Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179580 | XP_024626083.1 | 92.935 | 368 | 21 | 2 | 1 | 366 | 1 | 365 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179580 | A0A072VQ35 | 92.935 | 368 | 21 | 2 | 1 | 366 | 1 | 365 | 0.0 | 703 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001780 | Msa0179580 | 0.804224 | 2.393262e-49 | -8.615850e-47 |
| Msa0017510 | Msa0179580 | 0.823143 | 1.622978e-53 | -8.615850e-47 |
| Msa0040450 | Msa0179580 | 0.804171 | 2.455617e-49 | -8.615850e-47 |
| Msa0046100 | Msa0179580 | 0.803940 | 2.742826e-49 | -8.615850e-47 |
| Msa0047050 | Msa0179580 | 0.837416 | 5.265155e-57 | -8.615850e-47 |
| Msa0068680 | Msa0179580 | 0.826304 | 2.919698e-54 | -8.615850e-47 |
| Msa0076310 | Msa0179580 | 0.805753 | 1.146417e-49 | -8.615850e-47 |
| Msa0077610 | Msa0179580 | 0.801834 | 7.467559e-49 | -8.615850e-47 |
| Msa0101810 | Msa0179580 | -0.834529 | 2.843768e-56 | -8.615850e-47 |
| Msa0105420 | Msa0179580 | 0.813865 | 2.061536e-51 | -8.615850e-47 |
| Msa0110970 | Msa0179580 | 0.816884 | 4.392050e-52 | -8.615850e-47 |
| Msa0124340 | Msa0179580 | 0.802360 | 5.821727e-49 | -8.615850e-47 |
| Msa0157290 | Msa0179580 | 0.823836 | 1.117556e-53 | -8.615850e-47 |
| Msa0169860 | Msa0179580 | 0.804945 | 1.692941e-49 | -8.615850e-47 |
| Msa0179580 | Msa0191250 | 0.813832 | 2.096229e-51 | -8.615850e-47 |
| Msa0179580 | Msa0197660 | 0.812023 | 5.222806e-51 | -8.615850e-47 |
| Msa0179580 | Msa0200260 | 0.812347 | 4.437003e-51 | -8.615850e-47 |
| Msa0179580 | Msa0212310 | 0.801711 | 7.916560e-49 | -8.615850e-47 |
| Msa0179580 | Msa0217400 | 0.819667 | 1.029973e-52 | -8.615850e-47 |
| Msa0179580 | Msa0220580 | 0.814981 | 1.167691e-51 | -8.615850e-47 |
| Msa0179580 | Msa0230770 | 0.817700 | 2.878399e-52 | -8.615850e-47 |
| Msa0179580 | Msa0239800 | 0.806536 | 7.845302e-50 | -8.615850e-47 |
| Msa0179580 | Msa0243100 | 0.814094 | 1.835499e-51 | -8.615850e-47 |
| Msa0179580 | Msa0243710 | 0.802823 | 4.672069e-49 | -8.615850e-47 |
| Msa0179580 | Msa0258760 | 0.809071 | 2.268166e-50 | -8.615850e-47 |
| Msa0179580 | Msa0265380 | 0.803024 | 4.246206e-49 | -8.615850e-47 |
| Msa0179580 | Msa0266000 | -0.808665 | 2.769741e-50 | -8.615850e-47 |
| Msa0179580 | Msa0270100 | 0.808988 | 2.362405e-50 | -8.615850e-47 |
| Msa0179580 | Msa0270270 | 0.814335 | 1.623813e-51 | -8.615850e-47 |
| Msa0179580 | Msa0283520 | 0.804058 | 2.591431e-49 | -8.615850e-47 |
| Msa0179580 | Msa0287650 | 0.817240 | 3.653100e-52 | -8.615850e-47 |
| Msa0179580 | Msa0311860 | 0.812580 | 3.947801e-51 | -8.615850e-47 |
| Msa0179580 | Msa0317510 | 0.810130 | 1.343097e-50 | -8.615850e-47 |
| Msa0179580 | Msa0320740 | 0.821977 | 3.030646e-53 | -8.615850e-47 |
| Msa0179580 | Msa0332000 | 0.800720 | 1.262371e-48 | -8.615850e-47 |
| Msa0179580 | Msa0333720 | -0.832645 | 8.397566e-56 | -8.615850e-47 |
| Msa0179580 | Msa0335040 | 0.803920 | 2.768535e-49 | -8.615850e-47 |
| Msa0179580 | Msa0337860 | 0.806907 | 6.547459e-50 | -8.615850e-47 |
| Msa0179580 | Msa0345970 | 0.822861 | 1.888315e-53 | -8.615850e-47 |
| Msa0179580 | Msa0356890 | -0.811627 | 6.367678e-51 | -8.615850e-47 |
| Msa0179580 | Msa0362780 | 0.813233 | 2.838594e-51 | -8.615850e-47 |
| Msa0179580 | Msa0389340 | 0.809681 | 1.677615e-50 | -8.615850e-47 |
| Msa0179580 | Msa0393680 | 0.804965 | 1.676413e-49 | -8.615850e-47 |
| Msa0179580 | Msa0414170 | 0.806044 | 9.959445e-50 | -8.615850e-47 |
| Msa0179580 | Msa0440750 | 0.808605 | 2.852376e-50 | -8.615850e-47 |
| Msa0179580 | Msa0453330 | 0.803661 | 3.133866e-49 | -8.615850e-47 |
| Msa0179580 | Msa0469160 | 0.803613 | 3.207309e-49 | -8.615850e-47 |
| Msa0179580 | Msa0480000 | 0.807137 | 5.855410e-50 | -8.615850e-47 |
| Msa0179580 | Msa0480980 | 0.811508 | 6.760074e-51 | -8.615850e-47 |
| Msa0179580 | Msa0484780 | 0.810492 | 1.122113e-50 | -8.615850e-47 |
| Msa0179580 | Msa0500360 | 0.813698 | 2.243550e-51 | -8.615850e-47 |
| Msa0179580 | Msa0503580 | 0.806879 | 6.639481e-50 | -8.615850e-47 |
| Msa0179580 | Msa0509610 | 0.828045 | 1.118051e-54 | -8.615850e-47 |
| Msa0179580 | Msa0515010 | 0.821514 | 3.877150e-53 | -8.615850e-47 |
| Msa0179580 | Msa0532060 | 0.838450 | 2.854919e-57 | -8.615850e-47 |
| Msa0179580 | Msa0532170 | 0.837834 | 4.114391e-57 | -8.615850e-47 |
| Msa0179580 | Msa0533070 | 0.816432 | 5.545965e-52 | -8.615850e-47 |
| Msa0179580 | Msa0555020 | 0.809006 | 2.341304e-50 | -8.615850e-47 |
| Msa0179580 | Msa0563840 | 0.807362 | 5.246790e-50 | -8.615850e-47 |
| Msa0179580 | Msa0567020 | 0.815253 | 1.016062e-51 | -8.615850e-47 |
| Msa0179580 | Msa0581760 | 0.824041 | 1.000451e-53 | -8.615850e-47 |
| Msa0179580 | Msa0621490 | 0.800617 | 1.324921e-48 | -8.615850e-47 |
| Msa0179580 | Msa0647130 | 0.811204 | 7.867874e-51 | -8.615850e-47 |
| Msa0179580 | Msa0648880 | 0.826769 | 2.262176e-54 | -8.615850e-47 |
| Msa0179580 | Msa0657610 | 0.805274 | 1.444720e-49 | -8.615850e-47 |
| Msa0179580 | Msa0657970 | 0.807920 | 3.992774e-50 | -8.615850e-47 |
| Msa0179580 | Msa0658570 | 0.822560 | 2.219579e-53 | -8.615850e-47 |
| Msa0179580 | Msa0669440 | 0.802358 | 5.826086e-49 | -8.615850e-47 |
| Msa0179580 | Msa0691380 | 0.829397 | 5.266387e-55 | -8.615850e-47 |
| Msa0179580 | Msa0692230 | 0.818267 | 2.142738e-52 | -8.615850e-47 |
| Msa0179580 | Msa0703490 | 0.826262 | 2.986977e-54 | -8.615850e-47 |
| Msa0179580 | Msa0710060 | 0.812234 | 4.698327e-51 | -8.615850e-47 |
| Msa0179580 | Msa0725250 | 0.809316 | 2.010103e-50 | -8.615850e-47 |
| Msa0179580 | Msa0744040 | 0.802153 | 6.422216e-49 | -8.615850e-47 |
| Msa0179580 | Msa0754720 | -0.804614 | 1.985547e-49 | -8.615850e-47 |
| Msa0179580 | Msa0756630 | -0.844363 | 7.920500e-59 | -8.615850e-47 |
| Msa0179580 | Msa0829620 | 0.823702 | 1.201142e-53 | -8.615850e-47 |
| Msa0179580 | Msa0850960 | 0.800594 | 1.339483e-48 | -8.615850e-47 |
| Msa0179580 | Msa0867890 | 0.825321 | 4.996366e-54 | -8.615850e-47 |
| Msa0179580 | Msa0880140 | 0.826224 | 3.050210e-54 | -8.615850e-47 |
| Msa0179580 | Msa0894890 | 0.815173 | 1.058827e-51 | -8.615850e-47 |
| Msa0179580 | Msa0909120 | 0.800832 | 1.197746e-48 | -8.615850e-47 |
| Msa0179580 | Msa0931720 | 0.801576 | 8.434882e-49 | -8.615850e-47 |
| Msa0179580 | Msa0954130 | 0.812521 | 4.066310e-51 | -8.615850e-47 |
| Msa0179580 | Msa0954550 | 0.815179 | 1.055700e-51 | -8.615850e-47 |
| Msa0179580 | Msa1008490 | 0.804171 | 2.455455e-49 | -8.615850e-47 |
| Msa0179580 | Msa1009000 | 0.804691 | 1.913177e-49 | -8.615850e-47 |
| Msa0179580 | Msa1018100 | 0.819080 | 1.401015e-52 | -8.615850e-47 |
| Msa0179580 | Msa1019020 | 0.807188 | 5.711321e-50 | -8.615850e-47 |
| Msa0179580 | Msa1040120 | 0.834899 | 2.294827e-56 | -8.615850e-47 |
| Msa0179580 | Msa1044420 | 0.827119 | 1.865224e-54 | -8.615850e-47 |
| Msa0179580 | Msa1045200 | 0.816907 | 4.341315e-52 | -8.615850e-47 |
| Msa0179580 | Msa1057440 | 0.812990 | 3.210438e-51 | -8.615850e-47 |
| Msa0179580 | Msa1075220 | -0.810070 | 1.383666e-50 | -8.615850e-47 |
| Msa0179580 | Msa1082500 | 0.836654 | 8.245794e-57 | -8.615850e-47 |
