Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057440 | KAG9158524.1 | 77.358 | 106 | 16 | 2 | 1 | 99 | 16 | 120 | 4.00e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057440 | sp|P42749|UBC5_ARATH | 72.642 | 106 | 21 | 2 | 1 | 99 | 16 | 120 | 1.74e-48 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057440 | A0A151TF26 | 70.000 | 120 | 24 | 3 | 1 | 113 | 16 | 130 | 4.10e-49 | 165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1057440 | 0.821309 | 4.323837e-53 | -8.615850e-47 |
| Msa0648880 | Msa1057440 | 0.820524 | 6.555347e-53 | -8.615850e-47 |
| Msa0657610 | Msa1057440 | 0.809806 | 1.576862e-50 | -8.615850e-47 |
| Msa0657970 | Msa1057440 | 0.812310 | 4.520772e-51 | -8.615850e-47 |
| Msa0682620 | Msa1057440 | 0.802957 | 4.384532e-49 | -8.615850e-47 |
| Msa0688770 | Msa1057440 | 0.805008 | 1.642514e-49 | -8.615850e-47 |
| Msa0701900 | Msa1057440 | 0.815309 | 9.874947e-52 | -8.615850e-47 |
| Msa0157290 | Msa1057440 | 0.821368 | 4.190390e-53 | -8.615850e-47 |
| Msa0179580 | Msa1057440 | 0.812990 | 3.210438e-51 | -8.615850e-47 |
| Msa0200260 | Msa1057440 | 0.805982 | 1.025935e-49 | -8.615850e-47 |
| Msa0226890 | Msa1057440 | 0.822499 | 2.293147e-53 | -8.615850e-47 |
| Msa0480980 | Msa1057440 | 0.808981 | 2.370457e-50 | -8.615850e-47 |
| Msa1057440 | Msa1082500 | 0.815901 | 7.290086e-52 | -8.615850e-47 |
| Msa1057440 | Msa1116130 | -0.803555 | 3.296968e-49 | -8.615850e-47 |
| Msa1057440 | Msa1203250 | 0.819935 | 8.940739e-53 | -8.615850e-47 |
| Msa1057440 | Msa1222970 | 0.809302 | 2.023867e-50 | -8.615850e-47 |
| Msa1057440 | Msa1228210 | 0.805386 | 1.368536e-49 | -8.615850e-47 |
| Msa1057440 | Msa1242220 | 0.805667 | 1.195138e-49 | -8.615850e-47 |
| Msa1057440 | Msa1271300 | 0.810907 | 9.125862e-51 | -8.615850e-47 |
| Msa1057440 | Msa1283860 | 0.846344 | 2.304541e-59 | -8.615850e-47 |
| Msa1057440 | Msa1308380 | 0.815674 | 8.191479e-52 | -8.615850e-47 |
| Msa1057440 | Msa1322890 | 0.824562 | 7.547463e-54 | -8.615850e-47 |
| Msa1057440 | Msa1367080 | 0.819723 | 9.997263e-53 | -8.615850e-47 |
| Msa1057440 | Msa1378760 | 0.820740 | 5.846504e-53 | -8.615850e-47 |
| Msa1057440 | Msa1415640 | 0.801170 | 1.021759e-48 | -8.615850e-47 |
| Msa0243100 | Msa1057440 | 0.801359 | 9.346234e-49 | -8.615850e-47 |
| Msa0287650 | Msa1057440 | 0.800257 | 1.568962e-48 | -8.615850e-47 |
| Msa0517330 | Msa1057440 | 0.804399 | 2.200752e-49 | -8.615850e-47 |
| Msa0533070 | Msa1057440 | 0.820543 | 6.488691e-53 | -8.615850e-47 |
| Msa0555020 | Msa1057440 | 0.802869 | 4.570375e-49 | -8.615850e-47 |
| Msa0581760 | Msa1057440 | 0.801419 | 9.086935e-49 | -8.615850e-47 |
| Msa0602240 | Msa1057440 | 0.836195 | 1.078834e-56 | -8.615850e-47 |
