AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080240 MtrunA17_Chr7g0265831 95.625 480 13 3 23 499 1 475 0.0 956
Msa1080240 MtrunA17_Chr1g0179191 52.290 524 146 17 39 498 27 510 2.99e-153 446
Msa1080240 MtrunA17_Chr1g0198171 38.161 435 209 16 39 435 10 422 1.81e-79 256
Msa1080240 MtrunA17_Chr1g0201941 37.209 301 134 4 141 387 57 356 9.08e-49 177
Msa1080240 MtrunA17_Chr1g0201941 43.000 100 54 3 132 230 446 543 5.77e-18 87.0
Msa1080240 MtrunA17_Chr1g0201911 35.556 270 143 4 141 389 55 314 4.27e-39 149
Msa1080240 MtrunA17_Chr1g0201911 41.732 127 62 4 130 255 361 476 3.43e-20 94.0
Msa1080240 MtrunA17_Chr6g0463941 64.423 104 31 3 134 235 46 145 2.25e-34 137
Msa1080240 MtrunA17_Chr6g0463941 44.330 97 52 2 137 232 460 555 3.93e-19 90.9
Msa1080240 MtrunA17_Chr1g0190851 26.648 349 199 12 48 388 29 328 6.70e-16 80.5
Msa1080240 MtrunA17_Chr1g0190851 37.634 93 54 3 141 230 418 509 1.86e-11 66.2
Msa1080240 MtrunA17_Chr7g0273941 33.588 131 65 4 110 230 361 479 2.56e-14 75.1
Msa1080240 MtrunA17_Chr2g0290511 32.812 128 82 3 104 228 223 349 1.99e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080240 AT5G03680.1 45.972 422 165 12 23 409 1 394 4.01e-94 298
Msa1080240 AT3G10000.1 39.872 469 223 11 69 499 34 481 8.11e-92 288
Msa1080240 AT3G10000.2 38.166 469 221 12 69 499 34 471 5.71e-82 262
Msa1080240 AT1G76890.2 34.727 311 141 7 134 388 34 338 3.91e-41 155
Msa1080240 AT1G76890.2 39.437 142 73 3 134 274 390 519 2.87e-20 94.4
Msa1080240 AT1G76880.1 55.856 111 43 2 121 231 46 150 1.37e-30 125
Msa1080240 AT1G76880.1 43.000 100 55 2 134 232 401 499 1.81e-17 85.9
Msa1080240 AT1G33240.3 60.606 99 35 2 141 239 62 156 4.77e-30 124
Msa1080240 AT1G33240.3 43.820 89 48 2 141 228 435 522 2.73e-16 82.0
Msa1080240 AT1G33240.1 60.606 99 35 2 141 239 62 156 6.22e-30 124
Msa1080240 AT1G33240.1 43.820 89 48 2 141 228 435 522 2.42e-16 82.4
Msa1080240 AT1G33240.2 43.820 89 48 2 141 228 396 483 2.49e-16 82.4
Msa1080240 AT1G33240.2 64.407 59 18 1 181 239 62 117 2.72e-15 79.0
Msa1080240 AT5G28300.1 38.614 101 50 4 141 230 459 558 1.74e-12 70.1
Msa1080240 AT5G47660.1 41.758 91 45 4 141 228 303 388 1.37e-11 66.6

Find 115 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATATTATTACTTATT+AGG 0.192936 7_2:+79624315 Msa1080240:three_prime_UTR
GCAAAGCATAAATGATAATT+AGG 0.220249 7_2:-79624537 None:intergenic
AGCTAGGGATGCTGCTTTAA+TGG 0.226192 7_2:+79623837 Msa1080240:CDS
ATTATTGCTTTCTCCATATA+AGG 0.243458 7_2:-79623392 None:intergenic
CGTCAACTTGAAGCCTTATA+TGG 0.244935 7_2:+79623379 Msa1080240:CDS
TATTACTTATTAGGTAATTA+AGG 0.265081 7_2:+79624324 Msa1080240:three_prime_UTR
AAACTTCAACTCACTGGTTT+TGG 0.276459 7_2:-79624203 None:intergenic
CTTCCATTTCCATGAGATAA+TGG 0.307022 7_2:-79622076 None:intergenic
TACTATCATAGTGTTGATTA+TGG 0.322614 7_2:-79622100 None:intergenic
TGATTCACAGCTGAAGAAAT+TGG 0.325251 7_2:+79623660 Msa1080240:CDS
TTGGGGTATGACACTAATTC+AGG 0.332866 7_2:+79624499 Msa1080240:three_prime_UTR
CTCTTTGGGATCAACTTTCT+AGG 0.339621 7_2:+79622525 Msa1080240:CDS
GCTTCAACTCCTTCATTTAG+TGG 0.343719 7_2:+79622365 Msa1080240:CDS
TTCAAAGAAGCTACTCAAAA+AGG 0.354316 7_2:+79622500 Msa1080240:CDS
GGAGTAGTGGAAGAAGCTTC+TGG 0.362256 7_2:+79623614 Msa1080240:CDS
TTGATCATTAACATCACAAT+AGG 0.364480 7_2:-79624037 None:intergenic
TTATGCTTTGCAAATGGATC+TGG 0.367317 7_2:+79624549 Msa1080240:three_prime_UTR
