 48 2 141 228 435 522 2.42e-16 82.4
Msa1167280 AT1G33240.2 43.820 89 48 2 141 228 396 483 2.49e-16 82.4
Msa1167280 AT1G33240.2 64.407 59 18 1 181 239 62 117 2.72e-15 79.0
Msa1167280 AT5G28300.1 38.614 101 50 4 141 230 459 558 1.74e-12 70.1
Msa1167280 AT5G47660.1 41.758 91 45 4 141 228 303 388 1.37e-11 66.6

Find 116 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATATTATTACTTATT+AGG 0.192936 7_4:+59696865 Msa1167280:three_prime_UTR
GCAAAGCATAAATGATAATT+AGG 0.220249 7_4:-59697087 None:intergenic
AGCTAGGGATGCTGCTTTAA+TGG 0.226192 7_4:+59696387 Msa1167280:CDS
ATTATTGCTTTCTCCATATA+AGG 0.243458 7_4:-59695942 None:intergenic
CGACAACTTGAAGCCTTATA+TGG 0.245987 7_4:+59695929 Msa1167280:CDS
TATTACTTATTAGGTAATTA+AGG 0.265081 7_4:+59696874 Msa1167280:three_prime_UTR
AAACTTCAACTCACTGGTTT+TGG 0.276459 7_4:-59696753 None:intergenic
CTTCCATTTCCATGAGATAA+TGG 0.307022 7_4:-59694626 None:intergenic
TACTATCATAGTGTTGATTA+TGG 0.322614 7_4:-59694650 None:intergenic
TGATTCACAGCTGAAGAAAT+TGG 0.325251 7_4:+59696210 Msa1167280:CDS
TTGGGGTATGACACTAATTC+AGG 0.332866 7_4:+59697049 Msa1167280:three_prime_UTR
CTCTTTGGGATCAACTTTCT+AGG 0.339621 7_4:+59695075 Msa1167280:CDS
GCTTCAACTCCTTCATTTAG+TGG 0.343719 7_4:+59694915 Msa1167280:CDS
TTCAAAGAAGCTACTCAAAA+AGG 0.354316 7_4:+59695050 Msa1167280:CDS
GGAGTAGTGGAAGAAGCTTC+TGG 0.362256 7_4:+59696164 Msa1167280:CDS
TTGATCATTAACATCACAAT+AGG 0.364480 7_4:-59696587 None:intergenic
TTATGCTTTGCAAATGGATC+TGG 0.367317 7_4:+59697099 Msa1167280:three_prime_UTR
CATACCCCAACAACACTTGA+TGG 0.388209 7_4:-59697036 None:intergenic
AAATTGTTGGTAGTTGATCT+TGG 0.391857 7_4:-59694711 None:intergenic
CACAAAGACATTGGAACAAA+AGG 0.401812 7_4:+59696264 Msa1167280:CDS
GTGTTGTTGATGTGGGTTGC+CGG 0.402706 7_4:-59694757 None:intergenic
ATTCCATTATCTCATGGAAA+TGG 0.406779 7_4:+59694623 Msa1167280:CDS
ATATTCCATCAAGTGTTGTT+GGG 0.413234 7_4:+59697031 Msa1167280:three_prime_UTR
ATACTATTGAAATTTGAGAT+AGG 0.414627 7_4:-59694597 None:intergenic
TGTTGATGTGGGTTGCCGGC+GGG 0.415527 7_4:-59694753 None:intergenic
AATGATATGTAATTCATGTA+TGG 0.419239 7_4:+59697157 Msa1167280:three_prime_UTR
TATCATTTATGCTTTGCAAA+TGG 0.427237 7_4:+59697093 Msa1167280:three_prime_UTR
GAAACAAGAGAAAGAAAGGT+TGG 0.430312 7_4:+59696321 Msa1167280:CDS
CCCTCAGTACTCATCAAGAA+TGG 0.434497 7_4:-59696685 None:intergenic
TGTGGGAGTGAAGATGAAGA+AGG 0.446001 7_4:-59695965 None:intergenic
GGAGGAAACAAGAGAAAGAA+AGG 0.446373 7_4:+59696317 Msa1167280:CDS
ATTGGCGTTGATGCTTCAAC+TGG 0.446616 7_4:+59694966 Msa1167280:CDS
GCTGAAACTACTGGTTTCAT+TGG 0.450069 7_4:+59694948 Msa1167280:CDS
TTTGGGCTAAAGAAAGAGCT+TGG 0.456386 7_4:+59696359 Msa1167280:CDS
ATGGGGACCATTACCCTTGT+TGG 0.461250 7_4:+59694402 None:intergenic
AAACATTTCCTGATTGTTGT+TGG 0.473343 7_4:-59696002 None:intergenic
GGAGAAGCAAGAAGAATGGT+TGG 0.477059 7_4:+59696234 Msa1167280:CDS
AAAGAGCTTGGATTGAAGCT+AGG 0.477669 7_4:+59696371 Msa1167280:CDS
CTTCTTTGAATTGAGGATCA+AGG 0.477978 7_4:-59695037 None:intergenic
TATATTCCATCAAGTGTTGT+TGG 0.481226 7_4:+59697030 Msa1167280:three_prime_UTR
TATCACAGTGTTTGTTAATG+TGG 0.481655 7_4:-59696030 None:intergenic
GGAAAAGCAGGAAGACAAGA+TGG 0.483853 7_4:+59695887 Msa1167280:CDS
