Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088940 | XP_003597635.1 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 5.31e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088940 | sp|Q9M0E2|RL282_ARATH | 72.028 | 143 | 40 | 0 | 1 | 143 | 1 | 143 | 1.28e-72 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088940 | G7IUL4 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 2.54e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1088940 | 0.812138 | 4.929166e-51 | -8.615850e-47 |
| Msa0003780 | Msa1088940 | 0.849442 | 3.225309e-60 | -8.615850e-47 |
| Msa0027260 | Msa1088940 | 0.807379 | 5.203226e-50 | -8.615850e-47 |
| Msa0077530 | Msa1088940 | 0.801011 | 1.101137e-48 | -8.615850e-47 |
| Msa0091880 | Msa1088940 | 0.851088 | 1.114352e-60 | -8.615850e-47 |
| Msa0146340 | Msa1088940 | 0.845273 | 4.500447e-59 | -8.615850e-47 |
| Msa0187930 | Msa1088940 | 0.808542 | 2.943154e-50 | -8.615850e-47 |
| Msa0194540 | Msa1088940 | 0.804612 | 1.987095e-49 | -8.615850e-47 |
| Msa0366890 | Msa1088940 | 0.802487 | 5.481351e-49 | -8.615850e-47 |
| Msa0385580 | Msa1088940 | 0.802149 | 6.432624e-49 | -8.615850e-47 |
| Msa1013400 | Msa1088940 | 0.802144 | 6.449915e-49 | -8.615850e-47 |
| Msa1043690 | Msa1088940 | 0.855453 | 6.243908e-62 | -8.615850e-47 |
| Msa1081150 | Msa1088940 | 0.811993 | 5.301519e-51 | -8.615850e-47 |
| Msa1088940 | Msa1215820 | 0.808738 | 2.672485e-50 | -8.615850e-47 |
| Msa1088940 | Msa1257510 | 0.814978 | 1.169738e-51 | -8.615850e-47 |
| Msa1088940 | Msa1374120 | 0.859907 | 2.988824e-63 | -8.615850e-47 |
| Msa1088940 | Msa1382620 | 0.839443 | 1.579646e-57 | -8.615850e-47 |
| Msa1088940 | Msa1407070 | 0.933389 | 2.023350e-95 | -8.615850e-47 |
| Msa1088940 | Msa1448690 | 0.817586 | 3.053528e-52 | -8.615850e-47 |
| Msa0244780 | Msa1088940 | 0.807657 | 4.540681e-50 | -8.615850e-47 |
| Msa0250820 | Msa1088940 | 0.823395 | 1.417682e-53 | -8.615850e-47 |
| Msa0250870 | Msa1088940 | 0.813828 | 2.100235e-51 | -8.615850e-47 |
| Msa0264010 | Msa1088940 | 0.843285 | 1.539791e-58 | -8.615850e-47 |
| Msa0268130 | Msa1088940 | 0.817125 | 3.878380e-52 | -8.615850e-47 |
| Msa0298990 | Msa1088940 | 0.819400 | 1.184846e-52 | -8.615850e-47 |
| Msa0327330 | Msa1088940 | 0.805158 | 1.527736e-49 | -8.615850e-47 |
| Msa0953310 | Msa1088940 | 0.812736 | 3.648069e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088940 | MtrunA17_Chr2g0330561 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 4.88e-104 | 293 |
| Msa1088940 | MtrunA17_Chr8g0341511 | 90.909 | 143 | 13 | 0 | 1 | 143 | 1 | 143 | 2.30e-94 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088940 | AT4G29410.1 | 72.028 | 143 | 40 | 0 | 1 | 143 | 1 | 143 | 1.30e-73 | 216 |
| Msa1088940 | AT4G29410.2 | 72.028 | 143 | 40 | 0 | 1 | 143 | 1 | 143 | 1.30e-73 | 216 |
| Msa1088940 | AT2G19730.2 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 9.98e-73 | 214 |
| Msa1088940 | AT2G19730.1 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 9.98e-73 | 214 |
| Msa1088940 | AT2G19730.3 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 9.98e-73 | 214 |
Find 54 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATCCAAAGCAAATT+AGG | 0.196350 | 7_3:+2308327 | None:intergenic |
| CCTGTTCAACATTGATTAAA+TGG | 0.216671 | 7_3:-2311715 | None:intergenic |
| GATTTATAGCAAAATGAAAT+TGG | 0.232438 | 7_3:-2308354 | None:intergenic |