| Msa0602250 | Msa1057440 | 0.832807 | 7.658151e-56 | -8.615850e-47 |
| Msa0880140 | Msa1057440 | 0.819890 | 9.159347e-53 | -8.615850e-47 |
| Msa0909120 | Msa1057440 | 0.821447 | 4.019316e-53 | -8.615850e-47 |
| Msa0909140 | Msa1057440 | 0.807306 | 5.390325e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057440 | MtrunA17_Chr8g0387131 | 76.415 | 106 | 17 | 2 | 1 | 99 | 16 | 120 | 1.34e-51 | 162 |
| Msa1057440 | MtrunA17_Chr8g0348701 | 72.642 | 106 | 21 | 2 | 1 | 99 | 16 | 120 | 9.16e-50 | 157 |
| Msa1057440 | MtrunA17_Chr4g0059291 | 63.281 | 128 | 33 | 4 | 1 | 119 | 16 | 138 | 3.62e-49 | 156 |
| Msa1057440 | MtrunA17_Chr1g0186291 | 76.344 | 93 | 11 | 2 | 1 | 83 | 1 | 92 | 1.11e-42 | 138 |
| Msa1057440 | MtrunA17_Chr8g0387151 | 59.701 | 67 | 19 | 2 | 1 | 60 | 7 | 72 | 1.08e-18 | 75.5 |
| Msa1057440 | MtrunA17_Chr8g0387171 | 61.194 | 67 | 18 | 2 | 1 | 60 | 6 | 71 | 1.96e-18 | 74.7 |
| Msa1057440 | MtrunA17_Chr6g0479281 | 52.381 | 63 | 23 | 1 | 4 | 59 | 9 | 71 | 5.47e-15 | 66.2 |
| Msa1057440 | MtrunA17_Chr2g0316201 | 32.222 | 90 | 55 | 4 | 34 | 121 | 60 | 145 | 2.03e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057440 | AT1G63800.1 | 72.642 | 106 | 21 | 2 | 1 | 99 | 16 | 120 | 1.77e-49 | 157 |
| Msa1057440 | AT1G63800.2 | 72.642 | 106 | 21 | 2 | 1 | 99 | 1 | 105 | 1.81e-49 | 157 |
| Msa1057440 | AT5G41340.1 | 69.811 | 106 | 24 | 2 | 1 | 99 | 16 | 120 | 9.64e-48 | 153 |
| Msa1057440 | AT2G46030.5 | 66.038 | 106 | 28 | 2 | 1 | 99 | 16 | 120 | 5.45e-44 | 143 |
| Msa1057440 | AT2G46030.1 | 66.038 | 106 | 28 | 2 | 1 | 99 | 16 | 120 | 5.45e-44 | 143 |
| Msa1057440 | AT2G46030.4 | 66.038 | 106 | 28 | 2 | 1 | 99 | 19 | 123 | 1.05e-43 | 142 |
| Msa1057440 | AT2G46030.2 | 66.038 | 106 | 28 | 2 | 1 | 99 | 19 | 123 | 1.05e-43 | 142 |
| Msa1057440 | AT2G46030.3 | 66.038 | 106 | 28 | 2 | 1 | 99 | 88 | 192 | 1.86e-43 | 144 |
| Msa1057440 | AT5G41340.2 | 68.235 | 85 | 27 | 0 | 15 | 99 | 1 | 85 | 1.52e-38 | 128 |
| Msa1057440 | AT1G16890.2 | 32.222 | 90 | 55 | 4 | 34 | 121 | 60 | 145 | 2.53e-11 | 58.5 |
| Msa1057440 | AT1G16890.1 | 29.897 | 97 | 62 | 4 | 27 | 121 | 20 | 112 | 3.07e-11 | 57.8 |
| Msa1057440 | AT1G16890.3 | 32.222 | 90 | 55 | 4 | 34 | 121 | 69 | 154 | 4.50e-11 | 58.2 |
| Msa1057440 | AT1G78870.1 | 29.897 | 97 | 62 | 4 | 27 | 121 | 21 | 113 | 5.04e-11 | 57.0 |
| Msa1057440 | AT1G78870.2 | 32.222 | 90 | 55 | 4 | 34 | 121 | 60 | 145 | 5.09e-11 | 57.8 |
| Msa1057440 | AT1G78870.4 | 29.897 | 97 | 62 | 4 | 27 | 121 | 20 | 112 | 5.26e-11 | 57.0 |
Find 26 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTATCAAGAAGGTATA+TGG | 0.324797 | 7_2:+39262124 | Msa1057440:CDS |
| CAAACATGGGACTCCAAGTT+TGG | 0.326459 | 7_2:-39260419 | None:intergenic |
