AlfalfaGEDB | Msa1080240

M. sativa cultivar zhongmu-4 / Msa1080240

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080240	XP_039684219.1	95.625	480	13	3	23	499	1	475	0.0	956

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080240	sp\|Q9LZS0\|PTL_ARATH	45.972	422	165	12	23	409	1	394	3.94e-93	298

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080240	A0A396H5V1	95.625	480	13	3	23	499	1	475	0.0	956

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TFs/TRs:

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Gene ID	Type	Classification
Msa1080240	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa1080240	0.801530	8.622403e-49	-8.615850e-47
Msa0017510	Msa1080240	0.827813	1.271355e-54	-8.615850e-47
Msa0072370	Msa1080240	0.810558	1.085876e-50	-8.615850e-47
Msa0110970	Msa1080240	0.835487	1.631164e-56	-8.615850e-47
Msa0157290	Msa1080240	0.828194	1.029284e-54	-8.615850e-47
Msa0197930	Msa1080240	0.803723	3.042611e-49	-8.615850e-47
Msa0239570	Msa1080240	0.809325	2.000637e-50	-8.615850e-47
Msa0317280	Msa1080240	0.830203	3.352180e-55	-8.615850e-47
Msa0392420	Msa1080240	0.805692	1.180628e-49	-8.615850e-47
Msa0392460	Msa1080240	0.805077	1.588357e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080240	MtrunA17_Chr7g0265831	95.625	480	13	3	23	499	1	475	0.0	956
Msa1080240	MtrunA17_Chr1g0179191	52.290	524	146	17	39	498	27	510	2.99e-153	446
Msa1080240	MtrunA17_Chr1g0198171	38.161	435	209	16	39	435	10	422	1.81e-79	256
Msa1080240	MtrunA17_Chr1g0201941	37.209	301	134	4	141	387	57	356	9.08e-49	177
Msa1080240	MtrunA17_Chr1g0201941	43.000	100	54	3	132	230	446	543	5.77e-18	87.0
Msa1080240	MtrunA17_Chr1g0201911	35.556	270	143	4	141	389	55	314	4.27e-39	149
Msa1080240	MtrunA17_Chr1g0201911	41.732	127	62	4	130	255	361	476	3.43e-20	94.0
Msa1080240	MtrunA17_Chr6g0463941	64.423	104	31	3	134	235	46	145	2.25e-34	137
Msa1080240	MtrunA17_Chr6g0463941	44.330	97	52	2	137	232	460	555	3.93e-19	90.9
Msa1080240	MtrunA17_Chr1g0190851	26.648	349	199	12	48	388	29	328	6.70e-16	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080240	AT5G03680.1	45.972	422	165	12	23	409	1	394	4.01e-94	298
Msa1080240	AT3G10000.1	39.872	469	223	11	69	499	34	481	8.11e-92	288
Msa1080240	AT3G10000.2	38.166	469	221	12	69	499	34	471	5.71e-82	262
Msa1080240	AT1G76890.2	34.727	311	141	7	134	388	34	338	3.91e-41	155
Msa1080240	AT1G76890.2	39.437	142	73	3	134	274	390	519	2.87e-20	94.4
Msa1080240	AT1G76880.1	55.856	111	43	2	121	231	46	150	1.37e-30	125
Msa1080240	AT1G76880.1	43.000	100	55	2	134	232	401	499	1.81e-17	85.9
Msa1080240	AT1G33240.3	60.606	99	35	2	141	239	62	156	4.77e-30	124
Msa1080240	AT1G33240.3	43.820	89	48	2	141	228	435	522	2.73e-16	82.0
Msa1080240	AT1G33240.1	60.606	99	35	2	141	239	62	156	6.22e-30	124

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Find 115 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCCTGATTGTTGT+TGG	0.473343	7_2:-79623452	None:intergenic
AAACTTCAACTCACTGGTTT+TGG	0.276459	7_2:-79624203	None:intergenic
AAAGAGCTTGGATTGAAGCT+AGG	0.477669	7_2:+79623821	Msa1080240:CDS
AAATTGTTGGTAGTTGATCT+TGG	0.391857	7_2:-79622161	None:intergenic
AACATGGCTATCAAAGGAGT+GGG	0.590438	7_2:+79623257	Msa1080240:CDS
AACTACCAACAATTTCCCTA+CGG	0.632466	7_2:+79622169	Msa1080240:CDS
AAGACCAAGGAAGGAAAAGC+AGG	0.489921	7_2:+79623325	Msa1080240:CDS
AAGAGCTAACTGAAGAAATG+AGG	0.545636	7_2:+79624273	Msa1080240:three_prime_UTR
AAGAGCTTGGATTGAAGCTA+GGG	0.532871	7_2:+79623822	Msa1080240:CDS
AAGATGTTAAGCGGCAGAGT+CGG	0.611463	7_2:-79621910	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCAAATATTAAGACCAACA+AGG	-	chr7_2:79621869-79621888	None:intergenic	30.0%
TGAAGATTGAAGATGTTAAG+CGG	-	chr7_2:79621922-79621941	None:intergenic	30.0%
ATTCCATTATCTCATGGAAA+TGG	+	chr7_2:79622073-79622092	Msa1080240:CDS	30.0%
AATTTAGAAGCTGAAACTAC+TGG	+	chr7_2:79622389-79622408	Msa1080240:CDS	30.0%
TTCAAAGAAGCTACTCAAAA+AGG	+	chr7_2:79622500-79622519	Msa1080240:CDS	30.0%
AACACTTTGCACTTAAAAGA+GGG	-	chr7_2:79622828-79622847	None:intergenic	30.0%
AAACACTTTGCACTTAAAAG+AGG	-	chr7_2:79622829-79622848	None:intergenic	30.0%
TTTGTGAGCAAATTCATTGA+GGG	+	chr7_2:79622908-79622927	Msa1080240:intron	30.0%
CTAATTCTATCTGTCTAACA+TGG	+	chr7_2:79622955-79622974	Msa1080240:intron	30.0%
ACATATTACACGACAATACA+TGG	+	chr7_2:79623052-79623071	Msa1080240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	79621854	79624647	79621854	ID=Msa1080240;Name=Msa1080240
chr7_2	mRNA	79621854	79624647	79621854	ID=Msa1080240-mRNA-1;Parent=Msa1080240;Name=Msa1080240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166\|1\|1\|1\|1\|1\|2\|432\|499
chr7_2	exon	79621854	79622546	79621854	ID=Msa1080240-mRNA-1:exon:20035;Parent=Msa1080240-mRNA-1
chr7_2	exon	79623243	79624647	79623243	ID=Msa1080240-mRNA-1:exon:20036;Parent=Msa1080240-mRNA-1
chr7_2	five_prime_UTR	79621854	79622019	79621854	ID=Msa1080240-mRNA-1:five_prime_utr;Parent=Msa1080240-mRNA-1
chr7_2	CDS	79622020	79622546	79622020	ID=Msa1080240-mRNA-1:cds;Parent=Msa1080240-mRNA-1
chr7_2	CDS	79623243	79624215	79623243	ID=Msa1080240-mRNA-1:cds;Parent=Msa1080240-mRNA-1
chr7_2	three_prime_UTR	79624216	79624647	79624216	ID=Msa1080240-mRNA-1:three_prime_utr;Parent=Msa1080240-mRNA-1

Gene Sequence

>Msa1080240

ATGCAATATCTCTTTCACTCTTCTATTCCTATCTCAAATTTCAATAGTATCATATTCCATTATCTCATGGAAATGGAAGACCATAATCAACACTATGATAGTAATAGTATCACTGATCTCAGACAACTCATTAATATTGTTCCAAGATCAACTACCAACAATTTCCCTACGGCGGAGCTATTCCCCGCCGGCAACCCACATCAACAACACTATGAGATGATGATGTTTGGTAGACAAGTAGCAGATATAATGCCTCGTTGTCTTCATGATTTTGTTTCAACAGATTCACCTGCTGTTGCTGCTGTTACTGTTGCTACTGCCACTCCTACCAACACCACCACTAGTGCTTCAACTCCTTCATTTAGTGGTAATTTAGAAGCTGAAACTACTGGTTTCATTGGCGTTGATGCTTCAACTGGAAGATGGCCTAGACAAGAGACTCTTACACTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAAGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGCTATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAGACCAAGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAGCAATAATCCTTCTTCATCTTCACTCCCACAAAACAATTTTTGTACCAACAACAATCAGGAAATGTTTCATTCCCACATTAACAAACACTGTGATAGTCTCAGCCTCACAAACTCCACTGAATTCGACACATCATCGTCAGATGATGATCATAGTACTCATGAGGGGATCAAAGAGAATGAGTTCTCCATGGATAAGAGAAAAAAGAGGAGTAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAGCTGAAGAAATTGGTGGAGAAGCAAGAAGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAAGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGAAAGAAAGGTTGGAAAAAGAGCATAAATTTTGGGCTAAAGAAAGAGCTTGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAAAAATTAACAGGTAATAATGATGAGATAATAAAGACTCAATCTTCTTCTCATGATGGAAATAATAAGAAGAGAAAGGAAAACACAAGAAGTTGTTTTTACTTTGATGATAACAACAATGTTGATCGGTCTTGTTTATATAATGTTAACAATGGAGATGGAGCTGGTTCCTATTGTGATGTTAATGATCAAAGGGAAGAACTTGGGAGAGTACAAACAAATGATGGTTCAAATTCTAATAATGTTGTTGCAGCTGAAAGTTGTTTCCCATTCTTGATGAGTACTGAGGGAGGAAATATGTGGGAGAATTACAACTTGAAGGTTAACAAAGCAAACCAAAACCAGTGA

Protein sequence

>Msa1080240

MQYLFHSSIPISNFNSIIFHYLMEMEDHNQHYDSNSITDLRQLINIVPRSTTNNFPTAELFPAGNPHQQHYEMMMFGRQVADIMPRCLHDFVSTDSPAVAAVTVATATPTNTTTSASTPSFSGNLEAETTGFIGVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGESNNPSSSSLPQNNFCTNNNQEMFHSHINKHCDSLSLTNSTEFDTSSSDDDHSTHEGIKENEFSMDKRKKRSSGRSFWKVKIKDFIDSQLKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALQKLTGNNDEIIKTQSSSHDGNNKKRKENTRSCFYFDDNNNVDRSCLYNVNNGDGAGSYCDVNDQREELGRVQTNDGSNSNNVVAAESCFPFLMSTEGGNMWENYNLKVNKANQNQ*