GTGGGAGAATTACAACTTGA+AGG 0.483975 7_4:+59696717 Msa1167280:CDS
GTTGTGAAACTTCAACTCAC+TGG 0.485337 7_4:-59696759 None:intergenic
ATTAAGACCAACAAGGGTAA+TGG 0.488890 7_4:-59694409 None:intergenic
AAGACCAAGGAAGGAAAAGC+AGG 0.489921 7_4:+59695875 Msa1167280:CDS
ATTGCATATATTATAAGATA+AGG 0.492375 7_4:-59694554 None:intergenic
TGAGTAGCTTCTTTGAATTG+AGG 0.494836 7_4:-59695044 None:intergenic
ATCTCATAGTGTTGTTGATG+TGG 0.498646 7_4:-59694765 None:intergenic
TATAATGTTAACAATGGAGA+TGG 0.503073 7_4:+59696556 Msa1167280:CDS
AATGATCAAAGGGAAGAACT+TGG 0.504968 7_4:+59696601 Msa1167280:CDS
ACTCAATCTTCTTCTCATGA+TGG 0.508615 7_4:+59696454 Msa1167280:CDS
AATTTAGAAGCTGAAACTAC+TGG 0.509455 7_4:+59694939 Msa1167280:CDS
CACTATGAGATGATGATGTT+TGG 0.510125 7_4:+59694777 Msa1167280:CDS
TATCATATTCCATTATCTCA+TGG 0.512431 7_4:+59694617 Msa1167280:CDS
CCTCAGTACTCATCAAGAAT+GGG 0.515932 7_4:-59696684 None:intergenic
TTGTGATGTTAATGATCAAA+GGG 0.516121 7_4:+59696591 Msa1167280:CDS
TGGAAATAATAAGAAGAGAA+AGG 0.518093 7_4:+59696474 Msa1167280:CDS
TTGATGCTTCAACTGGAAGA+TGG 0.518598 7_4:+59694973 Msa1167280:CDS
ATCACAGTGTTTGTTAATGT+GGG 0.521709 7_4:-59696029 None:intergenic
TATATTATAAGATAAGGAAA+AGG 0.521721 7_4:-59694548 None:intergenic
TGTTTATATAATGTTAACAA+TGG 0.527902 7_4:+59696550 Msa1167280:CDS
CCATTCTTGATGAGTACTGA+GGG 0.532198 7_4:+59696685 Msa1167280:CDS
GGGTGTTAAGAGAAGAAGAG+TGG 0.532295 7_4:+59696296 Msa1167280:CDS
AAGAGCTTGGATTGAAGCTA+GGG 0.532871 7_4:+59696372 Msa1167280:CDS
TACTGAGGGAGGAAATATGT+GGG 0.537099 7_4:+59696699 Msa1167280:CDS
TCTAAATTACCACTAAATGA+AGG 0.538013 7_4:-59694924 None:intergenic
GTTGATGTGGGTTGCCGGCG+GGG 0.539548 7_4:-59694752 None:intergenic
ATTGTGATGTTAATGATCAA+AGG 0.541913 7_4:+59696590 Msa1167280:CDS
AAGAGCTAACTGAAGAAATG+AGG 0.545636 7_4:+59696823 Msa1167280:three_prime_UTR
TGGTGGAGAAGCAAGAAGAA+TGG 0.548730 7_4:+59696230 Msa1167280:CDS
TCTCATAGTGTTGTTGATGT+GGG 0.555577 7_4:-59694764 None:intergenic
CTCCGCCGTAGGGAAATTGT+TGG 0.561007 7_4:-59694724 None:intergenic
GTTAACAATGGAGATGGAGC+TGG 0.562473 7_4:+59696562 Msa1167280:CDS
TTGTTGATGTGGGTTGCCGG+CGG 0.563154 7_4:-59694754 None:intergenic
AGTGTAAGAGTCTCTTGTCT+AGG 0.565795 7_4:-59694996 None:intergenic
ATGATAACAACAATGTTGAT+CGG 0.565825 7_4:+59696524 Msa1167280:CDS
TTCACAGCTGAAGAAATTGG+TGG 0.567445 7_4:+59696213 Msa1167280:CDS
GGGAGAGTACAAACAAATGA+TGG 0.567681 7_4:+59696622 Msa1167280:CDS
ACAGTAACAGCAGCAACAGC+AGG 0.567957 7_4:-59694858 None:intergenic
GCACTAGTGGTGGTGTTGGT+AGG 0.568004 7_4:-59694894 None:intergenic
GAAAAGCAGGAAGACAAGAT+GGG 0.570202 7_4:+59695888 Msa1167280:CDS
GCGGGGAATAGCTCCGCCGT+AGG 0.579850 7_4:-59694735 None:intergenic
TATTCCATCAAGTGTTGTTG+GGG 0.581444 7_4:+59697032 Msa1167280:three_prime_UTR
AGTGGTGGTGTTGGTAGGAG+TGG 0.582934 7_4:-59694889 None:intergenic
CAAAGAGAATGAGTTCTCCA+TGG 0.584262 7_4:+59696126 Msa1167280:CDS
ATGATCAAAGGGAAGAACTT+GGG 0.587215 7_4:+59696602 Msa1167280:CDS
GGAGAAACTCACAAAGACAT+TGG 0.587360 7_4:+59696255 Msa1167280:CDS
CGGGGAATAGCTCCGCCGTA+GGG 0.588808 7_4:-59694734 None:intergenic
AACATGGCTATCAAAGGAGT+GGG 0.590438 7_4:+59695807 Msa1167280:CDS