| ACAATAGAAGCAGACTTATA+AGG | 0.329409 | 7_2:-39260187 | None:intergenic |
| ACTCACATTTCATCAACATT+AGG | 0.355490 | 7_2:-39260232 | None:intergenic |
| ACTCACATTTCATCAACATT+AGG | 0.371368 | 7_2:-39262232 | None:intergenic |
| TTCCATATACCTTCTTGATA+AGG | 0.387117 | 7_2:-39262126 | None:intergenic |
| CACAATGGATCTGATGCATT+GGG | 0.400511 | 7_2:-39260623 | None:intergenic |
| ACTTGTAAGTCTCCTTCAAT+TGG | 0.413979 | 7_2:+39262187 | Msa1057440:CDS |
| CAAACTTGGAGTCCCATGTT+TGG | 0.423196 | 7_2:+39260420 | Msa1057440:CDS |
| AGGTATATGGAAGGCAAGAG+TGG | 0.442085 | 7_2:+39262137 | Msa1057440:CDS |
| TTGTTGACAAAACCAATTGA+AGG | 0.473074 | 7_2:-39262199 | None:intergenic |
| TCACAATGGATCTGATGCAT+TGG | 0.485496 | 7_2:-39260624 | None:intergenic |
| TTAATAATGCTTACCAAACA+TGG | 0.488351 | 7_2:-39260433 | None:intergenic |
| AAACTTACTGTGTATAACTT+AGG | 0.490431 | 7_2:-39259685 | None:intergenic |
| TAGATGTTATTAACCAAACT+TGG | 0.492355 | 7_2:+39260406 | Msa1057440:CDS |
| AGGAGTATGGAAGATAAGAG+TGG | 0.530972 | 7_2:+39260147 | Msa1057440:intron |
| TTGGGGTATATAAGAAAATG+AGG | 0.531576 | 7_2:-39260605 | None:intergenic |
| CAGGATGATGAGTGATTACA+TGG | 0.544614 | 7_2:+39259609 | None:intergenic |
| ATCGCAGCTCCTTATCAAGA+AGG | 0.573700 | 7_2:+39262117 | Msa1057440:CDS |
| AAGTTACAAGAATAAACATC+AGG | 0.575888 | 7_2:-39262168 | None:intergenic |
| CTGTGTATAACTTAGGTCGA+TGG | 0.579125 | 7_2:-39259678 | None:intergenic |
| ACATTTCATCAACATTAGGA+TGG | 0.594673 | 7_2:-39260228 | None:intergenic |
| TAATAATGCTTACCAAACAT+GGG | 0.599150 | 7_2:-39260432 | None:intergenic |
| TATATGGAAGGCAAGAGTGG+AGG | 0.629288 | 7_2:+39262140 | Msa1057440:CDS |
| TTATCAAGAAGGTATATGGA+AGG | 0.633544 | 7_2:+39262128 | Msa1057440:CDS |
| ACAATGGATCTGATGCATTG+GGG | 0.675150 | 7_2:-39260622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATCTATGTTAAAATTA+TGG | + | chr7_2:39260760-39260779 | Msa1057440:intron | 15.0% |
| !! | ATATGTAAAATGACAAATTA+TGG | - | chr7_2:39260807-39260826 | None:intergenic | 15.0% |
| !!! | ATTTTACATATAATTCCAAT+TGG | + | chr7_2:39260816-39260835 | Msa1057440:intron | 15.0% |
| !!! | TTTTACATATAATTCCAATT+GGG | + | chr7_2:39260817-39260836 | Msa1057440:intron | 15.0% |
| !! | TATAATGATGTAATTAATGT+TGG | + | chr7_2:39261608-39261627 | Msa1057440:intron | 15.0% |
| !!! | AATTTTTTGACATCAAATTT+TGG | + | chr7_2:39261888-39261907 | Msa1057440:intron | 15.0% |
| !!! | AAACTTTCATTGTTTTCTAA+GGG | + | chr7_2:39260269-39260288 | Msa1057440:intron | 20.0% |
| !!! | TTTTAAGATGAAAGTTCTAT+TGG | + | chr7_2:39260304-39260323 | Msa1057440:intron | 20.0% |
| !!! | AATCTTTTTCTTTGATATTC+AGG | + | chr7_2:39260367-39260386 | Msa1057440:intron | 20.0% |