CATACCCCAACAACACTTGA+TGG 0.388209 7_2:-79624486 None:intergenic
AAATTGTTGGTAGTTGATCT+TGG 0.391857 7_2:-79622161 None:intergenic
CACAAAGACATTGGAACAAA+AGG 0.401812 7_2:+79623714 Msa1080240:CDS
GTGTTGTTGATGTGGGTTGC+CGG 0.402706 7_2:-79622207 None:intergenic
ATTCCATTATCTCATGGAAA+TGG 0.406779 7_2:+79622073 Msa1080240:CDS
ATATTCCATCAAGTGTTGTT+GGG 0.413234 7_2:+79624481 Msa1080240:three_prime_UTR
ATACTATTGAAATTTGAGAT+AGG 0.414627 7_2:-79622047 None:intergenic
TGTTGATGTGGGTTGCCGGC+GGG 0.415527 7_2:-79622203 None:intergenic
AATGATATGTAATTCATGTA+TGG 0.419239 7_2:+79624607 Msa1080240:three_prime_UTR
TATCATTTATGCTTTGCAAA+TGG 0.427237 7_2:+79624543 Msa1080240:three_prime_UTR
GAAACAAGAGAAAGAAAGGT+TGG 0.430312 7_2:+79623771 Msa1080240:CDS
CCCTCAGTACTCATCAAGAA+TGG 0.434497 7_2:-79624135 None:intergenic
TGTGGGAGTGAAGATGAAGA+AGG 0.446001 7_2:-79623415 None:intergenic
GGAGGAAACAAGAGAAAGAA+AGG 0.446373 7_2:+79623767 Msa1080240:CDS
ATTGGCGTTGATGCTTCAAC+TGG 0.446616 7_2:+79622416 Msa1080240:CDS
GCTGAAACTACTGGTTTCAT+TGG 0.450069 7_2:+79622398 Msa1080240:CDS
TTTGGGCTAAAGAAAGAGCT+TGG 0.456386 7_2:+79623809 Msa1080240:CDS
ATGGGGACCATTACCCTTGT+TGG 0.461250 7_2:+79621852 None:intergenic
AAACATTTCCTGATTGTTGT+TGG 0.473343 7_2:-79623452 None:intergenic
GGAGAAGCAAGAAGAATGGT+TGG 0.477059 7_2:+79623684 Msa1080240:CDS
AAAGAGCTTGGATTGAAGCT+AGG 0.477669 7_2:+79623821 Msa1080240:CDS
TATATTCCATCAAGTGTTGT+TGG 0.481226 7_2:+79624480 Msa1080240:three_prime_UTR
TATCACAGTGTTTGTTAATG+TGG 0.481655 7_2:-79623480 None:intergenic
GGAAAAGCAGGAAGACAAGA+TGG 0.483853 7_2:+79623337 Msa1080240:CDS
GTGGGAGAATTACAACTTGA+AGG 0.483975 7_2:+79624167 Msa1080240:CDS
GTTGTGAAACTTCAACTCAC+TGG 0.485337 7_2:-79624209 None:intergenic
ATTAAGACCAACAAGGGTAA+TGG 0.488890 7_2:-79621859 None:intergenic
AAGACCAAGGAAGGAAAAGC+AGG 0.489921 7_2:+79623325 Msa1080240:CDS
ATTGCATATATTATAAGATA+AGG 0.492375 7_2:-79622004 None:intergenic
TGAGTAGCTTCTTTGAATTG+AGG 0.494836 7_2:-79622494 None:intergenic
ATCTCATAGTGTTGTTGATG+TGG 0.498646 7_2:-79622215 None:intergenic
TATAATGTTAACAATGGAGA+TGG 0.503073 7_2:+79624006 Msa1080240:CDS
AATGATCAAAGGGAAGAACT+TGG 0.504968 7_2:+79624051 Msa1080240:CDS
ACTCAATCTTCTTCTCATGA+TGG 0.508615 7_2:+79623904 Msa1080240:CDS
AATTTAGAAGCTGAAACTAC+TGG 0.509455 7_2:+79622389 Msa1080240:CDS
CACTATGAGATGATGATGTT+TGG 0.510125 7_2:+79622227 Msa1080240:CDS
TATCATATTCCATTATCTCA+TGG 0.512431 7_2:+79622067 Msa1080240:CDS
CCTCAGTACTCATCAAGAAT+GGG 0.515932 7_2:-79624134 None:intergenic
TTGTGATGTTAATGATCAAA+GGG 0.516121 7_2:+79624041 Msa1080240:CDS
TGGAAATAATAAGAAGAGAA+AGG 0.518093 7_2:+79623924 Msa1080240:CDS
TTGATGCTTCAACTGGAAGA+TGG 0.518598 7_2:+79622423 Msa1080240:CDS
ATCACAGTGTTTGTTAATGT+GGG 0.521709 7_2:-79623479 None:intergenic
TATATTATAAGATAAGGAAA+AGG 0.521721 7_2:-79621998 None:intergenic
TGTTTATATAATGTTAACAA+TGG 0.527902 7_2:+79624000 Msa1080240:CDS
CCATTCTTGATGAGTACTGA+GGG 0.532198 7_2:+79624135 Msa1080240:CDS
GGGTGTTAAGAGAAGAAGAG+TGG 0.532295 7_2:+79623746 Msa1080240:CDS
AAGAGCTTGGATTGAAGCTA+GGG 0.532871 7_2:+79623822 Msa1080240:CDS
TACTGAGGGAGGAAATATGT+GGG 0.537099 7_2:+79624149 Msa1080240:CDS
TCTAAATTACCACTAAATGA+AGG 0.538013 7_2:-79622374 None:intergenic
GTTGATGTGGGTTGCCGGCG+GGG 0.539548 7_2:-79622202 None:intergenic
ATTGTGATGTTAATGATCAA+AGG 0.541913 7_2:+79624040 Msa1080240:CDS
AAGAGCTAACTGAAGAAATG+AGG 0.545636 7_2:+79624273 Msa1080240:three_prime_UTR
TGGTGGAGAAGCAAGAAGAA+TGG 0.548730 7_2:+79623680 Msa1080240:CDS
TCTCATAGTGTTGTTGATGT+GGG 0.555577 7_2:-79622214 None:intergenic
CTCCGCCGTAGGGAAATTGT+TGG 0.561007 7_2:-79622174 None:intergenic
GTTAACAATGGAGATGGAGC+TGG 0.562473 7_2:+79624012 Msa1080240:CDS
TTGTTGATGTGGGTTGCCGG+CGG 0.563154 7_2:-79622204 None:intergenic
AGTGTAAGAGTCTCTTGTCT+AGG 0.565795 7_2:-79622446 None:intergenic
ATGATAACAACAATGTTGAT+CGG 0.565825 7_2:+79623974 Msa1080240:CDS
TTCACAGCTGAAGAAATTGG+TGG 0.567445 7_2:+79623663 Msa1080240:CDS
GGGAGAGTACAAACAAATGA+TGG 0.567681 7_2:+79624072 Msa1080240:CDS
ACAGTAACAGCAGCAACAGC+AGG 0.567957 7_2:-79622308 None:intergenic
GCACTAGTGGTGGTGTTGGT+AGG 0.568004 7_2:-79622344 None:intergenic
GAAAAGCAGGAAGACAAGAT+GGG 0.570202 7_2:+79623338 Msa1080240:CDS
GCGGGGAATAGCTCCGCCGT+AGG 0.579850 7_2:-79622185 None:intergenic
TATTCCATCAAGTGTTGTTG+GGG 0.581444 7_2:+79624482 Msa1080240:three_prime_UTR
AGTGGTGGTGTTGGTAGGAG+TGG 0.582934 7_2:-79622339 None:intergenic
CAAAGAGAATGAGTTCTCCA+TGG 0.584262 7_2:+79623576 Msa1080240:CDS
ATGATCAAAGGGAAGAACTT+GGG 0.587215 7_2:+79624052 Msa1080240:CDS
GGAGAAACTCACAAAGACAT+TGG 0.587360 7_2:+79623705 Msa1080240:CDS
CGGGGAATAGCTCCGCCGTA+GGG 0.588808 7_2:-79622184 None:intergenic
AACATGGCTATCAAAGGAGT+GGG 0.590438 7_2:+79623257 Msa1080240:CDS
TGAAGCACTAGTGGTGGTGT+TGG 0.592317 7_2:-79622348 None:intergenic
CCCATTCTTGATGAGTACTG+AGG 0.594659 7_2:+79624134 Msa1080240:CDS
CTCAAATATTAAGACCAACA+AGG 0.598102 7_2:-79621866 None:intergenic
GTGAAGAACATGGCTATCAA+AGG 0.598664 7_2:+79623251 Msa1080240:CDS
AGGATAATGTGTGAAGAACA+TGG 0.603245 7_2:+79623241 Msa1080240:intron
CGAATTCAGTGGAGTTTGTG+AGG 0.604333 7_2:-79623510 None:intergenic
GAACATGGCTATCAAAGGAG+TGG 0.606340 7_2:+79623256 Msa1080240:CDS
AGAGCTAACTGAAGAAATGA+GGG 0.609109 7_2:+79624274 Msa1080240:three_prime_UTR
AAGATGTTAAGCGGCAGAGT+CGG 0.611463 7_2:-79621910 None:intergenic
TGATGATCATAGTACTCATG+AGG 0.611714 7_2:+79623549 Msa1080240:CDS
TCAAATATTAAGACCAACAA+GGG 0.614018 7_2:-79621865 None:intergenic
GATGATCATAGTACTCATGA+GGG 0.620992 7_2:+79623550 Msa1080240:CDS
TGAAGATTGAAGATGTTAAG+CGG 0.622485 7_2:-79621919 None:intergenic
TGAAGGAGTTGAAGCACTAG+TGG 0.623923 7_2:-79622357 None:intergenic
CGATGATGTGTCGAATTCAG+TGG 0.625749 7_2:-79623521 None:intergenic
AACTACCAACAATTTCCCTA+CGG 0.632466 7_2:+79622169 Msa1080240:CDS
TGTTAAGAGAAGAAGAGTGG+AGG 0.635425 7_2:+79623749 Msa1080240:CDS
TAGTGGAAGAAGCTTCTGGA+AGG 0.636390 7_2:+79623618 Msa1080240:CDS
CTAGAAAGTTGATCCCAAAG+AGG 0.637397 7_2:-79622524 None:intergenic
ACGGCGGAGCTATTCCCCGC+CGG 0.640713 7_2:+79622188 Msa1080240:CDS
GTACTGAGGGAGGAAATATG+TGG 0.650852 7_2:+79624148 Msa1080240:CDS
TACCAACAATTTCCCTACGG+CGG 0.660564 7_2:+79622172 Msa1080240:CDS
TTCTTGATGAGTACTGAGGG+AGG 0.678329 7_2:+79624138 Msa1080240:CDS
ATGATCATAGTACTCATGAG+GGG 0.712141 7_2:+79623551 Msa1080240:CDS
AGGAGTTGAAGCACTAGTGG+TGG 0.716487 7_2:-79622354 None:intergenic
ACAAAATCATGAAGACAACG+AGG 0.773702 7_2:-79622272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAGAGATAATAAAA+GGG - chr7_2:79622852-79622871 None:intergenic 10.0%
!! TTAAATAAAGAGATAATAAA+AGG - chr7_2:79622853-79622872 None:intergenic 10.0%
!!! TTTATATTTTTTTGACAAAA+TGG - chr7_2:79624400-79624419 None:intergenic 10.0%
!! TTGTCAAAAAAATATAAATA+TGG + chr7_2:79624402-79624421 Msa1080240:three_prime_UTR 10.0%
!! TATATTATAAGATAAGGAAA+AGG - chr7_2:79622001-79622020 None:intergenic 15.0%
!! ATTGCATATATTATAAGATA+AGG - chr7_2:79622007-79622026 None:intergenic 15.0%
!! TGTTTATATAATGTTAACAA+TGG + chr7_2:79624000-79624019 Msa1080240:CDS 15.0%
!! TGATGATATTATTACTTATT+AGG + chr7_2:79624315-79624334 Msa1080240:three_prime_UTR 15.0%
!! TATTACTTATTAGGTAATTA+AGG + chr7_2:79624324-79624343 Msa1080240:three_prime_UTR 15.0%
!!! ATCAATATTTTTATCAATCT+CGG + chr7_2:79624353-79624372 Msa1080240:three_prime_UTR 15.0%
!!! ATACTATTGAAATTTGAGAT+AGG - chr7_2:79622050-79622069 None:intergenic 20.0%
!! AAACATACCAAATAATTTGA+AGG - chr7_2:79622585-79622604 None:intergenic 20.0%
!!! TTTTTGTGGAATTTTTGTTA+AGG + chr7_2:79622698-79622717 Msa1080240:intron 20.0%
!!! TTTAAAATACACTCAACTTT+CGG + chr7_2:79622868-79622887 Msa1080240:intron 20.0%
!!! ATGTCATTTAAATTGTCAAT+AGG - chr7_2:79623024-79623043 None:intergenic 20.0%
!! AAAACAACAAAAGCTTAATT+GGG - chr7_2:79623183-79623202 None:intergenic 20.0%
!! AAAAACAACAAAAGCTTAAT+TGG - chr7_2:79623184-79623203 None:intergenic 20.0%
!!! ACAACTTTTTTTTTCTTCTA+AGG + chr7_2:79624227-79624246 Msa1080240:three_prime_UTR 20.0%
!!! ACAAAAAGTTAGTTTAATGA+TGG + chr7_2:79624452-79624471 Msa1080240:three_prime_UTR 20.0%
!!! CAAAAAGTTAGTTTAATGAT+GGG + chr7_2:79624453-79624472 Msa1080240:three_prime_UTR 20.0%
!! AATGATATGTAATTCATGTA+TGG + chr7_2:79624607-79624626 Msa1080240:three_prime_UTR 20.0%
! TCAAATATTAAGACCAACAA+GGG - chr7_2:79621868-79621887 None:intergenic 25.0%
! TATCATATTCCATTATCTCA+TGG + chr7_2:79622067-79622086 Msa1080240:CDS 25.0%
!!! TACTATCATAGTGTTGATTA+TGG - chr7_2:79622103-79622122 None:intergenic 25.0%
! TCTAAATTACCACTAAATGA+AGG - chr7_2:79622377-79622396 None:intergenic 25.0%
!! TCCTTTTCCTTCAAATTATT+TGG + chr7_2:79622575-79622594 Msa1080240:intron 25.0%
! ACCAAATAATTTGAAGGAAA+AGG - chr7_2:79622579-79622598 None:intergenic 25.0%
! TTTGTGTTAACAAAAATGAG+TGG + chr7_2:79622602-79622621 Msa1080240:intron 25.0%
! TAATTATTTATGCTTGCACT+TGG + chr7_2:79622652-79622671 Msa1080240:intron 25.0%
! CAAAAATTCCACAAAAAGTA+GGG - chr7_2:79622695-79622714 None:intergenic 25.0%
! ACAAAAATTCCACAAAAAGT+AGG - chr7_2:79622696-79622715 None:intergenic 25.0%
!! TTTTGTTAAGGTTCTTTTAC+TGG + chr7_2:79622710-79622729 Msa1080240:intron 25.0%
! AAAAAAGGTAGTACTAATCT+TGG - chr7_2:79622787-79622806 None:intergenic 25.0%
! ACAATTTCAAAAGGGAAAAA+AGG - chr7_2:79622802-79622821 None:intergenic 25.0%
! AATTAATATTGAACCCTAGT+TGG - chr7_2:79623156-79623175 None:intergenic 25.0%
! AAACAACAAAAGCTTAATTG+GGG - chr7_2:79623182-79623201 None:intergenic 25.0%
! ATTATTGCTTTCTCCATATA+AGG - chr7_2:79623395-79623414 None:intergenic 25.0%
!!! TGGTACAAAAATTGTTTTGT+GGG - chr7_2:79623435-79623454 None:intergenic 25.0%
!!! TTGGTACAAAAATTGTTTTG+TGG - chr7_2:79623436-79623455 None:intergenic 25.0%
!!! TGGAAAAAGAGCATAAATTT+TGG + chr7_2:79623791-79623810 Msa1080240:CDS 25.0%
!!! GGAAAAAGAGCATAAATTTT+GGG + chr7_2:79623792-79623811 Msa1080240:CDS 25.0%
! TGGAAATAATAAGAAGAGAA+AGG + chr7_2:79623924-79623943 Msa1080240:CDS 25.0%
! ATGATAACAACAATGTTGAT+CGG + chr7_2:79623974-79623993 Msa1080240:CDS 25.0%
! TATAATGTTAACAATGGAGA+TGG + chr7_2:79624006-79624025 Msa1080240:CDS 25.0%
! TTGATCATTAACATCACAAT+AGG - chr7_2:79624040-79624059 None:intergenic 25.0%
