Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1167280 | XP_039684219.1 | 95.625 | 480 | 13 | 3 | 23 | 499 | 1 | 475 | 0.0 | 956 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1167280 | sp|Q9LZS0|PTL_ARATH | 45.972 | 422 | 165 | 12 | 23 | 409 | 1 | 394 | 3.94e-93 | 298 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1167280 | A0A396H5V1 | 95.625 | 480 | 13 | 3 | 23 | 499 | 1 | 475 | 0.0 | 956 |
Gene ID | Type | Classification |
---|---|---|
Msa1167280 | TF | Trihelix |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000190 | Msa1167280 | 0.801624 | 8.246240e-49 | -8.615850e-47 |
Msa0016670 | Msa1167280 | 0.804461 | 2.136483e-49 | -8.615850e-47 |
Msa0017510 | Msa1167280 | 0.841016 | 6.136408e-58 | -8.615850e-47 |
Msa0072370 | Msa1167280 | 0.811483 | 6.846707e-51 | -8.615850e-47 |
Msa0110970 | Msa1167280 | 0.835053 | 2.098962e-56 | -8.615850e-47 |
Msa0828560 | Msa1167280 | 0.805731 | 1.158655e-49 | -8.615850e-47 |
Msa0833220 | Msa1167280 | 0.804278 | 2.332069e-49 | -8.615850e-47 |
Msa0157290 | Msa1167280 | 0.841446 | 4.729453e-58 | -8.615850e-47 |
Msa0163980 | Msa1167280 | 0.810490 | 1.123231e-50 | -8.615850e-47 |
Msa0197930 | Msa1167280 | 0.824925 | 6.198308e-54 | -8.615850e-47 |
Msa0392420 | Msa1167280 | 0.802340 | 5.876697e-49 | -8.615850e-47 |
Msa0392460 | Msa1167280 | 0.801055 | 1.078531e-48 | -8.615850e-47 |
Msa0392490 | Msa1167280 | 0.805040 | 1.617531e-49 | -8.615850e-47 |
Msa0410650 | Msa1167280 | 0.818791 | 1.629700e-52 | -8.615850e-47 |
Msa1041900 | Msa1167280 | 0.893035 | 9.141402e-75 | -8.615850e-47 |
Msa1047980 | Msa1167280 | 0.803992 | 2.675549e-49 | -8.615850e-47 |
Msa1080100 | Msa1167280 | 0.939186 | 1.939004e-99 | -8.615850e-47 |
Msa1080240 | Msa1167280 | 0.936502 | 1.568067e-97 | -8.615850e-47 |
Msa1085200 | Msa1167280 | 0.814583 | 1.430793e-51 | -8.615850e-47 |
Msa0239570 | Msa1167280 | 0.813357 | 2.666476e-51 | -8.615850e-47 |
Msa0317280 | Msa1167280 | 0.844825 | 5.948773e-59 | -8.615850e-47 |
Msa1125000 | Msa1167280 | 0.877940 | 4.198838e-69 | -8.615850e-47 |
Msa1127950 | Msa1167280 | 0.808777 | 2.621111e-50 | -8.615850e-47 |
Msa1135390 | Msa1167280 | 0.808894 | 2.474182e-50 | -8.615850e-47 |
Msa1167280 | Msa1172450 | 0.806241 | 9.052958e-50 | -8.615850e-47 |
Msa1167280 | Msa1351760 | 0.825680 | 4.106687e-54 | -8.615850e-47 |
Msa1167280 | Msa1374550 | 0.827893 | 1.216098e-54 | -8.615850e-47 |
Msa1167280 | Msa1430240 | 0.817675 | 2.916185e-52 | -8.615850e-47 |
Msa0487570 | Msa1167280 | 0.806398 | 8.385149e-50 | -8.615850e-47 |
Msa0487630 | Msa1167280 | 0.817518 | 3.162819e-52 | -8.615850e-47 |
Msa0507680 | Msa1167280 | 0.802542 | 5.340394e-49 | -8.615850e-47 |
Msa0527550 | Msa1167280 | 0.824760 | 6.777077e-54 | -8.615850e-47 |
Msa0574890 | Msa1167280 | 0.825492 | 4.550974e-54 | -8.615850e-47 |
Msa0880140 | Msa1167280 | 0.841604 | 4.295946e-58 | -8.615850e-47 |
Msa0930780 | Msa1167280 | 0.808792 | 2.602135e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1167280 | MtrunA17_Chr7g0265831 | 95.625 | 480 | 13 | 3 | 23 | 499 | 1 | 475 | 0.0 | 956 |
Msa1167280 | MtrunA17_Chr1g0179191 | 52.290 | 524 | 146 | 17 | 39 | 498 | 27 | 510 | 2.99e-153 | 446 |
Msa1167280 | MtrunA17_Chr1g0198171 | 38.161 | 435 | 209 | 16 | 39 | 435 | 10 | 422 | 1.81e-79 | 256 |
Msa1167280 | MtrunA17_Chr1g0201941 | 37.209 | 301 | 134 | 4 | 141 | 387 | 57 | 356 | 9.08e-49 | 177 |
Msa1167280 | MtrunA17_Chr1g0201941 | 43.000 | 100 | 54 | 3 | 132 | 230 | 446 | 543 | 5.77e-18 | 87.0 |
Msa1167280 | MtrunA17_Chr1g0201911 | 35.556 | 270 | 143 | 4 | 141 | 389 | 55 | 314 | 4.27e-39 | 149 |
Msa1167280 | MtrunA17_Chr1g0201911 | 41.732 | 127 | 62 | 4 | 130 | 255 | 361 | 476 | 3.43e-20 | 94.0 |
Msa1167280 | MtrunA17_Chr6g0463941 | 64.423 | 104 | 31 | 3 | 134 | 235 | 46 | 145 | 2.25e-34 | 137 |
Msa1167280 | MtrunA17_Chr6g0463941 | 44.330 | 97 | 52 | 2 | 137 | 232 | 460 | 555 | 3.93e-19 | 90.9 |
Msa1167280 | MtrunA17_Chr1g0190851 | 26.648 | 349 | 199 | 12 | 48 | 388 | 29 | 328 | 6.70e-16 | 80.5 |