TGAAGCACTAGTGGTGGTGT+TGG 0.592317 7_4:-59694898 None:intergenic
CCCATTCTTGATGAGTACTG+AGG 0.594659 7_4:+59696684 Msa1167280:CDS
CTCAAATATTAAGACCAACA+AGG 0.598102 7_4:-59694416 None:intergenic
GTGAAGAACATGGCTATCAA+AGG 0.598664 7_4:+59695801 Msa1167280:CDS
AGGATAATGTGTGAAGAACA+TGG 0.603245 7_4:+59695791 Msa1167280:intron
CGAATTCAGTGGAGTTTGTG+AGG 0.604333 7_4:-59696060 None:intergenic
GAACATGGCTATCAAAGGAG+TGG 0.606340 7_4:+59695806 Msa1167280:CDS
AGAGCTAACTGAAGAAATGA+GGG 0.609109 7_4:+59696824 Msa1167280:three_prime_UTR
AAGATGTTAAGCGGCAGAGT+CGG 0.611463 7_4:-59694460 None:intergenic
TGATGATCATAGTACTCATG+AGG 0.611714 7_4:+59696099 Msa1167280:CDS
TCAAATATTAAGACCAACAA+GGG 0.614018 7_4:-59694415 None:intergenic
GATGATCATAGTACTCATGA+GGG 0.620992 7_4:+59696100 Msa1167280:CDS
TGAAGATTGAAGATGTTAAG+CGG 0.622485 7_4:-59694469 None:intergenic
TGAAGGAGTTGAAGCACTAG+TGG 0.623923 7_4:-59694907 None:intergenic
CGATGATGTGTCGAATTCAG+TGG 0.625749 7_4:-59696071 None:intergenic
AACTACCAACAATTTCCCTA+CGG 0.632466 7_4:+59694719 Msa1167280:CDS
TGTTAAGAGAAGAAGAGTGG+AGG 0.635425 7_4:+59696299 Msa1167280:CDS
TAGTGGAAGAAGCTTCTGGA+AGG 0.636390 7_4:+59696168 Msa1167280:CDS
CTAGAAAGTTGATCCCAAAG+AGG 0.637397 7_4:-59695074 None:intergenic
ACGGCGGAGCTATTCCCCGC+CGG 0.640713 7_4:+59694738 Msa1167280:CDS
GTACTGAGGGAGGAAATATG+TGG 0.650852 7_4:+59696698 Msa1167280:CDS
TACCAACAATTTCCCTACGG+CGG 0.660564 7_4:+59694722 Msa1167280:CDS
TTCTTGATGAGTACTGAGGG+AGG 0.678329 7_4:+59696688 Msa1167280:CDS
ATGATCATAGTACTCATGAG+GGG 0.712141 7_4:+59696101 Msa1167280:CDS
AGGAGTTGAAGCACTAGTGG+TGG 0.716487 7_4:-59694904 None:intergenic
ACAAAATCATGAAGACAACG+AGG 0.773702 7_4:-59694822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAGAGATAATAAAA+GGG - chr7_4:59695402-59695421 None:intergenic 10.0%
!! TTAAATAAAGAGATAATAAA+AGG - chr7_4:59695403-59695422 None:intergenic 10.0%
!!! TTTATATTTTTTTGACAAAA+TGG - chr7_4:59696950-59696969 None:intergenic 10.0%
!! TTGTCAAAAAAATATAAATA+TGG + chr7_4:59696952-59696971 Msa1167280:three_prime_UTR 10.0%
!! TATATTATAAGATAAGGAAA+AGG - chr7_4:59694551-59694570 None:intergenic 15.0%
!! ATTGCATATATTATAAGATA+AGG - chr7_4:59694557-59694576 None:intergenic 15.0%
!! TGTTTATATAATGTTAACAA+TGG + chr7_4:59696550-59696569 Msa1167280:CDS 15.0%
!! TGATGATATTATTACTTATT+AGG + chr7_4:59696865-59696884 Msa1167280:three_prime_UTR 15.0%
!! TATTACTTATTAGGTAATTA+AGG + chr7_4:59696874-59696893 Msa1167280:three_prime_UTR 15.0%
!!! ATCAATATTTTTATCAATCT+CGG + chr7_4:59696903-59696922 Msa1167280:three_prime_UTR 15.0%
!!! ATACTATTGAAATTTGAGAT+AGG - chr7_4:59694600-59694619 None:intergenic 20.0%
!! AAACATACCAAATAATTTGA+AGG - chr7_4:59695135-59695154 None:intergenic 20.0%
!!! TTTTTGTGGAATTTTTGTTA+AGG + chr7_4:59695248-59695267 Msa1167280:intron 20.0%
!!! TTTAAAATACACTCAACTTT+CGG + chr7_4:59695418-59695437 Msa1167280:intron 20.0%
!!! ATGTCATTTAAATTGTCAAT+AGG - chr7_4:59695574-59695593 None:intergenic 20.0%
!! AAAACAACAAAAGCTTAATT+GGG - chr7_4:59695733-59695752 None:intergenic 20.0%
!! AAAAACAACAAAAGCTTAAT+TGG - chr7_4:59695734-59695753 None:intergenic 20.0%
