AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0458060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458060 MtrunA17_Chr3g0107911 98.148 270 4 1 1 270 1 269 0.0 540
Msa0458060 MtrunA17_Chr5g0432801 83.942 274 39 3 1 269 1 274 2.08e-147 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458060 AT5G20920.3 75.000 268 62 5 1 265 1 266 2.35e-131 373
Msa0458060 AT5G20920.1 75.000 268 62 5 1 265 1 266 2.35e-131 373
Msa0458060 AT5G20920.2 75.000 268 61 6 1 265 1 265 5.19e-130 369
Msa0458060 AT3G07920.1 70.395 152 37 2 118 265 17 164 1.03e-70 215
Msa0458060 AT5G01940.2 57.042 142 56 3 114 254 72 209 6.37e-49 161
Msa0458060 AT5G01940.3 57.042 142 56 3 114 254 104 241 9.27e-49 162
Msa0458060 AT5G01940.1 53.846 156 63 4 114 262 72 225 1.01e-46 156

Find 77 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTTGCTTGCGGAAC+TGG 0.130326 3_3:-53342393 Msa0458060:CDS
AAAATTCCTTCGAAGTTCTT+TGG 0.281091 3_3:+53342314 None:intergenic
CGTCGGTCTCCAGCAAGTTC+TGG 0.286919 3_3:+53342842 None:intergenic
AGTCGGTTAAATAAGATAAC+TGG 0.326850 3_3:-53341299 Msa0458060:three_prime_UTR
AGAAGCGAAACGCAACGTTT+TGG 0.358855 3_3:-53345513 Msa0458060:five_prime_UTR
TCCTTTGACAGTATTGTGTC+AGG 0.386643 3_3:+53342159 None:intergenic
CCTTGCAACCTCGTTACCCT+TGG 0.397283 3_3:-53343480 Msa0458060:CDS
GAGAATAATCCAGAACTTGC+TGG 0.427102 3_3:-53342851 Msa0458060:CDS
TTAATTTACATGTGAAAACT+AGG 0.443687 3_3:-53341434 Msa0458060:three_prime_UTR
GATGAATATGTCATTTGCCT+TGG 0.446437 3_3:-53342192 Msa0458060:CDS
GGGTTTGACAGTACTTTAGC+TGG 0.446946 3_3:-53343846 Msa0458060:CDS
GCAACAAAACCAGCCTTGAT+AGG 0.448200 3_3:+53341517 None:intergenic
GTTCTTTCTCCGGTGTGAAA+AGG 0.449900 3_3:-53342127 Msa0458060:intron
CATGTAGGTCAAGCAAAAGT+TGG 0.450106 3_3:+53341395 None:intergenic
AGAGCGGAGCGAGAGAAATC+TGG 0.450896 3_3:+53345425 None:intergenic
AAGAAAGCCATGACATGATC+TGG 0.453989 3_3:+53342407 None:intergenic
GGTACAAGTGGTTCTCTAGA+TGG 0.461160 3_3:-53342371 Msa0458060:CDS
ACTGTGTCTGATGATGCTAT+TGG 0.463091 3_3:+53345469 None:intergenic
CTTGCAACCTCGTTACCCTT+GGG 0.463993 3_3:-53343479 Msa0458060:CDS
GTCAAGCAAAAGTTGGGAAA+TGG 0.465103 3_3:+53341402 None:intergenic
CGTGTTGGCCGTAGGACTGC+GGG 0.465591 3_3:-53341493 Msa0458060:CDS
TCTAGATGGACAGCAGAGAT+TGG 0.466810 3_3:-53342357 Msa0458060:CDS
TATTGCTTGCAGTGTGGATC+AGG 0.472397 3_3:-53341553 Msa0458060:intron
GCTTTCTTGCTTGCGGAACT+GGG 0.492020 3_3:-53342392 Msa0458060:CDS
AAGATCAGTTGCACCTATCA+AGG 0.492968 3_3:-53341530 Msa0458060:CDS
TGTCATGGCTTTCTTGCTTG+CGG 0.497308 3_3:-53342399 Msa0458060:CDS
AGAACCGTTTGTTCTTTCTC+CGG 0.497985 3_3:-53342137 Msa0458060:CDS
GTGCCCTCACGAAGCACTTG+TGG 0.500600 3_3:+53342800 None:intergenic
CACACCGGAGAAAGAACAAA+CGG 0.501705 3_3:+53342133 None:intergenic
TAATTTACATGTGAAAACTA+GGG 0.505394 3_3:-53341433 Msa0458060:three_prime_UTR
TTGTTGCTCGTGTTGGCCGT+AGG 0.510944 3_3:-53341501 Msa0458060:CDS
TCAGTTGCACCTATCAAGGC+TGG 0.525265 3_3:-53341526 Msa0458060:CDS
ATGTAGGTCAAGCAAAAGTT+GGG 0.525415 3_3:+53341396 None:intergenic
ATGTCCCTCCCGCAGTCCTA+CGG 0.525965 3_3:+53341485 None:intergenic
GATCATGCTGAAGAGAATGA+AGG 0.536109 3_3:-53343514 Msa0458060:CDS
AGAGATTGGTTGTGAAGGGA+AGG 0.537518 3_3:-53342343 Msa0458060:CDS
ATCATGCTGAAGAGAATGAA+GGG 0.539765 3_3:-53343513 Msa0458060:CDS
TTACATGTTGATCTTTGAGT+CGG 0.541633 3_3:-53341316 Msa0458060:three_prime_UTR
TCCTGACACAATACTGTCAA+AGG 0.542246 3_3:-53342160 Msa0458060:CDS
CAGCAGAGATTGGTTGTGAA+GGG 0.544525 3_3:-53342347 Msa0458060:CDS
TCATCAAGATCTACCACTGC+GGG 0.548138 3_3:+53344052 None:intergenic