Msa1167280 | MtrunA17_Chr1g0190851 | 37.634 | 93 | 54 | 3 | 141 | 230 | 418 | 509 | 1.86e-11 | 66.2 |
Msa1167280 | MtrunA17_Chr7g0273941 | 33.588 | 131 | 65 | 4 | 110 | 230 | 361 | 479 | 2.56e-14 | 75.1 |
Msa1167280 | MtrunA17_Chr2g0290511 | 32.812 | 128 | 82 | 3 | 104 | 228 | 223 | 349 | 1.99e-13 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1167280 | AT5G03680.1 | 45.972 | 422 | 165 | 12 | 23 | 409 | 1 | 394 | 4.01e-94 | 298 |
Msa1167280 | AT3G10000.1 | 39.872 | 469 | 223 | 11 | 69 | 499 | 34 | 481 | 8.11e-92 | 288 |
Msa1167280 | AT3G10000.2 | 38.166 | 469 | 221 | 12 | 69 | 499 | 34 | 471 | 5.71e-82 | 262 |
Msa1167280 | AT1G76890.2 | 34.727 | 311 | 141 | 7 | 134 | 388 | 34 | 338 | 3.91e-41 | 155 |
Msa1167280 | AT1G76890.2 | 39.437 | 142 | 73 | 3 | 134 | 274 | 390 | 519 | 2.87e-20 | 94.4 |
Msa1167280 | AT1G76880.1 | 55.856 | 111 | 43 | 2 | 121 | 231 | 46 | 150 | 1.37e-30 | 125 |
Msa1167280 | AT1G76880.1 | 43.000 | 100 | 55 | 2 | 134 | 232 | 401 | 499 | 1.81e-17 | 85.9 |
Msa1167280 | AT1G33240.3 | 60.606 | 99 | 35 | 2 | 141 | 239 | 62 | 156 | 4.77e-30 | 124 |
Msa1167280 | AT1G33240.3 | 43.820 | 89 | 48 | 2 | 141 | 228 | 435 | 522 | 2.73e-16 | 82.0 |
Msa1167280 | AT1G33240.1 | 60.606 | 99 | 35 | 2 | 141 | 239 | 62 | 156 | 6.22e-30 | 124 |
Msa1167280 | AT1G33240.1 | 43.820 | 89 | 48 | 2 | 141 | 228 | 435 | 522 | 2.42e-16 | 82.4 |
Msa1167280 | AT1G33240.2 | 43.820 | 89 | 48 | 2 | 141 | 228 | 396 | 483 | 2.49e-16 | 82.4 |
Msa1167280 | AT1G33240.2 | 64.407 | 59 | 18 | 1 | 181 | 239 | 62 | 117 | 2.72e-15 | 79.0 |
Msa1167280 | AT5G28300.1 | 38.614 | 101 | 50 | 4 | 141 | 230 | 459 | 558 | 1.74e-12 | 70.1 |
Msa1167280 | AT5G47660.1 | 41.758 | 91 | 45 | 4 | 141 | 228 | 303 | 388 | 1.37e-11 | 66.6 |
Find 116 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGATATTATTACTTATT+AGG | 0.192936 | 7_4:+59696865 | Msa1167280:three_prime_UTR |
GCAAAGCATAAATGATAATT+AGG | 0.220249 | 7_4:-59697087 | None:intergenic |
AGCTAGGGATGCTGCTTTAA+TGG | 0.226192 | 7_4:+59696387 | Msa1167280:CDS |
ATTATTGCTTTCTCCATATA+AGG | 0.243458 | 7_4:-59695942 | None:intergenic |
CGACAACTTGAAGCCTTATA+TGG | 0.245987 | 7_4:+59695929 | Msa1167280:CDS |
TATTACTTATTAGGTAATTA+AGG | 0.265081 | 7_4:+59696874 | Msa1167280:three_prime_UTR |
AAACTTCAACTCACTGGTTT+TGG | 0.276459 | 7_4:-59696753 | None:intergenic |
CTTCCATTTCCATGAGATAA+TGG | 0.307022 | 7_4:-59694626 | None:intergenic |
TACTATCATAGTGTTGATTA+TGG | 0.322614 | 7_4:-59694650 | None:intergenic |
TGATTCACAGCTGAAGAAAT+TGG | 0.325251 | 7_4:+59696210 | Msa1167280:CDS |
TTGGGGTATGACACTAATTC+AGG | 0.332866 | 7_4:+59697049 | Msa1167280:three_prime_UTR |
CTCTTTGGGATCAACTTTCT+AGG | 0.339621 | 7_4:+59695075 | Msa1167280:CDS |
GCTTCAACTCCTTCATTTAG+TGG | 0.343719 | 7_4:+59694915 | Msa1167280:CDS |
TTCAAAGAAGCTACTCAAAA+AGG | 0.354316 | 7_4:+59695050 | Msa1167280:CDS |
GGAGTAGTGGAAGAAGCTTC+TGG | 0.362256 | 7_4:+59696164 | Msa1167280:CDS |
TTGATCATTAACATCACAAT+AGG | 0.364480 | 7_4:-59696587 | None:intergenic |
TTATGCTTTGCAAATGGATC+TGG | 0.367317 | 7_4:+59697099 | Msa1167280:three_prime_UTR |
CATACCCCAACAACACTTGA+TGG | 0.388209 | 7_4:-59697036 | None:intergenic |
AAATTGTTGGTAGTTGATCT+TGG | 0.391857 | 7_4:-59694711 | None:intergenic |
CACAAAGACATTGGAACAAA+AGG | 0.401812 | 7_4:+59696264 | Msa1167280:CDS |
GTGTTGTTGATGTGGGTTGC+CGG | 0.402706 | 7_4:-59694757 | None:intergenic |
ATTCCATTATCTCATGGAAA+TGG | 0.406779 | 7_4:+59694623 | Msa1167280:CDS |
ATATTCCATCAAGTGTTGTT+GGG | 0.413234 | 7_4:+59697031 | Msa1167280:three_prime_UTR |
ATACTATTGAAATTTGAGAT+AGG | 0.414627 | 7_4:-59694597 | None:intergenic |
TGTTGATGTGGGTTGCCGGC+GGG | 0.415527 | 7_4:-59694753 | None:intergenic |
AATGATATGTAATTCATGTA+TGG | 0.419239 | 7_4:+59697157 | Msa1167280:three_prime_UTR |
TATCATTTATGCTTTGCAAA+TGG | 0.427237 | 7_4:+59697093 | Msa1167280:three_prime_UTR |
GAAACAAGAGAAAGAAAGGT+TGG | 0.430312 | 7_4:+59696321 | Msa1167280:CDS |