!!! ACAACTTTTTTTTTCTTCTA+AGG + chr7_4:59696777-59696796 Msa1167280:three_prime_UTR 20.0%
!!! ACAAAAAGTTAGTTTAATGA+TGG + chr7_4:59697002-59697021 Msa1167280:three_prime_UTR 20.0%
!!! CAAAAAGTTAGTTTAATGAT+GGG + chr7_4:59697003-59697022 Msa1167280:three_prime_UTR 20.0%
!! AATGATATGTAATTCATGTA+TGG + chr7_4:59697157-59697176 Msa1167280:three_prime_UTR 20.0%
! TCAAATATTAAGACCAACAA+GGG - chr7_4:59694418-59694437 None:intergenic 25.0%
! TATCATATTCCATTATCTCA+TGG + chr7_4:59694617-59694636 Msa1167280:CDS 25.0%
!!! TACTATCATAGTGTTGATTA+TGG - chr7_4:59694653-59694672 None:intergenic 25.0%
! TCTAAATTACCACTAAATGA+AGG - chr7_4:59694927-59694946 None:intergenic 25.0%
!! TCCTTTTCCTTCAAATTATT+TGG + chr7_4:59695125-59695144 Msa1167280:intron 25.0%
! ACCAAATAATTTGAAGGAAA+AGG - chr7_4:59695129-59695148 None:intergenic 25.0%
! TTTGTGTTAACAAAAATGAG+TGG + chr7_4:59695152-59695171 Msa1167280:intron 25.0%
! TAATTATTTATGCTTGCACT+TGG + chr7_4:59695202-59695221 Msa1167280:intron 25.0%
! CAAAAATTCCACAAAAAGTA+GGG - chr7_4:59695245-59695264 None:intergenic 25.0%
! ACAAAAATTCCACAAAAAGT+AGG - chr7_4:59695246-59695265 None:intergenic 25.0%
!! TTTTGTTAAGGTTCTTTTAC+TGG + chr7_4:59695260-59695279 Msa1167280:intron 25.0%
! AAAAAAGGTAGTACTAATCT+TGG - chr7_4:59695337-59695356 None:intergenic 25.0%
! ACAATTTCAAAAGGGAAAAA+AGG - chr7_4:59695352-59695371 None:intergenic 25.0%
! AATTAATATTGAACCCTAGT+TGG - chr7_4:59695706-59695725 None:intergenic 25.0%
! AAACAACAAAAGCTTAATTG+GGG - chr7_4:59695732-59695751 None:intergenic 25.0%
! ATTATTGCTTTCTCCATATA+AGG - chr7_4:59695945-59695964 None:intergenic 25.0%
!!! TGGTACAAAAATTGTTTTGT+GGG - chr7_4:59695985-59696004 None:intergenic 25.0%
!!! TTGGTACAAAAATTGTTTTG+TGG - chr7_4:59695986-59696005 None:intergenic 25.0%
!!! TGGAAAAAGAGCATAAATTT+TGG + chr7_4:59696341-59696360 Msa1167280:CDS 25.0%
!!! GGAAAAAGAGCATAAATTTT+GGG + chr7_4:59696342-59696361 Msa1167280:CDS 25.0%
! TGGAAATAATAAGAAGAGAA+AGG + chr7_4:59696474-59696493 Msa1167280:CDS 25.0%
! ATGATAACAACAATGTTGAT+CGG + chr7_4:59696524-59696543 Msa1167280:CDS 25.0%
! TATAATGTTAACAATGGAGA+TGG + chr7_4:59696556-59696575 Msa1167280:CDS 25.0%
! TTGATCATTAACATCACAAT+AGG - chr7_4:59696590-59696609 None:intergenic 25.0%
! ATTGTGATGTTAATGATCAA+AGG + chr7_4:59696590-59696609 Msa1167280:CDS 25.0%
! TTGTGATGTTAATGATCAAA+GGG + chr7_4:59696591-59696610 Msa1167280:CDS 25.0%
! GCAAAGCATAAATGATAATT+AGG - chr7_4:59697090-59697109 None:intergenic 25.0%
! TATCATTTATGCTTTGCAAA+TGG + chr7_4:59697093-59697112 Msa1167280:three_prime_UTR 25.0%
CTCAAATATTAAGACCAACA+AGG - chr7_4:59694419-59694438 None:intergenic 30.0%
TGAAGATTGAAGATGTTAAG+CGG - chr7_4:59694472-59694491 None:intergenic 30.0%
ATTCCATTATCTCATGGAAA+TGG + chr7_4:59694623-59694642 Msa1167280:CDS 30.0%
!! AAATTGTTGGTAGTTGATCT+TGG - chr7_4:59694714-59694733 None:intergenic 30.0%
AATTTAGAAGCTGAAACTAC+TGG + chr7_4:59694939-59694958 Msa1167280:CDS 30.0%
TTCAAAGAAGCTACTCAAAA+AGG + chr7_4:59695050-59695069 Msa1167280:CDS 30.0%
!!! AATTTTGTCCCTACTTTTTG+TGG + chr7_4:59695234-59695253 Msa1167280:intron 30.0%
AACACTTTGCACTTAAAAGA+GGG - chr7_4:59695378-59695397 None:intergenic 30.0%