| Msa0179580 | Msa1085300 | 0.814372 | 1.593109e-51 | -8.615850e-47 |
| Msa0179580 | Msa1097800 | 0.823652 | 1.234418e-53 | -8.615850e-47 |
| Msa0179580 | Msa1098560 | 0.806743 | 7.092218e-50 | -8.615850e-47 |
| Msa0179580 | Msa1104000 | 0.820817 | 5.612853e-53 | -8.615850e-47 |
| Msa0179580 | Msa1111110 | 0.840265 | 9.648771e-58 | -8.615850e-47 |
| Msa0179580 | Msa1116130 | -0.831040 | 2.091575e-55 | -8.615850e-47 |
| Msa0179580 | Msa1127650 | 0.800140 | 1.656987e-48 | -8.615850e-47 |
| Msa0179580 | Msa1139000 | -0.809071 | 2.268253e-50 | -8.615850e-47 |
| Msa0179580 | Msa1147570 | 0.833494 | 5.164169e-56 | -8.615850e-47 |
| Msa0179580 | Msa1151900 | 0.809213 | 2.114462e-50 | -8.615850e-47 |
| Msa0179580 | Msa1162550 | -0.815736 | 7.932736e-52 | -8.615850e-47 |
| Msa0179580 | Msa1165360 | 0.801570 | 8.459996e-49 | -8.615850e-47 |
| Msa0179580 | Msa1169090 | 0.811121 | 8.202382e-51 | -8.615850e-47 |
| Msa0179580 | Msa1186060 | 0.809847 | 1.545386e-50 | -8.615850e-47 |
| Msa0179580 | Msa1203250 | 0.842338 | 2.748608e-58 | -8.615850e-47 |
| Msa0179580 | Msa1205130 | 0.800102 | 1.686772e-48 | -8.615850e-47 |
| Msa0179580 | Msa1214480 | 0.815694 | 8.108203e-52 | -8.615850e-47 |
| Msa0179580 | Msa1222970 | 0.823543 | 1.308975e-53 | -8.615850e-47 |
| Msa0179580 | Msa1222990 | 0.831781 | 1.373974e-55 | -8.615850e-47 |
| Msa0179580 | Msa1228210 | 0.814938 | 1.193996e-51 | -8.615850e-47 |
| Msa0179580 | Msa1238930 | 0.810747 | 9.883974e-51 | -8.615850e-47 |
| Msa0179580 | Msa1242220 | 0.825729 | 3.999361e-54 | -8.615850e-47 |
| Msa0179580 | Msa1264020 | 0.836272 | 1.031286e-56 | -8.615850e-47 |
| Msa0179580 | Msa1267060 | 0.813088 | 3.054371e-51 | -8.615850e-47 |
| Msa0179580 | Msa1270610 | 0.822230 | 2.647945e-53 | -8.615850e-47 |
| Msa0179580 | Msa1271280 | 0.811693 | 6.162224e-51 | -8.615850e-47 |
| Msa0179580 | Msa1271300 | 0.850573 | 1.555686e-60 | -8.615850e-47 |
| Msa0179580 | Msa1283860 | 0.837172 | 6.081769e-57 | -8.615850e-47 |
| Msa0179580 | Msa1284260 | 0.806268 | 8.934802e-50 | -8.615850e-47 |
| Msa0179580 | Msa1300490 | 0.811312 | 7.456175e-51 | -8.615850e-47 |
| Msa0179580 | Msa1308380 | 0.826789 | 2.237619e-54 | -8.615850e-47 |
| Msa0179580 | Msa1312680 | 0.807877 | 4.077595e-50 | -8.615850e-47 |
| Msa0179580 | Msa1314340 | 0.800173 | 1.631894e-48 | -8.615850e-47 |
| Msa0179580 | Msa1318240 | 0.826427 | 2.728604e-54 | -8.615850e-47 |
| Msa0179580 | Msa1322860 | 0.823314 | 1.480290e-53 | -8.615850e-47 |
| Msa0179580 | Msa1322890 | 0.842154 | 3.075806e-58 | -8.615850e-47 |
| Msa0179580 | Msa1324780 | 0.803191 | 3.921422e-49 | -8.615850e-47 |
| Msa0179580 | Msa1327050 | 0.834347 | 3.159682e-56 | -8.615850e-47 |
| Msa0179580 | Msa1342430 | 0.805407 | 1.355279e-49 | -8.615850e-47 |
| Msa0179580 | Msa1346370 | 0.811963 | 5.381090e-51 | -8.615850e-47 |
| Msa0179580 | Msa1350840 | 0.813184 | 2.910986e-51 | -8.615850e-47 |
| Msa0179580 | Msa1365040 | -0.803226 | 3.856420e-49 | -8.615850e-47 |
| Msa0179580 | Msa1367080 | 0.815927 | 7.194340e-52 | -8.615850e-47 |
| Msa0179580 | Msa1376890 | 0.820171 | 7.897039e-53 | -8.615850e-47 |
| Msa0179580 | Msa1378760 | 0.815184 | 1.052875e-51 | -8.615850e-47 |
| Msa0179580 | Msa1384350 | 0.829958 | 3.845732e-55 | -8.615850e-47 |
| Msa0179580 | Msa1390050 | 0.802580 | 5.245038e-49 | -8.615850e-47 |
| Msa0179580 | Msa1392260 | 0.806911 | 6.534457e-50 | -8.615850e-47 |
| Msa0179580 | Msa1401530 | 0.809272 | 2.053572e-50 | -8.615850e-47 |
| Msa0179580 | Msa1415640 | 0.804695 | 1.909755e-49 | -8.615850e-47 |
| Msa0179580 | Msa1426000 | 0.810273 | 1.251186e-50 | -8.615850e-47 |
| Msa0179580 | Msa1427760 | 0.824126 | 9.554389e-54 | -8.615850e-47 |
| Msa0179580 | Msa1460020 | 0.817497 | 3.198937e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179580 | MtrunA17_Chr1g0205491 | 92.683 | 369 | 21 | 3 | 1 | 366 | 1 | 366 | 0.0 | 699 |
| Msa0179580 | MtrunA17_Chr1g0205481 | 79.133 | 369 | 70 | 4 | 1 | 366 | 1 | 365 | 0.0 | 596 |
| Msa0179580 | MtrunA17_Chr1g0160271 | 80.707 | 368 | 28 | 2 | 1 | 366 | 1 | 327 | 0.0 | 595 |
| Msa0179580 | MtrunA17_Chr1g0160261 | 67.742 | 217 | 20 | 1 | 52 | 268 | 1 | 167 | 1.36e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179580 | AT3G54970.1 | 50.000 | 370 | 153 | 9 | 1 | 359 | 1 | 349 | 4.68e-113 | 333 |
| Msa0179580 | AT3G54970.6 | 51.133 | 309 | 120 | 8 | 1 | 299 | 1 | 288 | 2.53e-93 | 281 |
| Msa0179580 | AT3G54970.2 | 50.809 | 309 | 121 | 8 | 1 | 299 | 1 | 288 | 6.79e-93 | 280 |
| Msa0179580 | AT3G54970.4 | 49.216 | 319 | 133 | 8 | 52 | 359 | 1 | 301 | 9.91e-91 | 275 |
| Msa0179580 | AT3G54970.5 | 49.097 | 277 | 113 | 7 | 1 | 267 | 1 | 259 | 5.26e-77 | 238 |
| Msa0179580 | AT3G54970.3 | 50.388 | 258 | 100 | 7 | 52 | 299 | 1 | 240 | 4.39e-71 | 223 |
Find 138 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTTATCTTTACTATTT+TGG | 0.132486 | 1_4:+67172691 | None:intergenic |
| ATGCCTCATGCTTGTTATTC+TGG | 0.142610 | 1_4:-67176287 | Msa0179580:CDS |
| CCTTACCCAATCTGAATATT+TGG | 0.169607 | 1_4:+67175870 | None:intergenic |
| TATACAAATTCTATCAAATT+TGG | 0.177330 | 1_4:-67176235 | Msa0179580:CDS |
| CATGGTCAGAACATGAAATT+TGG | 0.188468 | 1_4:-67174049 | Msa0179580:CDS |
| GAGTTAGCCAGGACAAATTT+TGG | 0.208539 | 1_4:-67176587 | Msa0179580:five_prime_UTR |
| GGTTGCGAAACTTGAAAATT+TGG | 0.242677 | 1_4:+67176159 | None:intergenic |
| GCAACATGTTGATAGTATTC+AGG | 0.271626 | 1_4:-67173532 | Msa0179580:CDS |
| ATAAGTGATGGTGTTCTTCC+AGG | 0.321700 | 1_4:-67174750 | Msa0179580:CDS |
| GGAAGAACACCATCACTTAT+AGG | 0.322136 | 1_4:+67174753 | None:intergenic |
| CATTTGGCTGTTGCGGGCTA+TGG | 0.328948 | 1_4:-67175910 | Msa0179580:CDS |
| CTGAATCCACTTCCAGGCTT+TGG | 0.330656 | 1_4:-67177451 | Msa0179580:five_prime_UTR |
| TTGATCCTTTGGACAGCTAT+TGG | 0.337453 | 1_4:-67176540 | Msa0179580:five_prime_UTR |
| CGTCAACTAGTGCTTGAGTA+TGG | 0.342208 | 1_4:-67174720 | Msa0179580:CDS |
| CTTGTACATATGTTATTTGT+TGG | 0.343149 | 1_4:+67172898 | None:intergenic |
| CATTACAACTCTTGTTAATC+TGG | 0.352836 | 1_4:-67176052 | Msa0179580:CDS |
| TCGAGGAAATGGTGCACATT+TGG | 0.362170 | 1_4:-67175926 | Msa0179580:CDS |
| CTGGAAGTGGATTCAGCTTT+GGG | 0.365938 | 1_4:+67177458 | None:intergenic |
| CCTGGAAGTGGATTCAGCTT+TGG | 0.369760 | 1_4:+67177457 | None:intergenic |
| TGAACAACTTTATGAATAGT+TGG | 0.373287 | 1_4:-67172716 | Msa0179580:three_prime_UTR |
| TCAGATTTCATATCAGTAAA+GGG | 0.375423 | 1_4:+67172736 | None:intergenic |
| TGAAGATCCTACTTCTTTGC+TGG | 0.381527 | 1_4:-67172874 | Msa0179580:three_prime_UTR |
| TCTAGAAAACATTGATCCTT+TGG | 0.382043 | 1_4:-67176551 | Msa0179580:five_prime_UTR |
| TGCCTCATGCTTGTTATTCT+GGG | 0.385915 | 1_4:-67176286 | Msa0179580:CDS |
| AACAACATAATAAGCACCTT+TGG | 0.386401 | 1_4:+67172615 | None:intergenic |
| ACTTATGTTCCTCCTCAGTT+TGG | 0.388161 | 1_4:-67175952 | Msa0179580:CDS |
| CCAAAGCTGAATCCACTTCC+AGG | 0.389169 | 1_4:-67177457 | Msa0179580:five_prime_UTR |
| GTAACTCAGCTAAAGCTTCC+CGG | 0.392626 | 1_4:-67177396 | Msa0179580:five_prime_UTR |