CCCTCAGTACTCATCAAGAA+TGG | 0.434497 | 7_4:-59696685 | None:intergenic |
TGTGGGAGTGAAGATGAAGA+AGG | 0.446001 | 7_4:-59695965 | None:intergenic |
GGAGGAAACAAGAGAAAGAA+AGG | 0.446373 | 7_4:+59696317 | Msa1167280:CDS |
ATTGGCGTTGATGCTTCAAC+TGG | 0.446616 | 7_4:+59694966 | Msa1167280:CDS |
GCTGAAACTACTGGTTTCAT+TGG | 0.450069 | 7_4:+59694948 | Msa1167280:CDS |
TTTGGGCTAAAGAAAGAGCT+TGG | 0.456386 | 7_4:+59696359 | Msa1167280:CDS |
ATGGGGACCATTACCCTTGT+TGG | 0.461250 | 7_4:+59694402 | None:intergenic |
AAACATTTCCTGATTGTTGT+TGG | 0.473343 | 7_4:-59696002 | None:intergenic |
GGAGAAGCAAGAAGAATGGT+TGG | 0.477059 | 7_4:+59696234 | Msa1167280:CDS |
AAAGAGCTTGGATTGAAGCT+AGG | 0.477669 | 7_4:+59696371 | Msa1167280:CDS |
CTTCTTTGAATTGAGGATCA+AGG | 0.477978 | 7_4:-59695037 | None:intergenic |
TATATTCCATCAAGTGTTGT+TGG | 0.481226 | 7_4:+59697030 | Msa1167280:three_prime_UTR |
TATCACAGTGTTTGTTAATG+TGG | 0.481655 | 7_4:-59696030 | None:intergenic |
GGAAAAGCAGGAAGACAAGA+TGG | 0.483853 | 7_4:+59695887 | Msa1167280:CDS |
GTGGGAGAATTACAACTTGA+AGG | 0.483975 | 7_4:+59696717 | Msa1167280:CDS |
GTTGTGAAACTTCAACTCAC+TGG | 0.485337 | 7_4:-59696759 | None:intergenic |
ATTAAGACCAACAAGGGTAA+TGG | 0.488890 | 7_4:-59694409 | None:intergenic |
AAGACCAAGGAAGGAAAAGC+AGG | 0.489921 | 7_4:+59695875 | Msa1167280:CDS |
ATTGCATATATTATAAGATA+AGG | 0.492375 | 7_4:-59694554 | None:intergenic |
TGAGTAGCTTCTTTGAATTG+AGG | 0.494836 | 7_4:-59695044 | None:intergenic |
ATCTCATAGTGTTGTTGATG+TGG | 0.498646 | 7_4:-59694765 | None:intergenic |
TATAATGTTAACAATGGAGA+TGG | 0.503073 | 7_4:+59696556 | Msa1167280:CDS |
AATGATCAAAGGGAAGAACT+TGG | 0.504968 | 7_4:+59696601 | Msa1167280:CDS |
ACTCAATCTTCTTCTCATGA+TGG | 0.508615 | 7_4:+59696454 | Msa1167280:CDS |
AATTTAGAAGCTGAAACTAC+TGG | 0.509455 | 7_4:+59694939 | Msa1167280:CDS |
CACTATGAGATGATGATGTT+TGG | 0.510125 | 7_4:+59694777 | Msa1167280:CDS |
TATCATATTCCATTATCTCA+TGG | 0.512431 | 7_4:+59694617 | Msa1167280:CDS |
CCTCAGTACTCATCAAGAAT+GGG | 0.515932 | 7_4:-59696684 | None:intergenic |
TTGTGATGTTAATGATCAAA+GGG | 0.516121 | 7_4:+59696591 | Msa1167280:CDS |
TGGAAATAATAAGAAGAGAA+AGG | 0.518093 | 7_4:+59696474 | Msa1167280:CDS |
TTGATGCTTCAACTGGAAGA+TGG | 0.518598 | 7_4:+59694973 | Msa1167280:CDS |
ATCACAGTGTTTGTTAATGT+GGG | 0.521709 | 7_4:-59696029 | None:intergenic |
TATATTATAAGATAAGGAAA+AGG | 0.521721 | 7_4:-59694548 | None:intergenic |
TGTTTATATAATGTTAACAA+TGG | 0.527902 | 7_4:+59696550 | Msa1167280:CDS |
CCATTCTTGATGAGTACTGA+GGG | 0.532198 | 7_4:+59696685 | Msa1167280:CDS |
GGGTGTTAAGAGAAGAAGAG+TGG | 0.532295 | 7_4:+59696296 | Msa1167280:CDS |
AAGAGCTTGGATTGAAGCTA+GGG | 0.532871 | 7_4:+59696372 | Msa1167280:CDS |
TACTGAGGGAGGAAATATGT+GGG | 0.537099 | 7_4:+59696699 | Msa1167280:CDS |
TCTAAATTACCACTAAATGA+AGG | 0.538013 | 7_4:-59694924 | None:intergenic |
GTTGATGTGGGTTGCCGGCG+GGG | 0.539548 | 7_4:-59694752 | None:intergenic |
ATTGTGATGTTAATGATCAA+AGG | 0.541913 | 7_4:+59696590 | Msa1167280:CDS |
AAGAGCTAACTGAAGAAATG+AGG | 0.545636 | 7_4:+59696823 | Msa1167280:three_prime_UTR |
TGGTGGAGAAGCAAGAAGAA+TGG | 0.548730 | 7_4:+59696230 | Msa1167280:CDS |
TCTCATAGTGTTGTTGATGT+GGG | 0.555577 | 7_4:-59694764 | None:intergenic |
CTCCGCCGTAGGGAAATTGT+TGG | 0.561007 | 7_4:-59694724 | None:intergenic |
GTTAACAATGGAGATGGAGC+TGG | 0.562473 | 7_4:+59696562 | Msa1167280:CDS |
TTGTTGATGTGGGTTGCCGG+CGG | 0.563154 | 7_4:-59694754 | None:intergenic |
AGTGTAAGAGTCTCTTGTCT+AGG | 0.565795 | 7_4:-59694996 | None:intergenic |
ATGATAACAACAATGTTGAT+CGG | 0.565825 | 7_4:+59696524 | Msa1167280:CDS |
TTCACAGCTGAAGAAATTGG+TGG | 0.567445 | 7_4:+59696213 | Msa1167280:CDS |
GGGAGAGTACAAACAAATGA+TGG | 0.567681 | 7_4:+59696622 | Msa1167280:CDS |
ACAGTAACAGCAGCAACAGC+AGG | 0.567957 | 7_4:-59694858 | None:intergenic |
GCACTAGTGGTGGTGTTGGT+AGG | 0.568004 | 7_4:-59694894 | None:intergenic |
GAAAAGCAGGAAGACAAGAT+GGG | 0.570202 | 7_4:+59695888 | Msa1167280:CDS |
GCGGGGAATAGCTCCGCCGT+AGG | 0.579850 | 7_4:-59694735 | None:intergenic |