| !! | TTTACATATAATTCCAATTG+GGG | + | chr7_2:39260818-39260837 | Msa1057440:intron | 20.0% |
| !! | AAAAGAAAACATTAATGTGT+TGG | - | chr7_2:39261027-39261046 | None:intergenic | 20.0% |
| !!! | ACACATTAATGTTTTCTTTT+TGG | + | chr7_2:39261027-39261046 | Msa1057440:intron | 20.0% |
| !!! | CACATTAATGTTTTCTTTTT+GGG | + | chr7_2:39261028-39261047 | Msa1057440:intron | 20.0% |
| !! | TTTGACAAATGAATCAATAT+TGG | - | chr7_2:39261116-39261135 | None:intergenic | 20.0% |
| !!! | CAATAATTTTGAGACAAAAA+GGG | - | chr7_2:39261671-39261690 | None:intergenic | 20.0% |
| !!! | TCAATAATTTTGAGACAAAA+AGG | - | chr7_2:39261672-39261691 | None:intergenic | 20.0% |
| !! | TTGTCTCAAAATTATTGATA+TGG | + | chr7_2:39261674-39261693 | Msa1057440:intron | 20.0% |
| !! | TATACAATCTATAGTACTAA+AGG | - | chr7_2:39261747-39261766 | None:intergenic | 20.0% |
| !! | TATATGTTTGAATTCAATGT+GGG | + | chr7_2:39261763-39261782 | Msa1057440:intron | 20.0% |
| ! | AAACTTACTGTGTATAACTT+AGG | - | chr7_2:39259688-39259707 | None:intergenic | 25.0% |
| ! | TTCATTGATGCAACAAAAAA+GGG | - | chr7_2:39259741-39259760 | None:intergenic | 25.0% |
| ! | ATTCATTGATGCAACAAAAA+AGG | - | chr7_2:39259742-39259761 | None:intergenic | 25.0% |
| !!! | GTTTTTCACTCACTTTTATT+TGG | + | chr7_2:39260100-39260119 | Msa1057440:intron | 25.0% |
| !! | CAAACTTTCATTGTTTTCTA+AGG | + | chr7_2:39260268-39260287 | Msa1057440:intron | 25.0% |
| ! | TAGATGTTATTAACCAAACT+TGG | + | chr7_2:39260406-39260425 | Msa1057440:CDS | 25.0% |
| ! | TAATAATGCTTACCAAACAT+GGG | - | chr7_2:39260435-39260454 | None:intergenic | 25.0% |
| ! | TTAATAATGCTTACCAAACA+TGG | - | chr7_2:39260436-39260455 | None:intergenic | 25.0% |
| ! | AACCTTTACCTTACATATAA+TGG | + | chr7_2:39260457-39260476 | Msa1057440:intron | 25.0% |
| ! | GCATATGAACAAATACTTAA+AGG | + | chr7_2:39260678-39260697 | Msa1057440:intron | 25.0% |
| ! | ATAAGACATTCATGTTCTAT+TGG | - | chr7_2:39260993-39261012 | None:intergenic | 25.0% |
| !!! | TTAATGTTTTCTTTTTGGGT+TGG | + | chr7_2:39261032-39261051 | Msa1057440:intron | 25.0% |
| !!! | TAATGTTTTCTTTTTGGGTT+GGG | + | chr7_2:39261033-39261052 | Msa1057440:intron | 25.0% |
| !! | TATTGGTTGCCATAAATTAT+AGG | - | chr7_2:39261099-39261118 | None:intergenic | 25.0% |
| ! | ACATCATTATAAGCAACATA+AGG | - | chr7_2:39261599-39261618 | None:intergenic | 25.0% |
| ! | AATGTTGGATATGATATTGA+TGG | + | chr7_2:39261623-39261642 | Msa1057440:intron | 25.0% |
| ! | TACTAAAGGAACATTTCAAT+TGG | - | chr7_2:39261733-39261752 | None:intergenic | 25.0% |
| ! | GTATATGTTTGAATTCAATG+TGG | + | chr7_2:39261762-39261781 | Msa1057440:intron | 25.0% |
| ! | AAGTTACAAGAATAAACATC+AGG | - | chr7_2:39262171-39262190 | None:intergenic | 25.0% |