| GAGTAAATGCAGGGTGGACC+TGG | 0.395306 | 1_4:-67173378 | Msa0179580:intron |
| GAAACTCCGATCGCGTTTCC+CGG | 0.396259 | 1_4:+67177377 | None:intergenic |
| TACACTTGTGCAGGGTATGC+AGG | 0.400457 | 1_4:-67174106 | Msa0179580:intron |
| CAGTTTGGTATTCGAGGAAA+TGG | 0.404461 | 1_4:-67175937 | Msa0179580:CDS |
| GGTGCACATTTGGCTGTTGC+GGG | 0.405671 | 1_4:-67175916 | Msa0179580:CDS |
| AACAACATGACAAGCACCTT+TGG | 0.409837 | 1_4:+67172653 | None:intergenic |
| GATGGAGAAACTTCTCGAAA+TGG | 0.410131 | 1_4:+67174071 | None:intergenic |
| TTGTACATATGTTATTTGTT+GGG | 0.421958 | 1_4:+67172899 | None:intergenic |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422884 | 1_4:-67175515 | Msa0179580:CDS |
| ATAAGCACCTTTGGAGATAA+TGG | 0.428426 | 1_4:+67172624 | None:intergenic |
| CCTCCTCAGTTTGGTATTCG+AGG | 0.437658 | 1_4:-67175943 | Msa0179580:CDS |
| TTCGAGAAGTTTCTCCATCA+TGG | 0.437777 | 1_4:-67174067 | Msa0179580:CDS |
| TTCAGATTTCATATCAGTAA+AGG | 0.442872 | 1_4:+67172735 | None:intergenic |
| CTCTTTCTTGAAGCTAATCC+AGG | 0.442973 | 1_4:-67176424 | Msa0179580:intron |
| TAAAACTAATGTCAGGTTCA+AGG | 0.443792 | 1_4:-67176501 | Msa0179580:exon |
| CAGCTGCCAAATATTCAGAT+TGG | 0.448719 | 1_4:-67175876 | Msa0179580:CDS |
| ACGCACGAGTCACGAGTGAC+TGG | 0.452344 | 1_4:+67177637 | None:intergenic |
| GTCGTTGAAGAGAGTTAGCC+AGG | 0.457250 | 1_4:-67176598 | Msa0179580:five_prime_UTR |
| ACCTACGAGTGGGAAATATA+AGG | 0.457418 | 1_4:+67172840 | None:intergenic |
| AGTTGTAATGGCCAGCTCCT+TGG | 0.462763 | 1_4:+67176065 | None:intergenic |
| ATGGAGAAACTTCTCGAAAT+GGG | 0.462798 | 1_4:+67174072 | None:intergenic |
| ATGGTCAGAACATGAAATTT+GGG | 0.465513 | 1_4:-67174048 | Msa0179580:CDS |
| TGACAAGAACAACGTCTTTG+AGG | 0.466228 | 1_4:+67177608 | None:intergenic |
| ATTTGGCTGTTGCGGGCTAT+GGG | 0.468361 | 1_4:-67175909 | Msa0179580:CDS |
| AGCTGCCAAATATTCAGATT+GGG | 0.469870 | 1_4:-67175875 | Msa0179580:CDS |
| GAACAACTTTATGAATAGTT+GGG | 0.476524 | 1_4:-67172715 | Msa0179580:three_prime_UTR |
| TGGTGCACATTTGGCTGTTG+CGG | 0.478675 | 1_4:-67175917 | Msa0179580:CDS |
| CAGATTAACAAGAGTTGTAA+TGG | 0.483671 | 1_4:+67176053 | None:intergenic |
| TCTGATTCAACTCCAAAGCC+TGG | 0.484804 | 1_4:+67177439 | None:intergenic |
| GACCCTCTCTTTCAATGCGA+TGG | 0.485431 | 1_4:+67176092 | None:intergenic |
| CAGAAACAAGTTGGATAGAT+CGG | 0.488947 | 1_4:-67177420 | Msa0179580:five_prime_UTR |
| ATATTATTAATATACAATAA+TGG | 0.489555 | 1_4:+67172586 | None:intergenic |
| GCTCCTTTGAGTATTCAGTT+TGG | 0.490148 | 1_4:+67177676 | None:intergenic |
| GCTTCAAGAAAGAGTTTGAC+GGG | 0.491978 | 1_4:+67176433 | None:intergenic |
| TCAAGGTTTCTCTTCAGTAA+TGG | 0.492959 | 1_4:-67176484 | Msa0179580:CDS |
| CCAAATATTCAGATTGGGTA+AGG | 0.502564 | 1_4:-67175870 | Msa0179580:intron |
| TGCTGCAAGTGTGCTGCCAC+TGG | 0.502984 | 1_4:-67176184 | Msa0179580:CDS |
| AAACTCCGATCGCGTTTCCC+GGG | 0.503916 | 1_4:+67177378 | None:intergenic |
| TTAACAAGCATCTGCAATGC+AGG | 0.511211 | 1_4:+67176138 | None:intergenic |
| TCAACTCCAAAGCCTGGAAG+TGG | 0.511766 | 1_4:+67177445 | None:intergenic |
| GAAGATCCTACTTCTTTGCT+GGG | 0.519649 | 1_4:-67172873 | Msa0179580:three_prime_UTR |
| TAACTCAGCTAAAGCTTCCC+GGG | 0.521243 | 1_4:-67177395 | Msa0179580:five_prime_UTR |
| TGCAGGGTATGCAGGGATGA+AGG | 0.521268 | 1_4:-67174098 | Msa0179580:intron |
| GAGAAGGCTCCATGTGATCA+TGG | 0.523928 | 1_4:-67174807 | Msa0179580:CDS |
| GATCGGAGTTTCTCGTCGGC+CGG | 0.525335 | 1_4:-67177366 | Msa0179580:five_prime_UTR |
| GAGGGTCGATTCCAAGGAGC+TGG | 0.530821 | 1_4:-67176076 | Msa0179580:CDS |
| AAACGTGGAAGGATATATCA+TGG | 0.531561 | 1_4:-67173479 | Msa0179580:CDS |
| ATTTCATGTTCTGACCATGA+TGG | 0.532059 | 1_4:+67174053 | None:intergenic |
| ACCCTCTCTTTCAATGCGAT+GGG | 0.533023 | 1_4:+67176093 | None:intergenic |
| TTAGATTTAAACAAAAGTTG+TGG | 0.535919 | 1_4:+67176210 | None:intergenic |
| GGCTAACTCTCTTCAACGAC+AGG | 0.537020 | 1_4:+67176601 | None:intergenic |
| TCAAAGATAAAACTAATGTC+AGG | 0.537281 | 1_4:-67176508 | Msa0179580:exon |
| ATGCAGGATTAGGAAGACTC+TGG | 0.538368 | 1_4:-67175564 | Msa0179580:intron |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1_4:+67173507 | None:intergenic |
| TATATTTCCCACTCGTAGGT+TGG | 0.543172 | 1_4:-67172837 | Msa0179580:three_prime_UTR |
| GAGACAAAGGACTGGGTGCT+TGG | 0.543478 | 1_4:+67172554 | None:intergenic |
| AGCTTCAAGAAAGAGTTTGA+CGG | 0.548677 | 1_4:+67176432 | None:intergenic |
| TGTTAATGATTCAGTGGGGA+AGG | 0.549579 | 1_4:-67176121 | Msa0179580:CDS |
| ATGCTTGTTAATGATTCAGT+GGG | 0.549812 | 1_4:-67176126 | Msa0179580:CDS |
| GAGTTGAATCAGAAACAAGT+TGG | 0.553903 | 1_4:-67177429 | Msa0179580:five_prime_UTR |
| AGCTTCCCGGGAAACGCGAT+CGG | 0.556707 | 1_4:-67177383 | Msa0179580:five_prime_UTR |
| GAAAGAGAGGGTCGATTCCA+AGG | 0.558115 | 1_4:-67176082 | Msa0179580:CDS |
| GATTATCACAACATTAATCC+AGG | 0.558554 | 1_4:-67173355 | Msa0179580:intron |
| AAAGGAAATAGCAACAACAT+TGG | 0.559769 | 1_4:-67177541 | Msa0179580:five_prime_UTR |
| AGCAACAGTTCTGTTACTGA+TGG | 0.560687 | 1_4:+67175527 | None:intergenic |
| ACACTTGTGCAGGGTATGCA+GGG | 0.560761 | 1_4:-67174105 | Msa0179580:intron |
| ATTAATGTTGTGATAATCCC+AGG | 0.561193 | 1_4:+67173360 | None:intergenic |
| ATGTAATGATTGTAATCTCT+AGG | 0.562248 | 1_4:-67172767 | Msa0179580:three_prime_UTR |
| TGGCTGTTGCGGGCTATGGG+AGG | 0.565968 | 1_4:-67175906 | Msa0179580:CDS |
| TAAGTGATGGTGTTCTTCCA+GGG | 0.566670 | 1_4:-67174749 | Msa0179580:CDS |
| TTGGGATTCAGATGATGAGA+AGG | 0.566798 | 1_4:-67174823 | Msa0179580:CDS |
| AACATGACAAGCACCTTTGG+AGG | 0.573376 | 1_4:+67172656 | None:intergenic |
| ATGTCATTCCAGGTAGCTTG+AGG | 0.574242 | 1_4:-67173560 | Msa0179580:intron |
| GTTTCTAGCTGTGTTTCTGC+CGG | 0.574333 | 1_4:+67177347 | None:intergenic |
| ATGACAAGCACCTTTGGAGG+TGG | 0.575503 | 1_4:+67172659 | None:intergenic |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1_4:-67173518 | Msa0179580:CDS |
| TTAACGACCATTATCTCCAA+AGG | 0.576460 | 1_4:-67172631 | Msa0179580:three_prime_UTR |
| CTACATCCCAGCAAAGAAGT+AGG | 0.578419 | 1_4:+67172867 | None:intergenic |
| ACACAGCTAGAAACGCGTCC+AGG | 0.578499 | 1_4:-67177338 | Msa0179580:intron |
| ACTTGAAAATTTGGTGCCAG+TGG | 0.579774 | 1_4:+67176168 | None:intergenic |
| AAAATTTGAGACAAAGGACT+GGG | 0.585234 | 1_4:+67172547 | None:intergenic |
| AGTAAATGCAGGGTGGACCT+GGG | 0.591122 | 1_4:-67173377 | Msa0179580:intron |
| AGCCCATTCTAAAACGTGGA+AGG | 0.592336 | 1_4:-67173490 | Msa0179580:CDS |
| CAGATTTCATATCAGTAAAG+GGG | 0.593534 | 1_4:+67172737 | None:intergenic |
| ACTAGTTGACGTATTATCCC+TGG | 0.595519 | 1_4:+67174732 | None:intergenic |
| TGCCCATCGCATTGAAAGAG+AGG | 0.596482 | 1_4:-67176095 | Msa0179580:CDS |
| GAACATCTACAGTTTGTGAA+AGG | 0.597267 | 1_4:+67176458 | None:intergenic |
| AACAGTTCTGTTACTGATGG+AGG | 0.598319 | 1_4:+67175530 | None:intergenic |
| CGCACGAGTCACGAGTGACT+GGG | 0.598908 | 1_4:+67177638 | None:intergenic |
| AATTCTTAGACCACCTCCAA+AGG | 0.600436 | 1_4:-67172669 | Msa0179580:three_prime_UTR |
| TACAACTCTTGTTAATCTGG+AGG | 0.605680 | 1_4:-67176049 | Msa0179580:CDS |
| ACCTTATATTTCCCACTCGT+AGG | 0.607101 | 1_4:-67172841 | Msa0179580:three_prime_UTR |
| TTACCAAACTGAATACTCAA+AGG | 0.612889 | 1_4:-67177679 | None:intergenic |
| CAGACAGCTCCTATAAGTGA+TGG | 0.617971 | 1_4:-67174762 | Msa0179580:CDS |
| GATGCTTGTTAATGATTCAG+TGG | 0.627074 | 1_4:-67176127 | Msa0179580:CDS |
| TTGAACCAATAGCTGTCCAA+AGG | 0.627579 | 1_4:+67176535 | None:intergenic |
| GCCCATCGCATTGAAAGAGA+GGG | 0.631250 | 1_4:-67176094 | Msa0179580:CDS |
| AATGGTGATCAAATACTCGA+AGG | 0.635890 | 1_4:-67175497 | Msa0179580:CDS |
| GTCAGAACATGAAATTTGGG+AGG | 0.642692 | 1_4:-67174045 | Msa0179580:CDS |
| ATATAAACCAACCTACGAGT+GGG | 0.643470 | 1_4:+67172830 | None:intergenic |
| TATATAAACCAACCTACGAG+TGG | 0.649349 | 1_4:+67172829 | None:intergenic |
| ACGCGATCGGAGTTTCTCGT+CGG | 0.651685 | 1_4:-67177370 | Msa0179580:five_prime_UTR |
| TTCCCAGAATAACAAGCATG+AGG | 0.663339 | 1_4:+67176284 | None:intergenic |
| CCTCGAATACCAAACTGAGG+AGG | 0.678182 | 1_4:+67175943 | None:intergenic |
| AATCAGCCCATTCTAAAACG+TGG | 0.689169 | 1_4:-67173494 | Msa0179580:CDS |
| GTATGATGAGACTATGAGTG+AGG | 0.699298 | 1_4:-67176016 | Msa0179580:CDS |
| TCAAGAAAGAGTTTGACGGG+AGG | 0.714715 | 1_4:+67176436 | None:intergenic |
| ACGAGTCACGAGTGACTGGG+AGG | 0.725977 | 1_4:+67177641 | None:intergenic |
| TTTCCTCGAATACCAAACTG+AGG | 0.731623 | 1_4:+67175940 | None:intergenic |
| TGCTTGTTAATGATTCAGTG+GGG | 0.742138 | 1_4:-67176125 | Msa0179580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTATTGTTTATATT+AGG | - | chr1_4:67175387-67175406 | Msa0179580:intron | 10.0% |
| !!! | ATTTAAAATTTGTATTGATT+GGG | + | chr1_4:67175814-67175833 | None:intergenic | 10.0% |
| !!! | AATTTAAAATTTGTATTGAT+TGG | + | chr1_4:67175815-67175834 | None:intergenic | 10.0% |
| !!! | TATAAAATCCAGTTAATTTT+GGG | + | chr1_4:67173254-67173273 | None:intergenic | 15.0% |
| !! | TATACAAATTCTATCAAATT+TGG | - | chr1_4:67173999-67174018 | Msa0179580:intron | 15.0% |
| !!! | TTATTTTATATTTCTTCATG+TGG | - | chr1_4:67175350-67175369 | Msa0179580:intron | 15.0% |
| !! | TTTATTGTTTATATTAGGAT+TGG | - | chr1_4:67175392-67175411 | Msa0179580:intron | 15.0% |
| !! | TTATTGTTTATATTAGGATT+GGG | - | chr1_4:67175393-67175412 | Msa0179580:intron | 15.0% |
| !!! | TTGATTTATCTTTACTATTT+TGG | + | chr1_4:67177546-67177565 | None:intergenic | 15.0% |
| !! | AAACTAACAAGGTTTATAAT+TGG | + | chr1_4:67172991-67173010 | None:intergenic | 20.0% |
| !! | TATCATCTAATAAACTAACA+AGG | + | chr1_4:67173002-67173021 | None:intergenic | 20.0% |
| !!! | GCGTTTATTTTTAACTTTTT+TGG | - | chr1_4:67173100-67173119 | Msa0179580:intron | 20.0% |
| !! | ATCATAAACCAATTAAAGTT+GGG | + | chr1_4:67173227-67173246 | None:intergenic | 20.0% |
| !! | TATCATAAACCAATTAAAGT+TGG | + | chr1_4:67173228-67173247 | None:intergenic | 20.0% |
| !!! | CTATAAAATCCAGTTAATTT+TGG | + | chr1_4:67173255-67173274 | None:intergenic | 20.0% |
| !!! | TACATTTGAGAATAATTTTC+TGG | - | chr1_4:67173297-67173316 | Msa0179580:intron | 20.0% |
| !! | TTAGATTTAAACAAAAGTTG+TGG | + | chr1_4:67174027-67174046 | None:intergenic | 20.0% |
| !!! | TATCCTGTTTTTTCTTATAT+GGG | + | chr1_4:67174463-67174482 | None:intergenic | 20.0% |
| !!! | ATATCCTGTTTTTTCTTATA+TGG | + | chr1_4:67174464-67174483 | None:intergenic | 20.0% |
| !! | TATAAGAAAAAACAGGATAT+TGG | - | chr1_4:67174464-67174483 | Msa0179580:intron | 20.0% |
| !!! | CAGAAATTTTATATTGTCAA+AGG | + | chr1_4:67174582-67174601 | None:intergenic | 20.0% |
| !!! | GATAAAGGTTTTCAATAAAA+AGG | + | chr1_4:67175059-67175078 | None:intergenic | 20.0% |
| !!! | CCTGGTTTTATAATATTTTT+GGG | + | chr1_4:67175651-67175670 | None:intergenic | 20.0% |
| !!! | TCCTGGTTTTATAATATTTT+TGG | + | chr1_4:67175652-67175671 | None:intergenic | 20.0% |
| !! | ATAAATCTATTTGTCAAATC+CGG | - | chr1_4:67175878-67175897 | Msa0179580:CDS | 20.0% |
| !!! | TTTTGAAATGAACATTTCTA+TGG | + | chr1_4:67175957-67175976 | None:intergenic | 20.0% |
| !!! | TAGTAATATTTTTCTTTGTC+AGG | - | chr1_4:67175989-67176008 | Msa0179580:CDS | 20.0% |
| !! | ATCCTATATAAATATGACAT+TGG | + | chr1_4:67176059-67176078 | None:intergenic | 20.0% |
| !!! | AATAGTTTAAGATTGCAAAA+AGG | + | chr1_4:67176585-67176604 | None:intergenic | 20.0% |
| !! | CATAAAATTAGTATAAACGA+AGG | + | chr1_4:67176818-67176837 | None:intergenic | 20.0% |
| !!! | ATTACTTTCACATTTTGAAT+TGG | - | chr1_4:67176913-67176932 | Msa0179580:intron | 20.0% |
| !!! | TTACTTTCACATTTTGAATT+GGG | - | chr1_4:67176914-67176933 | Msa0179580:intron | 20.0% |
| !!! | TTCTAATTATGTGTTTGTTT+TGG | - | chr1_4:67177096-67177115 | Msa0179580:intron | 20.0% |
| !!! | ATGAAAACAAATAGCAATTT+TGG | + | chr1_4:67177277-67177296 | None:intergenic | 20.0% |
| !!! | TTGTACATATGTTATTTGTT+GGG | + | chr1_4:67177338-67177357 | None:intergenic | 20.0% |
| ! | TGGACTTTCTAAATAATTCA+CGG | + | chr1_4:67172943-67172962 | None:intergenic | 25.0% |
| !! | TTTTCATGCTTCTTATACAA+AGG | - | chr1_4:67173072-67173091 | Msa0179580:intron | 25.0% |
| ! | TCATAAACCAATTAAAGTTG+GGG | + | chr1_4:67173226-67173245 | None:intergenic | 25.0% |
| !!! | ATAATTTTCTGGTTTCAAAG+TGG | - | chr1_4:67173308-67173327 | Msa0179580:intron | 25.0% |
| !!! | TGACATTAGTTTTATCTTTG+AGG | + | chr1_4:67173727-67173746 | None:intergenic | 25.0% |
| ! | TCAAAGATAAAACTAATGTC+AGG | - | chr1_4:67173726-67173745 | Msa0179580:intron | 25.0% |
| !!! | GATTTGACAAAGTATTTTGT+AGG | + | chr1_4:67173872-67173891 | None:intergenic | 25.0% |
| !! | TTTTTCTTATATGGGATTCA+AGG | + | chr1_4:67174455-67174474 | None:intergenic | 25.0% |
| ! | AATCCCATATAAGAAAAAAC+AGG | - | chr1_4:67174457-67174476 | Msa0179580:intron | 25.0% |
| ! | TCACTCTAAGCAAATAATAA+TGG | + | chr1_4:67174529-67174548 | None:intergenic | 25.0% |
| !!! | ATAACTTTTTTCTTCAATGC+AGG | - | chr1_4:67174654-67174673 | Msa0179580:intron | 25.0% |
| ! | CACATAGTTACTAACAAAAA+GGG | + | chr1_4:67174873-67174892 | None:intergenic | 25.0% |
| ! | ACACATAGTTACTAACAAAA+AGG | + | chr1_4:67174874-67174893 | None:intergenic | 25.0% |
| !!! | TGCTTTTAGAAATTAAAGCA+TGG | + | chr1_4:67174961-67174980 | None:intergenic | 25.0% |
| !! | GCTTTAATTTCTAAAAGCAA+CGG | - | chr1_4:67174962-67174981 | Msa0179580:intron | 25.0% |
| !! | CTTTAATTTCTAAAAGCAAC+GGG | - | chr1_4:67174963-67174982 | Msa0179580:intron | 25.0% |
| !! | AGGTTTTCAATAAAAAGGTA+TGG | + | chr1_4:67175054-67175073 | None:intergenic | 25.0% |
| !! | ATTCCATTTCTAGACTTTAT+TGG | - | chr1_4:67175168-67175187 | Msa0179580:intron | 25.0% |
| ! | AAACCAATAAAGTCTAGAAA+TGG | + | chr1_4:67175174-67175193 | None:intergenic | 25.0% |
| ! | TGAAATAAGCTTATGTGTTA+TGG | - | chr1_4:67175324-67175343 | Msa0179580:intron | 25.0% |
| !!! | TTTTTATTTCCATGATCACA+TGG | + | chr1_4:67175439-67175458 | None:intergenic | 25.0% |
| ! | CTGCTAAAAATTTCAAGAAA+GGG | + | chr1_4:67175600-67175619 | None:intergenic | 25.0% |
| ! | TCTGCTAAAAATTTCAAGAA+AGG | + | chr1_4:67175601-67175620 | None:intergenic | 25.0% |
| ! | CCCAAAAATATTATAAAACC+AGG | - | chr1_4:67175648-67175667 | Msa0179580:intron | 25.0% |
| !!! | TTAAATTTTGTTTCGTACGA+TGG | - | chr1_4:67175828-67175847 | Msa0179580:intron | 25.0% |
| ! | TAAATCTATTTGTCAAATCC+GGG | - | chr1_4:67175879-67175898 | Msa0179580:CDS | 25.0% |
| ! | CAAATATTAGTGAAAGCAAA+AGG | + | chr1_4:67175921-67175940 | None:intergenic | 25.0% |
| !! | CTTTTGCTTTCACTAATATT+TGG | - | chr1_4:67175919-67175938 | Msa0179580:CDS | 25.0% |
| !! | CTAATATTTGGAATTTGTCT+TGG | - | chr1_4:67175931-67175950 | Msa0179580:CDS | 25.0% |
| ! | GACCAATGTCATATTTATAT+AGG | - | chr1_4:67176054-67176073 | Msa0179580:CDS | 25.0% |
| !!! | AAGAACTTTTTTGCAAAGTT+GGG | + | chr1_4:67176287-67176306 | None:intergenic | 25.0% |
| !!! | AAAGAACTTTTTTGCAAAGT+TGG | + | chr1_4:67176288-67176307 | None:intergenic | 25.0% |
| !!! | GTTTTAGAGAAAACCAAAAA+AGG | + | chr1_4:67176640-67176659 | None:intergenic | 25.0% |
| ! | AAGTAATGCATAAATTTACC+TGG | + | chr1_4:67176900-67176919 | None:intergenic | 25.0% |
| ! | GTAAATGGATACATATATAG+TGG | + | chr1_4:67176976-67176995 | None:intergenic | 25.0% |
| !!! | AATTGCTATTTGTTTTCATC+AGG | - | chr1_4:67177278-67177297 | Msa0179580:intron | 25.0% |
| !! | TTTTCATCAGGAAAAGATTA+TGG | - | chr1_4:67177290-67177309 | Msa0179580:intron | 25.0% |
| !! | CTTGTACATATGTTATTTGT+TGG | + | chr1_4:67177339-67177358 | None:intergenic | 25.0% |
| ! | ATGTAATGATTGTAATCTCT+AGG | - | chr1_4:67177467-67177486 | Msa0179580:five_prime_UTR | 25.0% |
| ! | TCAGATTTCATATCAGTAAA+GGG | + | chr1_4:67177501-67177520 | None:intergenic | 25.0% |
| ! | TTCAGATTTCATATCAGTAA+AGG | + | chr1_4:67177502-67177521 | None:intergenic | 25.0% |
| ! | TGAACAACTTTATGAATAGT+TGG | - | chr1_4:67177518-67177537 | Msa0179580:five_prime_UTR | 25.0% |
| ! | GAACAACTTTATGAATAGTT+GGG | - | chr1_4:67177519-67177538 | Msa0179580:five_prime_UTR | 25.0% |
| AAAGGAAATAGCAACAACAT+TGG | - | chr1_4:67172693-67172712 | Msa0179580:three_prime_UTR | 30.0% | |
| ! | TAGTTTATGTGTTTTGTGAG+GGG | + | chr1_4:67172756-67172775 | None:intergenic | 30.0% |
| ! | GTAGTTTATGTGTTTTGTGA+GGG | + | chr1_4:67172757-67172776 | None:intergenic | 30.0% |
| AAAAAGAAGAAAGGAAAACC+TGG | + | chr1_4:67172917-67172936 | None:intergenic | 30.0% | |
| ACTTTCTAAATAATTCACGG+TGG | + | chr1_4:67172940-67172959 | None:intergenic | 30.0% | |
| ACATACTTAAACTCTCTCTA+TGG | - | chr1_4:67173123-67173142 | Msa0179580:intron | 30.0% | |
| ! | TATTTTGCCCCAACTTTAAT+TGG | - | chr1_4:67173216-67173235 | Msa0179580:intron | 30.0% |
| TGATATGTCCCAAAATTAAC+TGG | - | chr1_4:67173243-67173262 | Msa0179580:intron | 30.0% | |
| ACATGACAACATACAAAATC+TGG | + | chr1_4:67173411-67173430 | None:intergenic | 30.0% | |
| ! | AAAACTTTTGCAGTGCAAAA+TGG | - | chr1_4:67173604-67173623 | Msa0179580:intron | 30.0% |
| TCTAGAAAACATTGATCCTT+TGG | - | chr1_4:67173683-67173702 | Msa0179580:intron | 30.0% | |
| TAAAACTAATGTCAGGTTCA+AGG | - | chr1_4:67173733-67173752 | Msa0179580:intron | 30.0% | |
| ! | TTGAATGTATCTAAAGTACC+TGG | + | chr1_4:67173831-67173850 | None:intergenic | 30.0% |
| ! | TACTTTGTCAAATCTTTTCC+TGG | - | chr1_4:67173878-67173897 | Msa0179580:intron | 30.0% |
| ! | ATGCTTGTTAATGATTCAGT+GGG | - | chr1_4:67174108-67174127 | Msa0179580:intron | 30.0% |
| CAGATTAACAAGAGTTGTAA+TGG | + | chr1_4:67174184-67174203 | None:intergenic | 30.0% | |
| CATTACAACTCTTGTTAATC+TGG | - | chr1_4:67174182-67174201 | Msa0179580:intron | 30.0% | |
| TTGTATTCTAATTCAGACTC+AGG | + | chr1_4:67174406-67174425 | None:intergenic | 30.0% | |
| AGTTGTCTTGACTTTAGTAA+TGG | - | chr1_4:67174556-67174575 | Msa0179580:intron | 30.0% | |
| TGATGTTCATTCAGATTACT+AGG | - | chr1_4:67174630-67174649 | Msa0179580:intron | 30.0% | |
| ! | TTTTTCTTCAATGCAGGATT+AGG | - | chr1_4:67174660-67174679 | Msa0179580:intron | 30.0% |
| GATAAAATAATCTCACCTTG+CGG | + | chr1_4:67174790-67174809 | None:intergenic | 30.0% | |
| ! | ATTTTTGTTCAAATCTCAGG+AGG | + | chr1_4:67174905-67174924 | None:intergenic | 30.0% |
| ! | CAGATTTTTGTTCAAATCTC+AGG | + | chr1_4:67174908-67174927 | None:intergenic | 30.0% |
| AAAGTTTATGCACTGAACTT+TGG | - | chr1_4:67175015-67175034 | Msa0179580:intron | 30.0% | |
| CAACGTGACAAACAAATAAT+AGG | + | chr1_4:67175122-67175141 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTTCAACCACAA+AGG | - | chr1_4:67175567-67175586 | Msa0179580:intron | 30.0% |
| ! | ATTTTTCTTTGTCAGGAAGA+TGG | - | chr1_4:67175996-67176015 | Msa0179580:CDS | 30.0% |
| ! | TTTTTCTTTGTCAGGAAGAT+GGG | - | chr1_4:67175997-67176016 | Msa0179580:CDS | 30.0% |
| ATGGTCAGAACATGAAATTT+GGG | - | chr1_4:67176186-67176205 | Msa0179580:CDS | 30.0% | |
| ! | ATTCATCACAAGTGTTATTG+AGG | - | chr1_4:67176250-67176269 | Msa0179580:CDS | 30.0% |
| !! | AGTTCTTTTGAAAATGTGAC+TGG | - | chr1_4:67176300-67176319 | Msa0179580:CDS | 30.0% |
| ! | TTTAGTGTACAGCTTTTATG+AGG | + | chr1_4:67176335-67176354 | None:intergenic | 30.0% |
| ! | TACAAAATAGTTTTCTCGTG+AGG | + | chr1_4:67176463-67176482 | None:intergenic | 30.0% |
| TTAGAGAAAACCAAAAAAGG+AGG | + | chr1_4:67176637-67176656 | None:intergenic | 30.0% | |
| !!! | GTTTTCTCTAAAACTCACTT+GGG | - | chr1_4:67176646-67176665 | Msa0179580:intron | 30.0% |
| ATGGACAAAAAAGCAATTTC+AGG | - | chr1_4:67176774-67176793 | Msa0179580:intron | 30.0% | |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1_4:67176846-67176865 | Msa0179580:intron | 30.0% | |
| TCTCAATTTGAGTAAATGCA+GGG | - | chr1_4:67176847-67176866 | Msa0179580:intron | 30.0% | |
| ATTAATGTTGTGATAATCCC+AGG | + | chr1_4:67176877-67176896 | None:intergenic | 30.0% | |
| GATTATCACAACATTAATCC+AGG | - | chr1_4:67176879-67176898 | Msa0179580:intron | 30.0% | |
| ! | TTCACATTTTGAATTGGGAT+TGG | - | chr1_4:67176919-67176938 | Msa0179580:intron | 30.0% |
| ! | TCACATTTTGAATTGGGATT+GGG | - | chr1_4:67176920-67176939 | Msa0179580:intron | 30.0% |
| GTATCCATTTACAAAGTTTG+TGG | - | chr1_4:67176984-67177003 | Msa0179580:intron | 30.0% | |
| AAGACCACAAACTTTGTAAA+TGG | + | chr1_4:67176991-67177010 | None:intergenic | 30.0% | |
| GAATAAACTAATCACACTCA+TGG | - | chr1_4:67177024-67177043 | Msa0179580:intron | 30.0% | |
| CAATGTTAGGAAATATGACT+TGG | + | chr1_4:67177243-67177262 | None:intergenic | 30.0% | |
| GGTAGTATAATTGCAATGTT+AGG | + | chr1_4:67177256-67177275 | None:intergenic | 30.0% | |
| CAGATTTCATATCAGTAAAG+GGG | + | chr1_4:67177500-67177519 | None:intergenic | 30.0% | |
| AACAACATAATAAGCACCTT+TGG | + | chr1_4:67177622-67177641 | None:intergenic | 30.0% | |
| ! | CATGCTTCTTTTCATCTCAA+AGG | - | chr1_4:67172675-67172694 | Msa0179580:three_prime_UTR | 35.0% |
| ! | GGTAGTTTATGTGTTTTGTG+AGG | + | chr1_4:67172758-67172777 | None:intergenic | 35.0% |
| GAGTTGAATCAGAAACAAGT+TGG | - | chr1_4:67172805-67172824 | Msa0179580:three_prime_UTR | 35.0% | |
| ! | CAGAAACAAGTTGGATAGAT+CGG | - | chr1_4:67172814-67172833 | Msa0179580:three_prime_UTR | 35.0% |
| ATATGTTGTCAATCGCACTT+TGG | + | chr1_4:67172963-67172982 | None:intergenic | 35.0% | |
| ! | GCGTATTTCGACAAGTATTT+TGG | - | chr1_4:67173362-67173381 | Msa0179580:CDS | 35.0% |
| CATAAGAACATGCTTCGAAT+GGG | - | chr1_4:67173432-67173451 | Msa0179580:intron | 35.0% | |
| ATAAGAACATGCTTCGAATG+GGG | - | chr1_4:67173433-67173452 | Msa0179580:intron | 35.0% | |
| GCTCTGTTTGGTAAAAATAG+TGG | + | chr1_4:67173507-67173526 | None:intergenic | 35.0% | |
| TTTACCAAACAGAGCCTAAA+TGG | - | chr1_4:67173512-67173531 | Msa0179580:CDS | 35.0% | |
| TTACCAAACAGAGCCTAAAT+GGG | - | chr1_4:67173513-67173532 | Msa0179580:CDS | 35.0% | |
| AGCTTGTAGCTAACCAATAA+TGG | - | chr1_4:67173543-67173562 | Msa0179580:CDS | 35.0% | |
| GCTTGTAGCTAACCAATAAT+GGG | - | chr1_4:67173544-67173563 | Msa0179580:CDS | 35.0% | |
| TAAGCAAACTGTATCACATG+AGG | + | chr1_4:67173580-67173599 | None:intergenic | 35.0% | |
| ! | AGTTAGCCAGGACAAATTTT+GGG | - | chr1_4:67173648-67173667 | Msa0179580:intron | 35.0% |
| TCAAGGTTTCTCTTCAGTAA+TGG | - | chr1_4:67173750-67173769 | Msa0179580:intron | 35.0% | |
| GAACATCTACAGTTTGTGAA+AGG | + | chr1_4:67173779-67173798 | None:intergenic | 35.0% | |
| AGCTTCAAGAAAGAGTTTGA+CGG | + | chr1_4:67173805-67173824 | None:intergenic | 35.0% | |
| !!! | ATCTTTTCCTGGTTTGTTTC+TGG | - | chr1_4:67173889-67173908 | Msa0179580:intron | 35.0% |
| GGTTGCGAAACTTGAAAATT+TGG | + | chr1_4:67174078-67174097 | None:intergenic | 35.0% | |
| ! | GATGCTTGTTAATGATTCAG+TGG | - | chr1_4:67174107-67174126 | Msa0179580:intron | 35.0% |
| ! | TGCTTGTTAATGATTCAGTG+GGG | - | chr1_4:67174109-67174128 | Msa0179580:intron | 35.0% |
| TACAACTCTTGTTAATCTGG+AGG | - | chr1_4:67174185-67174204 | Msa0179580:intron | 35.0% | |
| AGCTGCCAAATATTCAGATT+GGG | - | chr1_4:67174359-67174378 | Msa0179580:intron | 35.0% | |
| CCTTACCCAATCTGAATATT+TGG | + | chr1_4:67174367-67174386 | None:intergenic | 35.0% | |
| CCAAATATTCAGATTGGGTA+AGG | - | chr1_4:67174364-67174383 | Msa0179580:intron | 35.0% | |
| AACAGGATATTGGTGAGTTA+AGG | - | chr1_4:67174474-67174493 | Msa0179580:intron | 35.0% | |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1_4:67174719-67174738 | Msa0179580:CDS | 35.0% | |
| AATGGTGATCAAATACTCGA+AGG | - | chr1_4:67174737-67174756 | Msa0179580:CDS | 35.0% | |
| !! | CTTTTTCATTATTTGCCGCA+AGG | - | chr1_4:67174772-67174791 | Msa0179580:CDS | 35.0% |
| CCAAAGCATATCGAAGATAA+AGG | + | chr1_4:67175074-67175093 | None:intergenic | 35.0% | |
| CCTTTATCTTCGATATGCTT+TGG | - | chr1_4:67175071-67175090 | Msa0179580:intron | 35.0% | |
| !! | TTGAGAAAGAGAGCATCAAA+TGG | + | chr1_4:67175238-67175257 | None:intergenic | 35.0% |
| CTCTTTCTCAAGATTTCACA+AGG | - | chr1_4:67175247-67175266 | Msa0179580:intron | 35.0% | |
| CAAGATTTCACAAGGCAAAA+TGG | - | chr1_4:67175255-67175274 | Msa0179580:intron | 35.0% | |
| CAAACAGACACATAAAAAGC+AGG | + | chr1_4:67175291-67175310 | None:intergenic | 35.0% | |
| GAGATATTGAGATAAAGTCC+TGG | + | chr1_4:67175669-67175688 | None:intergenic | 35.0% | |
| AATTGTCTGCTGATGGTTTA+TGG | - | chr1_4:67175742-67175761 | Msa0179580:intron | 35.0% | |
| !! | TGGTCTTGTTTGTGTAAATG+TGG | - | chr1_4:67175762-67175781 | Msa0179580:intron | 35.0% |
| !! | AATTTGTATTGATTGGGCAG+AGG | + | chr1_4:67175808-67175827 | None:intergenic | 35.0% |
| AGAAAATAGCAAGCACAAAC+AGG | - | chr1_4:67176079-67176098 | Msa0179580:CDS | 35.0% | |
| ACATGATTTACACTTGTGCA+GGG | - | chr1_4:67176120-67176139 | Msa0179580:CDS | 35.0% | |
| ATGGAGAAACTTCTCGAAAT+GGG | + | chr1_4:67176165-67176184 | None:intergenic | 35.0% | |
| ATTTCATGTTCTGACCATGA+TGG | + | chr1_4:67176184-67176203 | None:intergenic | 35.0% | |
| CATGGTCAGAACATGAAATT+TGG | - | chr1_4:67176185-67176204 | Msa0179580:CDS | 35.0% | |
| GACTCCTAGATCTAAATCAA+TGG | - | chr1_4:67176357-67176376 | Msa0179580:intron | 35.0% | |
| !! | TCAGCCATTGATTTAGATCT+AGG | + | chr1_4:67176364-67176383 | None:intergenic | 35.0% |
| TAGATCTAAATCAATGGCTG+AGG | - | chr1_4:67176363-67176382 | Msa0179580:intron | 35.0% | |
| AGATCTAAATCAATGGCTGA+GGG | - | chr1_4:67176364-67176383 | Msa0179580:intron | 35.0% | |
| ! | TACTAGCTTATCTACGAGTT+TGG | - | chr1_4:67176513-67176532 | Msa0179580:exon | 35.0% |
| !!! | AGATTTCAGTCCTCCTTTTT+TGG | - | chr1_4:67176624-67176643 | Msa0179580:intron | 35.0% |
| !!! | GGTTTTCTCTAAAACTCACT+TGG | - | chr1_4:67176645-67176664 | Msa0179580:intron | 35.0% |
| !! | GCAACATGTTGATAGTATTC+AGG | - | chr1_4:67176702-67176721 | Msa0179580:intron | 35.0% |
| !!! | ATCCTTCCACGTTTTAGAAT+GGG | + | chr1_4:67176749-67176768 | None:intergenic | 35.0% |
| !!! | TATCCTTCCACGTTTTAGAA+TGG | + | chr1_4:67176750-67176769 | None:intergenic | 35.0% |
| AAACGTGGAAGGATATATCA+TGG | - | chr1_4:67176755-67176774 | Msa0179580:intron | 35.0% | |
| GACAAAAAAGCAATTTCAGG+TGG | - | chr1_4:67176777-67176796 | Msa0179580:intron | 35.0% | |
| ! | CACATTTTGAATTGGGATTG+GGG | - | chr1_4:67176921-67176940 | Msa0179580:intron | 35.0% |
| ! | ACATTTTGAATTGGGATTGG+GGG | - | chr1_4:67176922-67176941 | Msa0179580:intron | 35.0% |
| ! | ATGGAGAAAGCGATTTTTGA+AGG | - | chr1_4:67177309-67177328 | Msa0179580:intron | 35.0% |
| ! | TGGAGAAAGCGATTTTTGAA+GGG | - | chr1_4:67177310-67177329 | Msa0179580:intron | 35.0% |
| ATATAAACCAACCTACGAGT+GGG | + | chr1_4:67177407-67177426 | None:intergenic | 35.0% | |
| TATATAAACCAACCTACGAG+TGG | + | chr1_4:67177408-67177427 | None:intergenic | 35.0% | |
| TTAACGACCATTATCTCCAA+AGG | - | chr1_4:67177603-67177622 | Msa0179580:five_prime_UTR | 35.0% | |
| ! | ATAAGCACCTTTGGAGATAA+TGG | + | chr1_4:67177613-67177632 | None:intergenic | 35.0% |
| TGACAAGAACAACGTCTTTG+AGG | + | chr1_4:67172629-67172648 | None:intergenic | 40.0% | |
| TCACGGTGGAAAAAGAAGAA+AGG | + | chr1_4:67172926-67172945 | None:intergenic | 40.0% | |
| ACCTAGTTTAGTTGCTTCAC+TGG | - | chr1_4:67173049-67173068 | Msa0179580:intron | 40.0% | |
| ACCAGTGAAGCAACTAAACT+AGG | + | chr1_4:67173053-67173072 | None:intergenic | 40.0% | |
| ! | TCTGGTTTCAAAGTGGTTCA+TGG | - | chr1_4:67173315-67173334 | Msa0179580:intron | 40.0% |
| CTGGTTTCAAAGTGGTTCAT+GGG | - | chr1_4:67173316-67173335 | Msa0179580:intron | 40.0% | |
| TTTCAAAGTGGTTCATGGGA+TGG | - | chr1_4:67173320-67173339 | Msa0179580:intron | 40.0% | |
| TGGCACTGTAACACACAATT+TGG | + | chr1_4:67173391-67173410 | None:intergenic | 40.0% | |
| GCATAAGAACATGCTTCGAA+TGG | - | chr1_4:67173431-67173450 | Msa0179580:intron | 40.0% | |
| ! | AGACCAGTAAGCTAGCTTAT+CGG | - | chr1_4:67173477-67173496 | Msa0179580:CDS | 40.0% |
| ! | TAACCGATAAGCTAGCTTAC+TGG | + | chr1_4:67173483-67173502 | None:intergenic | 40.0% |
| TACCAAACAGAGCCTAAATG+GGG | - | chr1_4:67173514-67173533 | Msa0179580:CDS | 40.0% | |
| GGTTCTCATTCTCCCATTAT+TGG | + | chr1_4:67173559-67173578 | None:intergenic | 40.0% | |
| ! | GAGTTAGCCAGGACAAATTT+TGG | - | chr1_4:67173647-67173666 | Msa0179580:intron | 40.0% |
| ! | GTTAGCCAGGACAAATTTTG+GGG | - | chr1_4:67173649-67173668 | Msa0179580:intron | 40.0% |
| ! | TTAGCCAGGACAAATTTTGG+GGG | - | chr1_4:67173650-67173669 | Msa0179580:intron | 40.0% |
| TTGATCCTTTGGACAGCTAT+TGG | - | chr1_4:67173694-67173713 | Msa0179580:intron | 40.0% | |
| TTGAACCAATAGCTGTCCAA+AGG | + | chr1_4:67173702-67173721 | None:intergenic | 40.0% | |
| GCTTCAAGAAAGAGTTTGAC+GGG | + | chr1_4:67173804-67173823 | None:intergenic | 40.0% | |
| CTCTTTCTTGAAGCTAATCC+AGG | - | chr1_4:67173810-67173829 | Msa0179580:intron | 40.0% | |
| !! | ATGCCTCATGCTTGTTATTC+TGG | - | chr1_4:67173947-67173966 | Msa0179580:intron | 40.0% |
| !! | TGCCTCATGCTTGTTATTCT+GGG | - | chr1_4:67173948-67173967 | Msa0179580:intron | 40.0% |
| TTCCCAGAATAACAAGCATG+AGG | + | chr1_4:67173953-67173972 | None:intergenic | 40.0% | |
| !! | ACTTGAAAATTTGGTGCCAG+TGG | + | chr1_4:67174069-67174088 | None:intergenic | 40.0% |
| TTAACAAGCATCTGCAATGC+AGG | + | chr1_4:67174099-67174118 | None:intergenic | 40.0% | |
| TGTTAATGATTCAGTGGGGA+AGG | - | chr1_4:67174113-67174132 | Msa0179580:intron | 40.0% | |
| GTATGATGAGACTATGAGTG+AGG | - | chr1_4:67174218-67174237 | Msa0179580:intron | 40.0% | |
| ACTTATGTTCCTCCTCAGTT+TGG | - | chr1_4:67174282-67174301 | Msa0179580:intron | 40.0% | |
| TTTCCTCGAATACCAAACTG+AGG | + | chr1_4:67174297-67174316 | None:intergenic | 40.0% | |
| CAGTTTGGTATTCGAGGAAA+TGG | - | chr1_4:67174297-67174316 | Msa0179580:intron | 40.0% | |
| CAGCTGCCAAATATTCAGAT+TGG | - | chr1_4:67174358-67174377 | Msa0179580:intron | 40.0% | |
| AACAGTTCTGTTACTGATGG+AGG | + | chr1_4:67174707-67174726 | None:intergenic | 40.0% | |
| AGCAACAGTTCTGTTACTGA+TGG | + | chr1_4:67174710-67174729 | None:intergenic | 40.0% | |
| !! | AAAGAGAGCATCAAATGGTC+AGG | + | chr1_4:67175233-67175252 | None:intergenic | 40.0% |
| TTGGGATTCAGATGATGAGA+AGG | - | chr1_4:67175411-67175430 | Msa0179580:intron | 40.0% | |
| GGAAGAACACCATCACTTAT+AGG | + | chr1_4:67175484-67175503 | None:intergenic | 40.0% | |
| ! | ATAAGTGATGGTGTTCTTCC+AGG | - | chr1_4:67175484-67175503 | Msa0179580:CDS | 40.0% |
| ! | TAAGTGATGGTGTTCTTCCA+GGG | - | chr1_4:67175485-67175504 | Msa0179580:CDS | 40.0% |
| ACTAGTTGACGTATTATCCC+TGG | + | chr1_4:67175505-67175524 | None:intergenic | 40.0% | |
| GTGTTTGAATTGTCTGCTGA+TGG | - | chr1_4:67175735-67175754 | Msa0179580:intron | 40.0% | |
| TCTATTTGTCAAATCCGGGT+AGG | - | chr1_4:67175883-67175902 | Msa0179580:CDS | 40.0% | |
| GAAAGCAAAAGGCTCTCTTA+TGG | + | chr1_4:67175910-67175929 | None:intergenic | 40.0% | |
| ! | ACAGGTTTTTCTCATGTGAC+TGG | - | chr1_4:67176097-67176116 | Msa0179580:CDS | 40.0% |
| GACATGATTTACACTTGTGC+AGG | - | chr1_4:67176119-67176138 | Msa0179580:CDS | 40.0% | |
| GATGGAGAAACTTCTCGAAA+TGG | + | chr1_4:67176166-67176185 | None:intergenic | 40.0% | |
| TTCGAGAAGTTTCTCCATCA+TGG | - | chr1_4:67176167-67176186 | Msa0179580:CDS | 40.0% | |
| GTCAGAACATGAAATTTGGG+AGG | - | chr1_4:67176189-67176208 | Msa0179580:CDS | 40.0% | |
| ! | TACTTTTCTAGACCACAGTC+TGG | + | chr1_4:67176407-67176426 | None:intergenic | 40.0% |
| TTGGGATCTAATGTCATTCC+AGG | - | chr1_4:67176664-67176683 | Msa0179580:intron | 40.0% | |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1_4:67176716-67176735 | Msa0179580:intron | 40.0% |
| !! | AATCAGCCCATTCTAAAACG+TGG | - | chr1_4:67176740-67176759 | Msa0179580:intron | 40.0% |
| CAATTTGAGTAAATGCAGGG+TGG | - | chr1_4:67176850-67176869 | Msa0179580:intron | 40.0% | |
| TGAAGATCCTACTTCTTTGC+TGG | - | chr1_4:67177360-67177379 | Msa0179580:five_prime_UTR | 40.0% | |
| GAAGATCCTACTTCTTTGCT+GGG | - | chr1_4:67177361-67177380 | Msa0179580:five_prime_UTR | 40.0% | |
| ACCTTATATTTCCCACTCGT+AGG | - | chr1_4:67177393-67177412 | Msa0179580:five_prime_UTR | 40.0% | |
| ACCTACGAGTGGGAAATATA+AGG | + | chr1_4:67177397-67177416 | None:intergenic | 40.0% | |
| TATATTTCCCACTCGTAGGT+TGG | - | chr1_4:67177397-67177416 | Msa0179580:five_prime_UTR | 40.0% | |
| AATTCTTAGACCACCTCCAA+AGG | - | chr1_4:67177565-67177584 | Msa0179580:five_prime_UTR | 40.0% | |
| AACAACATGACAAGCACCTT+TGG | + | chr1_4:67177584-67177603 | None:intergenic | 40.0% | |
| ! | CTGGAAGTGGATTCAGCTTT+GGG | + | chr1_4:67172779-67172798 | None:intergenic | 45.0% |
| TCTGATTCAACTCCAAAGCC+TGG | + | chr1_4:67172798-67172817 | None:intergenic | 45.0% | |
| GTAACTCAGCTAAAGCTTCC+CGG | - | chr1_4:67172838-67172857 | Msa0179580:three_prime_UTR | 45.0% | |
| TAACTCAGCTAAAGCTTCCC+GGG | - | chr1_4:67172839-67172858 | Msa0179580:three_prime_UTR | 45.0% | |
| !! | GTTTCTAGCTGTGTTTCTGC+CGG | + | chr1_4:67172890-67172909 | None:intergenic | 45.0% |
| ACCAAACAGAGCCTAAATGG+GGG | - | chr1_4:67173515-67173534 | Msa0179580:CDS | 45.0% | |
| ! | TAGCCAGGACAAATTTTGGG+GGG | - | chr1_4:67173651-67173670 | Msa0179580:intron | 45.0% |
| !! | AGGACAAATTTTGGGGGGAA+CGG | - | chr1_4:67173656-67173675 | Msa0179580:intron | 45.0% |
| TCAAGAAAGAGTTTGACGGG+AGG | + | chr1_4:67173801-67173820 | None:intergenic | 45.0% | |
| ACCCTCTCTTTCAATGCGAT+GGG | + | chr1_4:67174144-67174163 | None:intergenic | 45.0% | |
| TCGAGGAAATGGTGCACATT+TGG | - | chr1_4:67174308-67174327 | Msa0179580:intron | 45.0% | |
| ATGCAGGATTAGGAAGACTC+TGG | - | chr1_4:67174670-67174689 | Msa0179580:intron | 45.0% | |
| TGTTGCCTAACACCTAAACG+TGG | - | chr1_4:67174926-67174945 | Msa0179580:intron | 45.0% | |
| TCCAACCACGTTTAGGTGTT+AGG | + | chr1_4:67174934-67174953 | None:intergenic | 45.0% | |
| TGGACAATCCAACCACGTTT+AGG | + | chr1_4:67174941-67174960 | None:intergenic | 45.0% | |
| CAGACAGCTCCTATAAGTGA+TGG | - | chr1_4:67175472-67175491 | Msa0179580:CDS | 45.0% | |
| CGTCAACTAGTGCTTGAGTA+TGG | - | chr1_4:67175514-67175533 | Msa0179580:CDS | 45.0% | |
| ! | GAAAGGGCATAGTTCCTTTG+TGG | + | chr1_4:67175584-67175603 | None:intergenic | 45.0% |
| ATTAAGTCACCACCAGACTG+TGG | - | chr1_4:67176392-67176411 | Msa0179580:intron | 45.0% | |
| ! | TTTTCTAGACCACAGTCTGG+TGG | + | chr1_4:67176404-67176423 | None:intergenic | 45.0% |
| ATGTCATTCCAGGTAGCTTG+AGG | - | chr1_4:67176674-67176693 | Msa0179580:intron | 45.0% | |
| !! | AGCCCATTCTAAAACGTGGA+AGG | - | chr1_4:67176744-67176763 | Msa0179580:intron | 45.0% |
| ! | TTTTGAATTGGGATTGGGGG+AGG | - | chr1_4:67176925-67176944 | Msa0179580:intron | 45.0% |
| TTTGAATTGGGATTGGGGGA+GGG | - | chr1_4:67176926-67176945 | Msa0179580:intron | 45.0% | |
| TCTTAAACGCACGTTCATGG+TGG | + | chr1_4:67177129-67177148 | None:intergenic | 45.0% | |
| ATGTGTACTGAACGTGCGTT+TGG | + | chr1_4:67177199-67177218 | None:intergenic | 45.0% | |
| !! | TGACTTGGTGCCTGTTTGTT+TGG | + | chr1_4:67177228-67177247 | None:intergenic | 45.0% |
| CTACATCCCAGCAAAGAAGT+AGG | + | chr1_4:67177370-67177389 | None:intergenic | 45.0% | |
| AACATGACAAGCACCTTTGG+AGG | + | chr1_4:67177581-67177600 | None:intergenic | 45.0% | |
| !!! | TAATTTATTTCTATAATTTT+TGG | + | chr1_4:67176034-67176053 | None:intergenic | 5.0% |
| !! | ATATTATTAATATACAATAA+TGG | + | chr1_4:67177651-67177670 | None:intergenic | 5.0% |
| ! | CCTGGAAGTGGATTCAGCTT+TGG | + | chr1_4:67172780-67172799 | None:intergenic | 50.0% |
| CCAAAGCTGAATCCACTTCC+AGG | - | chr1_4:67172777-67172796 | Msa0179580:three_prime_UTR | 50.0% | |
| CTGAATCCACTTCCAGGCTT+TGG | - | chr1_4:67172783-67172802 | Msa0179580:three_prime_UTR | 50.0% | |
| TCAACTCCAAAGCCTGGAAG+TGG | + | chr1_4:67172792-67172811 | None:intergenic | 50.0% | |
| TGCTTCGAATGGGGTCATCA+AGG | - | chr1_4:67173442-67173461 | Msa0179580:intron | 50.0% | |
| GCTTCGAATGGGGTCATCAA+GGG | - | chr1_4:67173443-67173462 | Msa0179580:intron | 50.0% | |
| CCAAACAGAGCCTAAATGGG+GGG | - | chr1_4:67173516-67173535 | Msa0179580:CDS | 50.0% | |
| CAAGCTTGATCCCCCCATTT+AGG | + | chr1_4:67173529-67173548 | None:intergenic | 50.0% | |
| GGCTAACTCTCTTCAACGAC+AGG | + | chr1_4:67173636-67173655 | None:intergenic | 50.0% | |
| GTCGTTGAAGAGAGTTAGCC+AGG | - | chr1_4:67173636-67173655 | Msa0179580:intron | 50.0% | |
| GTTCCCCCCAAAATTTGTCC+TGG | + | chr1_4:67173657-67173676 | None:intergenic | 50.0% | |
| !! | CAAATTTTGGGGGGAACGGT+CGG | - | chr1_4:67173660-67173679 | Msa0179580:intron | 50.0% |
| !! | TCCTGGTTTGTTTCTGGTCC+AGG | - | chr1_4:67173895-67173914 | Msa0179580:intron | 50.0% |
| ACCTGGACCAGAAACAAACC+AGG | + | chr1_4:67173899-67173918 | None:intergenic | 50.0% | |
| TGCCCATCGCATTGAAAGAG+AGG | - | chr1_4:67174139-67174158 | Msa0179580:intron | 50.0% | |
| GCCCATCGCATTGAAAGAGA+GGG | - | chr1_4:67174140-67174159 | Msa0179580:intron | 50.0% | |
| GACCCTCTCTTTCAATGCGA+TGG | + | chr1_4:67174145-67174164 | None:intergenic | 50.0% | |
| ! | GAAAGAGAGGGTCGATTCCA+AGG | - | chr1_4:67174152-67174171 | Msa0179580:intron | 50.0% |
| AGTTGTAATGGCCAGCTCCT+TGG | + | chr1_4:67174172-67174191 | None:intergenic | 50.0% | |
| CCTCGAATACCAAACTGAGG+AGG | + | chr1_4:67174294-67174313 | None:intergenic | 50.0% | |
| CCTCCTCAGTTTGGTATTCG+AGG | - | chr1_4:67174291-67174310 | Msa0179580:intron | 50.0% | |
| TGGTGCACATTTGGCTGTTG+CGG | - | chr1_4:67174317-67174336 | Msa0179580:intron | 50.0% | |
| ! | ATTTGGCTGTTGCGGGCTAT+GGG | - | chr1_4:67174325-67174344 | Msa0179580:intron | 50.0% |
| ACATCAGCACTACAAGCAGC+AGG | + | chr1_4:67174616-67174635 | None:intergenic | 50.0% | |
| GCCTAACACCTAAACGTGGT+TGG | - | chr1_4:67174930-67174949 | Msa0179580:intron | 50.0% | |
| GAGAAGGCTCCATGTGATCA+TGG | - | chr1_4:67175427-67175446 | Msa0179580:intron | 50.0% | |
| TACACTTGTGCAGGGTATGC+AGG | - | chr1_4:67176128-67176147 | Msa0179580:CDS | 50.0% | |
| ACACTTGTGCAGGGTATGCA+GGG | - | chr1_4:67176129-67176148 | Msa0179580:CDS | 50.0% | |
| TGCAAAAGCCTCAAGCTACC+TGG | + | chr1_4:67176685-67176704 | None:intergenic | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1_4:67176730-67176749 | None:intergenic | 50.0% | |
| AGTAAATGCAGGGTGGACCT+GGG | - | chr1_4:67176857-67176876 | Msa0179580:intron | 50.0% | |
| CGCTCTTAAACGCACGTTCA+TGG | + | chr1_4:67177132-67177151 | None:intergenic | 50.0% | |
| !! | ACGTGCGTTTAAGAGCGCTT+TGG | - | chr1_4:67177135-67177154 | Msa0179580:intron | 50.0% |
| ACATCCACCGCCAAACAAAC+AGG | - | chr1_4:67177215-67177234 | Msa0179580:intron | 50.0% | |
| !! | CTTGGTGCCTGTTTGTTTGG+CGG | + | chr1_4:67177225-67177244 | None:intergenic | 50.0% |
| ! | ATGACAAGCACCTTTGGAGG+TGG | + | chr1_4:67177578-67177597 | None:intergenic | 50.0% |
| AAACTCCGATCGCGTTTCCC+GGG | + | chr1_4:67172859-67172878 | None:intergenic | 55.0% | |
| GAAACTCCGATCGCGTTTCC+CGG | + | chr1_4:67172860-67172879 | None:intergenic | 55.0% | |
| ACGCGATCGGAGTTTCTCGT+CGG | - | chr1_4:67172864-67172883 | Msa0179580:three_prime_UTR | 55.0% | |
| ACACAGCTAGAAACGCGTCC+AGG | - | chr1_4:67172896-67172915 | Msa0179580:CDS | 55.0% | |
| GGGGTCATCAAGGGTCTGTT+TGG | - | chr1_4:67173452-67173471 | Msa0179580:intron | 55.0% | |
| CCCCCCATTTAGGCTCTGTT+TGG | + | chr1_4:67173519-67173538 | None:intergenic | 55.0% | |
| CGTGATGTCGTGTAAGCACC+TGG | + | chr1_4:67173916-67173935 | None:intergenic | 55.0% | |
| GGTGCACATTTGGCTGTTGC+GGG | - | chr1_4:67174318-67174337 | Msa0179580:intron | 55.0% | |
| ! | CATTTGGCTGTTGCGGGCTA+TGG | - | chr1_4:67174324-67174343 | Msa0179580:intron | 55.0% |
| GGCTCTCTTATGGACCTACC+CGG | + | chr1_4:67175900-67175919 | None:intergenic | 55.0% | |
| TGCAGGGTATGCAGGGATGA+AGG | - | chr1_4:67176136-67176155 | Msa0179580:CDS | 55.0% | |
| GAGTAAATGCAGGGTGGACC+TGG | - | chr1_4:67176856-67176875 | Msa0179580:intron | 55.0% | |
| ACGAGTCACGAGTGACTGGG+AGG | + | chr1_4:67172596-67172615 | None:intergenic | 60.0% | |
| CGCACGAGTCACGAGTGACT+GGG | + | chr1_4:67172599-67172618 | None:intergenic | 60.0% | |
| ACGCACGAGTCACGAGTGAC+TGG | + | chr1_4:67172600-67172619 | None:intergenic | 60.0% | |
| AGCTTCCCGGGAAACGCGAT+CGG | - | chr1_4:67172851-67172870 | Msa0179580:three_prime_UTR | 60.0% | |
| GATCGGAGTTTCTCGTCGGC+CGG | - | chr1_4:67172868-67172887 | Msa0179580:three_prime_UTR | 60.0% | |
| TGCTGCAAGTGTGCTGCCAC+TGG | - | chr1_4:67174050-67174069 | Msa0179580:CDS | 60.0% | |
| ! | GAGGGTCGATTCCAAGGAGC+TGG | - | chr1_4:67174158-67174177 | Msa0179580:intron | 60.0% |
| GGTGCCTGTTTGTTTGGCGG+TGG | + | chr1_4:67177222-67177241 | None:intergenic | 60.0% | |
| ! | TGGCTGTTGCGGGCTATGGG+AGG | - | chr1_4:67174328-67174347 | Msa0179580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67172559 | 67177697 | 67172559 | ID=Msa0179580;Name=Msa0179580 |
| chr1_4 | mRNA | 67172559 | 67177697 | 67172559 | ID=Msa0179580-mRNA-1;Parent=Msa0179580;Name=Msa0179580-mRNA-1;_AED=0.24;_eAED=0.24;_QI=483|0.87|0.88|1|0.87|0.77|9|335|366 |
| chr1_4 | exon | 67172559 | 67172956 | 67172559 | ID=Msa0179580-mRNA-1:exon:22091;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67173356 | 67173388 | 67173356 | ID=Msa0179580-mRNA-1:exon:22090;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67173461 | 67173570 | 67173461 | ID=Msa0179580-mRNA-1:exon:22089;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67174030 | 67174115 | 67174030 | ID=Msa0179580-mRNA-1:exon:22088;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67174717 | 67174847 | 67174717 | ID=Msa0179580-mRNA-1:exon:22087;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67175463 | 67175580 | 67175463 | ID=Msa0179580-mRNA-1:exon:22086;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67175871 | 67176339 | 67175871 | ID=Msa0179580-mRNA-1:exon:22085;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67176425 | 67176639 | 67176425 | ID=Msa0179580-mRNA-1:exon:22084;Parent=Msa0179580-mRNA-1 |
| chr1_4 | exon | 67177339 | 67177697 | 67177339 | ID=Msa0179580-mRNA-1:exon:22083;Parent=Msa0179580-mRNA-1 |
| chr1_4 | five_prime_UTR | 67177339 | 67177697 | 67177339 | ID=Msa0179580-mRNA-1:five_prime_utr;Parent=Msa0179580-mRNA-1 |
| chr1_4 | five_prime_UTR | 67176516 | 67176639 | 67176516 | ID=Msa0179580-mRNA-1:five_prime_utr;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67176425 | 67176515 | 67176425 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67175871 | 67176339 | 67175871 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67175463 | 67175580 | 67175463 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67174717 | 67174847 | 67174717 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67174030 | 67174115 | 67174030 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67173461 | 67173570 | 67173461 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67173356 | 67173388 | 67173356 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | CDS | 67172894 | 67172956 | 67172894 | ID=Msa0179580-mRNA-1:cds;Parent=Msa0179580-mRNA-1 |
| chr1_4 | three_prime_UTR | 67172559 | 67172893 | 67172559 | ID=Msa0179580-mRNA-1:three_prime_utr;Parent=Msa0179580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