AAACACTTTGCACTTAAAAG+AGG - chr7_4:59695379-59695398 None:intergenic 30.0%
! TTTTGTGAGCAAATTCATTG+AGG + chr7_4:59695457-59695476 Msa1167280:intron 30.0%
TTTGTGAGCAAATTCATTGA+GGG + chr7_4:59695458-59695477 Msa1167280:intron 30.0%
CTAATTCTATCTGTCTAACA+TGG + chr7_4:59695505-59695524 Msa1167280:intron 30.0%
! CAATAGGAATGAGTTTTTGA+AGG - chr7_4:59695558-59695577 None:intergenic 30.0%
ACATATTACACGACAATACA+TGG + chr7_4:59695602-59695621 Msa1167280:intron 30.0%
AATATTCATAGCTCCAACTA+GGG + chr7_4:59695690-59695709 Msa1167280:intron 30.0%
AACAACAAAAGCTTAATTGG+GGG - chr7_4:59695731-59695750 None:intergenic 30.0%
! CATTGCTTGTATTGATGTTA+AGG + chr7_4:59695771-59695790 Msa1167280:intron 30.0%
CAAATACTACAAAAAGACCA+AGG + chr7_4:59695862-59695881 Msa1167280:CDS 30.0%
! TTTTTGTACCAACAACAATC+AGG + chr7_4:59695994-59696013 Msa1167280:CDS 30.0%
AAACATTTCCTGATTGTTGT+TGG - chr7_4:59696005-59696024 None:intergenic 30.0%
! ATCACAGTGTTTGTTAATGT+GGG - chr7_4:59696032-59696051 None:intergenic 30.0%
! TATCACAGTGTTTGTTAATG+TGG - chr7_4:59696033-59696052 None:intergenic 30.0%
GAAGCTTTGCAAAAATTAAC+AGG + chr7_4:59696409-59696428 Msa1167280:CDS 30.0%
ATCTCGGAGAGAAAAAAATA+TGG + chr7_4:59696919-59696938 Msa1167280:three_prime_UTR 30.0%
! TGTCTTCAATTTTTCTGTTG+AGG - chr7_4:59696983-59697002 None:intergenic 30.0%
! TATATTCCATCAAGTGTTGT+TGG + chr7_4:59697030-59697049 Msa1167280:three_prime_UTR 30.0%
! ATATTCCATCAAGTGTTGTT+GGG + chr7_4:59697031-59697050 Msa1167280:three_prime_UTR 30.0%
ATTAAGACCAACAAGGGTAA+TGG - chr7_4:59694412-59694431 None:intergenic 35.0%
CTTCCATTTCCATGAGATAA+TGG - chr7_4:59694629-59694648 None:intergenic 35.0%
AACTACCAACAATTTCCCTA+CGG + chr7_4:59694719-59694738 Msa1167280:CDS 35.0%
! TCTCATAGTGTTGTTGATGT+GGG - chr7_4:59694767-59694786 None:intergenic 35.0%
! ATCTCATAGTGTTGTTGATG+TGG - chr7_4:59694768-59694787 None:intergenic 35.0%
! CACTATGAGATGATGATGTT+TGG + chr7_4:59694777-59694796 Msa1167280:CDS 35.0%
ACAAAATCATGAAGACAACG+AGG - chr7_4:59694825-59694844 None:intergenic 35.0%
CTTCTTTGAATTGAGGATCA+AGG - chr7_4:59695040-59695059 None:intergenic 35.0%
TGAGTAGCTTCTTTGAATTG+AGG - chr7_4:59695047-59695066 None:intergenic 35.0%
TACTCAAAAAGGTCCTCTTT+GGG + chr7_4:59695061-59695080 Msa1167280:CDS 35.0%
! GAGGGTACACAATTTCAAAA+GGG - chr7_4:59695360-59695379 None:intergenic 35.0%
! AGAGGGTACACAATTTCAAA+AGG - chr7_4:59695361-59695380 None:intergenic 35.0%
TTGTGAGCAAATTCATTGAG+GGG + chr7_4:59695459-59695478 Msa1167280:intron 35.0%
CTAGTTGGAGCTATGAATAT+TGG - chr7_4:59695691-59695710 None:intergenic 35.0%
CAATATTCATAGCTCCAACT+AGG + chr7_4:59695689-59695708 Msa1167280:intron 35.0%
AGGATAATGTGTGAAGAACA+TGG + chr7_4:59695791-59695810 Msa1167280:intron 35.0%
TACTACAAAAAGACCAAGGA+AGG + chr7_4:59695866-59695885 Msa1167280:CDS 35.0%
TGATGATCATAGTACTCATG+AGG + chr7_4:59696099-59696118 Msa1167280:CDS 35.0%
GATGATCATAGTACTCATGA+GGG + chr7_4:59696100-59696119 Msa1167280:CDS 35.0%
ATGATCATAGTACTCATGAG+GGG + chr7_4:59696101-59696120 Msa1167280:CDS 35.0%
!!! CCTCTTTTTTCTCTTATCCA+TGG - chr7_4:59696146-59696165 None:intergenic 35.0%
CCATGGATAAGAGAAAAAAG+AGG + chr7_4:59696143-59696162 Msa1167280:CDS 35.0%