| TTCAACAAAAAACTGTTGCA+TGG | - | chr7_2:39259656-39259675 | None:intergenic | 30.0% | |
| GGAAAAAAATTGATACAACG+GGG | - | chr7_2:39259718-39259737 | None:intergenic | 30.0% | |
| GGGAAAAAAATTGATACAAC+GGG | - | chr7_2:39259719-39259738 | None:intergenic | 30.0% | |
| GGGGAAAAAAATTGATACAA+CGG | - | chr7_2:39259720-39259739 | None:intergenic | 30.0% | |
| TCATTGATGCAACAAAAAAG+GGG | - | chr7_2:39259740-39259759 | None:intergenic | 30.0% | |
| GCATCAACACTTCTAATTAA+AGG | + | chr7_2:39259915-39259934 | Msa1057440:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | - | chr7_2:39259970-39259989 | None:intergenic | 30.0% | |
| ACATTCAATTATGTCTTGTC+AGG | + | chr7_2:39259982-39260001 | Msa1057440:intron | 30.0% | |
| ACAATAGAAGCAGACTTATA+AGG | - | chr7_2:39260190-39260209 | None:intergenic | 30.0% | |
| ACATTTCATCAACATTAGGA+TGG | - | chr7_2:39260231-39260250 | None:intergenic | 30.0% | |
| ACTCACATTTCATCAACATT+AGG | - | chr7_2:39260235-39260254 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGATATTCAGGTC+TGG | + | chr7_2:39260372-39260391 | Msa1057440:intron | 30.0% |
| CACCATTATATGTAAGGTAA+AGG | - | chr7_2:39260462-39260481 | None:intergenic | 30.0% | |
| CTTTACCTTACATATAATGG+TGG | + | chr7_2:39260460-39260479 | Msa1057440:intron | 30.0% | |
| CATTACCACCATTATATGTA+AGG | - | chr7_2:39260468-39260487 | None:intergenic | 30.0% | |
| ACCATGTTTGATTGTATTTG+TGG | + | chr7_2:39260526-39260545 | Msa1057440:intron | 30.0% | |
| ACCACAAATACAATCAAACA+TGG | - | chr7_2:39260530-39260549 | None:intergenic | 30.0% | |
| TTGGGGTATATAAGAAAATG+AGG | - | chr7_2:39260608-39260627 | None:intergenic | 30.0% | |
| CATTCTTGAGAAACTTAACA+AGG | - | chr7_2:39260711-39260730 | None:intergenic | 30.0% | |
| TCTCAAGAATGAAACTGTAA+TGG | + | chr7_2:39260720-39260739 | Msa1057440:intron | 30.0% | |
| ! | CTTTTTGCGTATTATTTGTG+AGG | - | chr7_2:39260920-39260939 | None:intergenic | 30.0% |
| GTAGACTTGCCTATAATTTA+TGG | + | chr7_2:39261087-39261106 | Msa1057440:intron | 30.0% | |
| AGAGGTAGATGATATATCTT+TGG | - | chr7_2:39261245-39261264 | None:intergenic | 30.0% | |
| AATCATGAAGAGAGATTTAG+AGG | - | chr7_2:39261263-39261282 | None:intergenic | 30.0% | |
| GGGAGATCAAGAAAAAATAT+AGG | - | chr7_2:39261289-39261308 | None:intergenic | 30.0% | |
| !! | TTCTTGCTTCATTTTTCGTT+TGG | + | chr7_2:39261439-39261458 | Msa1057440:intron | 30.0% |
| !! | TTTACCCATTTTTCTCAATG+AGG | + | chr7_2:39261821-39261840 | Msa1057440:intron | 30.0% |
| !! | TTACCCATTTTTCTCAATGA+GGG | + | chr7_2:39261822-39261841 | Msa1057440:intron | 30.0% |
| GATTAACACAATTGTAGAAG+TGG | + | chr7_2:39262041-39262060 | Msa1057440:intron | 30.0% | |
| TTCCATATACCTTCTTGATA+AGG | - | chr7_2:39262129-39262148 | None:intergenic | 30.0% | |
| ! | TTATCAAGAAGGTATATGGA+AGG | + | chr7_2:39262128-39262147 | Msa1057440:CDS | 30.0% |
| TTGTTGACAAAACCAATTGA+AGG | - | chr7_2:39262202-39262221 | None:intergenic | 30.0% | |
| CATTGATGCAACAAAAAAGG+GGG | - | chr7_2:39259739-39259758 | None:intergenic | 35.0% | |
| ! | TTTGCCTATTTTCTTCAACG+AGG | + | chr7_2:39259763-39259782 | Msa1057440:intron | 35.0% |
| TCATCCTCGTTGAAGAAAAT+AGG | - | chr7_2:39259770-39259789 | None:intergenic | 35.0% | |
| AACGAGGATGAATTGCATTA+GGG | + | chr7_2:39259779-39259798 | Msa1057440:intron | 35.0% | |
| CCTTATGTGCTAAACACAAT+TGG | - | chr7_2:39259865-39259884 | None:intergenic | 35.0% | |
| CCAATTGTGTTTAGCACATA+AGG | + | chr7_2:39259862-39259881 | Msa1057440:intron | 35.0% | |
| !! | TAGAAGTGTTGATGCTATAC+AGG | - | chr7_2:39259910-39259929 | None:intergenic | 35.0% |
| AGTGAAAAACCTATGTAGCA+CGG | - | chr7_2:39260090-39260109 | None:intergenic | 35.0% | |
| TGCGTATTATTTGTGAGGAT+GGG | - | chr7_2:39260915-39260934 | None:intergenic | 35.0% | |
| TTGCGTATTATTTGTGAGGA+TGG | - | chr7_2:39260916-39260935 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTTTGGGTTGGGAA+TGG | + | chr7_2:39261038-39261057 | Msa1057440:intron | 35.0% |
| !!! | TTTCTTTTTGGGTTGGGAAT+GGG | + | chr7_2:39261039-39261058 | Msa1057440:intron | 35.0% |
| CTAATACATGACAGGACTAT+TGG | - | chr7_2:39261220-39261239 | None:intergenic | 35.0% | |
| CAATAGTCCTGTCATGTATT+AGG | + | chr7_2:39261218-39261237 | Msa1057440:intron | 35.0% | |
| ATTGTGAAGAGTAGACTTAG+AGG | - | chr7_2:39261318-39261337 | None:intergenic | 35.0% | |
| GTTCATTGAAGAGAGAATCA+GGG | - | chr7_2:39261372-39261391 | None:intergenic | 35.0% | |
| TGTTCATTGAAGAGAGAATC+AGG | - | chr7_2:39261373-39261392 | None:intergenic | 35.0% | |
| ! | ATAACCCTTTCTCAGTTTTG+TGG | + | chr7_2:39261398-39261417 | Msa1057440:intron | 35.0% |
| GATACCACAAAACTGAGAAA+GGG | - | chr7_2:39261405-39261424 | None:intergenic | 35.0% | |
| TGATACCACAAAACTGAGAA+AGG | - | chr7_2:39261406-39261425 | None:intergenic | 35.0% | |
| ATAAGCAATACAGTGCAAAC+AGG | - | chr7_2:39261485-39261504 | None:intergenic | 35.0% | |
| TCACCCTCATTGAGAAAAAT+GGG | - | chr7_2:39261828-39261847 | None:intergenic | 35.0% | |
| TTCACCCTCATTGAGAAAAA+TGG | - | chr7_2:39261829-39261848 | None:intergenic | 35.0% | |
| !!! | CAAATTTTGGTGTCGAATAC+AGG | + | chr7_2:39261901-39261920 | Msa1057440:intron | 35.0% |
| TGTGTGTTAGTTGTTGTAGA+AGG | + | chr7_2:39261953-39261972 | Msa1057440:intron | 35.0% | |
| !! | TCAGTTTCACTCGCTTTTAT+TGG | + | chr7_2:39262089-39262108 | Msa1057440:intron | 35.0% |
| !! | CAGTTTCACTCGCTTTTATT+GGG | + | chr7_2:39262090-39262109 | Msa1057440:intron | 35.0% |
| ! | CTCCTTATCAAGAAGGTATA+TGG | + | chr7_2:39262124-39262143 | Msa1057440:CDS | 35.0% |