! ATTGTGATGTTAATGATCAA+AGG + chr7_2:79624040-79624059 Msa1080240:CDS 25.0%
! TTGTGATGTTAATGATCAAA+GGG + chr7_2:79624041-79624060 Msa1080240:CDS 25.0%
! GCAAAGCATAAATGATAATT+AGG - chr7_2:79624540-79624559 None:intergenic 25.0%
! TATCATTTATGCTTTGCAAA+TGG + chr7_2:79624543-79624562 Msa1080240:three_prime_UTR 25.0%
CTCAAATATTAAGACCAACA+AGG - chr7_2:79621869-79621888 None:intergenic 30.0%
TGAAGATTGAAGATGTTAAG+CGG - chr7_2:79621922-79621941 None:intergenic 30.0%
ATTCCATTATCTCATGGAAA+TGG + chr7_2:79622073-79622092 Msa1080240:CDS 30.0%
!! AAATTGTTGGTAGTTGATCT+TGG - chr7_2:79622164-79622183 None:intergenic 30.0%
AATTTAGAAGCTGAAACTAC+TGG + chr7_2:79622389-79622408 Msa1080240:CDS 30.0%
TTCAAAGAAGCTACTCAAAA+AGG + chr7_2:79622500-79622519 Msa1080240:CDS 30.0%
!!! AATTTTGTCCCTACTTTTTG+TGG + chr7_2:79622684-79622703 Msa1080240:intron 30.0%
AACACTTTGCACTTAAAAGA+GGG - chr7_2:79622828-79622847 None:intergenic 30.0%
AAACACTTTGCACTTAAAAG+AGG - chr7_2:79622829-79622848 None:intergenic 30.0%
! TTTTGTGAGCAAATTCATTG+AGG + chr7_2:79622907-79622926 Msa1080240:intron 30.0%
TTTGTGAGCAAATTCATTGA+GGG + chr7_2:79622908-79622927 Msa1080240:intron 30.0%
CTAATTCTATCTGTCTAACA+TGG + chr7_2:79622955-79622974 Msa1080240:intron 30.0%
! CAATAGGAATGAGTTTTTGA+AGG - chr7_2:79623008-79623027 None:intergenic 30.0%
ACATATTACACGACAATACA+TGG + chr7_2:79623052-79623071 Msa1080240:intron 30.0%
AATATTCATAGCTCCAACTA+GGG + chr7_2:79623140-79623159 Msa1080240:intron 30.0%
AACAACAAAAGCTTAATTGG+GGG - chr7_2:79623181-79623200 None:intergenic 30.0%
! CATTGCTTGTATTGATGTTA+AGG + chr7_2:79623221-79623240 Msa1080240:intron 30.0%
CAAATACTACAAAAAGACCA+AGG + chr7_2:79623312-79623331 Msa1080240:CDS 30.0%
! TTTTTGTACCAACAACAATC+AGG + chr7_2:79623444-79623463 Msa1080240:CDS 30.0%
AAACATTTCCTGATTGTTGT+TGG - chr7_2:79623455-79623474 None:intergenic 30.0%
! ATCACAGTGTTTGTTAATGT+GGG - chr7_2:79623482-79623501 None:intergenic 30.0%
! TATCACAGTGTTTGTTAATG+TGG - chr7_2:79623483-79623502 None:intergenic 30.0%
GAAGCTTTGCAAAAATTAAC+AGG + chr7_2:79623859-79623878 Msa1080240:CDS 30.0%
ATCTCGGAGAGAAAAAAATA+TGG + chr7_2:79624369-79624388 Msa1080240:three_prime_UTR 30.0%
! TGTCTTCAATTTTTCTGTTG+AGG - chr7_2:79624433-79624452 None:intergenic 30.0%
! TATATTCCATCAAGTGTTGT+TGG + chr7_2:79624480-79624499 Msa1080240:three_prime_UTR 30.0%
! ATATTCCATCAAGTGTTGTT+GGG + chr7_2:79624481-79624500 Msa1080240:three_prime_UTR 30.0%
ATTAAGACCAACAAGGGTAA+TGG - chr7_2:79621862-79621881 None:intergenic 35.0%
CTTCCATTTCCATGAGATAA+TGG - chr7_2:79622079-79622098 None:intergenic 35.0%
AACTACCAACAATTTCCCTA+CGG + chr7_2:79622169-79622188 Msa1080240:CDS 35.0%
! TCTCATAGTGTTGTTGATGT+GGG - chr7_2:79622217-79622236 None:intergenic 35.0%
! ATCTCATAGTGTTGTTGATG+TGG - chr7_2:79622218-79622237 None:intergenic 35.0%
! CACTATGAGATGATGATGTT+TGG + chr7_2:79622227-79622246 Msa1080240:CDS 35.0%
ACAAAATCATGAAGACAACG+AGG - chr7_2:79622275-79622294 None:intergenic 35.0%
TGAGTAGCTTCTTTGAATTG+AGG - chr7_2:79622497-79622516 None:intergenic 35.0%
TACTCAAAAAGGTCCTCTTT+GGG + chr7_2:79622511-79622530 Msa1080240:CDS 35.0%
! GAGGGTACACAATTTCAAAA+GGG - chr7_2:79622810-79622829 None:intergenic 35.0%
! AGAGGGTACACAATTTCAAA+AGG - chr7_2:79622811-79622830 None:intergenic 35.0%
TTGTGAGCAAATTCATTGAG+GGG + chr7_2:79622909-79622928 Msa1080240:intron 35.0%
CTAGTTGGAGCTATGAATAT+TGG - chr7_2:79623141-79623160 None:intergenic 35.0%