TATTCCATCAAGTGTTGTTG+GGG | 0.581444 | 7_4:+59697032 | Msa1167280:three_prime_UTR |
AGTGGTGGTGTTGGTAGGAG+TGG | 0.582934 | 7_4:-59694889 | None:intergenic |
CAAAGAGAATGAGTTCTCCA+TGG | 0.584262 | 7_4:+59696126 | Msa1167280:CDS |
ATGATCAAAGGGAAGAACTT+GGG | 0.587215 | 7_4:+59696602 | Msa1167280:CDS |
GGAGAAACTCACAAAGACAT+TGG | 0.587360 | 7_4:+59696255 | Msa1167280:CDS |
CGGGGAATAGCTCCGCCGTA+GGG | 0.588808 | 7_4:-59694734 | None:intergenic |
AACATGGCTATCAAAGGAGT+GGG | 0.590438 | 7_4:+59695807 | Msa1167280:CDS |
TGAAGCACTAGTGGTGGTGT+TGG | 0.592317 | 7_4:-59694898 | None:intergenic |
CCCATTCTTGATGAGTACTG+AGG | 0.594659 | 7_4:+59696684 | Msa1167280:CDS |
CTCAAATATTAAGACCAACA+AGG | 0.598102 | 7_4:-59694416 | None:intergenic |
GTGAAGAACATGGCTATCAA+AGG | 0.598664 | 7_4:+59695801 | Msa1167280:CDS |
AGGATAATGTGTGAAGAACA+TGG | 0.603245 | 7_4:+59695791 | Msa1167280:intron |
CGAATTCAGTGGAGTTTGTG+AGG | 0.604333 | 7_4:-59696060 | None:intergenic |
GAACATGGCTATCAAAGGAG+TGG | 0.606340 | 7_4:+59695806 | Msa1167280:CDS |
AGAGCTAACTGAAGAAATGA+GGG | 0.609109 | 7_4:+59696824 | Msa1167280:three_prime_UTR |
AAGATGTTAAGCGGCAGAGT+CGG | 0.611463 | 7_4:-59694460 | None:intergenic |
TGATGATCATAGTACTCATG+AGG | 0.611714 | 7_4:+59696099 | Msa1167280:CDS |
TCAAATATTAAGACCAACAA+GGG | 0.614018 | 7_4:-59694415 | None:intergenic |
GATGATCATAGTACTCATGA+GGG | 0.620992 | 7_4:+59696100 | Msa1167280:CDS |
TGAAGATTGAAGATGTTAAG+CGG | 0.622485 | 7_4:-59694469 | None:intergenic |
TGAAGGAGTTGAAGCACTAG+TGG | 0.623923 | 7_4:-59694907 | None:intergenic |
CGATGATGTGTCGAATTCAG+TGG | 0.625749 | 7_4:-59696071 | None:intergenic |
AACTACCAACAATTTCCCTA+CGG | 0.632466 | 7_4:+59694719 | Msa1167280:CDS |
TGTTAAGAGAAGAAGAGTGG+AGG | 0.635425 | 7_4:+59696299 | Msa1167280:CDS |
TAGTGGAAGAAGCTTCTGGA+AGG | 0.636390 | 7_4:+59696168 | Msa1167280:CDS |
CTAGAAAGTTGATCCCAAAG+AGG | 0.637397 | 7_4:-59695074 | None:intergenic |
ACGGCGGAGCTATTCCCCGC+CGG | 0.640713 | 7_4:+59694738 | Msa1167280:CDS |
GTACTGAGGGAGGAAATATG+TGG | 0.650852 | 7_4:+59696698 | Msa1167280:CDS |
TACCAACAATTTCCCTACGG+CGG | 0.660564 | 7_4:+59694722 | Msa1167280:CDS |
TTCTTGATGAGTACTGAGGG+AGG | 0.678329 | 7_4:+59696688 | Msa1167280:CDS |
ATGATCATAGTACTCATGAG+GGG | 0.712141 | 7_4:+59696101 | Msa1167280:CDS |
AGGAGTTGAAGCACTAGTGG+TGG | 0.716487 | 7_4:-59694904 | None:intergenic |
ACAAAATCATGAAGACAACG+AGG | 0.773702 | 7_4:-59694822 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATAAAGAGATAATAAAA+GGG | - | chr7_4:59695402-59695421 | None:intergenic | 10.0% |
!! | TTAAATAAAGAGATAATAAA+AGG | - | chr7_4:59695403-59695422 | None:intergenic | 10.0% |
!!! | TTTATATTTTTTTGACAAAA+TGG | - | chr7_4:59696950-59696969 | None:intergenic | 10.0% |
!! | TTGTCAAAAAAATATAAATA+TGG | + | chr7_4:59696952-59696971 | Msa1167280:three_prime_UTR | 10.0% |
!! | TATATTATAAGATAAGGAAA+AGG | - | chr7_4:59694551-59694570 | None:intergenic | 15.0% |
!! | ATTGCATATATTATAAGATA+AGG | - | chr7_4:59694557-59694576 | None:intergenic | 15.0% |
!! | TGTTTATATAATGTTAACAA+TGG | + | chr7_4:59696550-59696569 | Msa1167280:CDS | 15.0% |
!! | TGATGATATTATTACTTATT+AGG | + | chr7_4:59696865-59696884 | Msa1167280:three_prime_UTR | 15.0% |
!! | TATTACTTATTAGGTAATTA+AGG | + | chr7_4:59696874-59696893 | Msa1167280:three_prime_UTR | 15.0% |
!!! | ATCAATATTTTTATCAATCT+CGG | + | chr7_4:59696903-59696922 | Msa1167280:three_prime_UTR | 15.0% |
!!! | ATACTATTGAAATTTGAGAT+AGG | - | chr7_4:59694600-59694619 | None:intergenic | 20.0% |
!! | AAACATACCAAATAATTTGA+AGG | - | chr7_4:59695135-59695154 | None:intergenic | 20.0% |
!!! | TTTTTGTGGAATTTTTGTTA+AGG | + | chr7_4:59695248-59695267 | Msa1167280:intron | 20.0% |
!!! | TTTAAAATACACTCAACTTT+CGG | + | chr7_4:59695418-59695437 | Msa1167280:intron | 20.0% |
!!! | ATGTCATTTAAATTGTCAAT+AGG | - | chr7_4:59695574-59695593 | None:intergenic | 20.0% |
!! | AAAACAACAAAAGCTTAATT+GGG | - | chr7_4:59695733-59695752 | None:intergenic | 20.0% |