| TTAAGATTGTAAAGATTATT+AGG | 0.248943 | 7_3:-2308641 | None:intergenic |
| ACCCTAATTTGCTTTGGATT+TGG | 0.255167 | 7_3:-2308329 | None:intergenic |
| AGAATGCATAAACTACAAAA+AGG | 0.256187 | 7_3:-2311446 | None:intergenic |
| TCCCATCAAACCTTTCAAAT+TGG | 0.271284 | 7_3:-2311738 | None:intergenic |
| CAAGGTTGAGTGCTGTTAAT+AGG | 0.286054 | 7_3:+2311314 | Msa1088940:CDS |
| CATCTTATTATACTTTAAAC+TGG | 0.289137 | 7_3:+2311543 | Msa1088940:three_prime_UTR |
| CAGTACCTGGACCACTTGTT+TGG | 0.329181 | 7_3:+2308540 | Msa1088940:CDS |
| TTGGAAACCCTAATTTGCTT+TGG | 0.357324 | 7_3:-2308335 | None:intergenic |
| TCCAAATCCAAAGCAAATTA+GGG | 0.361271 | 7_3:+2308328 | Msa1088940:five_prime_UTR |
| ATACTAACCAGAGTATTTGT+AGG | 0.368013 | 7_3:-2308666 | None:intergenic |
| TAGAATACTGGAGTTCAGTT+TGG | 0.380104 | 7_3:+2311481 | Msa1088940:three_prime_UTR |
| GAACTCCAGTATTCTAGAAT+AGG | 0.383776 | 7_3:-2311474 | None:intergenic |
| AAACTATAGTCTATGCCATT+TGG | 0.386715 | 7_3:-2311608 | None:intergenic |
| GGCCAATTTGAAAGGTTTGA+TGG | 0.397934 | 7_3:+2311736 | Msa1088940:three_prime_UTR |
| CCATTTAATCAATGTTGAAC+AGG | 0.401273 | 7_3:+2311715 | Msa1088940:three_prime_UTR |
| AGAACCCTATTCTAGAATAC+TGG | 0.410113 | 7_3:+2311469 | Msa1088940:three_prime_UTR |
| CTGTTATGAAGAAAGAGTTT+AGG | 0.418419 | 7_3:+2309351 | Msa1088940:CDS |
| AGTACCTGGACCACTTGTTT+GGG | 0.420976 | 7_3:+2308541 | Msa1088940:CDS |
| GAGTGAGATTTGAGAAGAAG+AGG | 0.422905 | 7_3:-2308391 | None:intergenic |
| GGCTAAGGCTGTGCAAAATC+AGG | 0.425465 | 7_3:+2309379 | Msa1088940:CDS |
| AGCCTCAGAGTTGCAAAGTC+TGG | 0.433352 | 7_3:+2311337 | Msa1088940:CDS |
| AACTCCAGTATTCTAGAATA+GGG | 0.453784 | 7_3:-2311473 | None:intergenic |
| CATGTCATAATTAAACAATC+TGG | 0.459300 | 7_3:-2311778 | None:intergenic |
| AAGAAGATGGCAACAGTACC+TGG | 0.461908 | 7_3:+2308527 | Msa1088940:exon |
| CAAAGATCAGTCTGTGTTGT+TGG | 0.477149 | 7_3:+2309277 | Msa1088940:CDS |
| GCCAATTTGAAAGGTTTGAT+GGG | 0.480399 | 7_3:+2311737 | Msa1088940:three_prime_UTR |
| ACTGTAACTATTCAGTCTGC+TGG | 0.486689 | 7_3:+2309254 | Msa1088940:CDS |
| CTGGCGCTAAGAAGAGAAAC+AGG | 0.489005 | 7_3:+2311356 | Msa1088940:CDS |
| GAAGAAAGAGTTTAGGAGGA+TGG | 0.489919 | 7_3:+2309358 | Msa1088940:CDS |
| AATACCTTGGATTGTTGTTG+AGG | 0.511851 | 7_3:-2308415 | None:intergenic |
| GTTGAACAGGCCAATTTGAA+AGG | 0.517504 | 7_3:+2311728 | Msa1088940:three_prime_UTR |
| CTTAACTCCTACAAATACTC+TGG | 0.532818 | 7_3:+2308659 | Msa1088940:CDS |
| TTATGAAGAAAGAGTTTAGG+AGG | 0.533464 | 7_3:+2309354 | Msa1088940:CDS |
| GATTTGTGAAGCAAAGCAGC+AGG | 0.534387 | 7_3:-2309329 | None:intergenic |
| AAGAAGAGAAACAGGCATGC+AGG | 0.536717 | 7_3:+2311364 | Msa1088940:CDS |
| AGAGTTTAGGAGGATGGCTA+AGG | 0.539424 | 7_3:+2309364 | Msa1088940:CDS |
| ATCTCCCAAACAAGTGGTCC+AGG | 0.541178 | 7_3:-2308545 | None:intergenic |
| ATCTTATTATACTTTAAACT+GGG | 0.543535 | 7_3:+2311544 | Msa1088940:three_prime_UTR |
| CTCTCCTCAACAACAATCCA+AGG | 0.551487 | 7_3:+2308411 | Msa1088940:five_prime_UTR |
| TTAAGAAGGCGGCTCTTGCA+AGG | 0.554765 | 7_3:+2311296 | Msa1088940:CDS |
| CAGTTTAAAGTATAATAAGA+TGG | 0.561262 | 7_3:-2311542 | None:intergenic |
| AGAGCCGCCTTCTTAAGATC+AGG | 0.566181 | 7_3:-2311289 | None:intergenic |
| CTACAGACCTGATCTTAAGA+AGG | 0.570922 | 7_3:+2311282 | Msa1088940:CDS |
| CGCCAGACTTTGCAACTCTG+AGG | 0.579160 | 7_3:-2311339 | None:intergenic |
| GGTCCGATTAATTGAAGGAG+AGG | 0.586322 | 7_3:-2311631 | None:intergenic |