CAATATTCATAGCTCCAACT+AGG + chr7_2:79623139-79623158 Msa1080240:intron 35.0%
AGGATAATGTGTGAAGAACA+TGG + chr7_2:79623241-79623260 Msa1080240:intron 35.0%
TACTACAAAAAGACCAAGGA+AGG + chr7_2:79623316-79623335 Msa1080240:CDS 35.0%
TGATGATCATAGTACTCATG+AGG + chr7_2:79623549-79623568 Msa1080240:CDS 35.0%
GATGATCATAGTACTCATGA+GGG + chr7_2:79623550-79623569 Msa1080240:CDS 35.0%
ATGATCATAGTACTCATGAG+GGG + chr7_2:79623551-79623570 Msa1080240:CDS 35.0%
!!! CCTCTTTTTTCTCTTATCCA+TGG - chr7_2:79623596-79623615 None:intergenic 35.0%
CCATGGATAAGAGAAAAAAG+AGG + chr7_2:79623593-79623612 Msa1080240:CDS 35.0%
AAGAGAAAAAAGAGGAGTAG+TGG + chr7_2:79623601-79623620 Msa1080240:CDS 35.0%
TGATTCACAGCTGAAGAAAT+TGG + chr7_2:79623660-79623679 Msa1080240:CDS 35.0%
CACAAAGACATTGGAACAAA+AGG + chr7_2:79623714-79623733 Msa1080240:CDS 35.0%
TGGAACAAAAGGAAAAAGAG+AGG + chr7_2:79623725-79623744 Msa1080240:CDS 35.0%
GGAACAAAAGGAAAAAGAGA+GGG + chr7_2:79623726-79623745 Msa1080240:CDS 35.0%
GAAACAAGAGAAAGAAAGGT+TGG + chr7_2:79623771-79623790 Msa1080240:CDS 35.0%
ACTCAATCTTCTTCTCATGA+TGG + chr7_2:79623904-79623923 Msa1080240:CDS 35.0%
AATGATCAAAGGGAAGAACT+TGG + chr7_2:79624051-79624070 Msa1080240:CDS 35.0%
ATGATCAAAGGGAAGAACTT+GGG + chr7_2:79624052-79624071 Msa1080240:CDS 35.0%
!!! AAACTTCAACTCACTGGTTT+TGG - chr7_2:79624206-79624225 None:intergenic 35.0%
AAGAGCTAACTGAAGAAATG+AGG + chr7_2:79624273-79624292 Msa1080240:three_prime_UTR 35.0%
AGAGCTAACTGAAGAAATGA+GGG + chr7_2:79624274-79624293 Msa1080240:three_prime_UTR 35.0%
! TATTCCATCAAGTGTTGTTG+GGG + chr7_2:79624482-79624501 Msa1080240:three_prime_UTR 35.0%
TTATGCTTTGCAAATGGATC+TGG + chr7_2:79624549-79624568 Msa1080240:three_prime_UTR 35.0%
! TGAGTCTTTTCATTGACGAC+AGG + chr7_2:79621885-79621904 Msa1080240:five_prime_UTR 40.0%
GCTTCAACTCCTTCATTTAG+TGG + chr7_2:79622365-79622384 Msa1080240:CDS 40.0%
!! GCTGAAACTACTGGTTTCAT+TGG + chr7_2:79622398-79622417 Msa1080240:CDS 40.0%
TTGATGCTTCAACTGGAAGA+TGG + chr7_2:79622423-79622442 Msa1080240:CDS 40.0%
AGTGTAAGAGTCTCTTGTCT+AGG - chr7_2:79622449-79622468 None:intergenic 40.0%
CTACTCAAAAAGGTCCTCTT+TGG + chr7_2:79622510-79622529 Msa1080240:CDS 40.0%
! CTAGAAAGTTGATCCCAAAG+AGG - chr7_2:79622527-79622546 None:intergenic 40.0%
!! CTCTTTGGGATCAACTTTCT+AGG + chr7_2:79622525-79622544 Msa1080240:CDS 40.0%
TTGGGATCAACTTTCTAGGT+AGG + chr7_2:79622529-79622548 Msa1080240:intron 40.0%
TGTGAGCAAATTCATTGAGG+GGG + chr7_2:79622910-79622929 Msa1080240:intron 40.0%
! AAATTCATTGAGGGGGTACA+AGG + chr7_2:79622917-79622936 Msa1080240:intron 40.0%
! AATTCATTGAGGGGGTACAA+GGG + chr7_2:79622918-79622937 Msa1080240:intron 40.0%
AGGAAGAGTCTGTGATTGAT+TGG - chr7_2:79622988-79623007 None:intergenic 40.0%
!! GTACGTAGCATGTGTTACTT+TGG + chr7_2:79623110-79623129 Msa1080240:intron 40.0%
GTGAAGAACATGGCTATCAA+AGG + chr7_2:79623251-79623270 Msa1080240:CDS 40.0%
AACATGGCTATCAAAGGAGT+GGG + chr7_2:79623257-79623276 Msa1080240:CDS 40.0%
AAAGGAGTGGGAAAAAATGC+AGG + chr7_2:79623269-79623288 Msa1080240:CDS 40.0%
AAGGAGTGGGAAAAAATGCA+GGG + chr7_2:79623270-79623289 Msa1080240:CDS 40.0%
GAAAAGCAGGAAGACAAGAT+GGG + chr7_2:79623338-79623357 Msa1080240:CDS 40.0%
! CGTCAACTTGAAGCCTTATA+TGG + chr7_2:79623379-79623398 Msa1080240:CDS 40.0%
CAAAGAGAATGAGTTCTCCA+TGG + chr7_2:79623576-79623595 Msa1080240:CDS 40.0%
TTCACAGCTGAAGAAATTGG+TGG + chr7_2:79623663-79623682 Msa1080240:CDS 40.0%
GGAGAAACTCACAAAGACAT+TGG + chr7_2:79623705-79623724 Msa1080240:CDS 40.0%
TGTTAAGAGAAGAAGAGTGG+AGG + chr7_2:79623749-79623768 Msa1080240:CDS 40.0%
GGAGGAAACAAGAGAAAGAA+AGG + chr7_2:79623767-79623786 Msa1080240:CDS 40.0%
TTTGGGCTAAAGAAAGAGCT+TGG + chr7_2:79623809-79623828 Msa1080240:CDS 40.0%
AAAGAGCTTGGATTGAAGCT+AGG + chr7_2:79623821-79623840 Msa1080240:CDS 40.0%
AAGAGCTTGGATTGAAGCTA+GGG + chr7_2:79623822-79623841 Msa1080240:CDS 40.0%
! GGGAGAGTACAAACAAATGA+TGG + chr7_2:79624072-79624091 Msa1080240:CDS 40.0%
CCTCAGTACTCATCAAGAAT+GGG - chr7_2:79624137-79624156 None:intergenic 40.0%
!! CCATTCTTGATGAGTACTGA+GGG + chr7_2:79624135-79624154 Msa1080240:CDS 40.0%
TACTGAGGGAGGAAATATGT+GGG + chr7_2:79624149-79624168 Msa1080240:CDS 40.0%
GTGGGAGAATTACAACTTGA+AGG + chr7_2:79624167-79624186 Msa1080240:CDS 40.0%
GTTGTGAAACTTCAACTCAC+TGG - chr7_2:79624212-79624231 None:intergenic 40.0%
TTGGGGTATGACACTAATTC+AGG + chr7_2:79624499-79624518 Msa1080240:three_prime_UTR 40.0%
AAGATGTTAAGCGGCAGAGT+CGG - chr7_2:79621913-79621932 None:intergenic 45.0%
TACCAACAATTTCCCTACGG+CGG + chr7_2:79622172-79622191 Msa1080240:CDS 45.0%
! TGAAGGAGTTGAAGCACTAG+TGG - chr7_2:79622360-79622379 None:intergenic 45.0%
!! ATTGGCGTTGATGCTTCAAC+TGG + chr7_2:79622416-79622435 Msa1080240:CDS 45.0%
GAACATGGCTATCAAAGGAG+TGG + chr7_2:79623256-79623275 Msa1080240:CDS 45.0%
AAGACCAAGGAAGGAAAAGC+AGG + chr7_2:79623325-79623344 Msa1080240:CDS 45.0%
!! TCTTCCTGCTTTTCCTTCCT+TGG - chr7_2:79623332-79623351 None:intergenic 45.0%
GGAAAAGCAGGAAGACAAGA+TGG + chr7_2:79623337-79623356 Msa1080240:CDS 45.0%
TGTGGGAGTGAAGATGAAGA+AGG - chr7_2:79623418-79623437 None:intergenic 45.0%
CGAATTCAGTGGAGTTTGTG+AGG - chr7_2:79623513-79623532 None:intergenic 45.0%
CGATGATGTGTCGAATTCAG+TGG - chr7_2:79623524-79623543 None:intergenic 45.0%
TAGTGGAAGAAGCTTCTGGA+AGG + chr7_2:79623618-79623637 Msa1080240:CDS 45.0%
TGGTGGAGAAGCAAGAAGAA+TGG + chr7_2:79623680-79623699 Msa1080240:CDS 45.0%
GGAGAAGCAAGAAGAATGGT+TGG + chr7_2:79623684-79623703 Msa1080240:CDS 45.0%
GGGTGTTAAGAGAAGAAGAG+TGG + chr7_2:79623746-79623765 Msa1080240:CDS 45.0%
!! AGCTAGGGATGCTGCTTTAA+TGG + chr7_2:79623837-79623856 Msa1080240:CDS 45.0%
GTTAACAATGGAGATGGAGC+TGG + chr7_2:79624012-79624031 Msa1080240:CDS 45.0%
! CCCATTCTTGATGAGTACTG+AGG + chr7_2:79624134-79624153 Msa1080240:CDS 45.0%
CCCTCAGTACTCATCAAGAA+TGG - chr7_2:79624138-79624157 None:intergenic 45.0%
!! TTCTTGATGAGTACTGAGGG+AGG + chr7_2:79624138-79624157 Msa1080240:CDS 45.0%
GTACTGAGGGAGGAAATATG+TGG + chr7_2:79624148-79624167 Msa1080240:CDS 45.0%
CATACCCCAACAACACTTGA+TGG - chr7_2:79624489-79624508 None:intergenic 45.0%
! GTGTTGTTGATGTGGGTTGC+CGG - chr7_2:79622210-79622229 None:intergenic 50.0%
ACAGTAACAGCAGCAACAGC+AGG - chr7_2:79622311-79622330 None:intergenic 50.0%
! TGAAGCACTAGTGGTGGTGT+TGG - chr7_2:79622351-79622370 None:intergenic 50.0%
! AGGAGTTGAAGCACTAGTGG+TGG - chr7_2:79622357-79622376 None:intergenic 50.0%
! GGAGTAGTGGAAGAAGCTTC+TGG + chr7_2:79623614-79623633 Msa1080240:CDS 50.0%
CTCCGCCGTAGGGAAATTGT+TGG - chr7_2:79622177-79622196 None:intergenic 55.0%
! TTGTTGATGTGGGTTGCCGG+CGG - chr7_2:79622207-79622226 None:intergenic 55.0%
!! AGTGGTGGTGTTGGTAGGAG+TGG - chr7_2:79622342-79622361 None:intergenic 55.0%
!! GCACTAGTGGTGGTGTTGGT+AGG - chr7_2:79622347-79622366 None:intergenic 55.0%
! TGTTGATGTGGGTTGCCGGC+GGG - chr7_2:79622206-79622225 None:intergenic 60.0%
CGGGGAATAGCTCCGCCGTA+GGG - chr7_2:79622187-79622206 None:intergenic 65.0%
! GTTGATGTGGGTTGCCGGCG+GGG - chr7_2:79622205-79622224 None:intergenic 65.0%
GCGGGGAATAGCTCCGCCGT+AGG - chr7_2:79622188-79622207 None:intergenic 70.0%
ACGGCGGAGCTATTCCCCGC+CGG + chr7_2:79622188-79622207 Msa1080240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79621854 79624647 79621854 ID=Msa1080240;Name=Msa1080240
chr7_2 mRNA 79621854 79624647 79621854 ID=Msa1080240-mRNA-1;Parent=Msa1080240;Name=Msa1080240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166|1|1|1|1|1|2|432|499
chr7_2 exon 79621854 79622546 79621854 ID=Msa1080240-mRNA-1:exon:20035;Parent=Msa1080240-mRNA-1
chr7_2 exon 79623243 79624647 79623243 ID=Msa1080240-mRNA-1:exon:20036;Parent=Msa1080240-mRNA-1
chr7_2 five_prime_UTR 79621854 79622019 79621854 ID=Msa1080240-mRNA-1:five_prime_utr;Parent=Msa1080240-mRNA-1
chr7_2 CDS 79622020 79622546 79622020 ID=Msa1080240-mRNA-1:cds;Parent=Msa1080240-mRNA-1
chr7_2 CDS 79623243 79624215 79623243 ID=Msa1080240-mRNA-1:cds;Parent=Msa1080240-mRNA-1
chr7_2 three_prime_UTR 79624216 79624647 79624216 ID=Msa1080240-mRNA-1:three_prime_utr;Parent=Msa1080240-mRNA-1
Gene Sequence

>Msa1080240

ATGCAATATCTCTTTCACTCTTCTATTCCTATCTCAAATTTCAATAGTATCATATTCCATTATCTCATGGAAATGGAAGACCATAATCAACACTATGATAGTAATAGTATCACTGATCTCAGACAACTCATTAATATTGTTCCAAGATCAACTACCAACAATTTCCCTACGGCGGAGCTATTCCCCGCCGGCAACCCACATCAACAACACTATGAGATGATGATGTTTGGTAGACAAGTAGCAGATATAATGCCTCGTTGTCTTCATGATTTTGTTTCAACAGATTCACCTGCTGTTGCTGCTGTTACTGTTGCTACTGCCACTCCTACCAACACCACCACTAGTGCTTCAACTCCTTCATTTAGTGGTAATTTAGAAGCTGAAACTACTGGTTTCATTGGCGTTGATGCTTCAACTGGAAGATGGCCTAGACAAGAGACTCTTACACTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAAGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGCTATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAGACCAAGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAGCAATAATCCTTCTTCATCTTCACTCCCACAAAACAATTTTTGTACCAACAACAATCAGGAAATGTTTCATTCCCACATTAACAAACACTGTGATAGTCTCAGCCTCACAAACTCCACTGAATTCGACACATCATCGTCAGATGATGATCATAGTACTCATGAGGGGATCAAAGAGAATGAGTTCTCCATGGATAAGAGAAAAAAGAGGAGTAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAGCTGAAGAAATTGGTGGAGAAGCAAGAAGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAAGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGAAAGAAAGGTTGGAAAAAGAGCATAAATTTTGGGCTAAAGAAAGAGCTTGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAAAAATTAACAGGTAATAATGATGAGATAATAAAGACTCAATCTTCTTCTCATGATGGAAATAATAAGAAGAGAAAGGAAAACACAAGAAGTTGTTTTTACTTTGATGATAACAACAATGTTGATCGGTCTTGTTTATATAATGTTAACAATGGAGATGGAGCTGGTTCCTATTGTGATGTTAATGATCAAAGGGAAGAACTTGGGAGAGTACAAACAAATGATGGTTCAAATTCTAATAATGTTGTTGCAGCTGAAAGTTGTTTCCCATTCTTGATGAGTACTGAGGGAGGAAATATGTGGGAGAATTACAACTTGAAGGTTAACAAAGCAAACCAAAACCAGTGA
Protein sequence

>Msa1080240

MQYLFHSSIPISNFNSIIFHYLMEMEDHNQHYDSNSITDLRQLINIVPRSTTNNFPTAELFPAGNPHQQHYEMMMFGRQVADIMPRCLHDFVSTDSPAVAAVTVATATPTNTTTSASTPSFSGNLEAETTGFIGVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGESNNPSSSSLPQNNFCTNNNQEMFHSHINKHCDSLSLTNSTEFDTSSSDDDHSTHEGIKENEFSMDKRKKRSSGRSFWKVKIKDFIDSQLKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALQKLTGNNDEIIKTQSSSHDGNNKKRKENTRSCFYFDDNNNVDRSCLYNVNNGDGAGSYCDVNDQREELGRVQTNDGSNSNNVVAAESCFPFLMSTEGGNMWENYNLKVNKANQNQ*