!! | AAAAACAACAAAAGCTTAAT+TGG | - | chr7_4:59695734-59695753 | None:intergenic | 20.0% |
!!! | ACAACTTTTTTTTTCTTCTA+AGG | + | chr7_4:59696777-59696796 | Msa1167280:three_prime_UTR | 20.0% |
!!! | ACAAAAAGTTAGTTTAATGA+TGG | + | chr7_4:59697002-59697021 | Msa1167280:three_prime_UTR | 20.0% |
!!! | CAAAAAGTTAGTTTAATGAT+GGG | + | chr7_4:59697003-59697022 | Msa1167280:three_prime_UTR | 20.0% |
!! | AATGATATGTAATTCATGTA+TGG | + | chr7_4:59697157-59697176 | Msa1167280:three_prime_UTR | 20.0% |
! | TCAAATATTAAGACCAACAA+GGG | - | chr7_4:59694418-59694437 | None:intergenic | 25.0% |
! | TATCATATTCCATTATCTCA+TGG | + | chr7_4:59694617-59694636 | Msa1167280:CDS | 25.0% |
!!! | TACTATCATAGTGTTGATTA+TGG | - | chr7_4:59694653-59694672 | None:intergenic | 25.0% |
! | TCTAAATTACCACTAAATGA+AGG | - | chr7_4:59694927-59694946 | None:intergenic | 25.0% |
!! | TCCTTTTCCTTCAAATTATT+TGG | + | chr7_4:59695125-59695144 | Msa1167280:intron | 25.0% |
! | ACCAAATAATTTGAAGGAAA+AGG | - | chr7_4:59695129-59695148 | None:intergenic | 25.0% |
! | TTTGTGTTAACAAAAATGAG+TGG | + | chr7_4:59695152-59695171 | Msa1167280:intron | 25.0% |
! | TAATTATTTATGCTTGCACT+TGG | + | chr7_4:59695202-59695221 | Msa1167280:intron | 25.0% |
! | CAAAAATTCCACAAAAAGTA+GGG | - | chr7_4:59695245-59695264 | None:intergenic | 25.0% |
! | ACAAAAATTCCACAAAAAGT+AGG | - | chr7_4:59695246-59695265 | None:intergenic | 25.0% |
!! | TTTTGTTAAGGTTCTTTTAC+TGG | + | chr7_4:59695260-59695279 | Msa1167280:intron | 25.0% |
! | AAAAAAGGTAGTACTAATCT+TGG | - | chr7_4:59695337-59695356 | None:intergenic | 25.0% |
! | ACAATTTCAAAAGGGAAAAA+AGG | - | chr7_4:59695352-59695371 | None:intergenic | 25.0% |
! | AATTAATATTGAACCCTAGT+TGG | - | chr7_4:59695706-59695725 | None:intergenic | 25.0% |
! | AAACAACAAAAGCTTAATTG+GGG | - | chr7_4:59695732-59695751 | None:intergenic | 25.0% |
! | ATTATTGCTTTCTCCATATA+AGG | - | chr7_4:59695945-59695964 | None:intergenic | 25.0% |
!!! | TGGTACAAAAATTGTTTTGT+GGG | - | chr7_4:59695985-59696004 | None:intergenic | 25.0% |
!!! | TTGGTACAAAAATTGTTTTG+TGG | - | chr7_4:59695986-59696005 | None:intergenic | 25.0% |
!!! | TGGAAAAAGAGCATAAATTT+TGG | + | chr7_4:59696341-59696360 | Msa1167280:CDS | 25.0% |
!!! | GGAAAAAGAGCATAAATTTT+GGG | + | chr7_4:59696342-59696361 | Msa1167280:CDS | 25.0% |
! | TGGAAATAATAAGAAGAGAA+AGG | + | chr7_4:59696474-59696493 | Msa1167280:CDS | 25.0% |
! | ATGATAACAACAATGTTGAT+CGG | + | chr7_4:59696524-59696543 | Msa1167280:CDS | 25.0% |
! | TATAATGTTAACAATGGAGA+TGG | + | chr7_4:59696556-59696575 | Msa1167280:CDS | 25.0% |
! | TTGATCATTAACATCACAAT+AGG | - | chr7_4:59696590-59696609 | None:intergenic | 25.0% |
! | ATTGTGATGTTAATGATCAA+AGG | + | chr7_4:59696590-59696609 | Msa1167280:CDS | 25.0% |
! | TTGTGATGTTAATGATCAAA+GGG | + | chr7_4:59696591-59696610 | Msa1167280:CDS | 25.0% |
! | GCAAAGCATAAATGATAATT+AGG | - | chr7_4:59697090-59697109 | None:intergenic | 25.0% |
! | TATCATTTATGCTTTGCAAA+TGG | + | chr7_4:59697093-59697112 | Msa1167280:three_prime_UTR | 25.0% |
CTCAAATATTAAGACCAACA+AGG | - | chr7_4:59694419-59694438 | None:intergenic | 30.0% | |
TGAAGATTGAAGATGTTAAG+CGG | - | chr7_4:59694472-59694491 | None:intergenic | 30.0% | |
ATTCCATTATCTCATGGAAA+TGG | + | chr7_4:59694623-59694642 | Msa1167280:CDS | 30.0% | |
!! | AAATTGTTGGTAGTTGATCT+TGG | - | chr7_4:59694714-59694733 | None:intergenic | 30.0% |
AATTTAGAAGCTGAAACTAC+TGG | + | chr7_4:59694939-59694958 | Msa1167280:CDS | 30.0% | |
TTCAAAGAAGCTACTCAAAA+AGG | + | chr7_4:59695050-59695069 | Msa1167280:CDS | 30.0% | |
!!! | AATTTTGTCCCTACTTTTTG+TGG | + | chr7_4:59695234-59695253 | Msa1167280:intron | 30.0% |
AACACTTTGCACTTAAAAGA+GGG | - | chr7_4:59695378-59695397 | None:intergenic | 30.0% | |
AAACACTTTGCACTTAAAAG+AGG | - | chr7_4:59695379-59695398 | None:intergenic | 30.0% | |
! | TTTTGTGAGCAAATTCATTG+AGG | + | chr7_4:59695457-59695476 | Msa1167280:intron | 30.0% |
TTTGTGAGCAAATTCATTGA+GGG | + | chr7_4:59695458-59695477 | Msa1167280:intron | 30.0% | |