| TTCACGATCTCCCAAACAAG+TGG | 0.590177 | 7_3:-2308551 | None:intergenic |
| TCATAATTAAACAATCTGGC+CGG | 0.592265 | 7_3:-2311774 | None:intergenic |
| TGTGATGTTGAGTGTCAACT+AGG | 0.622378 | 7_3:-2311686 | None:intergenic |
| TGTTGGCAACCACCAAGCCA+AGG | 0.638986 | 7_3:+2309294 | Msa1088940:CDS |
| TTGTTTGGGAGATCGTGAAG+AGG | 0.651216 | 7_3:+2308555 | Msa1088940:CDS |
| CAGACCTGATCTTAAGAAGG+CGG | 0.695458 | 7_3:+2311285 | Msa1088940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATAGTTTTATGATTAA+TGG | + | chr7_3:2308708-2308727 | Msa1088940:intron | 10.0% |
| !!! | ATAATAGTTTTATGATTAAT+GGG | + | chr7_3:2308709-2308728 | Msa1088940:intron | 10.0% |
| !!! | TAGCAATTTTAATTTTTTTA+TGG | + | chr7_3:2309174-2309193 | Msa1088940:intron | 10.0% |
| !! | ATTTCTAATTCAAAATAATT+TGG | - | chr7_3:2309620-2309639 | None:intergenic | 10.0% |
| !! | TTAAGATTGTAAAGATTATT+AGG | - | chr7_3:2308644-2308663 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATATTCTGTGA+TGG | + | chr7_3:2308755-2308774 | Msa1088940:intron | 15.0% |
| !!! | TGTTTTTATTATGGTATAAT+AGG | + | chr7_3:2309215-2309234 | Msa1088940:intron | 15.0% |
| !! | TAGTTCAAAAATAAAACATT+TGG | + | chr7_3:2309712-2309731 | Msa1088940:intron | 15.0% |
| !!! | AAACTATTTTGAATTATAAG+AGG | - | chr7_3:2310504-2310523 | None:intergenic | 15.0% |
| !!! | AAAATAATTTTGTACCTATA+TGG | + | chr7_3:2310635-2310654 | Msa1088940:intron | 15.0% |
| !! | AAACTTGAATTAAAAAATCA+AGG | - | chr7_3:2311015-2311034 | None:intergenic | 15.0% |
| !!! | TTATTCCAAAATAATTTGTT+GGG | - | chr7_3:2311094-2311113 | None:intergenic | 15.0% |
| !!! | ATTATTCCAAAATAATTTGT+TGG | - | chr7_3:2311095-2311114 | None:intergenic | 15.0% |
| !!! | ACAAATTATTTTGGAATAAT+TGG | + | chr7_3:2311095-2311114 | Msa1088940:intron | 15.0% |
| !! | ATCTTATTATACTTTAAACT+GGG | + | chr7_3:2311544-2311563 | Msa1088940:three_prime_UTR | 15.0% |
| !!! | TTCAATTTAAATTTTCCAAA+TGG | + | chr7_3:2311593-2311612 | Msa1088940:three_prime_UTR | 15.0% |
| !! | GATTTATAGCAAAATGAAAT+TGG | - | chr7_3:2308357-2308376 | None:intergenic | 20.0% |
| !!! | TTATCTTTGATTTTCAGATT+TGG | + | chr7_3:2308459-2308478 | Msa1088940:intron | 20.0% |
| !! | TTTGCATCTTAAAGTATAAT+GGG | + | chr7_3:2308821-2308840 | Msa1088940:intron | 20.0% |
| !! | ATCACATTTGATTAAAACTT+AGG | - | chr7_3:2309063-2309082 | None:intergenic | 20.0% |
| !!! | CTTACTTCATGTTTTTATTA+TGG | + | chr7_3:2309206-2309225 | Msa1088940:intron | 20.0% |
| !! | TTATTATGGTATAATAGGTT+TGG | + | chr7_3:2309220-2309239 | Msa1088940:intron | 20.0% |
| !!! | GTTTTCATATTTCACAATAT+TGG | + | chr7_3:2309492-2309511 | Msa1088940:intron | 20.0% |
| !!! | AGTTGAAAATTGTTTTGAAT+TGG | + | chr7_3:2309588-2309607 | Msa1088940:intron | 20.0% |
| !! | TTAGAAATATTCACGATAAT+TGG | + | chr7_3:2309632-2309651 | Msa1088940:intron | 20.0% |
| !!! | GTTTTATTTTTGAACTAATC+CGG | - | chr7_3:2309709-2309728 | None:intergenic | 20.0% |
| !! | AACATACAGATAATTTGAAT+GGG | - | chr7_3:2310009-2310028 | None:intergenic | 20.0% |
| !! | AAACATACAGATAATTTGAA+TGG | - | chr7_3:2310010-2310029 | None:intergenic | 20.0% |
| !! | ACAAAATGACTTAGATAAAA+TGG | - | chr7_3:2310236-2310255 | None:intergenic | 20.0% |
| !! | ATAAAAAGGTTAGATTCATT+AGG | - | chr7_3:2310528-2310547 | None:intergenic | 20.0% |
| !! | ACAATAAACAAGAGATAAAA+AGG | - | chr7_3:2310542-2310561 | None:intergenic | 20.0% |
| !!! | CAGTTTAAAGTATAATAAGA+TGG | - | chr7_3:2311545-2311564 | None:intergenic | 20.0% |
| !! | CATCTTATTATACTTTAAAC+TGG | + | chr7_3:2311543-2311562 | Msa1088940:three_prime_UTR | 20.0% |
| !!! | ATTTTCGTTTTGTGCTTTTT+AGG | + | chr7_3:2308435-2308454 | Msa1088940:intron | 25.0% |
| !!! | TTTTCGTTTTGTGCTTTTTA+GGG | + | chr7_3:2308436-2308455 | Msa1088940:intron | 25.0% |
| !!! | TCTTTTTTGGTTAAAGAGTT+TGG | + | chr7_3:2308584-2308603 | Msa1088940:CDS | 25.0% |
| ! | CTTTGCATCTTAAAGTATAA+TGG | + | chr7_3:2308820-2308839 | Msa1088940:intron | 25.0% |
| ! | TAAGCATTTATTATACTGCT+TGG | - | chr7_3:2309016-2309035 | None:intergenic | 25.0% |
| !! | AATAGTTACAGTTTTCTTGT+TGG | - | chr7_3:2309246-2309265 | None:intergenic | 25.0% |
| ! | ATTCATATAGTTGTCATTCT+AGG | + | chr7_3:2309527-2309546 | Msa1088940:intron | 25.0% |
| !!! | GAAAATTGTTTTGAATTGGT+TGG | + | chr7_3:2309592-2309611 | Msa1088940:intron | 25.0% |
| ! | AAAATTCGAACAAAGAAAGA+GGG | - | chr7_3:2309788-2309807 | None:intergenic | 25.0% |
| !!! | AGTTTTAAGTTACAAAAGAG+AGG | - | chr7_3:2309970-2309989 | None:intergenic | 25.0% |
| ! | ATTTACACAGATAAATCACA+TGG | - | chr7_3:2310312-2310331 | None:intergenic | 25.0% |
| ! | GGATTCTTCTTATATGTTAA+CGG | - | chr7_3:2310687-2310706 | None:intergenic | 25.0% |
| ! | ATATAAGAAGAATCCTTATG+TGG | + | chr7_3:2310692-2310711 | Msa1088940:intron | 25.0% |
| ! | TATAAGAAGAATCCTTATGT+GGG | + | chr7_3:2310693-2310712 | Msa1088940:intron | 25.0% |
| ! | ACATTATGAAGAGATCAAAA+GGG | - | chr7_3:2310791-2310810 | None:intergenic | 25.0% |
| ! | TAAATGCAAAATAGCATATG+AGG | - | chr7_3:2310830-2310849 | None:intergenic | 25.0% |
| !!! | AAGTTTTTATTTAGAGAAGC+TGG | + | chr7_3:2311029-2311048 | Msa1088940:intron | 25.0% |
| ! | AATGCATAAACTACAAAAAG+GGG | - | chr7_3:2311447-2311466 | None:intergenic | 25.0% |
| ! | GAATGCATAAACTACAAAAA+GGG | - | chr7_3:2311448-2311467 | None:intergenic | 25.0% |
| ! | AGAATGCATAAACTACAAAA+AGG | - | chr7_3:2311449-2311468 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTTAATCTAGT+TGG | - | chr7_3:2311663-2311682 | None:intergenic | 25.0% |
| ! | CATGTCATAATTAAACAATC+TGG | - | chr7_3:2311781-2311800 | None:intergenic | 25.0% |
| TCCAAATCCAAAGCAAATTA+GGG | + | chr7_3:2308328-2308347 | Msa1088940:five_prime_UTR | 30.0% | |
| CTAGATCTGTATTGTGTTAT+AGG | + | chr7_3:2308489-2308508 | Msa1088940:intron | 30.0% | |
| ! | ATACTAACCAGAGTATTTGT+AGG | - | chr7_3:2308669-2308688 | None:intergenic | 30.0% |
| !!! | ATGGCTGTTTTTGTTGTTAA+AGG | + | chr7_3:2308774-2308793 | Msa1088940:intron | 30.0% |
| !!! | TGGCTGTTTTTGTTGTTAAA+GGG | + | chr7_3:2308775-2308794 | Msa1088940:intron | 30.0% |
| CTTGTTGAAATTAGTGAAGT+TGG | + | chr7_3:2309097-2309116 | Msa1088940:intron | 30.0% | |
| CTGTTATGAAGAAAGAGTTT+AGG | + | chr7_3:2309351-2309370 | Msa1088940:CDS | 30.0% | |
| TTATGAAGAAAGAGTTTAGG+AGG | + | chr7_3:2309354-2309373 | Msa1088940:CDS | 30.0% | |
| GAATTAGTGGTTGGAAAATT+CGG | + | chr7_3:2309458-2309477 | Msa1088940:intron | 30.0% | |
| ! | ATCTAGTCAAATCTTTTGCT+AGG | + | chr7_3:2309558-2309577 | Msa1088940:intron | 30.0% |
| !! | GTTGTTTCAGTGCATTTTAA+TGG | + | chr7_3:2309675-2309694 | Msa1088940:intron | 30.0% |
| !! | CATTTTAATGGAAATACTGC+CGG | + | chr7_3:2309687-2309706 | Msa1088940:intron | 30.0% |
| AAATTCGAACAAAGAAAGAG+GGG | - | chr7_3:2309787-2309806 | None:intergenic | 30.0% | |
| GAAAATTCGAACAAAGAAAG+AGG | - | chr7_3:2309789-2309808 | None:intergenic | 30.0% | |
| TGCAATATTATTGTTACGCT+TGG | + | chr7_3:2309865-2309884 | Msa1088940:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr7_3:2310122-2310141 | Msa1088940:intron | 30.0% |
| TTCAATTATCAGATGTCGAA+AGG | - | chr7_3:2310190-2310209 | None:intergenic | 30.0% | |
| AGATAAATCACATGGCAATT+AGG | - | chr7_3:2310304-2310323 | None:intergenic | 30.0% | |
| GGATTCATCTTATATGTTAG+AGG | - | chr7_3:2310390-2310409 | None:intergenic | 30.0% | |
| ATATAAGATGAATCCCTATG+TGG | + | chr7_3:2310395-2310414 | Msa1088940:intron | 30.0% | |
| TATAAGATGAATCCCTATGT+GGG | + | chr7_3:2310396-2310415 | Msa1088940:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr7_3:2310122-2310141 | Msa1088940:intron | 30.0% |
| TTGAATTATAAGAGGTCACT+AGG | - | chr7_3:2310496-2310515 | None:intergenic | 30.0% | |
| ATTTACACAGATAAATCGCA+TGG | - | chr7_3:2310614-2310633 | None:intergenic | 30.0% | |
| ! | ATTTTGTACCTATATGGACT+AGG | + | chr7_3:2310641-2310660 | Msa1088940:intron | 30.0% |
| ! | TGAAATATACTTGTTACGCT+TGG | + | chr7_3:2310725-2310744 | Msa1088940:intron | 30.0% |
| GACATTATGAAGAGATCAAA+AGG | - | chr7_3:2310792-2310811 | None:intergenic | 30.0% | |
| ATTTCATTGAAGAAACCCAA+AGG | - | chr7_3:2310945-2310964 | None:intergenic | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr7_3:2310122-2310141 | Msa1088940:intron | 30.0% |
| ! | AGTCATTTGCTGCAAAATAA+AGG | - | chr7_3:2311060-2311079 | None:intergenic | 30.0% |
| ! | TCAAATTAGCTCATCGATTA+AGG | - | chr7_3:2311222-2311241 | None:intergenic | 30.0% |
| !! | AACTCCAGTATTCTAGAATA+GGG | - | chr7_3:2311476-2311495 | None:intergenic | 30.0% |
| AAACTATAGTCTATGCCATT+TGG | - | chr7_3:2311611-2311630 | None:intergenic | 30.0% | |
| TTTCCTCTCCTTCAATTAAT+CGG | + | chr7_3:2311628-2311647 | Msa1088940:intron | 30.0% | |
| AATTAGGTCCGATTAATTGA+AGG | - | chr7_3:2311639-2311658 | None:intergenic | 30.0% | |
| TGTTAATCTAGTTGGCAATT+AGG | - | chr7_3:2311655-2311674 | None:intergenic | 30.0% | |
| ! | CCTGTTCAACATTGATTAAA+TGG | - | chr7_3:2311718-2311737 | None:intergenic | 30.0% |
| CCATTTAATCAATGTTGAAC+AGG | + | chr7_3:2311715-2311734 | Msa1088940:three_prime_UTR | 30.0% | |
| TCATAATTAAACAATCTGGC+CGG | - | chr7_3:2311777-2311796 | None:intergenic | 30.0% | |
| !! | ACCCTAATTTGCTTTGGATT+TGG | - | chr7_3:2308332-2308351 | None:intergenic | 35.0% |
| !! | TTGGAAACCCTAATTTGCTT+TGG | - | chr7_3:2308338-2308357 | None:intergenic | 35.0% |
| ! | AATACCTTGGATTGTTGTTG+AGG | - | chr7_3:2308418-2308437 | None:intergenic | 35.0% |
| AGCACAAAACGAAAATACCT+TGG | - | chr7_3:2308431-2308450 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | + | chr7_3:2308514-2308533 | Msa1088940:exon | 35.0% | |
| !!! | GAAGAGGAACAACTCTTTTT+TGG | + | chr7_3:2308571-2308590 | Msa1088940:CDS | 35.0% |
| CTTAACTCCTACAAATACTC+TGG | + | chr7_3:2308659-2308678 | Msa1088940:CDS | 35.0% | |
| TGTTGTTAAAGGGTTCTGTT+TGG | + | chr7_3:2308785-2308804 | Msa1088940:intron | 35.0% | |
| TGTTAATGCCATGTGTATGA+TGG | + | chr7_3:2309143-2309162 | Msa1088940:intron | 35.0% | |
| CTATGAAACCATCATACACA+TGG | - | chr7_3:2309154-2309173 | None:intergenic | 35.0% | |
| TCCACACAAAGAACAAGAAT+CGG | - | chr7_3:2309440-2309459 | None:intergenic | 35.0% | |
| TGTTCTTTGTGTGGAATTAG+TGG | + | chr7_3:2309445-2309464 | Msa1088940:intron | 35.0% | |
| ATAAAACATTTGGAAACGCG+TGG | + | chr7_3:2309722-2309741 | Msa1088940:intron | 35.0% | |
| TGTAAGAAGGATCCATTTGT+TGG | + | chr7_3:2309832-2309851 | Msa1088940:intron | 35.0% | |
| GTAAGAAGGATCCATTTGTT+GGG | + | chr7_3:2309833-2309852 | Msa1088940:intron | 35.0% | |
| CACTGAATAAACCCAACAAA+TGG | - | chr7_3:2309847-2309866 | None:intergenic | 35.0% | |
| ! | TAATTTGAATGGGAGCGTAA+GGG | - | chr7_3:2309999-2310018 | None:intergenic | 35.0% |
| ! | ATAATTTGAATGGGAGCGTA+AGG | - | chr7_3:2310000-2310019 | None:intergenic | 35.0% |
| TCATTGAAGAAACCCACATA+GGG | - | chr7_3:2310105-2310124 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr7_3:2310106-2310125 | None:intergenic | 35.0% | |
| !!! | AACCTAACATCCCTTTTTTC+TGG | + | chr7_3:2310266-2310285 | Msa1088940:intron | 35.0% |
| AACCAGATCACCAGAAAAAA+GGG | - | chr7_3:2310279-2310298 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | chr7_3:2310105-2310124 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr7_3:2310106-2310125 | None:intergenic | 35.0% | |
| ! | AACCTGGTCTCTATTTTATC+TGG | + | chr7_3:2310565-2310584 | Msa1088940:intron | 35.0% |
| TAAATCGCATGGTAGCAATT+AGG | - | chr7_3:2310603-2310622 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+AGG | - | chr7_3:2310105-2310124 | None:intergenic | 35.0% | |
| TTCAATCATATTAGCAGTGG+TGG | - | chr7_3:2310881-2310900 | None:intergenic | 35.0% | |
| GCATTCAATCATATTAGCAG+TGG | - | chr7_3:2310884-2310903 | None:intergenic | 35.0% | |
| TATGATTGAATGCTTCCCAT+CGG | + | chr7_3:2310891-2310910 | Msa1088940:intron | 35.0% | |
| !! | TAATTTGTTGGGCAGCATTT+GGG | - | chr7_3:2311083-2311102 | None:intergenic | 35.0% |
| !! | ATAATTTGTTGGGCAGCATT+TGG | - | chr7_3:2311084-2311103 | None:intergenic | 35.0% |
| ! | TGCTGCCCAACAAATTATTT+TGG | + | chr7_3:2311086-2311105 | Msa1088940:intron | 35.0% |
| !! | AGAACCCTATTCTAGAATAC+TGG | + | chr7_3:2311469-2311488 | Msa1088940:three_prime_UTR | 35.0% |
| !! | GAACTCCAGTATTCTAGAAT+AGG | - | chr7_3:2311477-2311496 | None:intergenic | 35.0% |
| TAGAATACTGGAGTTCAGTT+TGG | + | chr7_3:2311481-2311500 | Msa1088940:three_prime_UTR | 35.0% | |
| ! | TTGCGTTTTCAATACAAGAC+TGG | + | chr7_3:2311515-2311534 | Msa1088940:three_prime_UTR | 35.0% |
| GCCAATTTGAAAGGTTTGAT+GGG | + | chr7_3:2311737-2311756 | Msa1088940:three_prime_UTR | 35.0% | |
| TCCCATCAAACCTTTCAAAT+TGG | - | chr7_3:2311741-2311760 | None:intergenic | 35.0% | |
| GAGTGAGATTTGAGAAGAAG+AGG | - | chr7_3:2308394-2308413 | None:intergenic | 40.0% | |
| ACTGTAACTATTCAGTCTGC+TGG | + | chr7_3:2309254-2309273 | Msa1088940:CDS | 40.0% | |
| CAAAGATCAGTCTGTGTTGT+TGG | + | chr7_3:2309277-2309296 | Msa1088940:CDS | 40.0% | |
| GAAGAAAGAGTTTAGGAGGA+TGG | + | chr7_3:2309358-2309377 | Msa1088940:CDS | 40.0% | |
| CCACACAAAGAACAAGAATC+GGG | - | chr7_3:2309439-2309458 | None:intergenic | 40.0% | |
| CTTTGTGTGGAATTAGTGGT+TGG | + | chr7_3:2309449-2309468 | Msa1088940:intron | 40.0% | |
| GTTGGAAAATTCGGCTAAGT+TGG | + | chr7_3:2309467-2309486 | Msa1088940:intron | 40.0% | |
| CAAAGAAAGAGGGGTTCAAA+TGG | - | chr7_3:2309778-2309797 | None:intergenic | 40.0% | |
| TGAGCCTCTAACATGTAAGA+AGG | + | chr7_3:2309819-2309838 | Msa1088940:intron | 40.0% | |
| GGATCCTTCTTACATGTTAG+AGG | - | chr7_3:2309826-2309845 | None:intergenic | 40.0% | |
| ! | AAAGAGAGGCACGCTATTAA+CGG | - | chr7_3:2309956-2309975 | None:intergenic | 40.0% |
| CTGGGTAACACTAGTTGAAT+CGG | - | chr7_3:2310051-2310070 | None:intergenic | 40.0% | |
| ATTCAACTAGTGTTACCCAG+CGG | + | chr7_3:2310051-2310070 | Msa1088940:intron | 40.0% | |
| ACGTAAGAAGAATCCCTATG+TGG | + | chr7_3:2310089-2310108 | Msa1088940:intron | 40.0% | |
| CGTAAGAAGAATCCCTATGT+GGG | + | chr7_3:2310090-2310109 | Msa1088940:intron | 40.0% | |
| CACCAGAAAAAAGGGATGTT+AGG | - | chr7_3:2310271-2310290 | None:intergenic | 40.0% | |
| !!! | ATCCCTTTTTTCTGGTGATC+TGG | + | chr7_3:2310274-2310293 | Msa1088940:intron | 40.0% |
| CAACCAGATCACCAGAAAAA+AGG | - | chr7_3:2310280-2310299 | None:intergenic | 40.0% | |
| ! | TCTTGTTTATTGTGCGAACC+TGG | + | chr7_3:2310549-2310568 | Msa1088940:intron | 40.0% |
| CACCAGATAAAATAGAGACC+AGG | - | chr7_3:2310570-2310589 | None:intergenic | 40.0% | |
| TGAGCTGTTAACACGTAAGA+AGG | + | chr7_3:2310917-2310936 | Msa1088940:intron | 40.0% | |
| AACACGTAAGAAGGTTCCTT+TGG | + | chr7_3:2310926-2310945 | Msa1088940:intron | 40.0% | |
| ACACGTAAGAAGGTTCCTTT+GGG | + | chr7_3:2310927-2310946 | Msa1088940:intron | 40.0% | |
| TAGTAGTTATCTGCAACCTG+AGG | - | chr7_3:2311265-2311284 | None:intergenic | 40.0% | |
| CTACAGACCTGATCTTAAGA+AGG | + | chr7_3:2311282-2311301 | Msa1088940:CDS | 40.0% | |
| ! | CAAGGTTGAGTGCTGTTAAT+AGG | + | chr7_3:2311314-2311333 | Msa1088940:CDS | 40.0% |
| TGTGATGTTGAGTGTCAACT+AGG | - | chr7_3:2311689-2311708 | None:intergenic | 40.0% | |
| GTTGAACAGGCCAATTTGAA+AGG | + | chr7_3:2311728-2311747 | Msa1088940:three_prime_UTR | 40.0% | |
| GGCCAATTTGAAAGGTTTGA+TGG | + | chr7_3:2311736-2311755 | Msa1088940:three_prime_UTR | 40.0% | |
| ! | ATGGGAATCAGATGCTTTTC+CGG | + | chr7_3:2311755-2311774 | Msa1088940:three_prime_UTR | 40.0% |
| CTCTCCTCAACAACAATCCA+AGG | + | chr7_3:2308411-2308430 | Msa1088940:five_prime_UTR | 45.0% | |
| AAGAAGATGGCAACAGTACC+TGG | + | chr7_3:2308527-2308546 | Msa1088940:exon | 45.0% | |
| AGTACCTGGACCACTTGTTT+GGG | + | chr7_3:2308541-2308560 | Msa1088940:CDS | 45.0% | |
| TTCACGATCTCCCAAACAAG+TGG | - | chr7_3:2308554-2308573 | None:intergenic | 45.0% | |
| TTGTTTGGGAGATCGTGAAG+AGG | + | chr7_3:2308555-2308574 | Msa1088940:CDS | 45.0% | |
| !!! | CTTGTTTTGCTTCCTTGGCT+TGG | - | chr7_3:2309309-2309328 | None:intergenic | 45.0% |
| GATTTGTGAAGCAAAGCAGC+AGG | - | chr7_3:2309332-2309351 | None:intergenic | 45.0% | |
| AGAGTTTAGGAGGATGGCTA+AGG | + | chr7_3:2309364-2309383 | Msa1088940:CDS | 45.0% | |
| CCCGATTCTTGTTCTTTGTG+TGG | + | chr7_3:2309436-2309455 | Msa1088940:intron | 45.0% | |
| GTTAATAGCTCATCACCGCT+GGG | - | chr7_3:2310069-2310088 | None:intergenic | 45.0% | |
| TGTTAATAGCTCATCACCGC+TGG | - | chr7_3:2310070-2310089 | None:intergenic | 45.0% | |
| ACACCAAATCTTACTGGCAG+AGG | - | chr7_3:2310350-2310369 | None:intergenic | 45.0% | |
| TGGGGAACACCAAATCTTAC+TGG | - | chr7_3:2310356-2310375 | None:intergenic | 45.0% | |
| GGGGAAAACCTAGTCCATAT+AGG | - | chr7_3:2310652-2310671 | None:intergenic | 45.0% | |
| GTTAACAGCTCATCACCGAT+GGG | - | chr7_3:2310909-2310928 | None:intergenic | 45.0% | |
| TGTTAACAGCTCATCACCGA+TGG | - | chr7_3:2310910-2310929 | None:intergenic | 45.0% | |
| CAGACCTGATCTTAAGAAGG+CGG | + | chr7_3:2311285-2311304 | Msa1088940:CDS | 45.0% | |
| AAGAAGAGAAACAGGCATGC+AGG | + | chr7_3:2311364-2311383 | Msa1088940:CDS | 45.0% | |
| GGTCCGATTAATTGAAGGAG+AGG | - | chr7_3:2311634-2311653 | None:intergenic | 45.0% | |
| CAGTACCTGGACCACTTGTT+TGG | + | chr7_3:2308540-2308559 | Msa1088940:CDS | 50.0% | |
| ATCTCCCAAACAAGTGGTCC+AGG | - | chr7_3:2308548-2308567 | None:intergenic | 50.0% | |
| !!! | GTTTTGCTTCCTTGGCTTGG+TGG | - | chr7_3:2309306-2309325 | None:intergenic | 50.0% |
| !!! | GCAGGCTTGTTTTGCTTCCT+TGG | - | chr7_3:2309314-2309333 | None:intergenic | 50.0% |
| GGCTAAGGCTGTGCAAAATC+AGG | + | chr7_3:2309379-2309398 | Msa1088940:CDS | 50.0% | |
| GTTAGAGGCTCATCACAGCA+AGG | - | chr7_3:2309811-2309830 | None:intergenic | 50.0% | |
| TGCAGGCAAAGGAGATCAGA+AGG | - | chr7_3:2309933-2309952 | None:intergenic | 50.0% | |
| GCTATTAACGGTGCAGGCAA+AGG | - | chr7_3:2309944-2309963 | None:intergenic | 50.0% | |
| GCACCTCTGCCAGTAAGATT+TGG | + | chr7_3:2310344-2310363 | Msa1088940:intron | 50.0% | |
| TTAGAGGCTCATCACTGCTG+GGG | - | chr7_3:2310374-2310393 | None:intergenic | 50.0% | |
| GTTAGAGGCTCATCACTGCT+GGG | - | chr7_3:2310375-2310394 | None:intergenic | 50.0% | |
| TGTTAGAGGCTCATCACTGC+TGG | - | chr7_3:2310376-2310395 | None:intergenic | 50.0% | |
| TTAACGGCTCATCACTGCTG+GGG | - | chr7_3:2310671-2310690 | None:intergenic | 50.0% | |
| GTTAACGGCTCATCACTGCT+GGG | - | chr7_3:2310672-2310691 | None:intergenic | 50.0% | |
| TGTTAACGGCTCATCACTGC+TGG | - | chr7_3:2310673-2310692 | None:intergenic | 50.0% | |
| AGAGCCGCCTTCTTAAGATC+AGG | - | chr7_3:2311292-2311311 | None:intergenic | 50.0% | |
| TTAAGAAGGCGGCTCTTGCA+AGG | + | chr7_3:2311296-2311315 | Msa1088940:CDS | 50.0% | |
| AGCCTCAGAGTTGCAAAGTC+TGG | + | chr7_3:2311337-2311356 | Msa1088940:CDS | 50.0% | |
| CTGGCGCTAAGAAGAGAAAC+AGG | + | chr7_3:2311356-2311375 | Msa1088940:CDS | 50.0% | |
| TGTTGGCAACCACCAAGCCA+AGG | + | chr7_3:2309294-2309313 | Msa1088940:CDS | 55.0% | |
| AGGCACGCTATTAACGGTGC+AGG | - | chr7_3:2309950-2309969 | None:intergenic | 55.0% | |
| TTGCGTGTGTGATGTGCCTC+AGG | + | chr7_3:2311246-2311265 | Msa1088940:intron | 55.0% | |
| CGCCAGACTTTGCAACTCTG+AGG | - | chr7_3:2311342-2311361 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2308328 | 2311804 | 2308328 | ID=Msa1088940;Name=Msa1088940 |
| chr7_3 | mRNA | 2308328 | 2311804 | 2308328 | ID=Msa1088940-mRNA-1;Parent=Msa1088940;Name=Msa1088940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|0.5|0.4|5|378|145 |
| chr7_3 | exon | 2308328 | 2308432 | 2308328 | ID=Msa1088940-mRNA-1:exon:918;Parent=Msa1088940-mRNA-1 |
| chr7_3 | exon | 2308511 | 2308680 | 2308511 | ID=Msa1088940-mRNA-1:exon:919;Parent=Msa1088940-mRNA-1 |
| chr7_3 | exon | 2309237 | 2309400 | 2309237 | ID=Msa1088940-mRNA-1:exon:920;Parent=Msa1088940-mRNA-1 |
| chr7_3 | exon | 2311268 | 2311642 | 2311268 | ID=Msa1088940-mRNA-1:exon:921;Parent=Msa1088940-mRNA-1 |
| chr7_3 | exon | 2311676 | 2311804 | 2311676 | ID=Msa1088940-mRNA-1:exon:922;Parent=Msa1088940-mRNA-1 |
| chr7_3 | five_prime_UTR | 2308328 | 2308432 | 2308328 | ID=Msa1088940-mRNA-1:five_prime_utr;Parent=Msa1088940-mRNA-1 |
| chr7_3 | five_prime_UTR | 2308511 | 2308532 | 2308511 | ID=Msa1088940-mRNA-1:five_prime_utr;Parent=Msa1088940-mRNA-1 |
| chr7_3 | CDS | 2308533 | 2308680 | 2308533 | ID=Msa1088940-mRNA-1:cds;Parent=Msa1088940-mRNA-1 |
| chr7_3 | CDS | 2309237 | 2309400 | 2309237 | ID=Msa1088940-mRNA-1:cds;Parent=Msa1088940-mRNA-1 |
| chr7_3 | CDS | 2311268 | 2311393 | 2311268 | ID=Msa1088940-mRNA-1:cds;Parent=Msa1088940-mRNA-1 |
| chr7_3 | three_prime_UTR | 2311394 | 2311642 | 2311394 | ID=Msa1088940-mRNA-1:three_prime_utr;Parent=Msa1088940-mRNA-1 |
| chr7_3 | three_prime_UTR | 2311676 | 2311804 | 2311676 | ID=Msa1088940-mRNA-1:three_prime_utr;Parent=Msa1088940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