| ACTTGTAAGTCTCCTTCAAT+TGG | + | chr7_2:39262187-39262206 | Msa1057440:CDS | 35.0% | |
| CTGTGTATAACTTAGGTCGA+TGG | - | chr7_2:39259681-39259700 | None:intergenic | 40.0% | |
| CAACGAGGATGAATTGCATT+AGG | + | chr7_2:39259778-39259797 | Msa1057440:intron | 40.0% | |
| ! | CTTCTAATTAAAGGCGTGTC+CGG | + | chr7_2:39259924-39259943 | Msa1057440:intron | 40.0% |
| ! | TTAAAGGCATGTCCAATGTC+CGG | - | chr7_2:39260057-39260076 | None:intergenic | 40.0% |
| TTCCATACTCCTTCTTGAGA+AGG | - | chr7_2:39260139-39260158 | None:intergenic | 40.0% | |
| ! | AGGAGTATGGAAGATAAGAG+TGG | + | chr7_2:39260147-39260166 | Msa1057440:intron | 40.0% |
| !! | TGTTTTCTAAGGGACATCGA+AGG | + | chr7_2:39260279-39260298 | Msa1057440:intron | 40.0% |
| ACAATGGATCTGATGCATTG+GGG | - | chr7_2:39260625-39260644 | None:intergenic | 40.0% | |
| CACAATGGATCTGATGCATT+GGG | - | chr7_2:39260626-39260645 | None:intergenic | 40.0% | |
| TCACAATGGATCTGATGCAT+TGG | - | chr7_2:39260627-39260646 | None:intergenic | 40.0% | |
| TTTCAGCAGAGGATCATTCA+TGG | - | chr7_2:39260970-39260989 | None:intergenic | 40.0% | |
| !! | TGTTCTATTGGTTTCAGCAG+AGG | - | chr7_2:39260981-39261000 | None:intergenic | 40.0% |
| ! | CATTAATGTGTTGGCAAGTG+AGG | - | chr7_2:39261018-39261037 | None:intergenic | 40.0% |
| ! | CAACCAGTCTTTTTCCTACT+AGG | + | chr7_2:39261166-39261185 | Msa1057440:intron | 40.0% |
| ! | CAGTCTTTTTCCTACTAGGT+CGG | + | chr7_2:39261170-39261189 | Msa1057440:intron | 40.0% |
| TATAAACGATCCGACCTAGT+AGG | - | chr7_2:39261183-39261202 | None:intergenic | 40.0% | |
| CTTTGGACCTAATACATGAC+AGG | - | chr7_2:39261228-39261247 | None:intergenic | 40.0% | |
| AGTAGACTTAGAGGTAGAGA+GGG | - | chr7_2:39261309-39261328 | None:intergenic | 40.0% | |
| ATTGCATTAGGGTCTACGAC+TGG | + | chr7_2:39259790-39259809 | Msa1057440:intron | 45.0% | |
| ! | GTCTACGACTGGTTAACTCT+AGG | + | chr7_2:39259801-39259820 | Msa1057440:intron | 45.0% |
| ! | GTCGTATTGGTGTAAGACAC+CGG | - | chr7_2:39259946-39259965 | None:intergenic | 45.0% |
| GCACGGACTCTTCAGATTAA+AGG | - | chr7_2:39260073-39260092 | None:intergenic | 45.0% | |
| !! | CTTTTATTTGGACTCACCGC+AGG | + | chr7_2:39260112-39260131 | Msa1057440:intron | 45.0% |
| GTCCTTCTCAAGAAGGAGTA+TGG | + | chr7_2:39260134-39260153 | Msa1057440:intron | 45.0% | |
| CAAACATGGGACTCCAAGTT+TGG | - | chr7_2:39260422-39260441 | None:intergenic | 45.0% | |
| CAAACTTGGAGTCCCATGTT+TGG | + | chr7_2:39260420-39260439 | Msa1057440:CDS | 45.0% | |
| TCAAGGAAGCAGCTTCACAA+TGG | - | chr7_2:39260641-39260660 | None:intergenic | 45.0% | |
| ! | TGATGATGTCTCACCCCAAT+TGG | - | chr7_2:39260834-39260853 | None:intergenic | 45.0% |