CTAATTCTATCTGTCTAACA+TGG | + | chr7_4:59695505-59695524 | Msa1167280:intron | 30.0% | |
! | CAATAGGAATGAGTTTTTGA+AGG | - | chr7_4:59695558-59695577 | None:intergenic | 30.0% |
ACATATTACACGACAATACA+TGG | + | chr7_4:59695602-59695621 | Msa1167280:intron | 30.0% | |
AATATTCATAGCTCCAACTA+GGG | + | chr7_4:59695690-59695709 | Msa1167280:intron | 30.0% | |
AACAACAAAAGCTTAATTGG+GGG | - | chr7_4:59695731-59695750 | None:intergenic | 30.0% | |
! | CATTGCTTGTATTGATGTTA+AGG | + | chr7_4:59695771-59695790 | Msa1167280:intron | 30.0% |
CAAATACTACAAAAAGACCA+AGG | + | chr7_4:59695862-59695881 | Msa1167280:CDS | 30.0% | |
! | TTTTTGTACCAACAACAATC+AGG | + | chr7_4:59695994-59696013 | Msa1167280:CDS | 30.0% |
AAACATTTCCTGATTGTTGT+TGG | - | chr7_4:59696005-59696024 | None:intergenic | 30.0% | |
! | ATCACAGTGTTTGTTAATGT+GGG | - | chr7_4:59696032-59696051 | None:intergenic | 30.0% |
! | TATCACAGTGTTTGTTAATG+TGG | - | chr7_4:59696033-59696052 | None:intergenic | 30.0% |
GAAGCTTTGCAAAAATTAAC+AGG | + | chr7_4:59696409-59696428 | Msa1167280:CDS | 30.0% | |
ATCTCGGAGAGAAAAAAATA+TGG | + | chr7_4:59696919-59696938 | Msa1167280:three_prime_UTR | 30.0% | |
! | TGTCTTCAATTTTTCTGTTG+AGG | - | chr7_4:59696983-59697002 | None:intergenic | 30.0% |
! | TATATTCCATCAAGTGTTGT+TGG | + | chr7_4:59697030-59697049 | Msa1167280:three_prime_UTR | 30.0% |
! | ATATTCCATCAAGTGTTGTT+GGG | + | chr7_4:59697031-59697050 | Msa1167280:three_prime_UTR | 30.0% |
ATTAAGACCAACAAGGGTAA+TGG | - | chr7_4:59694412-59694431 | None:intergenic | 35.0% | |
CTTCCATTTCCATGAGATAA+TGG | - | chr7_4:59694629-59694648 | None:intergenic | 35.0% | |
AACTACCAACAATTTCCCTA+CGG | + | chr7_4:59694719-59694738 | Msa1167280:CDS | 35.0% | |
! | TCTCATAGTGTTGTTGATGT+GGG | - | chr7_4:59694767-59694786 | None:intergenic | 35.0% |
! | ATCTCATAGTGTTGTTGATG+TGG | - | chr7_4:59694768-59694787 | None:intergenic | 35.0% |
! | CACTATGAGATGATGATGTT+TGG | + | chr7_4:59694777-59694796 | Msa1167280:CDS | 35.0% |
ACAAAATCATGAAGACAACG+AGG | - | chr7_4:59694825-59694844 | None:intergenic | 35.0% | |
CTTCTTTGAATTGAGGATCA+AGG | - | chr7_4:59695040-59695059 | None:intergenic | 35.0% | |
TGAGTAGCTTCTTTGAATTG+AGG | - | chr7_4:59695047-59695066 | None:intergenic | 35.0% | |
TACTCAAAAAGGTCCTCTTT+GGG | + | chr7_4:59695061-59695080 | Msa1167280:CDS | 35.0% | |
! | GAGGGTACACAATTTCAAAA+GGG | - | chr7_4:59695360-59695379 | None:intergenic | 35.0% |
! | AGAGGGTACACAATTTCAAA+AGG | - | chr7_4:59695361-59695380 | None:intergenic | 35.0% |
TTGTGAGCAAATTCATTGAG+GGG | + | chr7_4:59695459-59695478 | Msa1167280:intron | 35.0% | |
CTAGTTGGAGCTATGAATAT+TGG | - | chr7_4:59695691-59695710 | None:intergenic | 35.0% | |
CAATATTCATAGCTCCAACT+AGG | + | chr7_4:59695689-59695708 | Msa1167280:intron | 35.0% | |
AGGATAATGTGTGAAGAACA+TGG | + | chr7_4:59695791-59695810 | Msa1167280:intron | 35.0% | |
TACTACAAAAAGACCAAGGA+AGG | + | chr7_4:59695866-59695885 | Msa1167280:CDS | 35.0% | |
TGATGATCATAGTACTCATG+AGG | + | chr7_4:59696099-59696118 | Msa1167280:CDS | 35.0% | |
GATGATCATAGTACTCATGA+GGG | + | chr7_4:59696100-59696119 | Msa1167280:CDS | 35.0% | |
ATGATCATAGTACTCATGAG+GGG | + | chr7_4:59696101-59696120 | Msa1167280:CDS | 35.0% | |
!!! | CCTCTTTTTTCTCTTATCCA+TGG | - | chr7_4:59696146-59696165 | None:intergenic | 35.0% |
CCATGGATAAGAGAAAAAAG+AGG | + | chr7_4:59696143-59696162 | Msa1167280:CDS | 35.0% | |
AAGAGAAAAAAGAGGAGTAG+TGG | + | chr7_4:59696151-59696170 | Msa1167280:CDS | 35.0% | |
TGATTCACAGCTGAAGAAAT+TGG | + | chr7_4:59696210-59696229 | Msa1167280:CDS | 35.0% | |
CACAAAGACATTGGAACAAA+AGG | + | chr7_4:59696264-59696283 | Msa1167280:CDS | 35.0% | |
TGGAACAAAAGGAAAAAGAG+AGG | + | chr7_4:59696275-59696294 | Msa1167280:CDS | 35.0% | |
GGAACAAAAGGAAAAAGAGA+GGG | + | chr7_4:59696276-59696295 | Msa1167280:CDS | 35.0% | |
GAAACAAGAGAAAGAAAGGT+TGG | + | chr7_4:59696321-59696340 | Msa1167280:CDS | 35.0% | |
ACTCAATCTTCTTCTCATGA+TGG | + | chr7_4:59696454-59696473 | Msa1167280:CDS | 35.0% | |