AAGAGAAAAAAGAGGAGTAG+TGG + chr7_4:59696151-59696170 Msa1167280:CDS 35.0%
TGATTCACAGCTGAAGAAAT+TGG + chr7_4:59696210-59696229 Msa1167280:CDS 35.0%
CACAAAGACATTGGAACAAA+AGG + chr7_4:59696264-59696283 Msa1167280:CDS 35.0%
TGGAACAAAAGGAAAAAGAG+AGG + chr7_4:59696275-59696294 Msa1167280:CDS 35.0%
GGAACAAAAGGAAAAAGAGA+GGG + chr7_4:59696276-59696295 Msa1167280:CDS 35.0%
GAAACAAGAGAAAGAAAGGT+TGG + chr7_4:59696321-59696340 Msa1167280:CDS 35.0%
ACTCAATCTTCTTCTCATGA+TGG + chr7_4:59696454-59696473 Msa1167280:CDS 35.0%
AATGATCAAAGGGAAGAACT+TGG + chr7_4:59696601-59696620 Msa1167280:CDS 35.0%
ATGATCAAAGGGAAGAACTT+GGG + chr7_4:59696602-59696621 Msa1167280:CDS 35.0%
!!! AAACTTCAACTCACTGGTTT+TGG - chr7_4:59696756-59696775 None:intergenic 35.0%
AAGAGCTAACTGAAGAAATG+AGG + chr7_4:59696823-59696842 Msa1167280:three_prime_UTR 35.0%
AGAGCTAACTGAAGAAATGA+GGG + chr7_4:59696824-59696843 Msa1167280:three_prime_UTR 35.0%
! TATTCCATCAAGTGTTGTTG+GGG + chr7_4:59697032-59697051 Msa1167280:three_prime_UTR 35.0%
TTATGCTTTGCAAATGGATC+TGG + chr7_4:59697099-59697118 Msa1167280:three_prime_UTR 35.0%
! TGAGTCTTTTCATTGACGAC+AGG + chr7_4:59694435-59694454 Msa1167280:five_prime_UTR 40.0%
GCTTCAACTCCTTCATTTAG+TGG + chr7_4:59694915-59694934 Msa1167280:CDS 40.0%
!! GCTGAAACTACTGGTTTCAT+TGG + chr7_4:59694948-59694967 Msa1167280:CDS 40.0%
TTGATGCTTCAACTGGAAGA+TGG + chr7_4:59694973-59694992 Msa1167280:CDS 40.0%
AGTGTAAGAGTCTCTTGTCT+AGG - chr7_4:59694999-59695018 None:intergenic 40.0%
CTACTCAAAAAGGTCCTCTT+TGG + chr7_4:59695060-59695079 Msa1167280:CDS 40.0%
! CTAGAAAGTTGATCCCAAAG+AGG - chr7_4:59695077-59695096 None:intergenic 40.0%
!! CTCTTTGGGATCAACTTTCT+AGG + chr7_4:59695075-59695094 Msa1167280:CDS 40.0%
TTGGGATCAACTTTCTAGGT+AGG + chr7_4:59695079-59695098 Msa1167280:intron 40.0%
TGTGAGCAAATTCATTGAGG+GGG + chr7_4:59695460-59695479 Msa1167280:intron 40.0%
! AAATTCATTGAGGGGGTACA+AGG + chr7_4:59695467-59695486 Msa1167280:intron 40.0%
! AATTCATTGAGGGGGTACAA+GGG + chr7_4:59695468-59695487 Msa1167280:intron 40.0%
AGGAAGAGTCTGTGATTGAT+TGG - chr7_4:59695538-59695557 None:intergenic 40.0%
!! GTACGTAGCATGTGTTACTT+TGG + chr7_4:59695660-59695679 Msa1167280:intron 40.0%
GTGAAGAACATGGCTATCAA+AGG + chr7_4:59695801-59695820 Msa1167280:CDS 40.0%
AACATGGCTATCAAAGGAGT+GGG + chr7_4:59695807-59695826 Msa1167280:CDS 40.0%
AAAGGAGTGGGAAAAAATGC+AGG + chr7_4:59695819-59695838 Msa1167280:CDS 40.0%
AAGGAGTGGGAAAAAATGCA+GGG + chr7_4:59695820-59695839 Msa1167280:CDS 40.0%
GAAAAGCAGGAAGACAAGAT+GGG + chr7_4:59695888-59695907 Msa1167280:CDS 40.0%
! CGACAACTTGAAGCCTTATA+TGG + chr7_4:59695929-59695948 Msa1167280:CDS 40.0%
CAAAGAGAATGAGTTCTCCA+TGG + chr7_4:59696126-59696145 Msa1167280:CDS 40.0%
TTCACAGCTGAAGAAATTGG+TGG + chr7_4:59696213-59696232 Msa1167280:CDS 40.0%
GGAGAAACTCACAAAGACAT+TGG + chr7_4:59696255-59696274 Msa1167280:CDS 40.0%
TGTTAAGAGAAGAAGAGTGG+AGG + chr7_4:59696299-59696318 Msa1167280:CDS 40.0%
GGAGGAAACAAGAGAAAGAA+AGG + chr7_4:59696317-59696336 Msa1167280:CDS 40.0%
TTTGGGCTAAAGAAAGAGCT+TGG + chr7_4:59696359-59696378 Msa1167280:CDS 40.0%
AAAGAGCTTGGATTGAAGCT+AGG + chr7_4:59696371-59696390 Msa1167280:CDS 40.0%
AAGAGCTTGGATTGAAGCTA+GGG + chr7_4:59696372-59696391 Msa1167280:CDS 40.0%
! GGGAGAGTACAAACAAATGA+TGG + chr7_4:59696622-59696641 Msa1167280:CDS 40.0%
CCTCAGTACTCATCAAGAAT+GGG - chr7_4:59696687-59696706 None:intergenic 40.0%
!! CCATTCTTGATGAGTACTGA+GGG + chr7_4:59696685-59696704 Msa1167280:CDS 40.0%
TACTGAGGGAGGAAATATGT+GGG + chr7_4:59696699-59696718 Msa1167280:CDS 40.0%
GTGGGAGAATTACAACTTGA+AGG + chr7_4:59696717-59696736 Msa1167280:CDS 40.0%
GTTGTGAAACTTCAACTCAC+TGG - chr7_4:59696762-59696781 None:intergenic 40.0%
TTGGGGTATGACACTAATTC+AGG + chr7_4:59697049-59697068 Msa1167280:three_prime_UTR 40.0%
AAGATGTTAAGCGGCAGAGT+CGG - chr7_4:59694463-59694482 None:intergenic 45.0%
TACCAACAATTTCCCTACGG+CGG + chr7_4:59694722-59694741 Msa1167280:CDS 45.0%
! TGAAGGAGTTGAAGCACTAG+TGG - chr7_4:59694910-59694929 None:intergenic 45.0%
!! ATTGGCGTTGATGCTTCAAC+TGG + chr7_4:59694966-59694985 Msa1167280:CDS 45.0%
GAACATGGCTATCAAAGGAG+TGG + chr7_4:59695806-59695825 Msa1167280:CDS 45.0%
AAGACCAAGGAAGGAAAAGC+AGG + chr7_4:59695875-59695894 Msa1167280:CDS 45.0%
!! TCTTCCTGCTTTTCCTTCCT+TGG - chr7_4:59695882-59695901 None:intergenic 45.0%
GGAAAAGCAGGAAGACAAGA+TGG + chr7_4:59695887-59695906 Msa1167280:CDS 45.0%
TGTGGGAGTGAAGATGAAGA+AGG - chr7_4:59695968-59695987 None:intergenic 45.0%
CGAATTCAGTGGAGTTTGTG+AGG - chr7_4:59696063-59696082 None:intergenic 45.0%
CGATGATGTGTCGAATTCAG+TGG - chr7_4:59696074-59696093 None:intergenic 45.0%
TAGTGGAAGAAGCTTCTGGA+AGG + chr7_4:59696168-59696187 Msa1167280:CDS 45.0%
TGGTGGAGAAGCAAGAAGAA+TGG + chr7_4:59696230-59696249 Msa1167280:CDS 45.0%
GGAGAAGCAAGAAGAATGGT+TGG + chr7_4:59696234-59696253 Msa1167280:CDS 45.0%
GGGTGTTAAGAGAAGAAGAG+TGG + chr7_4:59696296-59696315 Msa1167280:CDS 45.0%
!! AGCTAGGGATGCTGCTTTAA+TGG + chr7_4:59696387-59696406 Msa1167280:CDS 45.0%
GTTAACAATGGAGATGGAGC+TGG + chr7_4:59696562-59696581 Msa1167280:CDS 45.0%
! CCCATTCTTGATGAGTACTG+AGG + chr7_4:59696684-59696703 Msa1167280:CDS 45.0%
CCCTCAGTACTCATCAAGAA+TGG - chr7_4:59696688-59696707 None:intergenic 45.0%
!! TTCTTGATGAGTACTGAGGG+AGG + chr7_4:59696688-59696707 Msa1167280:CDS 45.0%
GTACTGAGGGAGGAAATATG+TGG + chr7_4:59696698-59696717 Msa1167280:CDS 45.0%
CATACCCCAACAACACTTGA+TGG - chr7_4:59697039-59697058 None:intergenic 45.0%
! GTGTTGTTGATGTGGGTTGC+CGG - chr7_4:59694760-59694779 None:intergenic 50.0%
ACAGTAACAGCAGCAACAGC+AGG - chr7_4:59694861-59694880 None:intergenic 50.0%
! TGAAGCACTAGTGGTGGTGT+TGG - chr7_4:59694901-59694920 None:intergenic 50.0%
! AGGAGTTGAAGCACTAGTGG+TGG - chr7_4:59694907-59694926 None:intergenic 50.0%
! GGAGTAGTGGAAGAAGCTTC+TGG + chr7_4:59696164-59696183 Msa1167280:CDS 50.0%
CTCCGCCGTAGGGAAATTGT+TGG - chr7_4:59694727-59694746 None:intergenic 55.0%
! TTGTTGATGTGGGTTGCCGG+CGG - chr7_4:59694757-59694776 None:intergenic 55.0%
!! AGTGGTGGTGTTGGTAGGAG+TGG - chr7_4:59694892-59694911 None:intergenic 55.0%
!! GCACTAGTGGTGGTGTTGGT+AGG - chr7_4:59694897-59694916 None:intergenic 55.0%
! TGTTGATGTGGGTTGCCGGC+GGG - chr7_4:59694756-59694775 None:intergenic 60.0%
CGGGGAATAGCTCCGCCGTA+GGG - chr7_4:59694737-59694756 None:intergenic 65.0%
! GTTGATGTGGGTTGCCGGCG+GGG - chr7_4:59694755-59694774 None:intergenic 65.0%
GCGGGGAATAGCTCCGCCGT+AGG - chr7_4:59694738-59694757 None:intergenic 70.0%
ACGGCGGAGCTATTCCCCGC+CGG + chr7_4:59694738-59694757 Msa1167280:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59694404 59697197 59694404 ID=Msa1167280;Name=Msa1167280
chr7_4 mRNA 59694404 59697197 59694404 ID=Msa1167280-mRNA-1;Parent=Msa1167280;Name=Msa1167280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166|1|1|1|1|1|2|432|499
chr7_4 exon 59694404 59695096 59694404 ID=Msa1167280-mRNA-1:exon:18543;Parent=Msa1167280-mRNA-1
chr7_4 exon 59695793 59697197 59695793 ID=Msa1167280-mRNA-1:exon:18544;Parent=Msa1167280-mRNA-1
chr7_4 five_prime_UTR 59694404 59694569 59694404 ID=Msa1167280-mRNA-1:five_prime_utr;Parent=Msa1167280-mRNA-1
chr7_4 CDS 59694570 59695096 59694570 ID=Msa1167280-mRNA-1:cds;Parent=Msa1167280-mRNA-1
chr7_4 CDS 59695793 59696765 59695793 ID=Msa1167280-mRNA-1:cds;Parent=Msa1167280-mRNA-1
chr7_4 three_prime_UTR 59696766 59697197 59696766 ID=Msa1167280-mRNA-1:three_prime_utr;Parent=Msa1167280-mRNA-1
Gene Sequence

>Msa1167280

ATGCAATATCTCTTTCACTCTTCTATTCCTATCTCAAATTTCAATAGTATCATATTCCATTATCTCATGGAAATGGAAGACCATAATCAACACTATGATAGTAATAGTATCACTGATCTCAGACAACTCATTAATATTGTTCCAAGATCAACTACCAACAATTTCCCTACGGCGGAGCTATTCCCCGCCGGCAACCCACATCAACAACACTATGAGATGATGATGTTTGGTAGACAAGTAGCAGATATAATGCCTCGTTGTCTTCATGATTTTGTTTCAACAGATTCACCTGCTGTTGCTGCTGTTACTGTTGCTACTGCCACTCCTACCAACACCACCACTAGTGCTTCAACTCCTTCATTTAGTGGTAATTTAGAAGCTGAAACTACTGGTTTCATTGGCGTTGATGCTTCAACTGGAAGATGGCCTAGACAAGAGACTCTTACACTTCTTGAGATTAGATCTCGCCTTGATCCTCAATTCAAAGAAGCTACTCAAAAAGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGCTATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAGACCAAGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTTCGACAACTTGAAGCCTTATATGGAGAAAGCAATAATCCTTCTTCATCTTCACTCCCACAAAACAATTTTTGTACCAACAACAATCAGGAAATGTTTCATTCCCACATTAACAAACACTGTGATAGTCTCAGCCTCACAAACTCCACTGAATTCGACACATCATCGTCAGATGATGATCATAGTACTCATGAGGGGATCAAAGAGAATGAGTTCTCCATGGATAAGAGAAAAAAGAGGAGTAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAGCTGAAGAAATTGGTGGAGAAGCAAGAAGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAAGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGAAAGAAAGGTTGGAAAAAGAGCATAAATTTTGGGCTAAAGAAAGAGCTTGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAAAAATTAACAGGTAATAATGATGAGATAATAAAGACTCAATCTTCTTCTCATGATGGAAATAATAAGAAGAGAAAGGAAAACACAAGAAGTTGTTTTTACTTTGATGATAACAACAATGTTGATCGGTCTTGTTTATATAATGTTAACAATGGAGATGGAGCTGGTTCCTATTGTGATGTTAATGATCAAAGGGAAGAACTTGGGAGAGTACAAACAAATGATGGTTCAAATTCTAATAATGTTGTTGCAGCTGAAAGTTGTTTCCCATTCTTGATGAGTACTGAGGGAGGAAATATGTGGGAGAATTACAACTTGAAGGTTAACAAAGCAAACCAAAACCAGTGA

Protein sequence

>Msa1167280

MQYLFHSSIPISNFNSIIFHYLMEMEDHNQHYDSNSITDLRQLINIVPRSTTNNFPTAELFPAGNPHQQHYEMMMFGRQVADIMPRCLHDFVSTDSPAVAAVTVATATPTNTTTSASTPSFSGNLEAETTGFIGVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGESNNPSSSSLPQNNFCTNNNQEMFHSHINKHCDSLSLTNSTEFDTSSSDDDHSTHEGIKENEFSMDKRKKRSSGRSFWKVKIKDFIDSQLKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALQKLTGNNDEIIKTQSSSHDGNNKKRKENTRSCFYFDDNNNVDRSCLYNVNNGDGAGSYCDVNDQREELGRVQTNDGSNSNNVVAAESCFPFLMSTEGGNMWENYNLKVNKANQNQ*