| TGGGGTGAGACATCATCAAT+TGG | + | chr7_2:39260836-39260855 | Msa1057440:intron | 45.0% | |
| CGACCTAGTAGGAAAAAGAC+TGG | - | chr7_2:39261172-39261191 | None:intergenic | 45.0% | |
| GAGTAGACTTAGAGGTAGAG+AGG | - | chr7_2:39261310-39261329 | None:intergenic | 45.0% | |
| ATCGCAGCTCCTTATCAAGA+AGG | + | chr7_2:39262117-39262136 | Msa1057440:CDS | 45.0% | |
| AGGTATATGGAAGGCAAGAG+TGG | + | chr7_2:39262137-39262156 | Msa1057440:CDS | 45.0% | |
| TATATGGAAGGCAAGAGTGG+AGG | + | chr7_2:39262140-39262159 | Msa1057440:CDS | 45.0% | |
| !! | CACATGTGTCGGTGTCGTAT+TGG | - | chr7_2:39259959-39259978 | None:intergenic | 50.0% |
| CAACACGACACTGACACACA+TGG | - | chr7_2:39260031-39260050 | None:intergenic | 50.0% | |
| CATGTGTGTCAGTGTCGTGT+TGG | + | chr7_2:39260029-39260048 | Msa1057440:intron | 50.0% | |
| CTGAAGAGTCCGTGCTACAT+AGG | + | chr7_2:39260078-39260097 | Msa1057440:intron | 50.0% | |
| TCCTTCTTGAGAAGGACCTG+CGG | - | chr7_2:39260131-39260150 | None:intergenic | 50.0% | |
| AGCACGATCTCGCATCATCA+AGG | - | chr7_2:39260658-39260677 | None:intergenic | 50.0% | |
| ! | TGTCAGTGTCGTGTTGGTGC+CGG | + | chr7_2:39260035-39260054 | Msa1057440:intron | 55.0% |
| ACCGCAGGTCCTTCTCAAGA+AGG | + | chr7_2:39260127-39260146 | Msa1057440:intron | 55.0% | |
| !! | GTCGTGTTGGTGCCGGACAT+TGG | + | chr7_2:39260042-39260061 | Msa1057440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 39259613 | 39262252 | 39259613 | ID=Msa1057440;Name=Msa1057440 |
| chr7_2 | mRNA | 39259613 | 39262252 | 39259613 | ID=Msa1057440-mRNA-1;Parent=Msa1057440;Name=Msa1057440-mRNA-1;_AED=0.54;_eAED=0.65;_QI=0|0.5|0.2|0.8|0.25|0.2|5|0|151 |
| chr7_2 | exon | 39259613 | 39259699 | 39259613 | ID=Msa1057440-mRNA-1:exon:7333;Parent=Msa1057440-mRNA-1 |
| chr7_2 | exon | 39260160 | 39260248 | 39260160 | ID=Msa1057440-mRNA-1:exon:7334;Parent=Msa1057440-mRNA-1 |
| chr7_2 | exon | 39260389 | 39260441 | 39260389 | ID=Msa1057440-mRNA-1:exon:7335;Parent=Msa1057440-mRNA-1 |
| chr7_2 | exon | 39260576 | 39260642 | 39260576 | ID=Msa1057440-mRNA-1:exon:7336;Parent=Msa1057440-mRNA-1 |
| chr7_2 | exon | 39262093 | 39262252 | 39262093 | ID=Msa1057440-mRNA-1:exon:7337;Parent=Msa1057440-mRNA-1 |
| chr7_2 | CDS | 39259613 | 39259699 | 39259613 | ID=Msa1057440-mRNA-1:cds;Parent=Msa1057440-mRNA-1 |
| chr7_2 | CDS | 39260160 | 39260248 | 39260160 | ID=Msa1057440-mRNA-1:cds;Parent=Msa1057440-mRNA-1 |
| chr7_2 | CDS | 39260389 | 39260441 | 39260389 | ID=Msa1057440-mRNA-1:cds;Parent=Msa1057440-mRNA-1 |
| chr7_2 | CDS | 39260576 | 39260642 | 39260576 | ID=Msa1057440-mRNA-1:cds;Parent=Msa1057440-mRNA-1 |
| chr7_2 | CDS | 39262093 | 39262252 | 39262093 | ID=Msa1057440-mRNA-1:cds;Parent=Msa1057440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