AATGATCAAAGGGAAGAACT+TGG | + | chr7_4:59696601-59696620 | Msa1167280:CDS | 35.0% | |
ATGATCAAAGGGAAGAACTT+GGG | + | chr7_4:59696602-59696621 | Msa1167280:CDS | 35.0% | |
!!! | AAACTTCAACTCACTGGTTT+TGG | - | chr7_4:59696756-59696775 | None:intergenic | 35.0% |
AAGAGCTAACTGAAGAAATG+AGG | + | chr7_4:59696823-59696842 | Msa1167280:three_prime_UTR | 35.0% | |
AGAGCTAACTGAAGAAATGA+GGG | + | chr7_4:59696824-59696843 | Msa1167280:three_prime_UTR | 35.0% | |
! | TATTCCATCAAGTGTTGTTG+GGG | + | chr7_4:59697032-59697051 | Msa1167280:three_prime_UTR | 35.0% |
TTATGCTTTGCAAATGGATC+TGG | + | chr7_4:59697099-59697118 | Msa1167280:three_prime_UTR | 35.0% | |
! | TGAGTCTTTTCATTGACGAC+AGG | + | chr7_4:59694435-59694454 | Msa1167280:five_prime_UTR | 40.0% |
GCTTCAACTCCTTCATTTAG+TGG | + | chr7_4:59694915-59694934 | Msa1167280:CDS | 40.0% | |
!! | GCTGAAACTACTGGTTTCAT+TGG | + | chr7_4:59694948-59694967 | Msa1167280:CDS | 40.0% |
TTGATGCTTCAACTGGAAGA+TGG | + | chr7_4:59694973-59694992 | Msa1167280:CDS | 40.0% | |
AGTGTAAGAGTCTCTTGTCT+AGG | - | chr7_4:59694999-59695018 | None:intergenic | 40.0% | |
CTACTCAAAAAGGTCCTCTT+TGG | + | chr7_4:59695060-59695079 | Msa1167280:CDS | 40.0% | |
! | CTAGAAAGTTGATCCCAAAG+AGG | - | chr7_4:59695077-59695096 | None:intergenic | 40.0% |
!! | CTCTTTGGGATCAACTTTCT+AGG | + | chr7_4:59695075-59695094 | Msa1167280:CDS | 40.0% |
TTGGGATCAACTTTCTAGGT+AGG | + | chr7_4:59695079-59695098 | Msa1167280:intron | 40.0% | |
TGTGAGCAAATTCATTGAGG+GGG | + | chr7_4:59695460-59695479 | Msa1167280:intron | 40.0% | |
! | AAATTCATTGAGGGGGTACA+AGG | + | chr7_4:59695467-59695486 | Msa1167280:intron | 40.0% |
! | AATTCATTGAGGGGGTACAA+GGG | + | chr7_4:59695468-59695487 | Msa1167280:intron | 40.0% |
AGGAAGAGTCTGTGATTGAT+TGG | - | chr7_4:59695538-59695557 | None:intergenic | 40.0% | |
!! | GTACGTAGCATGTGTTACTT+TGG | + | chr7_4:59695660-59695679 | Msa1167280:intron | 40.0% |
GTGAAGAACATGGCTATCAA+AGG | + | chr7_4:59695801-59695820 | Msa1167280:CDS | 40.0% | |
AACATGGCTATCAAAGGAGT+GGG | + | chr7_4:59695807-59695826 | Msa1167280:CDS | 40.0% | |
AAAGGAGTGGGAAAAAATGC+AGG | + | chr7_4:59695819-59695838 | Msa1167280:CDS | 40.0% | |
AAGGAGTGGGAAAAAATGCA+GGG | + | chr7_4:59695820-59695839 | Msa1167280:CDS | 40.0% | |
GAAAAGCAGGAAGACAAGAT+GGG | + | chr7_4:59695888-59695907 | Msa1167280:CDS | 40.0% | |
! | CGACAACTTGAAGCCTTATA+TGG | + | chr7_4:59695929-59695948 | Msa1167280:CDS | 40.0% |
CAAAGAGAATGAGTTCTCCA+TGG | + | chr7_4:59696126-59696145 | Msa1167280:CDS | 40.0% | |
TTCACAGCTGAAGAAATTGG+TGG | + | chr7_4:59696213-59696232 | Msa1167280:CDS | 40.0% | |
GGAGAAACTCACAAAGACAT+TGG | + | chr7_4:59696255-59696274 | Msa1167280:CDS | 40.0% | |
TGTTAAGAGAAGAAGAGTGG+AGG | + | chr7_4:59696299-59696318 | Msa1167280:CDS | 40.0% | |
GGAGGAAACAAGAGAAAGAA+AGG | + | chr7_4:59696317-59696336 | Msa1167280:CDS | 40.0% | |
TTTGGGCTAAAGAAAGAGCT+TGG | + | chr7_4:59696359-59696378 | Msa1167280:CDS | 40.0% | |
AAAGAGCTTGGATTGAAGCT+AGG | + | chr7_4:59696371-59696390 | Msa1167280:CDS | 40.0% | |
AAGAGCTTGGATTGAAGCTA+GGG | + | chr7_4:59696372-59696391 | Msa1167280:CDS | 40.0% | |
! | GGGAGAGTACAAACAAATGA+TGG | + | chr7_4:59696622-59696641 | Msa1167280:CDS | 40.0% |
CCTCAGTACTCATCAAGAAT+GGG | - | chr7_4:59696687-59696706 | None:intergenic | 40.0% | |
!! | CCATTCTTGATGAGTACTGA+GGG | + | chr7_4:59696685-59696704 | Msa1167280:CDS | 40.0% |
TACTGAGGGAGGAAATATGT+GGG | + | chr7_4:59696699-59696718 | Msa1167280:CDS | 40.0% | |
GTGGGAGAATTACAACTTGA+AGG | + | chr7_4:59696717-59696736 | Msa1167280:CDS | 40.0% | |
GTTGTGAAACTTCAACTCAC+TGG | - | chr7_4:59696762-59696781 | None:intergenic | 40.0% | |
TTGGGGTATGACACTAATTC+AGG | + | chr7_4:59697049-59697068 | Msa1167280:three_prime_UTR | 40.0% | |
AAGATGTTAAGCGGCAGAGT+CGG | - | chr7_4:59694463-59694482 | None:intergenic | 45.0% | |
TACCAACAATTTCCCTACGG+CGG | + | chr7_4:59694722-59694741 | Msa1167280:CDS | 45.0% | |
! | TGAAGGAGTTGAAGCACTAG+TGG | - | chr7_4:59694910-59694929 | None:intergenic | 45.0% |
!! | ATTGGCGTTGATGCTTCAAC+TGG | + | chr7_4:59694966-59694985 | Msa1167280:CDS | 45.0% |
GAACATGGCTATCAAAGGAG+TGG | + | chr7_4:59695806-59695825 | Msa1167280:CDS | 45.0% | |
AAGACCAAGGAAGGAAAAGC+AGG | + | chr7_4:59695875-59695894 | Msa1167280:CDS | 45.0% | |
!! | TCTTCCTGCTTTTCCTTCCT+TGG | - | chr7_4:59695882-59695901 | None:intergenic | 45.0% |
GGAAAAGCAGGAAGACAAGA+TGG | + | chr7_4:59695887-59695906 | Msa1167280:CDS | 45.0% | |
TGTGGGAGTGAAGATGAAGA+AGG | - | chr7_4:59695968-59695987 | None:intergenic | 45.0% | |
CGAATTCAGTGGAGTTTGTG+AGG | - | chr7_4:59696063-59696082 | None:intergenic | 45.0% | |
CGATGATGTGTCGAATTCAG+TGG | - | chr7_4:59696074-59696093 | None:intergenic | 45.0% | |
TAGTGGAAGAAGCTTCTGGA+AGG | + | chr7_4:59696168-59696187 | Msa1167280:CDS | 45.0% | |
TGGTGGAGAAGCAAGAAGAA+TGG | + | chr7_4:59696230-59696249 | Msa1167280:CDS | 45.0% | |
GGAGAAGCAAGAAGAATGGT+TGG | + | chr7_4:59696234-59696253 | Msa1167280:CDS | 45.0% | |
GGGTGTTAAGAGAAGAAGAG+TGG | + | chr7_4:59696296-59696315 | Msa1167280:CDS | 45.0% | |
!! | AGCTAGGGATGCTGCTTTAA+TGG | + | chr7_4:59696387-59696406 | Msa1167280:CDS | 45.0% |
GTTAACAATGGAGATGGAGC+TGG | + | chr7_4:59696562-59696581 | Msa1167280:CDS | 45.0% | |
! | CCCATTCTTGATGAGTACTG+AGG | + | chr7_4:59696684-59696703 | Msa1167280:CDS | 45.0% |
CCCTCAGTACTCATCAAGAA+TGG | - | chr7_4:59696688-59696707 | None:intergenic | 45.0% | |
!! | TTCTTGATGAGTACTGAGGG+AGG | + | chr7_4:59696688-59696707 | Msa1167280:CDS | 45.0% |
GTACTGAGGGAGGAAATATG+TGG | + | chr7_4:59696698-59696717 | Msa1167280:CDS | 45.0% | |
CATACCCCAACAACACTTGA+TGG | - | chr7_4:59697039-59697058 | None:intergenic | 45.0% | |
! | GTGTTGTTGATGTGGGTTGC+CGG | - | chr7_4:59694760-59694779 | None:intergenic | 50.0% |
ACAGTAACAGCAGCAACAGC+AGG | - | chr7_4:59694861-59694880 | None:intergenic | 50.0% | |
! | TGAAGCACTAGTGGTGGTGT+TGG | - | chr7_4:59694901-59694920 | None:intergenic | 50.0% |
! | AGGAGTTGAAGCACTAGTGG+TGG | - | chr7_4:59694907-59694926 | None:intergenic | 50.0% |
! | GGAGTAGTGGAAGAAGCTTC+TGG | + | chr7_4:59696164-59696183 | Msa1167280:CDS | 50.0% |
CTCCGCCGTAGGGAAATTGT+TGG | - | chr7_4:59694727-59694746 | None:intergenic | 55.0% | |
! | TTGTTGATGTGGGTTGCCGG+CGG | - | chr7_4:59694757-59694776 | None:intergenic | 55.0% |
!! | AGTGGTGGTGTTGGTAGGAG+TGG | - | chr7_4:59694892-59694911 | None:intergenic | 55.0% |
!! | GCACTAGTGGTGGTGTTGGT+AGG | - | chr7_4:59694897-59694916 | None:intergenic | 55.0% |
! | TGTTGATGTGGGTTGCCGGC+GGG | - | chr7_4:59694756-59694775 | None:intergenic | 60.0% |
CGGGGAATAGCTCCGCCGTA+GGG | - | chr7_4:59694737-59694756 | None:intergenic | 65.0% | |
! | GTTGATGTGGGTTGCCGGCG+GGG | - | chr7_4:59694755-59694774 | None:intergenic | 65.0% |
GCGGGGAATAGCTCCGCCGT+AGG | - | chr7_4:59694738-59694757 | None:intergenic | 70.0% | |
ACGGCGGAGCTATTCCCCGC+CGG | + | chr7_4:59694738-59694757 | Msa1167280:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 59694404 | 59697197 | 59694404 | ID=Msa1167280;Name=Msa1167280 |
chr7_4 | mRNA | 59694404 | 59697197 | 59694404 | ID=Msa1167280-mRNA-1;Parent=Msa1167280;Name=Msa1167280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166|1|1|1|1|1|2|432|499 |
chr7_4 | exon | 59694404 | 59695096 | 59694404 | ID=Msa1167280-mRNA-1:exon:18543;Parent=Msa1167280-mRNA-1 |
chr7_4 | exon | 59695793 | 59697197 | 59695793 | ID=Msa1167280-mRNA-1:exon:18544;Parent=Msa1167280-mRNA-1 |
chr7_4 | five_prime_UTR | 59694404 | 59694569 | 59694404 | ID=Msa1167280-mRNA-1:five_prime_utr;Parent=Msa1167280-mRNA-1 |
chr7_4 | CDS | 59694570 | 59695096 | 59694570 | ID=Msa1167280-mRNA-1:cds;Parent=Msa1167280-mRNA-1 |
chr7_4 | CDS | 59695793 | 59696765 | 59695793 | ID=Msa1167280-mRNA-1:cds;Parent=Msa1167280-mRNA-1 |
chr7_4 | three_prime_UTR | 59696766 | 59697197 | 59696766 | ID=Msa1167280-mRNA-1:three_prime_utr;Parent=Msa1167280-mRNA-1 |
Gene Sequence |
Protein sequence |