ACCGACGGAGAACTGTTATG+AGG 0.549889 3_3:-53342826 Msa0458060:CDS
TGAAGCACAGATTGATGTGA+AGG 0.549994 3_3:-53344367 Msa0458060:CDS
CAATAAACTCAGCTGAAGTA+CGG 0.559028 3_3:+53341365 None:intergenic
CCCTCACGAAGCACTTGTGG+AGG 0.572134 3_3:+53342803 None:intergenic
ACAGATTGATGTGAAGGAAG+AGG 0.574813 3_3:-53344361 Msa0458060:CDS
GAGAAGACAGAAAATCTGTC+GGG 0.576064 3_3:-53344007 Msa0458060:intron
TCGTGTTGGCCGTAGGACTG+CGG 0.579876 3_3:-53341494 Msa0458060:CDS
TAACCGATCGAAGGAGAGAG+CGG 0.584152 3_3:+53345409 None:intergenic
GCCTCCACAAGTGCTTCGTG+AGG 0.584535 3_3:-53342804 Msa0458060:CDS
ACAGCAGAGATTGGTTGTGA+AGG 0.584946 3_3:-53342348 Msa0458060:CDS
TGCTTAGGTTTCAGTAACCA+TGG 0.585520 3_3:-53344394 Msa0458060:intron
CTTGCGGAACTGGGTACAAG+TGG 0.589169 3_3:-53342383 Msa0458060:CDS
CACGATCACTTCCTTCCCAA+GGG 0.589285 3_3:+53343464 None:intergenic
GCCTCATAACAGTTCTCCGT+CGG 0.590654 3_3:+53342825 None:intergenic
CAACCTCGTTACCCTTGGGA+AGG 0.592495 3_3:-53343475 Msa0458060:CDS
GCTCCGCTCTCTCCTTCGAT+CGG 0.592497 3_3:-53345412 Msa0458060:five_prime_UTR
TTTGCACCAAAGAACTTCGA+AGG 0.593663 3_3:-53342320 Msa0458060:CDS
TCACGATCACTTCCTTCCCA+AGG 0.596987 3_3:+53343463 None:intergenic
AATCTGTGCTTCATCTGCCA+TGG 0.597125 3_3:+53344377 None:intergenic
CCAAGGGTAACGAGGTTGCA+AGG 0.598454 3_3:+53343480 None:intergenic
AATTTACATGTGAAAACTAG+GGG 0.598512 3_3:-53341432 Msa0458060:three_prime_UTR
TGAGAAGACAGAAAATCTGT+CGG 0.602216 3_3:-53344008 Msa0458060:CDS
TGATGATTCAGTAGACAAGT+TGG 0.613548 3_3:-53344032 Msa0458060:CDS
CTTCCTTCCCAAGGGTAACG+AGG 0.616919 3_3:+53343472 None:intergenic
CCTCCACAAGTGCTTCGTGA+GGG 0.624335 3_3:-53342803 Msa0458060:CDS
CAGAACTTGCTGGAGACCGA+CGG 0.631347 3_3:-53342841 Msa0458060:CDS
GTCTGATGATGCTATTGGAA+CGG 0.632784 3_3:+53345474 None:intergenic
AAGTACGGTATACAACATGT+AGG 0.642394 3_3:+53341380 None:intergenic
TCATGCTGAAGAGAATGAAG+GGG 0.642946 3_3:-53343512 Msa0458060:CDS
GTTGGCCGTAGGACTGCGGG+AGG 0.652534 3_3:-53341490 Msa0458060:CDS
TCGGCAGCCAGATCATGTCA+TGG 0.653346 3_3:-53342414 Msa0458060:CDS
CATACGAGTTAACCGATCGA+AGG 0.671598 3_3:+53345400 None:intergenic
TGATCGTGATTATCAATACG+AGG 0.718816 3_3:-53343449 Msa0458060:CDS
ATCATCAAGATCTACCACTG+CGG 0.727185 3_3:+53344051 None:intergenic
TTGGCCGTAGGACTGCGGGA+GGG 0.729821 3_3:-53341489 Msa0458060:CDS
TCGTGATTATCAATACGAGG+AGG 0.739399 3_3:-53343446 Msa0458060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTTATATTATTTA+CGG - chr3_3:53341731-53341750 Msa0458060:intron 0.0%
!!! ATTAAAAAAAATCGATTTTA+GGG + chr3_3:53341411-53341430 None:intergenic 10.0%
!!! AATTAAAAAAAATCGATTTT+AGG + chr3_3:53341412-53341431 None:intergenic 10.0%
!! TTTATAAGCTTAAAAATCAT+GGG + chr3_3:53341540-53341559 None:intergenic 15.0%
!! TAAATCAATAATCAAAATCA+AGG + chr3_3:53341762-53341781 None:intergenic 15.0%
!!! TATTTTATGCTATTAAGTTT+TGG - chr3_3:53342815-53342834 Msa0458060:CDS 15.0%
!!! ATATTTTTATTGTTGATTGT+AGG - chr3_3:53343083-53343102 Msa0458060:intron 15.0%
!!! ATATTTTGGAATTTTTAACA+TGG - chr3_3:53343565-53343584 Msa0458060:intron 15.0%
!! CTAAAAAGAACAAAATATAT+AGG + chr3_3:53344556-53344575 None:intergenic 15.0%
!! TATAAGAGAAACTATTAAAA+AGG + chr3_3:53344867-53344886 None:intergenic 15.0%
!! AAAATATCATTGAAATTGTT+CGG + chr3_3:53345075-53345094 None:intergenic 15.0%
!! CATGTAAATTAAAAAAAGAA+AGG + chr3_3:53345325-53345344 None:intergenic 15.0%
!! TTATAAGCTTAAAAATCATG+GGG + chr3_3:53341539-53341558 None:intergenic 20.0%
!! CTTTATAAGCTTAAAAATCA+TGG + chr3_3:53341541-53341560 None:intergenic 20.0%
!!! GTTTTCGCTAATTAATTAAT+CGG - chr3_3:53341576-53341595 Msa0458060:intron 20.0%
!!! TTTTCGCTAATTAATTAATC+GGG - chr3_3:53341577-53341596 Msa0458060:intron 20.0%
!!! TTAATTAATCGGGTTTTTTT+AGG - chr3_3:53341587-53341606 Msa0458060:intron 20.0%
!!! TAATTAATCGGGTTTTTTTA+GGG - chr3_3:53341588-53341607 Msa0458060:intron 20.0%
!!! TTTTTCTTCTCAATTGTTAT+TGG - chr3_3:53341637-53341656 Msa0458060:intron 20.0%
!!! TTTTCTTCTCAATTGTTATT+GGG - chr3_3:53341638-53341657 Msa0458060:intron 20.0%
!!! ATTATTGATTTAGCTTTGTT+TGG - chr3_3:53341770-53341789 Msa0458060:intron 20.0%
!!! AGTATCGTATTTTATTATCT+AGG - chr3_3:53342162-53342181 Msa0458060:CDS 20.0%
!!! TTTTTCTTCTTCTTTTTAGT+AGG + chr3_3:53342691-53342710 None:intergenic 20.0%
!! TTAATTTCCCTTAAGAATTA+AGG + chr3_3:53343199-53343218 None:intergenic 20.0%
!! AATTCTTAAGGGAAATTAAT+TGG - chr3_3:53343200-53343219 Msa0458060:intron 20.0%
!!! TTTATGCTACTTTTCATATT+TGG - chr3_3:53343466-53343485 Msa0458060:CDS 20.0%
!!! AGGTAGTATTTGTTTATTTT+TGG - chr3_3:53343817-53343836 Msa0458060:intron 20.0%
!!! AACTGTTTTTGTGAATTTTA+TGG - chr3_3:53343996-53344015 Msa0458060:intron 20.0%
!! GTAATTTATTATTCAGTTGT+TGG - chr3_3:53344044-53344063 Msa0458060:CDS 20.0%
!! GTAGTTATTTGAGAAAATTA+GGG + chr3_3:53344181-53344200 None:intergenic 20.0%
!! TGTAGTTATTTGAGAAAATT+AGG + chr3_3:53344182-53344201 None:intergenic 20.0%
!!! GATTTTAATGCAATATAGAA+AGG + chr3_3:53344273-53344292 None:intergenic 20.0%
!! AGACATAAACAAAATGATAA+TGG + chr3_3:53344309-53344328 None:intergenic 20.0%
!! GTTATCAATTTCTTAATTTC+AGG + chr3_3:53344745-53344764 None:intergenic 20.0%
!!! GATTTGAAATATTCAACTTA+AGG + chr3_3:53344963-53344982 None:intergenic 20.0%
!!! CTTTATTTCCTTAAATTGTA+GGG + chr3_3:53345132-53345151 None:intergenic 20.0%
!! TACAATTTAAGGAAATAAAG+CGG - chr3_3:53345132-53345151 Msa0458060:intron 20.0%
!!! TATCTTTTACTTTATGATGA+TGG - chr3_3:53345171-53345190 Msa0458060:intron 20.0%
!!! ATCTTTTACTTTATGATGAT+GGG - chr3_3:53345172-53345191 Msa0458060:intron 20.0%
!! TTAATTTACATGTGAAAACT+AGG - chr3_3:53345333-53345352 Msa0458060:intron 20.0%
!! TAATTTACATGTGAAAACTA+GGG - chr3_3:53345334-53345353 Msa0458060:intron 20.0%
!! CAACTCAGATTAAAAATAAA+TGG + chr3_3:53345499-53345518 None:intergenic 20.0%
! TCAAATTGGGTAATCAAAAA+GGG + chr3_3:53341450-53341469 None:intergenic 25.0%
! ATCAAATTGGGTAATCAAAA+AGG + chr3_3:53341451-53341470 None:intergenic 25.0%
! CACGAAAAACAAATCAAATT+GGG + chr3_3:53341463-53341482 None:intergenic 25.0%
! ACACGAAAAACAAATCAAAT+TGG + chr3_3:53341464-53341483 None:intergenic 25.0%
! CATAACATAAACACTTATCA+TGG + chr3_3:53341835-53341854 None:intergenic 25.0%
!! ATTGGCTTATTTGAACTTAT+TGG + chr3_3:53342038-53342057 None:intergenic 25.0%
! CACAGATAGTAATAAACTAA+GGG + chr3_3:53342070-53342089 None:intergenic 25.0%
! TATAATATTTGTCGAAGATG+TGG + chr3_3:53342325-53342344 None:intergenic 25.0%
!!! TTTCTAGTTTTGTTTTGCTT+AGG - chr3_3:53342358-53342377 Msa0458060:CDS 25.0%
!!! TAAGTTTGCACAATTGATTT+TGG - chr3_3:53342438-53342457 Msa0458060:intron 25.0%
!!! ATTTTGGTAGTTTTATGCAT+TGG - chr3_3:53342454-53342473 Msa0458060:intron 25.0%
!!! TTCAAATCTCTTTGATTTGT+TGG - chr3_3:53342594-53342613 Msa0458060:intron 25.0%
!!! TTCTTTTTAGTAGGATCAAA+TGG + chr3_3:53342682-53342701 None:intergenic 25.0%
!!! GTCTTTAATGTTATTTTCTG+AGG - chr3_3:53342837-53342856 Msa0458060:CDS 25.0%
! TATAAATTGTGTTTGAGAGT+TGG + chr3_3:53343171-53343190 None:intergenic 25.0%
! ATATCATGCCTTAATTCTTA+AGG - chr3_3:53343188-53343207 Msa0458060:intron 25.0%
! TATCATGCCTTAATTCTTAA+GGG - chr3_3:53343189-53343208 Msa0458060:intron 25.0%
! ATTCAGTTGAGAAACATTTA+TGG + chr3_3:53343440-53343459 None:intergenic 25.0%
!! TACTTTTCATATTTGGATAG+TGG - chr3_3:53343473-53343492 Msa0458060:CDS 25.0%
! ATATAAACACATATTTGAGG+AGG + chr3_3:53343618-53343637 None:intergenic 25.0%
! TCCTCAAATATGTGTTTATA+TGG - chr3_3:53343617-53343636 Msa0458060:intron 25.0%
! TCCATATAAACACATATTTG+AGG + chr3_3:53343621-53343640 None:intergenic 25.0%
! ATATATCATGAAGCTATTGT+TGG + chr3_3:53343724-53343743 None:intergenic 25.0%
!!! TGTTTTTTGATAGAACACTA+TGG + chr3_3:53344815-53344834 None:intergenic 25.0%
!!! AATTTGAAACATTTTCCTAC+AGG + chr3_3:53344929-53344948 None:intergenic 25.0%
!! CTTTCATAAGCAATTTTTCA+TGG + chr3_3:53344994-53345013 None:intergenic 25.0%
!! CAGTCTCTAAAAACATATTA+CGG + chr3_3:53345098-53345117 None:intergenic 25.0%
!!! GCTTTATTTCCTTAAATTGT+AGG + chr3_3:53345133-53345152 None:intergenic 25.0%
! ACAATTTAAGGAAATAAAGC+GGG - chr3_3:53345133-53345152 Msa0458060:intron 25.0%
! AATTTACATGTGAAAACTAG+GGG - chr3_3:53345335-53345354 Msa0458060:intron 25.0%
!! AGTTTATTGCAGTACATTTT+TGG - chr3_3:53345416-53345435 Msa0458060:five_prime_UTR 25.0%
!!! TTTTTAATCTGAGTTGAATC+AGG - chr3_3:53345503-53345522 Msa0458060:five_prime_UTR 25.0%
CAAATTGGGTAATCAAAAAG+GGG + chr3_3:53341449-53341468 None:intergenic 30.0%
!! AGCAAAGAATCTCTTTGTTT+TGG - chr3_3:53341685-53341704 Msa0458060:intron 30.0%
!!! ATCTCTTTGTTTTGGCTATA+AGG - chr3_3:53341693-53341712 Msa0458060:intron 30.0%
!!! TCTCTTTGTTTTGGCTATAA+GGG - chr3_3:53341694-53341713 Msa0458060:intron 30.0%
GCACAGATAGTAATAAACTA+AGG + chr3_3:53342071-53342090 None:intergenic 30.0%
! CTTCATTCTTTCTATGCTTT+TGG - chr3_3:53342098-53342117 Msa0458060:intron 30.0%
!! TTAGTCTTTTGTATCAAGTC+AGG - chr3_3:53342236-53342255 Msa0458060:intron 30.0%
! GTGACTGGTTATAACTTATA+AGG - chr3_3:53342497-53342516 Msa0458060:intron 30.0%
! TAGTGACTTGTATTCTTAGT+TGG - chr3_3:53342568-53342587 Msa0458060:intron 30.0%
AATCTGCAATTAACAAATCC+AGG + chr3_3:53342656-53342675 None:intergenic 30.0%
AATTAGAATTGTTCAAGGAC+AGG + chr3_3:53342877-53342896 None:intergenic 30.0%
AGGCTAATTAGAATTGTTCA+AGG + chr3_3:53342882-53342901 None:intergenic 30.0%
CAATAATTCAAATGACCTAC+AGG + chr3_3:53342969-53342988 None:intergenic 30.0%
GTAGGTCATTTGAATTATTG+TGG - chr3_3:53342969-53342988 Msa0458060:intron 30.0%
! AATTTTACACCGCATTTCAA+GGG + chr3_3:53343387-53343406 None:intergenic 30.0%
! TAATTTTACACCGCATTTCA+AGG + chr3_3:53343388-53343407 None:intergenic 30.0%
TGAGAAACATTTATGGAACT+AGG + chr3_3:53343433-53343452 None:intergenic 30.0%
!!! TGTCGCCATATTAGTTTTAT+AGG - chr3_3:53343518-53343537 Msa0458060:intron 30.0%
CACAGCCTATAAAACTAATA+TGG + chr3_3:53343526-53343545 None:intergenic 30.0%
!!! TAGTTTTATAGGCTGTGTTT+TGG - chr3_3:53343529-53343548 Msa0458060:intron 30.0%
!! AGTTTTATAGGCTGTGTTTT+GGG - chr3_3:53343530-53343549 Msa0458060:intron 30.0%
TTGAGTCGTTGTTGTATTAT+TGG - chr3_3:53343688-53343707 Msa0458060:intron 30.0%
! GCATTTTCTTCTGTTATCAT+AGG - chr3_3:53343797-53343816 Msa0458060:intron 30.0%
! AATCAACATACGTTTTGCAA+AGG + chr3_3:53344023-53344042 None:intergenic 30.0%
GCTACATGTATAATACATGT+AGG - chr3_3:53344066-53344085 Msa0458060:CDS 30.0%
!! TACATGTAGGCATGTTTTTA+TGG - chr3_3:53344079-53344098 Msa0458060:CDS 30.0%
! AAACCTAAACGCATTTTCTT+AGG - chr3_3:53344105-53344124 Msa0458060:intron 30.0%
!! TGATAATGGAAGACAAAAGT+AGG + chr3_3:53344295-53344314 None:intergenic 30.0%
AAAATTCCTTCGAAGTTCTT+TGG + chr3_3:53344456-53344475 None:intergenic 30.0%
ATATATCAGTAAGTATCTCG+TGG - chr3_3:53344482-53344501 Msa0458060:intron 30.0%
! ATAGGTCAATTTTTACTCGA+AGG + chr3_3:53344538-53344557 None:intergenic 30.0%
GTTTCTCTTATAGTCTTTCT+AGG - chr3_3:53344875-53344894 Msa0458060:intron 30.0%
! GCAATTTTTCATGGATCAAT+TGG + chr3_3:53344985-53345004 None:intergenic 30.0%
TAACATCACCCTACAATTTA+AGG - chr3_3:53345121-53345140 Msa0458060:intron 30.0%
CAATTTAAGGAAATAAAGCG+GGG - chr3_3:53345134-53345153 Msa0458060:intron 30.0%
TTACATGTTGATCTTTGAGT+CGG - chr3_3:53345451-53345470 Msa0458060:five_prime_UTR 30.0%
AGTCGGTTAAATAAGATAAC+TGG - chr3_3:53345468-53345487 Msa0458060:five_prime_UTR 30.0%
!!! AAACGCAACGTTTTGGAAAA+GGG - chr3_3:53341261-53341280 Msa0458060:three_prime_UTR 35.0%
!! TCGCTTTTCATAAGCTATCT+TGG - chr3_3:53341922-53341941 Msa0458060:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr3_3:53342044-53342063 Msa0458060:intron 35.0%
TAATAAACTAAGGGCCTGTT+TGG + chr3_3:53342061-53342080 None:intergenic 35.0%
GTGTCTTGATTTCTCTATTC+AGG - chr3_3:53342205-53342224 Msa0458060:intron 35.0%
! GATGTGGAATTTTGGATGAA+AGG + chr3_3:53342309-53342328 None:intergenic 35.0%
! TTGTCGAAGATGTGGAATTT+TGG + chr3_3:53342317-53342336 None:intergenic 35.0%
CAATTGTGCAAACTTACATC+AGG + chr3_3:53342434-53342453 None:intergenic 35.0%
CAGTCACATGAAACATGTAT+AGG + chr3_3:53342484-53342503 None:intergenic 35.0%
CTATACATGTTTCATGTGAC+TGG - chr3_3:53342482-53342501 Msa0458060:intron 35.0%
TAACAAATCCAGGCATTAGA+AGG + chr3_3:53342646-53342665 None:intergenic 35.0%
TGATGATTCAGTAGACAAGT+TGG - chr3_3:53342735-53342754 Msa0458060:intron 35.0%
TGAGAAGACAGAAAATCTGT+CGG - chr3_3:53342759-53342778 Msa0458060:CDS 35.0%
!! CTTTTAACTGCAGTTTCTGA+GGG - chr3_3:53342900-53342919 Msa0458060:intron 35.0%
!! TTTTAACTGCAGTTTCTGAG+GGG - chr3_3:53342901-53342920 Msa0458060:intron 35.0%
TGATGCGAAAAATGACGATT+TGG - chr3_3:53343137-53343156 Msa0458060:intron 35.0%
ATCATGCTGAAGAGAATGAA+GGG - chr3_3:53343254-53343273 Msa0458060:intron 35.0%
TGATCGTGATTATCAATACG+AGG - chr3_3:53343318-53343337 Msa0458060:intron 35.0%
ACATTTATGGAACTAGGTGA+GGG + chr3_3:53343427-53343446 None:intergenic 35.0%
AACATTTATGGAACTAGGTG+AGG + chr3_3:53343428-53343447 None:intergenic 35.0%
! TATTTGGATAGTGGTTCTTG+TGG - chr3_3:53343482-53343501 Msa0458060:CDS 35.0%
TTATATGGATTCTGCTCTCA+AGG - chr3_3:53343632-53343651 Msa0458060:CDS 35.0%
TATATGGATTCTGCTCTCAA+GGG - chr3_3:53343633-53343652 Msa0458060:CDS 35.0%
TCGTTGTTGTATTATTGGTG+TGG - chr3_3:53343693-53343712 Msa0458060:intron 35.0%
CGTTGTTGTATTATTGGTGT+GGG - chr3_3:53343694-53343713 Msa0458060:intron 35.0%
!! TCTCTACTTTTGCTCTTTGT+TGG - chr3_3:53343762-53343781 Msa0458060:intron 35.0%
! ATGTTTTTCTGTGCAGCTTT+TGG - chr3_3:53343870-53343889 Msa0458060:intron 35.0%
! TGTTTTTCTGTGCAGCTTTT+GGG - chr3_3:53343871-53343890 Msa0458060:intron 35.0%
TCACCTAAGAAAATGCGTTT+AGG + chr3_3:53344111-53344130 None:intergenic 35.0%
! CGCATTTTCTTAGGTGATTT+TGG - chr3_3:53344114-53344133 Msa0458060:intron 35.0%
! AACAACATGAAAAGCACATC+AGG - chr3_3:53344221-53344240 Msa0458060:intron 35.0%
! GATGAATATGTCATTTGCCT+TGG - chr3_3:53344575-53344594 Msa0458060:intron 35.0%
! GAAATTTCACCTTTTCACAC+CGG + chr3_3:53344652-53344671 None:intergenic 35.0%
GATATACATAGAGAGGGAAT+AGG + chr3_3:53344681-53344700 None:intergenic 35.0%
TGCAGAGATATACATAGAGA+GGG + chr3_3:53344687-53344706 None:intergenic 35.0%
TTGCAGAGATATACATAGAG+AGG + chr3_3:53344688-53344707 None:intergenic 35.0%
ATGTATATCTCTGCAACCTA+CGG - chr3_3:53344692-53344711 Msa0458060:intron 35.0%
AATTTCAGGAACCAATTCAC+CGG + chr3_3:53344731-53344750 None:intergenic 35.0%
TCTCCAACTCATTAATCTCT+AGG - chr3_3:53344840-53344859 Msa0458060:intron 35.0%
TTCCTACAGGATATATGAGT+TGG + chr3_3:53344916-53344935 None:intergenic 35.0%
ATGTAGGTCAAGCAAAAGTT+GGG + chr3_3:53345374-53345393 None:intergenic 35.0%
AAGTACGGTATACAACATGT+AGG + chr3_3:53345390-53345409 None:intergenic 35.0%
CAATAAACTCAGCTGAAGTA+CGG + chr3_3:53345405-53345424 None:intergenic 35.0%
!!! GAAACGCAACGTTTTGGAAA+AGG - chr3_3:53341260-53341279 Msa0458060:three_prime_UTR 40.0%
! GTCTGATGATGCTATTGGAA+CGG + chr3_3:53341296-53341315 None:intergenic 40.0%
! ACTGTGTCTGATGATGCTAT+TGG + chr3_3:53341301-53341320 None:intergenic 40.0%
AAGCACTTGTCAGACTGTTT+AGG + chr3_3:53342012-53342031 None:intergenic 40.0%
TGCTTAGGTTTCAGTAACCA+TGG - chr3_3:53342373-53342392 Msa0458060:CDS 40.0%
TGAAGCACAGATTGATGTGA+AGG - chr3_3:53342400-53342419 Msa0458060:CDS 40.0%
ACAGATTGATGTGAAGGAAG+AGG - chr3_3:53342406-53342425 Msa0458060:CDS 40.0%
TTGTACTACCTTCTAATGCC+TGG - chr3_3:53342635-53342654 Msa0458060:intron 40.0%
ATCATCAAGATCTACCACTG+CGG + chr3_3:53342719-53342738 None:intergenic 40.0%
GAGAAGACAGAAAATCTGTC+GGG - chr3_3:53342760-53342779 Msa0458060:CDS 40.0%
CCTCAGAAACTGCAGTTAAA+AGG + chr3_3:53342902-53342921 None:intergenic 40.0%
!! CCTTTTAACTGCAGTTTCTG+AGG - chr3_3:53342899-53342918 Msa0458060:intron 40.0%
AAGAAGAAGAAGAAGCCTGT+AGG - chr3_3:53342951-53342970 Msa0458060:intron 40.0%
! GCGAAAAATGACGATTTGGA+TGG - chr3_3:53343141-53343160 Msa0458060:intron 40.0%
ATTCTCTTCAGCATGATCTG+AGG + chr3_3:53343251-53343270 None:intergenic 40.0%
GATCATGCTGAAGAGAATGA+AGG - chr3_3:53343253-53343272 Msa0458060:intron 40.0%
TCATGCTGAAGAGAATGAAG+GGG - chr3_3:53343255-53343274 Msa0458060:intron 40.0%
TCGTGATTATCAATACGAGG+AGG - chr3_3:53343321-53343340 Msa0458060:intron 40.0%
!! TTTATAGGCTGTGTTTTGGG+TGG - chr3_3:53343533-53343552 Msa0458060:intron 40.0%
!! TTATAGGCTGTGTTTTGGGT+GGG - chr3_3:53343534-53343553 Msa0458060:intron 40.0%
GAGAATAATCCAGAACTTGC+TGG - chr3_3:53343916-53343935 Msa0458060:intron 40.0%
! GTCTTGCTACCTTGTCTTTT+AGG - chr3_3:53344325-53344344 Msa0458060:intron 40.0%
!!! CCTTGTCTTTTAGGATGCAT+CGG - chr3_3:53344334-53344353 Msa0458060:intron 40.0%
AAGAAAGCCATGACATGATC+TGG + chr3_3:53344363-53344382 None:intergenic 40.0%
TTTGCACCAAAGAACTTCGA+AGG - chr3_3:53344447-53344466 Msa0458060:intron 40.0%
TCCTGACACAATACTGTCAA+AGG - chr3_3:53344607-53344626 Msa0458060:intron 40.0%
TCCTTTGACAGTATTGTGTC+AGG + chr3_3:53344611-53344630 None:intergenic 40.0%
AGAACCGTTTGTTCTTTCTC+CGG - chr3_3:53344630-53344649 Msa0458060:intron 40.0%
GGACCTAGAGATTAATGAGT+TGG + chr3_3:53344846-53344865 None:intergenic 40.0%
! TATATGAGTTGGAGACCTAG+AGG + chr3_3:53344905-53344924 None:intergenic 40.0%
CTCCAACTCATATATCCTGT+AGG - chr3_3:53344911-53344930 Msa0458060:intron 40.0%
AAGATCAGTTGCACCTATCA+AGG - chr3_3:53345237-53345256 Msa0458060:intron 40.0%
GTCAAGCAAAAGTTGGGAAA+TGG + chr3_3:53345368-53345387 None:intergenic 40.0%
CATGTAGGTCAAGCAAAAGT+TGG + chr3_3:53345375-53345394 None:intergenic 40.0%
! AGAAGCGAAACGCAACGTTT+TGG - chr3_3:53341254-53341273 Msa0458060:three_prime_UTR 45.0%
CATACGAGTTAACCGATCGA+AGG + chr3_3:53341370-53341389 None:intergenic 45.0%
AACTAAGGGCCTGTTTGGAT+TGG + chr3_3:53342056-53342075 None:intergenic 45.0%
AATCTGTGCTTCATCTGCCA+TGG + chr3_3:53342393-53342412 None:intergenic 45.0%
TCATCAAGATCTACCACTGC+GGG + chr3_3:53342718-53342737 None:intergenic 45.0%
GGGTTTGACAGTACTTTAGC+TGG - chr3_3:53342921-53342940 Msa0458060:intron 45.0%
TATGCCTCTCCCTTGAAATG+CGG - chr3_3:53343375-53343394 Msa0458060:intron 45.0%
!! TATAGGCTGTGTTTTGGGTG+GGG - chr3_3:53343535-53343554 Msa0458060:intron 45.0%
! GGTGGGGTCTTTGCATATTT+TGG - chr3_3:53343551-53343570 Msa0458060:intron 45.0%
CCGATGCATCCTAAAAGACA+AGG + chr3_3:53344337-53344356 None:intergenic 45.0%
TGTCATGGCTTTCTTGCTTG+CGG - chr3_3:53344368-53344387 Msa0458060:CDS 45.0%
GGTACAAGTGGTTCTCTAGA+TGG - chr3_3:53344396-53344415 Msa0458060:intron 45.0%
TCTAGATGGACAGCAGAGAT+TGG - chr3_3:53344410-53344429 Msa0458060:intron 45.0%
! ACAGCAGAGATTGGTTGTGA+AGG - chr3_3:53344419-53344438 Msa0458060:intron 45.0%
! CAGCAGAGATTGGTTGTGAA+GGG - chr3_3:53344420-53344439 Msa0458060:intron 45.0%
! AGAGATTGGTTGTGAAGGGA+AGG - chr3_3:53344424-53344443 Msa0458060:intron 45.0%
! TGTCAGGACTTTTGCATCCA+AGG + chr3_3:53344595-53344614 None:intergenic 45.0%
CACACCGGAGAAAGAACAAA+CGG + chr3_3:53344637-53344656 None:intergenic 45.0%
GTTCTTTCTCCGGTGTGAAA+AGG - chr3_3:53344640-53344659 Msa0458060:intron 45.0%
! CAAGCCTTATCCCATTGAGT+GGG - chr3_3:53344765-53344784 Msa0458060:intron 45.0%
! AAGCCTTATCCCATTGAGTG+GGG - chr3_3:53344766-53344785 Msa0458060:intron 45.0%
GTCTTTCTAGGTCTTCCTCT+AGG - chr3_3:53344887-53344906 Msa0458060:intron 45.0%
GTAGTGTATTGCTTGCAGTG+TGG - chr3_3:53345208-53345227 Msa0458060:intron 45.0%
TATTGCTTGCAGTGTGGATC+AGG - chr3_3:53345214-53345233 Msa0458060:intron 45.0%
GCAACAAAACCAGCCTTGAT+AGG + chr3_3:53345253-53345272 None:intergenic 45.0%
TAACCGATCGAAGGAGAGAG+CGG + chr3_3:53341361-53341380 None:intergenic 50.0%
GAAGAAAAAGAAGCCCGCAG+TGG - chr3_3:53342702-53342721 Msa0458060:intron 50.0%
CTTGCAACCTCGTTACCCTT+GGG - chr3_3:53343288-53343307 Msa0458060:intron 50.0%
CACGATCACTTCCTTCCCAA+GGG + chr3_3:53343306-53343325 None:intergenic 50.0%
TCACGATCACTTCCTTCCCA+AGG + chr3_3:53343307-53343326 None:intergenic 50.0%
TACACCGCATTTCAAGGGAG+AGG + chr3_3:53343382-53343401 None:intergenic 50.0%
! TTTCTGTGCAGCTTTTGGGC+AGG - chr3_3:53343875-53343894 Msa0458060:intron 50.0%
! TTCTGTGCAGCTTTTGGGCA+GGG - chr3_3:53343876-53343895 Msa0458060:intron 50.0%
ACCGACGGAGAACTGTTATG+AGG - chr3_3:53343941-53343960 Msa0458060:intron 50.0%
GCCTCATAACAGTTCTCCGT+CGG + chr3_3:53343945-53343964 None:intergenic 50.0%
GCTTTCTTGCTTGCGGAACT+GGG - chr3_3:53344375-53344394 Msa0458060:CDS 50.0%
CTACGGAAATTGTAGAGCGC+CGG - chr3_3:53344709-53344728 Msa0458060:intron 50.0%
!! ATTGTAGAGCGCCGGTGAAT+TGG - chr3_3:53344717-53344736 Msa0458060:intron 50.0%
CCACTCAATGGGATAAGGCT+TGG + chr3_3:53344767-53344786 None:intergenic 50.0%
! CCAAGCCTTATCCCATTGAG+TGG - chr3_3:53344764-53344783 Msa0458060:intron 50.0%
CAACCCCACTCAATGGGATA+AGG + chr3_3:53344772-53344791 None:intergenic 50.0%
CTTATCCCATTGAGTGGGGT+TGG - chr3_3:53344770-53344789 Msa0458060:intron 50.0%
TGTAGCCAACCCCACTCAAT+GGG + chr3_3:53344778-53344797 None:intergenic 50.0%
ATGTAGCCAACCCCACTCAA+TGG + chr3_3:53344779-53344798 None:intergenic 50.0%
TCAGTTGCACCTATCAAGGC+TGG - chr3_3:53345241-53345260 Msa0458060:intron 50.0%
!!! GCTGGTTTTGTTGCTCGTGT+TGG - chr3_3:53345259-53345278 Msa0458060:intron 50.0%
AGAGCGGAGCGAGAGAAATC+TGG + chr3_3:53341345-53341364 None:intergenic 55.0%
CCAAGGGTAACGAGGTTGCA+AGG + chr3_3:53343290-53343309 None:intergenic 55.0%
CCTTGCAACCTCGTTACCCT+TGG - chr3_3:53343287-53343306 Msa0458060:intron 55.0%
CAACCTCGTTACCCTTGGGA+AGG - chr3_3:53343292-53343311 Msa0458060:intron 55.0%
CTTCCTTCCCAAGGGTAACG+AGG + chr3_3:53343298-53343317 None:intergenic 55.0%
!! CAGAACTTGCTGGAGACCGA+CGG - chr3_3:53343926-53343945 Msa0458060:intron 55.0%
CCTCCACAAGTGCTTCGTGA+GGG - chr3_3:53343964-53343983 Msa0458060:intron 55.0%
TCGGCAGCCAGATCATGTCA+TGG - chr3_3:53344353-53344372 Msa0458060:CDS 55.0%
GGCTTTCTTGCTTGCGGAAC+TGG - chr3_3:53344374-53344393 Msa0458060:CDS 55.0%
CTTGCGGAACTGGGTACAAG+TGG - chr3_3:53344384-53344403 Msa0458060:exon 55.0%
CGGCGCTCTACAATTTCCGT+AGG + chr3_3:53344711-53344730 None:intergenic 55.0%
! TTGTTGCTCGTGTTGGCCGT+AGG - chr3_3:53345266-53345285 Msa0458060:intron 55.0%
GCTCCGCTCTCTCCTTCGAT+CGG - chr3_3:53341355-53341374 Msa0458060:three_prime_UTR 60.0%
CGTCGGTCTCCAGCAAGTTC+TGG + chr3_3:53343928-53343947 None:intergenic 60.0%
GCCTCCACAAGTGCTTCGTG+AGG - chr3_3:53343963-53343982 Msa0458060:intron 60.0%
! CCCTCACGAAGCACTTGTGG+AGG + chr3_3:53343967-53343986 None:intergenic 60.0%
! GTGCCCTCACGAAGCACTTG+TGG + chr3_3:53343970-53343989 None:intergenic 60.0%
! TCGTGTTGGCCGTAGGACTG+CGG - chr3_3:53345273-53345292 Msa0458060:intron 60.0%
ATGTCCCTCCCGCAGTCCTA+CGG + chr3_3:53345285-53345304 None:intergenic 60.0%
! CGTGTTGGCCGTAGGACTGC+GGG - chr3_3:53345274-53345293 Msa0458060:intron 65.0%
TTGGCCGTAGGACTGCGGGA+GGG - chr3_3:53345278-53345297 Msa0458060:intron 65.0%
GTTGGCCGTAGGACTGCGGG+AGG - chr3_3:53345277-53345296 Msa0458060:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 53341254 53345535 53341254 ID=Msa0458060;Name=Msa0458060
chr3_3 mRNA 53341254 53345535 53341254 ID=Msa0458060-mRNA-1;Parent=Msa0458060;Name=Msa0458060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=143|1|1|1|0.88|0.8|10|229|270
chr3_3 exon 53341254 53341563 53341254 ID=Msa0458060-mRNA-1:exon:10384;Parent=Msa0458060-mRNA-1
chr3_3 exon 53342128 53342213 53342128 ID=Msa0458060-mRNA-1:exon:10383;Parent=Msa0458060-mRNA-1
chr3_3 exon 53342300 53342442 53342300 ID=Msa0458060-mRNA-1:exon:10382;Parent=Msa0458060-mRNA-1
chr3_3 exon 53342758 53342903 53342758 ID=Msa0458060-mRNA-1:exon:10381;Parent=Msa0458060-mRNA-1
chr3_3 exon 53343447 53343535 53343447 ID=Msa0458060-mRNA-1:exon:10380;Parent=Msa0458060-mRNA-1
chr3_3 exon 53343627 53343684 53343627 ID=Msa0458060-mRNA-1:exon:10379;Parent=Msa0458060-mRNA-1
chr3_3 exon 53343821 53343876 53343821 ID=Msa0458060-mRNA-1:exon:10378;Parent=Msa0458060-mRNA-1
chr3_3 exon 53344008 53344116 53344008 ID=Msa0458060-mRNA-1:exon:10377;Parent=Msa0458060-mRNA-1
chr3_3 exon 53344353 53344409 53344353 ID=Msa0458060-mRNA-1:exon:10376;Parent=Msa0458060-mRNA-1
chr3_3 exon 53345405 53345535 53345405 ID=Msa0458060-mRNA-1:exon:10375;Parent=Msa0458060-mRNA-1
chr3_3 five_prime_UTR 53345405 53345535 53345405 ID=Msa0458060-mRNA-1:five_prime_utr;Parent=Msa0458060-mRNA-1
chr3_3 five_prime_UTR 53344398 53344409 53344398 ID=Msa0458060-mRNA-1:five_prime_utr;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53344353 53344397 53344353 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53344008 53344116 53344008 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53343821 53343876 53343821 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53343627 53343684 53343627 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53343447 53343535 53343447 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53342758 53342903 53342758 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53342300 53342442 53342300 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53342128 53342213 53342128 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 CDS 53341483 53341563 53341483 ID=Msa0458060-mRNA-1:cds;Parent=Msa0458060-mRNA-1
chr3_3 three_prime_UTR 53341254 53341482 53341254 ID=Msa0458060-mRNA-1:three_prime_utr;Parent=Msa0458060-mRNA-1
Gene Sequence

>Msa0458060

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCGGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>Msa0458060

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT*