AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077150 MtrunA17_Chr7g0261381 98.131 214 3 1 1 213 1 214 1.88e-157 434
Msa1077150 MtrunA17_Chr1g0167411 75.132 189 46 1 1 188 1 189 2.74e-94 274
Msa1077150 MtrunA17_Chr1g0183761 100.000 131 0 0 64 194 45 175 2.82e-87 256
Msa1077150 MtrunA17_Chr4g0051251 82.609 138 24 0 63 200 45 182 1.25e-85 253
Msa1077150 MtrunA17_Chr1g0187671 93.333 135 9 0 60 194 49 183 4.76e-85 250
Msa1077150 MtrunA17_Chr5g0431211 80.451 133 26 0 63 195 36 168 8.40e-83 245
Msa1077150 MtrunA17_Chr3g0105921 81.818 132 24 0 64 195 42 173 1.11e-73 222
Msa1077150 MtrunA17_Chr2g0325831 71.724 145 34 1 43 187 9 146 2.88e-73 219
Msa1077150 MtrunA17_Chr7g0274631 64.024 164 49 3 33 195 4 158 3.68e-72 216
Msa1077150 MtrunA17_Chr4g0041141 64.474 152 54 0 36 187 1 152 1.10e-71 215
Msa1077150 MtrunA17_Chr2g0283861 75.758 132 32 0 63 194 34 165 6.44e-71 214
Msa1077150 MtrunA17_Chr2g0315791 75.000 132 33 0 63 194 32 163 4.46e-70 211
Msa1077150 MtrunA17_Chr1g0190231 83.200 125 21 0 64 188 40 164 2.15e-69 210
Msa1077150 MtrunA17_Chr8g0379061 72.800 125 34 0 63 187 84 208 2.98e-55 176
Msa1077150 MtrunA17_Chr1g0211641 86.667 45 6 0 58 102 65 109 3.10e-23 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077150 AT2G31160.1 80.702 171 29 1 25 195 19 185 1.51e-87 258
Msa1077150 AT1G07090.1 75.862 145 35 0 53 197 20 164 1.12e-84 249
Msa1077150 AT3G23290.2 71.809 188 37 2 1 188 1 172 7.66e-80 237
Msa1077150 AT5G58500.1 79.104 134 27 1 63 195 18 151 5.45e-79 234
Msa1077150 AT2G42610.1 76.642 137 32 0 59 195 20 156 2.02e-73 220
Msa1077150 AT2G42610.2 76.642 137 32 0 59 195 20 156 2.02e-73 220
Msa1077150 AT5G28490.1 83.088 136 23 0 58 193 19 154 1.25e-72 219
Msa1077150 AT3G04510.1 79.412 136 27 1 64 199 33 167 1.37e-69 211
Msa1077150 AT1G78815.1 67.200 125 41 0 63 187 39 163 8.96e-63 194
Msa1077150 AT4G18610.1 69.048 126 38 1 63 187 36 161 3.59e-62 192
Msa1077150 AT1G16910.1 61.194 134 52 0 59 192 18 151 2.75e-58 181

Find 85 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCATGGTGTTTAGGTATT+TGG 0.100645 7_2:+75706065 Msa1077150:intron
TTTAGGTATTTGGATCAATT+TGG 0.178063 7_2:+75706075 Msa1077150:intron
GCACCAAAAGGATTTGTTTC+TGG 0.187984 7_2:-75706246 None:intergenic
AATTGATAGCTTGTTCTTCT+AGG 0.228267 7_2:-75705296 None:intergenic
CATATAGAGTGCTTTGTCTT+TGG 0.231876 7_2:+75706504 Msa1077150:three_prime_UTR
CACATGTTCTTGAATTTCTA+AGG 0.231888 7_2:+75705710 Msa1077150:CDS
TTTGATTTGCCACAAATATA+TGG 0.239297 7_2:+75706911 Msa1077150:three_prime_UTR
CTTCCCCATGCTTGCCTTAG+AGG 0.241570 7_2:-75706168 None:intergenic
AAGAACAAGCTATCAATTCT+TGG 0.246890 7_2:+75705301 Msa1077150:five_prime_UTR
TCGATGTGGATAACATTATT+TGG 0.250214 7_2:+75706994 Msa1077150:three_prime_UTR
GATTCAATTCAAGAATTTAT+AGG 0.256232 7_2:+75705430 Msa1077150:CDS
ATTCAATTCAAGAATTTATA+GGG 0.271654 7_2:+75705431 Msa1077150:CDS
AAAATCCACAGCTATAGTTT+TGG 0.278394 7_2:+75705082 Msa1077150:five_prime_UTR
CTATTAATATTCTTCATTCA+TGG 0.289901 7_2:-75704962 None:intergenic
CTAAAATCTAGTATGATTAA+AGG 0.293625 7_2:-75706823 None:intergenic
GGACATGGTGCTGGTGGATT+TGG 0.312240 7_2:-75706141 None:intergenic
GAGAGAGAAGTGTTAGGCTT+TGG 0.337929 7_2:-75704927 None:intergenic
CATGAATGAAGAATATTAAT+AGG 0.338528 7_2:+75704963 Msa1077150:five_prime_UTR
TGTTAGGCTTTGGAGGAAAT+AGG 0.341015 7_2:-75704917 None:intergenic
GGATTTGGATGCCCATAAAA+TGG 0.348197 7_2:-75706126 None:intergenic
TTAGGTATTTGGATCAATTT+GGG 0.353257 7_2:+75706076 Msa1077150:intron
CACCATGTCCATGTCCTCTA+AGG 0.357440 7_2:+75706154 Msa1077150:CDS
GTGCACCGCTGCACCTAGAT+AGG 0.377390 7_2:-75705690 None:intergenic
AGAGAAGTGTTAGGCTTTGG+AGG 0.380585 7_2:-75704924 None:intergenic
CGCCGTGACTGGAACACCTT+TGG 0.383976 7_2:+75705634 Msa1077150:CDS
TGCCCATAAAATGGACAAAT+TGG 0.388714 7_2:-75706117 None:intergenic
ATTTAAATTCCATATATTTG+TGG 0.392695 7_2:-75706920 None:intergenic
GGAACTTGCTGTTGCTGTGA+TGG 0.403302 7_2:-75706360 None:intergenic
GAAAAGTTGGACAGTAGGTT+TGG 0.403335 7_2:-75704891 None:intergenic
CTCATAGCGGCTGCTACTGT+TGG 0.404554 7_2:-75705602 None:intergenic
AGGAAATAGGAAAGAAAAGT+TGG 0.404681 7_2:-75704904 None:intergenic
GTTGTTATTCATGAAGTTGC+AGG 0.404729 7_2:-75705476 None:intergenic
TTCTGTCACAGCAAGTAAAC+AGG 0.405995 7_2:-75706529 None:intergenic
AAACCAGAAACAAATCCTTT+TGG 0.416713 7_2:+75706243 Msa1077150:CDS
GAACTTTGAAGCTACATTTG+TGG 0.427671 7_2:+75706945 Msa1077150:three_prime_UTR
TCCACATCGATCACTATGTA+TGG 0.449619 7_2:-75706981 None:intergenic
AGAATCAGAAACGCCGTGAC+TGG 0.455928 7_2:+75705623 Msa1077150:CDS
ATTGATAGCTTGTTCTTCTA+GGG 0.463832 7_2:-75705295 None:intergenic
GTTGCACTTGCACCTTGTGC+TGG 0.465381 7_2:-75706387 None:intergenic
ACTGTTGGGACTGTTGATGA+TGG 0.472335 7_2:-75705587 None:intergenic
CTTGCACCTTGTGCTGGTGG+TGG 0.478161 7_2:-75706381 None:intergenic
GGAAAGAAAAGTTGGACAGT+AGG 0.482092 7_2:-75704896 None:intergenic
GTCCACCTCTTTCCCTATCT+AGG 0.482546 7_2:+75705677 Msa1077150:CDS
AGTTGGACAGTAGGTTTGGA+TGG 0.483212 7_2:-75704887 None:intergenic
TCATAGCGGCTGCTACTGTT+GGG 0.492824 7_2:-75705601 None:intergenic
TCATCACTTGTTAGTGCTAG+TGG 0.505405 7_2:-75705000 None:intergenic
CTCACAGCTCGAGCACCAAA+AGG 0.515193 7_2:-75706258 None:intergenic
GGAAGCCTTGATGCACTCAT+AGG 0.523874 7_2:+75706186 Msa1077150:CDS
CATGTCCTCTAAGGCAAGCA+TGG 0.527761 7_2:+75706163 Msa1077150:CDS
CAGTAGGTTTGGATGGAGAC+AGG 0.529323 7_2:-75704880 None:intergenic
CATGCTTGCCTTAGAGGACA+TGG 0.533497 7_2:-75706162 None:intergenic
ACAACAACTACTACAGCAAG+TGG 0.533770 7_2:+75705538 Msa1077150:CDS
GCACTTGCACCTTGTGCTGG+TGG 0.535986 7_2:-75706384 None:intergenic
AGAGAATGTGATGAGATTGA+TGG 0.544970 7_2:-75705143 None:intergenic
AGAGGACATGGACATGGTGC+TGG 0.548410 7_2:-75706150 None:intergenic
TGTTGTTGTTAAGCTTGTTG+TGG 0.548599 7_2:-75705521 None:intergenic
ATGTCCTCTAAGGCAAGCAT+GGG 0.548889 7_2:+75706164 Msa1077150:CDS
TTGAAGCTTGTGAATATACA+TGG 0.551801 7_2:+75706654 Msa1077150:three_prime_UTR
CTTTGCGCTTTGCAGATCCA+AGG 0.557748 7_2:-75705366 None:intergenic
TTCAATTCAAGAATTTATAG+GGG 0.568491 7_2:+75705432 Msa1077150:CDS
GACCAAAGGTGTTCCAGTCA+CGG 0.570044 7_2:-75705636 None:intergenic
TACTGGTAGTAGACTCATAG+TGG 0.572208 7_2:+75706622 Msa1077150:three_prime_UTR
AGACAGTGCTGTGTTTGTAC+TGG 0.573730 7_2:+75706605 Msa1077150:three_prime_UTR
TGCACCGCTGCACCTAGATA+GGG 0.577239 7_2:-75705689 None:intergenic
ACTTGCTGTTGCTGTGATGG+TGG 0.580007 7_2:-75706357 None:intergenic
GCTTCCCAAAACTATAGCTG+TGG 0.585676 7_2:-75705087 None:intergenic
CTGCACCTAGATAGGGAAAG+AGG 0.589406 7_2:-75705682 None:intergenic
GATCTTCAATCAAAAGCAAG+AGG 0.593770 7_2:+75706303 Msa1077150:CDS
CTTGGATCTGCAAAGCGCAA+AGG 0.600861 7_2:+75705367 Msa1077150:five_prime_UTR
TCATAGCTGTTATTGTTGAG+TGG 0.610117 7_2:-75706713 None:intergenic
GAGAATGTGATGAGATTGAT+GGG 0.614654 7_2:-75705142 None:intergenic
ATTCTTGAGGTACTGACCAA+AGG 0.618944 7_2:-75705650 None:intergenic
GACGACCTATGAGTGCATCA+AGG 0.630031 7_2:-75706191 None:intergenic
CAAGTTCCACCACCAGCACA+AGG 0.630971 7_2:+75706375 Msa1077150:CDS
GATGGTTGAAGCTGCAGATG+AGG 0.631628 7_2:-75705569 None:intergenic
TGCCTTAGAGGACATGGACA+TGG 0.634202 7_2:-75706156 None:intergenic
GGACATGGACATGGTGCTGG+TGG 0.656231 7_2:-75706147 None:intergenic
CTTTCCCTATCTAGGTGCAG+CGG 0.657727 7_2:+75705685 Msa1077150:CDS
CACCTAGATAGGGAAAGAGG+TGG 0.660487 7_2:-75705679 None:intergenic
GAAGATCACGAACTTCGCGA+AGG 0.664694 7_2:-75706287 None:intergenic
GGCGTTTCTGATTCTCATAG+CGG 0.670856 7_2:-75705615 None:intergenic
TCCATACATAGTGATCGATG+TGG 0.693643 7_2:+75706980 Msa1077150:three_prime_UTR
TGTCCTCTAAGGCAAGCATG+GGG 0.718093 7_2:+75706165 Msa1077150:CDS
GCTGAGAAATGAGAATCACA+CGG 0.732864 7_2:-75706687 None:intergenic
GAGGTGGACGATGATTCTTG+AGG 0.772685 7_2:-75705663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTTTATGTTTATTTT+AGG - chr7_2:75705230-75705249 None:intergenic 10.0%
!!! ACTTTTTTTTAATCATATTT+AGG + chr7_2:75706447-75706466 Msa1077150:three_prime_UTR 10.0%
!!! CTTTTTTTTAATCATATTTA+GGG + chr7_2:75706448-75706467 Msa1077150:three_prime_UTR 10.0%
!!! ACTATTTTTATGTTTATTTT+AGG - chr7_2:75705230-75705249 None:intergenic 10.0%
!!! ACTTTTTTTTAATCATATTT+AGG + chr7_2:75706447-75706466 Msa1077150:three_prime_UTR 10.0%
!!! CTTTTTTTTAATCATATTTA+GGG + chr7_2:75706448-75706467 Msa1077150:three_prime_UTR 10.0%
!!! TAGTTTTTATTTCCTTAAAA+GGG - chr7_2:75705057-75705076 None:intergenic 15.0%
!!! TTTATGTTTATTTTAGGAAT+AGG - chr7_2:75705224-75705243 None:intergenic 15.0%
!! ATTCAATTCAAGAATTTATA+GGG + chr7_2:75705431-75705450 Msa1077150:CDS 15.0%
!!! TACATCACAATTTTTTATAT+TGG + chr7_2:75705852-75705871 Msa1077150:intron 15.0%
!!! TTATTTTGGTTAATTTATCA+TGG + chr7_2:75706050-75706069 Msa1077150:intron 15.0%
!! ATTTAAATTCCATATATTTG+TGG - chr7_2:75706923-75706942 None:intergenic 15.0%
!!! TAGTTTTTATTTCCTTAAAA+GGG - chr7_2:75705057-75705076 None:intergenic 15.0%
!!! TTTATGTTTATTTTAGGAAT+AGG - chr7_2:75705224-75705243 None:intergenic 15.0%
!! ATTCAATTCAAGAATTTATA+GGG + chr7_2:75705431-75705450 Msa1077150:CDS 15.0%
!!! TACATCACAATTTTTTATAT+TGG + chr7_2:75705852-75705871 Msa1077150:intron 15.0%
!!! TTATTTTGGTTAATTTATCA+TGG + chr7_2:75706050-75706069 Msa1077150:intron 15.0%
!! ATTTAAATTCCATATATTTG+TGG - chr7_2:75706923-75706942 None:intergenic 15.0%
!! CTATTAATATTCTTCATTCA+TGG - chr7_2:75704965-75704984 None:intergenic 20.0%
!! CATGAATGAAGAATATTAAT+AGG + chr7_2:75704963-75704982 Msa1077150:five_prime_UTR 20.0%
!!! GTAGTTTTTATTTCCTTAAA+AGG - chr7_2:75705058-75705077 None:intergenic 20.0%
!!! TTTATTTTAGGAATAGGATA+GGG - chr7_2:75705218-75705237 None:intergenic 20.0%
!! AAGTGAAAGAGTTAATTAAT+TGG - chr7_2:75705263-75705282 None:intergenic 20.0%
!! GATTCAATTCAAGAATTTAT+AGG + chr7_2:75705430-75705449 Msa1077150:CDS 20.0%
!! TTCAATTCAAGAATTTATAG+GGG + chr7_2:75705432-75705451 Msa1077150:CDS 20.0%
!! CTAAAATCTAGTATGATTAA+AGG - chr7_2:75706826-75706845 None:intergenic 20.0%
!!! CTTTAATCATACTAGATTTT+AGG + chr7_2:75706824-75706843 Msa1077150:three_prime_UTR 20.0%
!! CTATTAATATTCTTCATTCA+TGG - chr7_2:75704965-75704984 None:intergenic 20.0%
!! CATGAATGAAGAATATTAAT+AGG + chr7_2:75704963-75704982 Msa1077150:five_prime_UTR 20.0%
!!! GTAGTTTTTATTTCCTTAAA+AGG - chr7_2:75705058-75705077 None:intergenic 20.0%
!!! TTTATTTTAGGAATAGGATA+GGG - chr7_2:75705218-75705237 None:intergenic 20.0%
!! AAGTGAAAGAGTTAATTAAT+TGG - chr7_2:75705263-75705282 None:intergenic 20.0%
!! GATTCAATTCAAGAATTTAT+AGG + chr7_2:75705430-75705449 Msa1077150:CDS 20.0%
!! TTCAATTCAAGAATTTATAG+GGG + chr7_2:75705432-75705451 Msa1077150:CDS 20.0%
!! CTAAAATCTAGTATGATTAA+AGG - chr7_2:75706826-75706845 None:intergenic 20.0%
!!! CTTTAATCATACTAGATTTT+AGG + chr7_2:75706824-75706843 Msa1077150:three_prime_UTR 20.0%
!!! GTTTATTTTAGGAATAGGAT+AGG - chr7_2:75705219-75705238 None:intergenic 25.0%
! ACAAAATTCAAAAACAACCT+TGG + chr7_2:75705349-75705368 Msa1077150:five_prime_UTR 25.0%
!! AACGTTAAGCTATATTTTCA+TGG + chr7_2:75705408-75705427 Msa1077150:exon 25.0%
! CATTGTATAACTCAAAATTG+CGG + chr7_2:75705987-75706006 Msa1077150:intron 25.0%
! GTTAATTTATCATGGTGTTT+AGG + chr7_2:75706058-75706077 Msa1077150:intron 25.0%
! TTTAGGTATTTGGATCAATT+TGG + chr7_2:75706075-75706094 Msa1077150:intron 25.0%
! TTAGGTATTTGGATCAATTT+GGG + chr7_2:75706076-75706095 Msa1077150:intron 25.0%
!!! TTTGATTTGCCACAAATATA+TGG + chr7_2:75706911-75706930 Msa1077150:three_prime_UTR 25.0%
!!! GTTTATTTTAGGAATAGGAT+AGG - chr7_2:75705219-75705238 None:intergenic 25.0%
! ACAAAATTCAAAAACAACCT+TGG + chr7_2:75705349-75705368 Msa1077150:five_prime_UTR 25.0%
!! AACGTTAAGCTATATTTTCA+TGG + chr7_2:75705408-75705427 Msa1077150:exon 25.0%
! CATTGTATAACTCAAAATTG+CGG + chr7_2:75705987-75706006 Msa1077150:intron 25.0%
! GTTAATTTATCATGGTGTTT+AGG + chr7_2:75706058-75706077 Msa1077150:intron 25.0%
! TTTAGGTATTTGGATCAATT+TGG + chr7_2:75706075-75706094 Msa1077150:intron 25.0%
! TTAGGTATTTGGATCAATTT+GGG + chr7_2:75706076-75706095 Msa1077150:intron 25.0%
!!! TTTGATTTGCCACAAATATA+TGG + chr7_2:75706911-75706930 Msa1077150:three_prime_UTR 25.0%
AGGAAATAGGAAAGAAAAGT+TGG - chr7_2:75704907-75704926 None:intergenic 30.0%
!!! ACTATAGCTGTGGATTTTTT+AGG - chr7_2:75705080-75705099 None:intergenic 30.0%
! AAAATCCACAGCTATAGTTT+TGG + chr7_2:75705082-75705101 Msa1077150:five_prime_UTR 30.0%
! AAATCCACAGCTATAGTTTT+GGG + chr7_2:75705083-75705102 Msa1077150:five_prime_UTR 30.0%
!!! AACTCTTTCACTTTTTTCCA+AGG + chr7_2:75705270-75705289 Msa1077150:intron 30.0%
!! ATTGATAGCTTGTTCTTCTA+GGG - chr7_2:75705298-75705317 None:intergenic 30.0%
!! AATTGATAGCTTGTTCTTCT+AGG - chr7_2:75705299-75705318 None:intergenic 30.0%
AAGAACAAGCTATCAATTCT+TGG + chr7_2:75705301-75705320 Msa1077150:five_prime_UTR 30.0%
CACATGTTCTTGAATTTCTA+AGG + chr7_2:75705710-75705729 Msa1077150:CDS 30.0%
TATCATGGTGTTTAGGTATT+TGG + chr7_2:75706065-75706084 Msa1077150:intron 30.0%
! ACACCAATTTGTCCATTTTA+TGG + chr7_2:75706114-75706133 Msa1077150:CDS 30.0%
! CACCAATTTGTCCATTTTAT+GGG + chr7_2:75706115-75706134 Msa1077150:CDS 30.0%
! AAACCAGAAACAAATCCTTT+TGG + chr7_2:75706243-75706262 Msa1077150:CDS 30.0%
TTGAAGCTTGTGAATATACA+TGG + chr7_2:75706654-75706673 Msa1077150:three_prime_UTR 30.0%
TCGATGTGGATAACATTATT+TGG + chr7_2:75706994-75707013 Msa1077150:three_prime_UTR 30.0%
AGGAAATAGGAAAGAAAAGT+TGG - chr7_2:75704907-75704926 None:intergenic 30.0%
!!! ACTATAGCTGTGGATTTTTT+AGG - chr7_2:75705080-75705099 None:intergenic 30.0%
! AAAATCCACAGCTATAGTTT+TGG + chr7_2:75705082-75705101 Msa1077150:five_prime_UTR 30.0%
! AAATCCACAGCTATAGTTTT+GGG + chr7_2:75705083-75705102 Msa1077150:five_prime_UTR 30.0%
!!! AACTCTTTCACTTTTTTCCA+AGG + chr7_2:75705270-75705289 Msa1077150:intron 30.0%
!! ATTGATAGCTTGTTCTTCTA+GGG - chr7_2:75705298-75705317 None:intergenic 30.0%
!! AATTGATAGCTTGTTCTTCT+AGG - chr7_2:75705299-75705318 None:intergenic 30.0%
AAGAACAAGCTATCAATTCT+TGG + chr7_2:75705301-75705320 Msa1077150:five_prime_UTR 30.0%
CACATGTTCTTGAATTTCTA+AGG + chr7_2:75705710-75705729 Msa1077150:CDS 30.0%
TATCATGGTGTTTAGGTATT+TGG + chr7_2:75706065-75706084 Msa1077150:intron 30.0%
! ACACCAATTTGTCCATTTTA+TGG + chr7_2:75706114-75706133 Msa1077150:CDS 30.0%
! CACCAATTTGTCCATTTTAT+GGG + chr7_2:75706115-75706134 Msa1077150:CDS 30.0%
! AAACCAGAAACAAATCCTTT+TGG + chr7_2:75706243-75706262 Msa1077150:CDS 30.0%
TTGAAGCTTGTGAATATACA+TGG + chr7_2:75706654-75706673 Msa1077150:three_prime_UTR 30.0%
TCGATGTGGATAACATTATT+TGG + chr7_2:75706994-75707013 Msa1077150:three_prime_UTR 30.0%
GAGAATGTGATGAGATTGAT+GGG - chr7_2:75705145-75705164 None:intergenic 35.0%
AGAGAATGTGATGAGATTGA+TGG - chr7_2:75705146-75705165 None:intergenic 35.0%
! CTTTCTGCTTCATCATTTTC+AGG + chr7_2:75705183-75705202 Msa1077150:five_prime_UTR 35.0%
! GTTGTTATTCATGAAGTTGC+AGG - chr7_2:75705479-75705498 None:intergenic 35.0%
!! TGTTGTTGTTAAGCTTGTTG+TGG - chr7_2:75705524-75705543 None:intergenic 35.0%
ATGCAGTTGAAAAGAAAGAG+AGG - chr7_2:75705792-75705811 None:intergenic 35.0%
!! ATTTGACTTGTTAACCGACA+TGG + chr7_2:75705912-75705931 Msa1077150:intron 35.0%
GAACGAGATTTAAACCATGT+CGG - chr7_2:75705929-75705948 None:intergenic 35.0%
TGCCCATAAAATGGACAAAT+TGG - chr7_2:75706120-75706139 None:intergenic 35.0%
GATCTTCAATCAAAAGCAAG+AGG + chr7_2:75706303-75706322 Msa1077150:CDS 35.0%
! CATATAGAGTGCTTTGTCTT+TGG + chr7_2:75706504-75706523 Msa1077150:three_prime_UTR 35.0%
! TTCACAAGCTTCAACTTTTC+AGG - chr7_2:75706648-75706667 None:intergenic 35.0%
TCATAGCTGTTATTGTTGAG+TGG - chr7_2:75706716-75706735 None:intergenic 35.0%
!! GAACTTTGAAGCTACATTTG+TGG + chr7_2:75706945-75706964 Msa1077150:three_prime_UTR 35.0%
GAGAATGTGATGAGATTGAT+GGG - chr7_2:75705145-75705164 None:intergenic 35.0%
AGAGAATGTGATGAGATTGA+TGG - chr7_2:75705146-75705165 None:intergenic 35.0%
! CTTTCTGCTTCATCATTTTC+AGG + chr7_2:75705183-75705202 Msa1077150:five_prime_UTR 35.0%
! GTTGTTATTCATGAAGTTGC+AGG - chr7_2:75705479-75705498 None:intergenic 35.0%
!! TGTTGTTGTTAAGCTTGTTG+TGG - chr7_2:75705524-75705543 None:intergenic 35.0%
ATGCAGTTGAAAAGAAAGAG+AGG - chr7_2:75705792-75705811 None:intergenic 35.0%
!! ATTTGACTTGTTAACCGACA+TGG + chr7_2:75705912-75705931 Msa1077150:intron 35.0%
GAACGAGATTTAAACCATGT+CGG - chr7_2:75705929-75705948 None:intergenic 35.0%
TGCCCATAAAATGGACAAAT+TGG - chr7_2:75706120-75706139 None:intergenic 35.0%
GATCTTCAATCAAAAGCAAG+AGG + chr7_2:75706303-75706322 Msa1077150:CDS 35.0%
! CATATAGAGTGCTTTGTCTT+TGG + chr7_2:75706504-75706523 Msa1077150:three_prime_UTR 35.0%
! TTCACAAGCTTCAACTTTTC+AGG - chr7_2:75706648-75706667 None:intergenic 35.0%
TCATAGCTGTTATTGTTGAG+TGG - chr7_2:75706716-75706735 None:intergenic 35.0%
!! GAACTTTGAAGCTACATTTG+TGG + chr7_2:75706945-75706964 Msa1077150:three_prime_UTR 35.0%
GAAAAGTTGGACAGTAGGTT+TGG - chr7_2:75704894-75704913 None:intergenic 40.0%
GGAAAGAAAAGTTGGACAGT+AGG - chr7_2:75704899-75704918 None:intergenic 40.0%
!! TGTTAGGCTTTGGAGGAAAT+AGG - chr7_2:75704920-75704939 None:intergenic 40.0%
! TCATCACTTGTTAGTGCTAG+TGG - chr7_2:75705003-75705022 None:intergenic 40.0%
!! GAGTTTGCTTCACCCTTTTA+AGG + chr7_2:75705042-75705061 Msa1077150:five_prime_UTR 40.0%
ACAACAACTACTACAGCAAG+TGG + chr7_2:75705538-75705557 Msa1077150:CDS 40.0%
!! ATTCTTGAGGTACTGACCAA+AGG - chr7_2:75705653-75705672 None:intergenic 40.0%
AAAGAGAGGTTGCATTTGCA+TGG - chr7_2:75705778-75705797 None:intergenic 40.0%
GGATTTGGATGCCCATAAAA+TGG - chr7_2:75706129-75706148 None:intergenic 40.0%
!!! CGTGCTGCTTTTGAAGAAAA+TGG + chr7_2:75706216-75706235 Msa1077150:CDS 40.0%
!!! GCTGCTTTTGAAGAAAATGG+AGG + chr7_2:75706219-75706238 Msa1077150:CDS 40.0%
! GCACCAAAAGGATTTGTTTC+TGG - chr7_2:75706249-75706268 None:intergenic 40.0%
TTCTGTCACAGCAAGTAAAC+AGG - chr7_2:75706532-75706551 None:intergenic 40.0%
TACTGGTAGTAGACTCATAG+TGG + chr7_2:75706622-75706641 Msa1077150:three_prime_UTR 40.0%
GCTGAGAAATGAGAATCACA+CGG - chr7_2:75706690-75706709 None:intergenic 40.0%
TCCATACATAGTGATCGATG+TGG + chr7_2:75706980-75706999 Msa1077150:three_prime_UTR 40.0%
TCCACATCGATCACTATGTA+TGG - chr7_2:75706984-75707003 None:intergenic 40.0%
GAAAAGTTGGACAGTAGGTT+TGG - chr7_2:75704894-75704913 None:intergenic 40.0%
GGAAAGAAAAGTTGGACAGT+AGG - chr7_2:75704899-75704918 None:intergenic 40.0%
!! TGTTAGGCTTTGGAGGAAAT+AGG - chr7_2:75704920-75704939 None:intergenic 40.0%
! TCATCACTTGTTAGTGCTAG+TGG - chr7_2:75705003-75705022 None:intergenic 40.0%
!! GAGTTTGCTTCACCCTTTTA+AGG + chr7_2:75705042-75705061 Msa1077150:five_prime_UTR 40.0%
ACAACAACTACTACAGCAAG+TGG + chr7_2:75705538-75705557 Msa1077150:CDS 40.0%
!! ATTCTTGAGGTACTGACCAA+AGG - chr7_2:75705653-75705672 None:intergenic 40.0%
AAAGAGAGGTTGCATTTGCA+TGG - chr7_2:75705778-75705797 None:intergenic 40.0%
GGATTTGGATGCCCATAAAA+TGG - chr7_2:75706129-75706148 None:intergenic 40.0%
!!! CGTGCTGCTTTTGAAGAAAA+TGG + chr7_2:75706216-75706235 Msa1077150:CDS 40.0%
!!! GCTGCTTTTGAAGAAAATGG+AGG + chr7_2:75706219-75706238 Msa1077150:CDS 40.0%
! GCACCAAAAGGATTTGTTTC+TGG - chr7_2:75706249-75706268 None:intergenic 40.0%
TTCTGTCACAGCAAGTAAAC+AGG - chr7_2:75706532-75706551 None:intergenic 40.0%
TACTGGTAGTAGACTCATAG+TGG + chr7_2:75706622-75706641 Msa1077150:three_prime_UTR 40.0%
GCTGAGAAATGAGAATCACA+CGG - chr7_2:75706690-75706709 None:intergenic 40.0%
TCCATACATAGTGATCGATG+TGG + chr7_2:75706980-75706999 Msa1077150:three_prime_UTR 40.0%
TCCACATCGATCACTATGTA+TGG - chr7_2:75706984-75707003 None:intergenic 40.0%
AGTTGGACAGTAGGTTTGGA+TGG - chr7_2:75704890-75704909 None:intergenic 45.0%
!! AGAGAAGTGTTAGGCTTTGG+AGG - chr7_2:75704927-75704946 None:intergenic 45.0%
!! GAGAGAGAAGTGTTAGGCTT+TGG - chr7_2:75704930-75704949 None:intergenic 45.0%
!! GAGAGAGAGAGAGAAGTGTT+AGG - chr7_2:75704936-75704955 None:intergenic 45.0%
GCTTCCCAAAACTATAGCTG+TGG - chr7_2:75705090-75705109 None:intergenic 45.0%
!! CTTGTTCTTCTAGGGTTCCT+TGG - chr7_2:75705290-75705309 None:intergenic 45.0%
! ACTGTTGGGACTGTTGATGA+TGG - chr7_2:75705590-75705609 None:intergenic 45.0%
GGCGTTTCTGATTCTCATAG+CGG - chr7_2:75705618-75705637 None:intergenic 45.0%
!! ATGTCCTCTAAGGCAAGCAT+GGG + chr7_2:75706164-75706183 Msa1077150:CDS 45.0%
AGACAGTGCTGTGTTTGTAC+TGG + chr7_2:75706605-75706624 Msa1077150:three_prime_UTR 45.0%
AGTTGGACAGTAGGTTTGGA+TGG - chr7_2:75704890-75704909 None:intergenic 45.0%
!! AGAGAAGTGTTAGGCTTTGG+AGG - chr7_2:75704927-75704946 None:intergenic 45.0%
!! GAGAGAGAAGTGTTAGGCTT+TGG - chr7_2:75704930-75704949 None:intergenic 45.0%
!! GAGAGAGAGAGAGAAGTGTT+AGG - chr7_2:75704936-75704955 None:intergenic 45.0%
GCTTCCCAAAACTATAGCTG+TGG - chr7_2:75705090-75705109 None:intergenic 45.0%
!! CTTGTTCTTCTAGGGTTCCT+TGG - chr7_2:75705290-75705309 None:intergenic 45.0%
! ACTGTTGGGACTGTTGATGA+TGG - chr7_2:75705590-75705609 None:intergenic 45.0%
GGCGTTTCTGATTCTCATAG+CGG - chr7_2:75705618-75705637 None:intergenic 45.0%
!! ATGTCCTCTAAGGCAAGCAT+GGG + chr7_2:75706164-75706183 Msa1077150:CDS 45.0%
AGACAGTGCTGTGTTTGTAC+TGG + chr7_2:75706605-75706624 Msa1077150:three_prime_UTR 45.0%
!!! TATGATTTTTAATATTATTT+TGG + chr7_2:75706036-75706055 Msa1077150:intron 5.0%
!! AGAAAAATTATATATATATA+TGG - chr7_2:75706850-75706869 None:intergenic 5.0%
!!! TATGATTTTTAATATTATTT+TGG + chr7_2:75706036-75706055 Msa1077150:intron 5.0%
!! AGAAAAATTATATATATATA+TGG - chr7_2:75706850-75706869 None:intergenic 5.0%
CAGTAGGTTTGGATGGAGAC+AGG - chr7_2:75704883-75704902 None:intergenic 50.0%
CTTTGCGCTTTGCAGATCCA+AGG - chr7_2:75705369-75705388 None:intergenic 50.0%
CTTGGATCTGCAAAGCGCAA+AGG + chr7_2:75705367-75705386 Msa1077150:five_prime_UTR 50.0%
GATGGTTGAAGCTGCAGATG+AGG - chr7_2:75705572-75705591 None:intergenic 50.0%
TCATAGCGGCTGCTACTGTT+GGG - chr7_2:75705604-75705623 None:intergenic 50.0%
AGAATCAGAAACGCCGTGAC+TGG + chr7_2:75705623-75705642 Msa1077150:CDS 50.0%
!! GACCAAAGGTGTTCCAGTCA+CGG - chr7_2:75705639-75705658 None:intergenic 50.0%
GAGGTGGACGATGATTCTTG+AGG - chr7_2:75705666-75705685 None:intergenic 50.0%
GTCCACCTCTTTCCCTATCT+AGG + chr7_2:75705677-75705696 Msa1077150:CDS 50.0%
CACCTAGATAGGGAAAGAGG+TGG - chr7_2:75705682-75705701 None:intergenic 50.0%
CTGCACCTAGATAGGGAAAG+AGG - chr7_2:75705685-75705704 None:intergenic 50.0%
CTTTCCCTATCTAGGTGCAG+CGG + chr7_2:75705685-75705704 Msa1077150:CDS 50.0%
CACCATGTCCATGTCCTCTA+AGG + chr7_2:75706154-75706173 Msa1077150:CDS 50.0%
TGCCTTAGAGGACATGGACA+TGG - chr7_2:75706159-75706178 None:intergenic 50.0%
CATGCTTGCCTTAGAGGACA+TGG - chr7_2:75706165-75706184 None:intergenic 50.0%
!! CATGTCCTCTAAGGCAAGCA+TGG + chr7_2:75706163-75706182 Msa1077150:CDS 50.0%
!! TGTCCTCTAAGGCAAGCATG+GGG + chr7_2:75706165-75706184 Msa1077150:CDS 50.0%
GGAAGCCTTGATGCACTCAT+AGG + chr7_2:75706186-75706205 Msa1077150:CDS 50.0%
GACGACCTATGAGTGCATCA+AGG - chr7_2:75706194-75706213 None:intergenic 50.0%
GAAGATCACGAACTTCGCGA+AGG - chr7_2:75706290-75706309 None:intergenic 50.0%
!! ACTTGCTGTTGCTGTGATGG+TGG - chr7_2:75706360-75706379 None:intergenic 50.0%
!! GGAACTTGCTGTTGCTGTGA+TGG - chr7_2:75706363-75706382 None:intergenic 50.0%
CAGTAGGTTTGGATGGAGAC+AGG - chr7_2:75704883-75704902 None:intergenic 50.0%
CTTTGCGCTTTGCAGATCCA+AGG - chr7_2:75705369-75705388 None:intergenic 50.0%
CTTGGATCTGCAAAGCGCAA+AGG + chr7_2:75705367-75705386 Msa1077150:five_prime_UTR 50.0%
GATGGTTGAAGCTGCAGATG+AGG - chr7_2:75705572-75705591 None:intergenic 50.0%
TCATAGCGGCTGCTACTGTT+GGG - chr7_2:75705604-75705623 None:intergenic 50.0%
AGAATCAGAAACGCCGTGAC+TGG + chr7_2:75705623-75705642 Msa1077150:CDS 50.0%
!! GACCAAAGGTGTTCCAGTCA+CGG - chr7_2:75705639-75705658 None:intergenic 50.0%
GAGGTGGACGATGATTCTTG+AGG - chr7_2:75705666-75705685 None:intergenic 50.0%
GTCCACCTCTTTCCCTATCT+AGG + chr7_2:75705677-75705696 Msa1077150:CDS 50.0%
CACCTAGATAGGGAAAGAGG+TGG - chr7_2:75705682-75705701 None:intergenic 50.0%
CTGCACCTAGATAGGGAAAG+AGG - chr7_2:75705685-75705704 None:intergenic 50.0%
CTTTCCCTATCTAGGTGCAG+CGG + chr7_2:75705685-75705704 Msa1077150:CDS 50.0%
CACCATGTCCATGTCCTCTA+AGG + chr7_2:75706154-75706173 Msa1077150:CDS 50.0%
TGCCTTAGAGGACATGGACA+TGG - chr7_2:75706159-75706178 None:intergenic 50.0%
CATGCTTGCCTTAGAGGACA+TGG - chr7_2:75706165-75706184 None:intergenic 50.0%
!! CATGTCCTCTAAGGCAAGCA+TGG + chr7_2:75706163-75706182 Msa1077150:CDS 50.0%
!! TGTCCTCTAAGGCAAGCATG+GGG + chr7_2:75706165-75706184 Msa1077150:CDS 50.0%
GGAAGCCTTGATGCACTCAT+AGG + chr7_2:75706186-75706205 Msa1077150:CDS 50.0%
GACGACCTATGAGTGCATCA+AGG - chr7_2:75706194-75706213 None:intergenic 50.0%
GAAGATCACGAACTTCGCGA+AGG - chr7_2:75706290-75706309 None:intergenic 50.0%
!! ACTTGCTGTTGCTGTGATGG+TGG - chr7_2:75706360-75706379 None:intergenic 50.0%
!! GGAACTTGCTGTTGCTGTGA+TGG - chr7_2:75706363-75706382 None:intergenic 50.0%
CTCATAGCGGCTGCTACTGT+TGG - chr7_2:75705605-75705624 None:intergenic 55.0%
TGCACCGCTGCACCTAGATA+GGG - chr7_2:75705692-75705711 None:intergenic 55.0%
!! GGACATGGTGCTGGTGGATT+TGG - chr7_2:75706144-75706163 None:intergenic 55.0%
AGAGGACATGGACATGGTGC+TGG - chr7_2:75706153-75706172 None:intergenic 55.0%
CTTCCCCATGCTTGCCTTAG+AGG - chr7_2:75706171-75706190 None:intergenic 55.0%
CTCACAGCTCGAGCACCAAA+AGG - chr7_2:75706261-75706280 None:intergenic 55.0%
!!! CTTTTGGTGCTCGAGCTGTG+AGG + chr7_2:75706259-75706278 Msa1077150:CDS 55.0%
CAAGTTCCACCACCAGCACA+AGG + chr7_2:75706375-75706394 Msa1077150:CDS 55.0%
GTTGCACTTGCACCTTGTGC+TGG - chr7_2:75706390-75706409 None:intergenic 55.0%
CTCATAGCGGCTGCTACTGT+TGG - chr7_2:75705605-75705624 None:intergenic 55.0%
TGCACCGCTGCACCTAGATA+GGG - chr7_2:75705692-75705711 None:intergenic 55.0%
!! GGACATGGTGCTGGTGGATT+TGG - chr7_2:75706144-75706163 None:intergenic 55.0%
AGAGGACATGGACATGGTGC+TGG - chr7_2:75706153-75706172 None:intergenic 55.0%
CTTCCCCATGCTTGCCTTAG+AGG - chr7_2:75706171-75706190 None:intergenic 55.0%
CTCACAGCTCGAGCACCAAA+AGG - chr7_2:75706261-75706280 None:intergenic 55.0%
!!! CTTTTGGTGCTCGAGCTGTG+AGG + chr7_2:75706259-75706278 Msa1077150:CDS 55.0%
CAAGTTCCACCACCAGCACA+AGG + chr7_2:75706375-75706394 Msa1077150:CDS 55.0%
GTTGCACTTGCACCTTGTGC+TGG - chr7_2:75706390-75706409 None:intergenic 55.0%
CGCCGTGACTGGAACACCTT+TGG + chr7_2:75705634-75705653 Msa1077150:CDS 60.0%
GTGCACCGCTGCACCTAGAT+AGG - chr7_2:75705693-75705712 None:intergenic 60.0%
! GGACATGGACATGGTGCTGG+TGG - chr7_2:75706150-75706169 None:intergenic 60.0%
! CTTGCACCTTGTGCTGGTGG+TGG - chr7_2:75706384-75706403 None:intergenic 60.0%
GCACTTGCACCTTGTGCTGG+TGG - chr7_2:75706387-75706406 None:intergenic 60.0%
CGCCGTGACTGGAACACCTT+TGG + chr7_2:75705634-75705653 Msa1077150:CDS 60.0%
GTGCACCGCTGCACCTAGAT+AGG - chr7_2:75705693-75705712 None:intergenic 60.0%
! GGACATGGACATGGTGCTGG+TGG - chr7_2:75706150-75706169 None:intergenic 60.0%
! CTTGCACCTTGTGCTGGTGG+TGG - chr7_2:75706384-75706403 None:intergenic 60.0%
GCACTTGCACCTTGTGCTGG+TGG - chr7_2:75706387-75706406 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75704874 75707028 75704874 ID=Msa1077150;Name=Msa1077150
chr7_2 mRNA 75704874 75707028 75704874 ID=Msa1077150-mRNA-1;Parent=Msa1077150;Name=Msa1077150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=466|1|1|1|0.5|0.33|3|612|213
chr7_2 exon 75704874 75705204 75704874 ID=Msa1077150-mRNA-1:exon:18107;Parent=Msa1077150-mRNA-1
chr7_2 exon 75705292 75705731 75705292 ID=Msa1077150-mRNA-1:exon:18108;Parent=Msa1077150-mRNA-1
chr7_2 exon 75706080 75707028 75706080 ID=Msa1077150-mRNA-1:exon:18109;Parent=Msa1077150-mRNA-1
chr7_2 five_prime_UTR 75704874 75705204 75704874 ID=Msa1077150-mRNA-1:five_prime_utr;Parent=Msa1077150-mRNA-1
chr7_2 five_prime_UTR 75705292 75705426 75705292 ID=Msa1077150-mRNA-1:five_prime_utr;Parent=Msa1077150-mRNA-1
chr7_2 CDS 75705427 75705731 75705427 ID=Msa1077150-mRNA-1:cds;Parent=Msa1077150-mRNA-1
chr7_2 CDS 75706080 75706416 75706080 ID=Msa1077150-mRNA-1:cds;Parent=Msa1077150-mRNA-1
chr7_2 three_prime_UTR 75706417 75707028 75706417 ID=Msa1077150-mRNA-1:three_prime_utr;Parent=Msa1077150-mRNA-1
Gene Sequence

>Msa1077150

ATGGATTCAATTCAAGAATTTATAGGGGCATGTAACAATGAAAACATGACCTGCAACTTCATGAATAACAACAACAACAACACTATAAGTACAACCACAACAAGCTTAACAACAACAACTACTACAGCAAGTGGAAGCTCTTCCTCATCTGCAGCTTCAACCATCATCAACAGTCCCAACAGTAGCAGCCGCTATGAGAATCAGAAACGCCGTGACTGGAACACCTTTGGTCAGTACCTCAAGAATCATCGTCCACCTCTTTCCCTATCTAGGTGCAGCGGTGCACATGTTCTTGAATTTCTAAGGTATTTGGATCAATTTGGGAAGACAAAAGTTCACACACCAATTTGTCCATTTTATGGGCATCCAAATCCACCAGCACCATGTCCATGTCCTCTAAGGCAAGCATGGGGAAGCCTTGATGCACTCATAGGTCGTCTTCGTGCTGCTTTTGAAGAAAATGGAGGAAAACCAGAAACAAATCCTTTTGGTGCTCGAGCTGTGAGGCTCTACCTTCGCGAAGTTCGTGATCTTCAATCAAAAGCAAGAGGTATTAGTTACGAGAAAAAGAAAAGAAAGCGTCCACCATCACAGCAACAGCAAGTTCCACCACCAGCACAAGGTGCAAGTGCAACTCATTAG

Protein sequence

>Msa1077150

MDSIQEFIGACNNENMTCNFMNNNNNNTISTTTTSLTTTTTTASGSSSSSAASTIINSPNSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPSQQQQVPPPAQGASATH*