AlfalfaGEDB | Msa0077530

M. sativa cultivar zhongmu-4 / Msa0077530

KEGG: K02875
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01929.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077530	KAG7018796.1	78.629	248	39	3	1	234	1	248	2.23e-128	373

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077530	sp\|P55844\|RL14_PEA	83.333	132	12	1	113	234	2	133	1.97e-69	212
Msa0077530	sp\|P55844\|RL14_PEA	91.589	107	9	0	1	107	1	107	6.07e-65	200

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077530	G7I4V0	91.667	132	1	1	113	234	2	133	1.13e-73	229
Msa0077530	G7I4V0	99.065	107	1	0	1	107	1	107	1.23e-66	211

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0077530	0.826752	2.283528e-54	-8.615850e-47
Msa0002790	Msa0077530	0.834505	2.883587e-56	-8.615850e-47
Msa0003780	Msa0077530	0.805168	1.520335e-49	-8.615850e-47
Msa0019390	Msa0077530	0.806311	8.750401e-50	-8.615850e-47
Msa0022970	Msa0077530	0.844297	8.248763e-59	-8.615850e-47
Msa0027260	Msa0077530	0.857749	1.319949e-62	-8.615850e-47
Msa0032260	Msa0077530	0.812260	4.637584e-51	-8.615850e-47
Msa0032580	Msa0077530	0.811745	6.003772e-51	-8.615850e-47
Msa0047160	Msa0077530	0.840911	6.538089e-58	-8.615850e-47
Msa0048180	Msa0077530	0.820056	8.389206e-53	-8.615850e-47
Msa0055180	Msa0077530	0.814789	1.288033e-51	-8.615850e-47
Msa0055190	Msa0077530	0.803433	3.494681e-49	-8.615850e-47
Msa0074030	Msa0077530	0.841127	5.736486e-58	-8.615850e-47
Msa0077530	Msa0094470	0.833176	6.198538e-56	-8.615850e-47
Msa0077530	Msa0116670	0.832758	7.874099e-56	-8.615850e-47
Msa0077530	Msa0118710	0.830782	2.419219e-55	-8.615850e-47
Msa0077530	Msa0128860	0.827789	1.288477e-54	-8.615850e-47
Msa0077530	Msa0167480	0.815195	1.046993e-51	-8.615850e-47
Msa0077530	Msa0172970	0.816531	5.270251e-52	-8.615850e-47
Msa0077530	Msa0173530	0.833351	5.605571e-56	-8.615850e-47
Msa0077530	Msa0174730	0.825049	5.793853e-54	-8.615850e-47
Msa0077530	Msa0180020	0.813878	2.048022e-51	-8.615850e-47
Msa0077530	Msa0187930	0.850883	1.273303e-60	-8.615850e-47
Msa0077530	Msa0189300	0.835728	1.417280e-56	-8.615850e-47
Msa0077530	Msa0194540	0.856054	4.169005e-62	-8.615850e-47
Msa0077530	Msa0202020	0.835028	2.130141e-56	-8.615850e-47
Msa0077530	Msa0220720	0.823422	1.396996e-53	-8.615850e-47
Msa0077530	Msa0231100	0.832312	1.015642e-55	-8.615850e-47
Msa0077530	Msa0231660	0.830184	3.388298e-55	-8.615850e-47
Msa0077530	Msa0244780	0.845180	4.769856e-59	-8.615850e-47
Msa0077530	Msa0262050	0.804285	2.324862e-49	-8.615850e-47
Msa0077530	Msa0262310	0.825827	3.789949e-54	-8.615850e-47
Msa0077530	Msa0262480	0.816920	4.311275e-52	-8.615850e-47
Msa0077530	Msa0268130	0.849691	2.748447e-60	-8.615850e-47
Msa0077530	Msa0298990	0.844898	5.684595e-59	-8.615850e-47
Msa0077530	Msa0300350	0.833934	4.008463e-56	-8.615850e-47
Msa0077530	Msa0309750	0.803204	3.897820e-49	-8.615850e-47
Msa0077530	Msa0327300	0.801183	1.015219e-48	-8.615850e-47
Msa0077530	Msa0337240	0.815346	9.689463e-52	-8.615850e-47
Msa0077530	Msa0337650	0.812820	3.496787e-51	-8.615850e-47
Msa0077530	Msa0385580	0.819910	9.060055e-53	-8.615850e-47
Msa0077530	Msa0393370	0.803134	4.029135e-49	-8.615850e-47
Msa0077530	Msa0443390	0.816065	6.700290e-52	-8.615850e-47
Msa0077530	Msa0526540	0.860673	1.753682e-63	-8.615850e-47
Msa0077530	Msa0571920	0.804701	1.903772e-49	-8.615850e-47
Msa0077530	Msa0576940	0.844705	6.406236e-59	-8.615850e-47
Msa0077530	Msa0588360	0.806236	9.071574e-50	-8.615850e-47
Msa0077530	Msa0615440	0.839740	1.322144e-57	-8.615850e-47
Msa0077530	Msa0615580	0.824782	6.698473e-54	-8.615850e-47
Msa0077530	Msa0648780	0.825283	5.101969e-54	-8.615850e-47
Msa0077530	Msa0666230	0.806163	9.398648e-50	-8.615850e-47
Msa0077530	Msa0698490	0.840845	6.803081e-58	-8.615850e-47
Msa0077530	Msa0698660	0.841885	3.621525e-58	-8.615850e-47
Msa0077530	Msa0719420	0.840861	6.736876e-58	-8.615850e-47
Msa0077530	Msa0729200	0.805006	1.644114e-49	-8.615850e-47
Msa0077530	Msa0764680	-0.800522	1.385401e-48	-8.615850e-47
Msa0077530	Msa0769590	0.816347	5.794725e-52	-8.615850e-47
Msa0077530	Msa0772480	0.802919	4.463052e-49	-8.615850e-47
Msa0077530	Msa0785130	0.805076	1.589203e-49	-8.615850e-47
Msa0077530	Msa0789680	0.843044	1.784913e-58	-8.615850e-47
Msa0077530	Msa0798440	0.802251	6.128863e-49	-8.615850e-47
Msa0077530	Msa0802410	0.848517	5.826797e-60	-8.615850e-47
Msa0077530	Msa0806880	0.840912	6.534248e-58	-8.615850e-47
Msa0077530	Msa0842830	0.805027	1.627100e-49	-8.615850e-47
Msa0077530	Msa0902760	0.813115	3.013838e-51	-8.615850e-47
Msa0077530	Msa0974810	0.800398	1.468798e-48	-8.615850e-47
Msa0077530	Msa1006840	0.838548	2.694237e-57	-8.615850e-47
Msa0077530	Msa1013400	0.811110	8.248215e-51	-8.615850e-47
Msa0077530	Msa1019240	0.830577	2.716164e-55	-8.615850e-47
Msa0077530	Msa1019260	0.833700	4.587269e-56	-8.615850e-47
Msa0077530	Msa1039520	0.800363	1.492464e-48	-8.615850e-47
Msa0077530	Msa1072710	0.803426	3.505198e-49	-8.615850e-47
Msa0077530	Msa1081150	0.835929	1.260245e-56	-8.615850e-47
Msa0077530	Msa1084470	0.805067	1.596256e-49	-8.615850e-47
Msa0077530	Msa1088940	0.801011	1.101137e-48	-8.615850e-47
Msa0077530	Msa1093530	0.811340	7.351323e-51	-8.615850e-47
Msa0077530	Msa1104140	0.846026	2.811714e-59	-8.615850e-47
Msa0077530	Msa1104210	0.839468	1.556025e-57	-8.615850e-47
Msa0077530	Msa1126510	0.800467	1.421476e-48	-8.615850e-47
Msa0077530	Msa1135890	0.817255	3.625071e-52	-8.615850e-47
Msa0077530	Msa1138870	0.804858	1.765384e-49	-8.615850e-47
Msa0077530	Msa1166860	0.802655	5.060744e-49	-8.615850e-47
Msa0077530	Msa1166870	0.824067	9.863281e-54	-8.615850e-47
Msa0077530	Msa1181850	0.820457	6.791042e-53	-8.615850e-47
Msa0077530	Msa1181860	0.806492	8.012930e-50	-8.615850e-47
Msa0077530	Msa1215820	0.822069	2.885686e-53	-8.615850e-47
Msa0077530	Msa1218600	0.810491	1.122801e-50	-8.615850e-47
Msa0077530	Msa1257510	0.803897	2.799111e-49	-8.615850e-47
Msa0077530	Msa1265630	0.837198	5.988952e-57	-8.615850e-47
Msa0077530	Msa1281190	0.806996	6.271421e-50	-8.615850e-47
Msa0077530	Msa1331710	0.813912	2.013230e-51	-8.615850e-47
Msa0077530	Msa1349570	0.801206	1.004434e-48	-8.615850e-47
Msa0077530	Msa1360140	0.804505	2.092195e-49	-8.615850e-47
Msa0077530	Msa1363330	0.862461	4.985862e-64	-8.615850e-47
Msa0077530	Msa1369190	0.801593	8.369949e-49	-8.615850e-47
Msa0077530	Msa1374120	0.801933	7.127291e-49	-8.615850e-47
Msa0077530	Msa1379760	0.827534	1.483855e-54	-8.615850e-47
Msa0077530	Msa1386600	0.863908	1.778719e-64	-8.615850e-47
Msa0077530	Msa1387410	0.802347	5.857202e-49	-8.615850e-47
Msa0077530	Msa1394290	0.843721	1.176964e-58	-8.615850e-47
Msa0077530	Msa1413500	0.844756	6.209079e-59	-8.615850e-47
Msa0077530	Msa1427560	0.800586	1.344256e-48	-8.615850e-47
Msa0077530	Msa1432700	0.803179	3.944534e-49	-8.615850e-47
Msa0077530	Msa1448690	0.840399	8.903523e-58	-8.615850e-47
Msa0077530	Msa1450280	0.820070	8.330660e-53	-8.615850e-47
Msa0077530	Msa1457920	0.827214	1.770303e-54	-8.615850e-47
Msa0077530	Msa1465260	0.818551	1.847583e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077530	MtrunA17_Chr1g0187471	91.667	132	1	1	113	234	2	133	2.18e-77	229
Msa0077530	MtrunA17_Chr1g0187471	99.065	107	1	0	1	107	1	107	2.38e-70	211
Msa0077530	MtrunA17_Chr4g0067861	87.879	132	6	1	113	234	2	133	4.52e-76	226
Msa0077530	MtrunA17_Chr4g0067861	94.393	107	6	0	1	107	1	107	5.23e-69	208

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077530	AT2G20450.1	77.863	131	19	1	114	234	3	133	5.61e-64	196
Msa0077530	AT2G20450.1	85.981	107	15	0	1	107	1	107	1.23e-59	184
Msa0077530	AT4G27090.1	78.906	128	17	1	114	231	3	130	1.62e-63	194
Msa0077530	AT4G27090.1	84.112	107	17	0	1	107	1	107	5.98e-59	182

Find 100 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAACCTATCAAAATCATTA+AGG	0.237759	1_2:+54515419	None:intergenic
TGAACCTATCAAAATCATTA+AGG	0.237759	1_2:+54521088	None:intergenic
TATGCAATCAAAAGCATAAA+TGG	0.243731	1_2:+54514526	None:intergenic
TTGACGAGATCCTTCTTCTT+AGG	0.250131	1_2:+54515659	None:intergenic
TTGACGAGATCCTTCTTCTT+AGG	0.250131	1_2:+54521331	None:intergenic
GTCAACTATGGCCCAGATTA+TGG	0.258615	1_2:-54515906	Msa0077530:CDS
GTCAACTATGGCCCAGATTA+TGG	0.258615	1_2:-54521579	Msa0077530:CDS
CATGGGCAATAACATTTCTT+TGG	0.268425	1_2:+54514031	None:intergenic
CTGAATTGTCCTAGACTTAG+AGG	0.278421	1_2:+54514214	None:intergenic
ACAACGAGCTTGCCATAATC+TGG	0.305463	1_2:+54515894	None:intergenic
ACAACGAGCTTGCCATAATC+TGG	0.305463	1_2:+54521567	None:intergenic
GACATTCATACAATGTTTAC+AGG	0.311357	1_2:+54514127	None:intergenic
GCTAGTGTTATATTCATAAA+TGG	0.324121	1_2:-54514054	Msa0077530:three_prime_UTR
GAAAATGGGTTACCCTAGTT+TGG	0.329740	1_2:+54515853	None:intergenic
GAAAATGGGTTACCCTAGTT+TGG	0.329740	1_2:+54521526	None:intergenic
GAAAGCCTCTTGAAATTGAT+TGG	0.344891	1_2:+54521388	None:intergenic
GAAAGCCTCTTGAAATTGAT+TGG	0.348542	1_2:+54515716	None:intergenic
TATCAATCTTGATATCAGTT+AGG	0.362900	1_2:+54521365	None:intergenic
AATGTCCCTTGTGGACATTC+TGG	0.368012	1_2:-54514110	Msa0077530:three_prime_UTR
ACGAATATCAACAATGTTCA+TGG	0.386857	1_2:+54514013	None:intergenic
AAAGCCTCTTGAAATTGATT+GGG	0.387025	1_2:+54521389	None:intergenic
GTGCCTCAGAAAATCGAAAA+TGG	0.394255	1_2:-54521722	Msa0077530:intron
GACTGTTAACATGTAACTTA+CGG	0.428959	1_2:+54514178	None:intergenic
TGCAGAGGGCTGGTGTTGTT+AGG	0.431787	1_2:-54514667	Msa0077530:intron
TTGATGTTATCGACCAAACT+AGG	0.433748	1_2:-54515866	Msa0077530:CDS
TTGATGTTATCGACCAAACT+AGG	0.433748	1_2:-54521539	Msa0077530:CDS
AAATAAATCTCATAAATAGA+AGG	0.437678	1_2:+54514563	None:intergenic
GAACCTATCAAAATCATTAA+GGG	0.440003	1_2:+54515420	None:intergenic
GAACCTATCAAAATCATTAA+GGG	0.440003	1_2:+54521089	None:intergenic
ACTGTTAACATGTAACTTAC+GGG	0.446737	1_2:+54514179	None:intergenic
GAGTATTGCAACATTTGTAA+TGG	0.447120	1_2:+54514303	None:intergenic
AACAATCAATTTCCTTCCCC+AGG	0.448020	1_2:+54515459	None:intergenic
AACAATCAATTTCCTTCCCC+AGG	0.448020	1_2:+54521128	None:intergenic
ACCCACTCTCTCTGCCTTGA+GGG	0.452090	1_2:+54514260	None:intergenic
ATTGGGGCTCTCTCCATGTC+AGG	0.459706	1_2:+54521406	None:intergenic
ATCAATCTTGATATCAGTTA+GGG	0.462600	1_2:+54521366	None:intergenic
ATTGGAGCTCTCTCCATGTC+AGG	0.463357	1_2:+54515734	None:intergenic
AGAGTTGCACTTGTCAACTA+TGG	0.476767	1_2:-54515918	Msa0077530:CDS
AGAGTTGCACTTGTCAACTA+TGG	0.476767	1_2:-54521591	Msa0077530:CDS
GCTGAGGAAGACCGCAGCTT+AGG	0.479614	1_2:-54514630	Msa0077530:exon
TCTTTGCTCCCTCTAAGTCT+AGG	0.480015	1_2:-54514223	Msa0077530:three_prime_UTR
GAAGGATCTCGTCAAGGCTA+TGG	0.488672	1_2:-54515651	Msa0077530:CDS
GAAGGATCTCGTCAAGGCTA+TGG	0.488672	1_2:-54521323	Msa0077530:CDS
GGAAATTGATTGTTAAGAAG+AGG	0.493248	1_2:-54515450	Msa0077530:CDS
GGAAATTGATTGTTAAGAAG+AGG	0.493248	1_2:-54521119	Msa0077530:CDS
AATCTGTTAGAAGTTTCAAA+TGG	0.493350	1_2:-54514395	Msa0077530:three_prime_UTR
TTCAAGAGGTTTGTTGAGAT+CGG	0.494020	1_2:-54515942	Msa0077530:CDS
TTCAAGAGGTTTGTTGAGAT+CGG	0.494020	1_2:-54521615	Msa0077530:CDS
GCCTTGAGGGTAACAAGTGT+TGG	0.498316	1_2:+54514273	None:intergenic
CAAGAGAGTTCCTAAGAAGA+AGG	0.504705	1_2:-54515669	Msa0077530:CDS
CAAGAGAGTTCCTAAGAAGA+AGG	0.504705	1_2:-54521341	Msa0077530:CDS
TATGATACCAAGTCATGAAT+CGG	0.522601	1_2:+54514326	None:intergenic
TACAACTCCGATTCATGACT+TGG	0.533448	1_2:-54514333	Msa0077530:three_prime_UTR
ACAAGTGGGAGAAGAGCTCC+TGG	0.539704	1_2:-54515477	Msa0077530:CDS
ACAAGTGGGAGAAGAGCTCC+TGG	0.539704	1_2:-54521146	Msa0077530:CDS
AATTGATTGTTAAGAAGAGG+AGG	0.539799	1_2:-54515447	Msa0077530:CDS
AATTGATTGTTAAGAAGAGG+AGG	0.539799	1_2:-54521116	Msa0077530:CDS
ACACTAGCTTATGCATATCA+TGG	0.544925	1_2:+54514069	None:intergenic
CAACGAGCTTGCCATAATCT+GGG	0.548769	1_2:+54515895	None:intergenic
CAACGAGCTTGCCATAATCT+GGG	0.548769	1_2:+54521568	None:intergenic
CGAATATCAACAATGTTCAT+GGG	0.556230	1_2:+54514014	None:intergenic
TGATAGATGTGAAGAACAAG+TGG	0.562094	1_2:-54515492	Msa0077530:intron
TGATAGATGTGAAGAACAAG+TGG	0.562094	1_2:-54521161	Msa0077530:intron
TACCCTCAAGGCAGAGAGAG+TGG	0.562638	1_2:-54514262	Msa0077530:three_prime_UTR
GGCACTCGCAGCTGAAACAA+AGG	0.562800	1_2:+54521740	None:intergenic
ATCTCAACAAACCTCTTGAA+CGG	0.571035	1_2:+54515945	None:intergenic
ATCTCAACAAACCTCTTGAA+CGG	0.571035	1_2:+54521618	None:intergenic
TAGCTTATGCATATCATGGT+TGG	0.577923	1_2:+54514073	None:intergenic
AAGCCTCTTGAAATTGATTG+GGG	0.580879	1_2:+54521390	None:intergenic
GAGCCCCAATCAATTTCAAG+AGG	0.583215	1_2:-54521393	Msa0077530:CDS
AACCCACTCTCTCTGCCTTG+AGG	0.583630	1_2:+54514259	None:intergenic
GAGCTCCAATCAATTTCAAG+AGG	0.584468	1_2:-54515721	Msa0077530:CDS
ATCAAGCAAGAAAGAGCTAG+AGG	0.585153	1_2:-54514472	Msa0077530:three_prime_UTR
GGGAGAAGAGCTCCTGGGGA+AGG	0.586483	1_2:-54515471	Msa0077530:CDS
GGGAGAAGAGCTCCTGGGGA+AGG	0.586483	1_2:-54521140	Msa0077530:CDS
GTCAAGGCTATGGAAGCTGC+AGG	0.587422	1_2:-54515641	Msa0077530:intron
GTCAAGGCTATGGAAGCTGC+AGG	0.587422	1_2:-54521313	Msa0077530:intron
TCTTTGTTCAGCCGTTCAAG+AGG	0.591089	1_2:-54515956	Msa0077530:intron
TCTTTGTTCAGCCGTTCAAG+AGG	0.591089	1_2:-54521629	Msa0077530:intron
TCTTGTTGATGCACCTGACA+TGG	0.596389	1_2:-54515747	Msa0077530:CDS
TCTTGTTGATGCACCTGACA+TGG	0.596389	1_2:-54521419	Msa0077530:CDS
ATTGATTGTTAAGAAGAGGA+GGG	0.602431	1_2:-54515446	Msa0077530:CDS
ATTGATTGTTAAGAAGAGGA+GGG	0.602431	1_2:-54521115	Msa0077530:CDS
ACCCTCAAGGCAGAGAGAGT+GGG	0.605053	1_2:-54514261	Msa0077530:three_prime_UTR
TCCAACACTTGTTACCCTCA+AGG	0.605743	1_2:-54514274	Msa0077530:three_prime_UTR
TGATGTTATCGACCAAACTA+GGG	0.607546	1_2:-54515865	Msa0077530:intron
TGATGTTATCGACCAAACTA+GGG	0.607546	1_2:-54521538	Msa0077530:intron
GGCAAGAACTTGCTAAGCTG+AGG	0.613930	1_2:-54514646	Msa0077530:CDS
AAGTGGGAGAAGAGCTCCTG+GGG	0.619297	1_2:-54515475	Msa0077530:CDS
AAGTGGGAGAAGAGCTCCTG+GGG	0.619297	1_2:-54521144	Msa0077530:CDS
GATAGATGTGAAGAACAAGT+GGG	0.623335	1_2:-54515491	Msa0077530:intron
GATAGATGTGAAGAACAAGT+GGG	0.623335	1_2:-54521160	Msa0077530:intron
TGAATTGTCCTAGACTTAGA+GGG	0.624453	1_2:+54514215	None:intergenic
TAAGAAGAAGGATCTCGTCA+AGG	0.637349	1_2:-54515657	Msa0077530:CDS
TAAGAAGAAGGATCTCGTCA+AGG	0.637349	1_2:-54521329	Msa0077530:CDS
CAAGTGGGAGAAGAGCTCCT+GGG	0.641380	1_2:-54515476	Msa0077530:CDS
CAAGTGGGAGAAGAGCTCCT+GGG	0.641380	1_2:-54521145	Msa0077530:CDS
ATGAAGTAATGCCTAAGCTG+CGG	0.676586	1_2:+54514619	None:intergenic
CATTGTATGAATGTCCCTTG+TGG	0.683978	1_2:-54514119	Msa0077530:three_prime_UTR
TTTCACCAGAATGTCCACAA+GGG	0.722276	1_2:+54514105	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATAAAAATTAAAAAAATA+AGG	-	chr1_2:54516915-54516934	Msa0077530:intron	0.0%
!!	TTAATTATGATTTAAACTTT+GGG	-	chr1_2:54516174-54516193	Msa0077530:intron	10.0%
!!!	CAAATTTTTTTTATAGTTTT+TGG	-	chr1_2:54516465-54516484	Msa0077530:intron	10.0%
!!!	AATTTTTTAATATTTTTGCA+GGG	+	chr1_2:54516560-54516579	None:intergenic	10.0%
!!!	CGAAATTTTAATAAAAATTA+TGG	-	chr1_2:54517140-54517159	Msa0077530:intron	10.0%
!!	TATTTATAAATCAAGAATAA+GGG	-	chr1_2:54517383-54517402	Msa0077530:intron	10.0%
!!	TTAATGAAAAATAAAAATTC+TGG	+	chr1_2:54517533-54517552	None:intergenic	10.0%
!!	ACTAAAAAAATTAAAAATTC+TGG	+	chr1_2:54517649-54517668	None:intergenic	10.0%
!!	ATAAAAAAATTGAAAAATTC+TGG	+	chr1_2:54517765-54517784	None:intergenic	10.0%
!!!	CAAATTTTTTTTATAGTTTT+TGG	+	chr1_2:54516465-54516484	None:intergenic	10.0%
!!!	AAGGTTTTTTTTTTTTTTTT+AGG	-	chr1_2:54519157-54519176	Msa0077530:intron	10.0%
!!!	AGGTTTTTTTTTTTTTTTTA+GGG	-	chr1_2:54519158-54519177	Msa0077530:intron	10.0%
!!	ACAAAAATAAATATATAGAT+AGG	+	chr1_2:54520179-54520198	None:intergenic	10.0%
!!!	ATTTTATGATAAAAGATTAA+GGG	+	chr1_2:54520869-54520888	None:intergenic	10.0%
!!!	AATTTTATGATAAAAGATTA+AGG	+	chr1_2:54520870-54520889	None:intergenic	10.0%
!!!	TAATCTTTTATCATAAAATT+TGG	-	chr1_2:54520870-54520889	Msa0077530:intron	10.0%
!!	TTTGGTTAAATAACTTAATT+AGG	-	chr1_2:54514797-54514816	Msa0077530:intron	15.0%
!!	TATGTTCAAAAATTGTTAAA+TGG	+	chr1_2:54515243-54515262	None:intergenic	15.0%
!!	GTTAATTATGATTTAAACTT+TGG	-	chr1_2:54516173-54516192	Msa0077530:intron	15.0%
!!	TAATTATGATTTAAACTTTG+GGG	-	chr1_2:54516175-54516194	Msa0077530:intron	15.0%
!!!	AAATTTTATAGGCTTAAATA+TGG	-	chr1_2:54516399-54516418	Msa0077530:intron	15.0%
!!	AACTATAAAAAAAATTTGCA+GGG	+	chr1_2:54518071-54518090	None:intergenic	15.0%
!!	AAACTATAAAAAAAATTTGC+AGG	+	chr1_2:54518070-54518089	None:intergenic	15.0%
!!!	ATTTTTTAATATTTTTGCAG+GGG	+	chr1_2:54516559-54516578	None:intergenic	15.0%
!!!	GAATTTTTTAATATTTTTGC+AGG	+	chr1_2:54516561-54516580	None:intergenic	15.0%
!!	GCAAAAATATTAAAAAATTC+TGG	-	chr1_2:54516561-54516580	Msa0077530:intron	15.0%
!!	ATTAAAAAATTCTGCAAAAA+TGG	-	chr1_2:54516759-54516778	Msa0077530:intron	15.0%
!!	GGAAAAAAATTTAAAAATTC+TGG	-	chr1_2:54516936-54516955	Msa0077530:intron	15.0%
!!	TCTGAAAAAAATTAAAATTC+TGG	-	chr1_2:54517082-54517101	Msa0077530:intron	15.0%
!!	TTTATTTCCAAAAAAATTTC+CGG	-	chr1_2:54517208-54517227	Msa0077530:intron	15.0%
!!!	ATTTTTGTGTATTTATAAAC+CGG	-	chr1_2:54517349-54517368	Msa0077530:intron	15.0%
!!	GTATTTATAAATCAAGAATA+AGG	-	chr1_2:54517382-54517401	Msa0077530:intron	15.0%
!!	ACTATAAAAAAAAAATTTGC+AGG	-	chr1_2:54517949-54517968	Msa0077530:intron	15.0%
!!	CTATAAAAAAAAAATTTGCA+GGG	-	chr1_2:54517950-54517969	Msa0077530:intron	15.0%
!!!	AAACTATAAAAAAATTTTGC+AGG	-	chr1_2:54518010-54518029	Msa0077530:intron	15.0%
!!!	AACTATAAAAAAATTTTGCA+GGG	-	chr1_2:54518011-54518030	Msa0077530:intron	15.0%
!!	AAACTATAAAAAAAATTTGC+AGG	-	chr1_2:54518070-54518089	Msa0077530:intron	15.0%
!!	AACTATAAAAAAAATTTGCA+GGG	-	chr1_2:54518071-54518090	Msa0077530:intron	15.0%
!!!	TTATAAAATTGGCTTAAATA+TGG	+	chr1_2:54518135-54518154	None:intergenic	15.0%
!!	ATCCTTTCAAATTATAAAAT+TGG	+	chr1_2:54518146-54518165	None:intergenic	15.0%
!!!	TTTTTATGTTAAATGATTAC+TGG	+	chr1_2:54518265-54518284	None:intergenic	15.0%
!!!	AATTTTGCAATAATTTTTTG+CGG	+	chr1_2:54518588-54518607	None:intergenic	15.0%
!!	TTCAAAAATTTAAGAGTTTA+AGG	-	chr1_2:54518754-54518773	Msa0077530:intron	15.0%
!!	AATGCTATTAAAATTAAGTA+AGG	-	chr1_2:54518845-54518864	Msa0077530:intron	15.0%
!!	ACTTATTATCATTATTTGTT+GGG	+	chr1_2:54518919-54518938	None:intergenic	15.0%
!!	AACTTATTATCATTATTTGT+TGG	+	chr1_2:54518920-54518939	None:intergenic	15.0%
!!!	ATAATAGCTTTTCTTTATTT+TGG	-	chr1_2:54519607-54519626	Msa0077530:intron	15.0%
!!!	TAATAGCTTTTCTTTATTTT+GGG	-	chr1_2:54519608-54519627	Msa0077530:intron	15.0%
!!	AAATAAATCTCATAAATAGA+AGG	+	chr1_2:54521219-54521238	None:intergenic	15.0%
!!	ATTAGAGAAAGATTAAGAAA+TGG	+	chr1_2:54514118-54514137	None:intergenic	20.0%
!!	AAGATTGGAAATTTGAAAAT+GGG	+	chr1_2:54514270-54514289	None:intergenic	20.0%
!!	AAAGATTGGAAATTTGAAAA+TGG	+	chr1_2:54514271-54514290	None:intergenic	20.0%
!!!	TTTTCAGAAATTAAGCAAAT+GGG	+	chr1_2:54514311-54514330	None:intergenic	20.0%
!!!	TTTTTCAGAAATTAAGCAAA+TGG	+	chr1_2:54514312-54514331	None:intergenic	20.0%
!!!	TAGCTTTTGTTTATTGAAAT+TGG	-	chr1_2:54514560-54514579	Msa0077530:three_prime_UTR	20.0%
!!!	GAAATTGGATTTTAATTTTG+TGG	-	chr1_2:54514575-54514594	Msa0077530:three_prime_UTR	20.0%
!!!	GATTTTAATTTTGTGGTAAT+TGG	-	chr1_2:54514582-54514601	Msa0077530:three_prime_UTR	20.0%
!!	CTAAAATTATACCTTAATCT+TGG	+	chr1_2:54514729-54514748	None:intergenic	20.0%
!!	TTAAGTTATTTAACCAAACA+AGG	+	chr1_2:54514795-54514814	None:intergenic	20.0%
!!	TTAAGTTATTTATCCAAACA+GGG	+	chr1_2:54514877-54514896	None:intergenic	20.0%
!!	TTTGGATAAATAACTTAACT+TGG	-	chr1_2:54514879-54514898	Msa0077530:intron	20.0%
!!!	ATTGTTTTTGTATAAGCTTT+AGG	-	chr1_2:54514981-54515000	Msa0077530:intron	20.0%
!!!	TTGTTTTTGTATAAGCTTTA+GGG	-	chr1_2:54514982-54515001	Msa0077530:intron	20.0%
!!!	TTTTCATAAGTTAATCCAAA+CGG	+	chr1_2:54515009-54515028	None:intergenic	20.0%
!!!	AATCTGTTTCTTAAGTTATT+TGG	-	chr1_2:54515200-54515219	Msa0077530:intron	20.0%
!!!	TGTTTTTTCAAATTGTGTTT+TGG	-	chr1_2:54515349-54515368	Msa0077530:intron	20.0%
!!!	GTTTGCATATTTTTTAATGT+TGG	-	chr1_2:54515714-54515733	Msa0077530:CDS	20.0%
!!	TGAACATATCATTAAGTAAA+TGG	-	chr1_2:54516051-54516070	Msa0077530:intron	20.0%
!!	ATCATAATTAACTCATAACA+CGG	+	chr1_2:54516165-54516184	None:intergenic	20.0%
!!	AATTATGATTTAAACTTTGG+GGG	-	chr1_2:54516176-54516195	Msa0077530:intron	20.0%
!!!	TTAAATGACATTTTACAATC+AGG	-	chr1_2:54516300-54516319	Msa0077530:intron	20.0%
!!!	AGGACTTTATGAAATTTTAT+AGG	-	chr1_2:54516388-54516407	Msa0077530:intron	20.0%
!!	TTATTTCCAAAAAAATTTCC+GGG	-	chr1_2:54517209-54517228	Msa0077530:intron	20.0%
!!	TTATAAATACACAAAATTCC+CGG	+	chr1_2:54517230-54517249	None:intergenic	20.0%
!!!	ACATATTTTTTCCTTATTCT+CGG	+	chr1_2:54517254-54517273	None:intergenic	20.0%
!!!	TTTTCATTAGTATTTTTTCC+AGG	-	chr1_2:54517325-54517344	Msa0077530:intron	20.0%
!!	TATAAATACACAAAAATTCC+TGG	+	chr1_2:54517346-54517365	None:intergenic	20.0%
!!!	TTTTTGTGTATTTATAAACC+GGG	-	chr1_2:54517350-54517369	Msa0077530:intron	20.0%
!!!	ATTTTTCGAGAATTTTTGTA+GGG	-	chr1_2:54517919-54517938	Msa0077530:intron	20.0%
!!!	AGCCAATTTTATAATTTGAA+AGG	-	chr1_2:54518141-54518160	Msa0077530:intron	20.0%
!!	TATAATTTGAAAGGATTGTA+TGG	-	chr1_2:54518150-54518169	Msa0077530:intron	20.0%
!!	AAAAAAATCAAAATGACTAC+AGG	-	chr1_2:54518185-54518204	Msa0077530:intron	20.0%
!!	AGTGCAGAAAAATAAAATTA+GGG	+	chr1_2:54518460-54518479	None:intergenic	20.0%
!!	AAACAAATTTGAATTGAGTA+GGG	+	chr1_2:54518493-54518512	None:intergenic	20.0%
!!	TAAACAAATTTGAATTGAGT+AGG	+	chr1_2:54518494-54518513	None:intergenic	20.0%
!!!	TTTGTGATGTTTTATAAAGA+GGG	+	chr1_2:54519665-54519684	None:intergenic	20.0%
!!!	TTTTGTGATGTTTTATAAAG+AGG	+	chr1_2:54519666-54519685	None:intergenic	20.0%
!!	ATTAGAGAAAGATTAAGAAA+TGG	+	chr1_2:54514118-54514137	None:intergenic	20.0%
!!	AAGATTGGAAATTTGAAAAT+GGG	+	chr1_2:54514270-54514289	None:intergenic	20.0%
!!	AAAGATTGGAAATTTGAAAA+TGG	+	chr1_2:54514271-54514290	None:intergenic	20.0%
!!!	TTTTCAGAAATTAAGCAAAT+GGG	+	chr1_2:54514311-54514330	None:intergenic	20.0%
!!!	TTTTTCAGAAATTAAGCAAA+TGG	+	chr1_2:54514312-54514331	None:intergenic	20.0%
!!!	TAGCTTTTTTTTGTTGAAAT+TGG	-	chr1_2:54520231-54520250	Msa0077530:intron	20.0%
!!!	TTGAAATTGGATTTTAATTG+TGG	-	chr1_2:54520244-54520263	Msa0077530:intron	20.0%
!!	CTAAAATTATACCTTAATCT+TGG	+	chr1_2:54514729-54514748	None:intergenic	20.0%
!!!	TTGTGAAATGATTTTAAGTT+AGG	-	chr1_2:54520438-54520457	Msa0077530:intron	20.0%
!!!	TGTGAAATGATTTTAAGTTA+GGG	-	chr1_2:54520439-54520458	Msa0077530:intron	20.0%
!!	TTAAGTTATTTATCCAAACA+AGG	+	chr1_2:54514877-54514896	None:intergenic	20.0%
!!!	ATTGTATTTCTATAAGCTTT+AGG	-	chr1_2:54520652-54520671	Msa0077530:intron	20.0%
!!!	TTGTATTTCTATAAGCTTTA+GGG	-	chr1_2:54520653-54520672	Msa0077530:intron	20.0%
!!!	GATTGCATATTTTTTAATGT+CGG	-	chr1_2:54521267-54521286	Msa0077530:intron	20.0%
!!!	GTTTGCATATTTTTTAATGT+TGG	-	chr1_2:54515714-54515733	Msa0077530:CDS	20.0%
!	ATCAATCTTGATATCAGTTA+GGG	+	chr1_2:54514416-54514435	None:intergenic	25.0%
!	TATCAATCTTGATATCAGTT+AGG	+	chr1_2:54514417-54514436	None:intergenic	25.0%
!	GAACCTATCAAAATCATTAA+GGG	+	chr1_2:54514693-54514712	None:intergenic	25.0%
!	TGAACCTATCAAAATCATTA+AGG	+	chr1_2:54514694-54514713	None:intergenic	25.0%
!!!	TTGTGAAATGCTTTTTAGTT+AGG	-	chr1_2:54514769-54514788	Msa0077530:intron	25.0%
!	GTTAAGTTATTTATCCAAAC+AGG	+	chr1_2:54514878-54514897	None:intergenic	25.0%
!	ATAATTTCAATTTGTGCAGA+GGG	-	chr1_2:54515406-54515425	Msa0077530:intron	25.0%
!	TATGCAATCAAAAGCAAAAA+TGG	+	chr1_2:54515637-54515656	None:intergenic	25.0%
!!!	CTAGAGGTTTTATTGTTATT+AGG	-	chr1_2:54515692-54515711	Msa0077530:CDS	25.0%
!	CAAAAATCAACAATGTTCAT+GGG	+	chr1_2:54516094-54516113	None:intergenic	25.0%
!	ACAAAAATCAACAATGTTCA+TGG	+	chr1_2:54516095-54516114	None:intergenic	25.0%
!	ATTATGATTTAAACTTTGGG+GGG	-	chr1_2:54516177-54516196	Msa0077530:intron	25.0%
!!	ACAAAATCATGAAGATTTTG+AGG	-	chr1_2:54516238-54516257	Msa0077530:intron	25.0%
!!	CAAAATCATGAAGATTTTGA+GGG	-	chr1_2:54516239-54516258	Msa0077530:intron	25.0%
!!!	GGGATTATATTGATTTTTGT+TGG	-	chr1_2:54516259-54516278	Msa0077530:intron	25.0%
!!	TTTTGAACACATGACTTTAA+CGG	-	chr1_2:54516324-54516343	Msa0077530:intron	25.0%
!!!	TGACTTTAACGGATTTATAA+CGG	-	chr1_2:54516335-54516354	Msa0077530:intron	25.0%
!!!	CAGATTTTTTGAGATTTCAA+AGG	-	chr1_2:54516368-54516387	Msa0077530:intron	25.0%
!	TATAGGCTTAAATATGGTAT+TGG	-	chr1_2:54516405-54516424	Msa0077530:intron	25.0%
!!	CCAAAAACAAAAATTTTGCA+GGG	+	chr1_2:54516523-54516542	None:intergenic	25.0%
!!	TCCAAAAACAAAAATTTTGC+AGG	+	chr1_2:54516524-54516543	None:intergenic	25.0%
!!!	AAAATTCCCGGAAATTTTTT+TGG	+	chr1_2:54517218-54517237	None:intergenic	25.0%
!	GTATTTATAAACCGAGAATA+AGG	-	chr1_2:54517240-54517259	Msa0077530:intron	25.0%
!	TATAAATACACAAAAGTTCC+CGG	+	chr1_2:54517371-54517390	None:intergenic	25.0%
!	AAATCAAGAATAAGGGAATT+TGG	-	chr1_2:54517390-54517409	Msa0077530:intron	25.0%
!!!	CATTTTTCGAGAATTTTTGT+AGG	-	chr1_2:54517918-54517937	Msa0077530:intron	25.0%
!!	AATTGGCTTAAATATGGTAT+TGG	+	chr1_2:54518129-54518148	None:intergenic	25.0%
!	AATCTGCTAACAAACAAATA+AGG	-	chr1_2:54518356-54518375	Msa0077530:intron	25.0%
!	ATCTGCTAACAAACAAATAA+GGG	-	chr1_2:54518357-54518376	Msa0077530:intron	25.0%
!	CAGTGCAGAAAAATAAAATT+AGG	+	chr1_2:54518461-54518480	None:intergenic	25.0%
!!!	TAATCAAACTTTGTTTTAGC+AGG	-	chr1_2:54518782-54518801	Msa0077530:intron	25.0%
!!!	AATCAAACTTTGTTTTAGCA+GGG	-	chr1_2:54518783-54518802	Msa0077530:intron	25.0%
!!	TTTGAATGTGTATGTCTTTT+AGG	+	chr1_2:54519356-54519375	None:intergenic	25.0%
!	TTGTTGTATAAGTAAAGATG+AGG	-	chr1_2:54519557-54519576	Msa0077530:intron	25.0%
!!	TTGTGATGTTTTATAAAGAG+GGG	+	chr1_2:54519664-54519683	None:intergenic	25.0%
!!!	AGAAAGTGTTGTCAAAATTA+GGG	+	chr1_2:54519690-54519709	None:intergenic	25.0%
!!!	TAGAAAGTGTTGTCAAAATT+AGG	+	chr1_2:54519691-54519710	None:intergenic	25.0%
!	TTTCAGAAATTAAGCAAATG+GGG	+	chr1_2:54514310-54514329	None:intergenic	25.0%
!!!	TGGATTTTAATTGTGGTAAT+TGG	-	chr1_2:54520251-54520270	Msa0077530:intron	25.0%
!	GAACCTATCAAAATCATTAA+GGG	+	chr1_2:54514693-54514712	None:intergenic	25.0%
!	TGAACCTATCAAAATCATTA+AGG	+	chr1_2:54514694-54514713	None:intergenic	25.0%
!!	TTTGCATTTTATAGTGTAAG+TGG	-	chr1_2:54520569-54520588	Msa0077530:intron	25.0%
!!	TTGCATTTTATAGTGTAAGT+GGG	-	chr1_2:54520570-54520589	Msa0077530:intron	25.0%
!	GGTTATTATATAAGCTGTTA+TGG	-	chr1_2:54520592-54520611	Msa0077530:intron	25.0%
!	CAAGTTTGTCTATGAAAAAA+CGG	+	chr1_2:54520776-54520795	None:intergenic	25.0%
!	TAAAATAAGCTAATCCAAAC+AGG	-	chr1_2:54520986-54521005	Msa0077530:intron	25.0%
!!!	TTGTTTTTCAAATTGTGTCT+AGG	-	chr1_2:54521037-54521056	Msa0077530:intron	25.0%
!	TTAAATTTCAATTTGTGCAG+AGG	-	chr1_2:54521097-54521116	Msa0077530:CDS	25.0%
!	TAAATTTCAATTTGTGCAGA+GGG	-	chr1_2:54521098-54521117	Msa0077530:CDS	25.0%
!!	TATGCAATCAAAAGCATAAA+TGG	+	chr1_2:54521256-54521275	None:intergenic	25.0%
!	AATCTGTTAGAAGTTTCAAA+TGG	-	chr1_2:54521384-54521403	Msa0077530:CDS	25.0%
!	GCTAGTGTTATATTCATAAA+TGG	-	chr1_2:54521725-54521744	Msa0077530:exon	25.0%
	GGTTGAAAATGGAAAAAGAT+TGG	+	chr1_2:54514285-54514304	None:intergenic	30.0%
!!!	TTGTGATTTGTTTGTTTTGC+AGG	-	chr1_2:54514336-54514355	Msa0077530:three_prime_UTR	30.0%
	AAAGCCTCTTGAAATTGATT+GGG	+	chr1_2:54514393-54514412	None:intergenic	30.0%
	GGAAATTGATTGTTAAGAAG+AGG	-	chr1_2:54514660-54514679	Msa0077530:CDS	30.0%
	AATTGATTGTTAAGAAGAGG+AGG	-	chr1_2:54514663-54514682	Msa0077530:CDS	30.0%
	ATTGATTGTTAAGAAGAGGA+GGG	-	chr1_2:54514664-54514683	Msa0077530:intron	30.0%
	TGATAGGTTCAAGATTATGT+TGG	-	chr1_2:54514703-54514722	Msa0077530:intron	30.0%
!	AATTAGGCTTTTAGTGTAGT+TGG	-	chr1_2:54514813-54514832	Msa0077530:intron	30.0%
!!	TTGTGAAATGCTTTTAAGTC+AGG	-	chr1_2:54514851-54514870	Msa0077530:intron	30.0%
	TGGAGCTTATTGTGTAAATT+TGG	-	chr1_2:54514899-54514918	Msa0077530:intron	30.0%
	AAAGTTGTATCTTCATAAGC+TGG	-	chr1_2:54515084-54515103	Msa0077530:intron	30.0%
	TAATATTCATGAGCTTGTCA+AGG	+	chr1_2:54515124-54515143	None:intergenic	30.0%
	AACCCTATAAACTAAGCTAA+GGG	+	chr1_2:54515323-54515342	None:intergenic	30.0%
	AAACCCTATAAACTAAGCTA+AGG	+	chr1_2:54515324-54515343	None:intergenic	30.0%
	CATAATTTCAATTTGTGCAG+AGG	-	chr1_2:54515405-54515424	Msa0077530:intron	30.0%
	TCCTTCTATTTAGTACAACT+TGG	-	chr1_2:54515520-54515539	Msa0077530:intron	30.0%
	TCCAAGTTGTACTAAATAGA+AGG	+	chr1_2:54515524-54515543	None:intergenic	30.0%
!	TTTTGTATCACTAAGACAGT+TGG	-	chr1_2:54515554-54515573	Msa0077530:intron	30.0%
	TCTCGTAACACAAATATCTT+AGG	+	chr1_2:54515593-54515612	None:intergenic	30.0%
	AGACAAAACATGTAACTTAC+AGG	+	chr1_2:54515947-54515966	None:intergenic	30.0%
!	TTATGATTTAAACTTTGGGG+GGG	-	chr1_2:54516178-54516197	Msa0077530:intron	30.0%
!	GAGATTTCAGAAGACTATTT+TGG	-	chr1_2:54516212-54516231	Msa0077530:intron	30.0%
!!!	CCCTGCAAAATTTTTGTTTT+TGG	-	chr1_2:54516520-54516539	Msa0077530:intron	30.0%
	TGTATTTATAAACCGAGCTT+AGG	-	chr1_2:54517273-54517292	Msa0077530:intron	30.0%
	ATACACAAAAAACCTAAGCT+CGG	+	chr1_2:54517288-54517307	None:intergenic	30.0%
!!!	AAAACTGACCTATTTTTGCA+GGG	-	chr1_2:54517982-54518001	Msa0077530:intron	30.0%
!	TTTTTGATCCCTGCAAAAAT+AGG	+	chr1_2:54517993-54518012	None:intergenic	30.0%
!!	TACAAGGTCGCTATTTTATA+GGG	+	chr1_2:54518876-54518895	None:intergenic	30.0%
!!	TTACAAGGTCGCTATTTTAT+AGG	+	chr1_2:54518875-54518894	None:intergenic	30.0%
	AAGTAGAGACTAAACTTACA+AGG	+	chr1_2:54518416-54518435	None:intergenic	30.0%
	CAAGATTAGAACAGTATGAA+AGG	+	chr1_2:54518720-54518739	None:intergenic	30.0%
	AAGTAAGGACTAAACTTACA+AGG	-	chr1_2:54518860-54518879	Msa0077530:intron	30.0%
!!	TTACAAGGTCGCTATTTTAT+AGG	-	chr1_2:54518875-54518894	Msa0077530:intron	30.0%
!!	TACAAGGTCGCTATTTTATA+GGG	-	chr1_2:54518876-54518895	Msa0077530:intron	30.0%
!!!	CCAATTTTGAAATGGATTTC+AGG	+	chr1_2:54519038-54519057	None:intergenic	30.0%
	CCTGAAATCCATTTCAAAAT+TGG	-	chr1_2:54519035-54519054	Msa0077530:intron	30.0%
	AAATCCATTTCAAAATTGGC+AGG	-	chr1_2:54519039-54519058	Msa0077530:intron	30.0%
	AATCCATTTCAAAATTGGCA+GGG	-	chr1_2:54519040-54519059	Msa0077530:intron	30.0%
	GATTAAATTGTGGGTGTATT+TGG	+	chr1_2:54519113-54519132	None:intergenic	30.0%
!!!	TTTTTTTTTAGGGACTTAGC+TGG	-	chr1_2:54519168-54519187	Msa0077530:intron	30.0%
!!!	TTTTTTTTAGGGACTTAGCT+GGG	-	chr1_2:54519169-54519188	Msa0077530:intron	30.0%
	GATTGATTGTTTGTATTGCA+GGG	+	chr1_2:54519315-54519334	None:intergenic	30.0%
	TTGTATAAGTAAAGATGAGG+TGG	-	chr1_2:54519560-54519579	Msa0077530:intron	30.0%
	TGTATAAGTAAAGATGAGGT+GGG	-	chr1_2:54519561-54519580	Msa0077530:intron	30.0%
	GGTTGCAAATAGAAAAAGAT+TGG	+	chr1_2:54519958-54519977	None:intergenic	30.0%
!!!	TTGTGATTTGTTTGTTTTGC+AGG	-	chr1_2:54514336-54514355	Msa0077530:three_prime_UTR	30.0%
	GGAAATTGATTGTTAAGAAG+AGG	-	chr1_2:54514660-54514679	Msa0077530:CDS	30.0%
	AATTGATTGTTAAGAAGAGG+AGG	-	chr1_2:54514663-54514682	Msa0077530:CDS	30.0%
	ATTGATTGTTAAGAAGAGGA+GGG	-	chr1_2:54514664-54514683	Msa0077530:intron	30.0%
	TGATAGGTTCAAGATTATGT+TGG	-	chr1_2:54514703-54514722	Msa0077530:intron	30.0%
	TTGTGAAATGCTCTTAAGTT+GGG	-	chr1_2:54520523-54520542	Msa0077530:intron	30.0%
!	TGCATTTTATAGTGTAAGTG+GGG	-	chr1_2:54520571-54520590	Msa0077530:intron	30.0%
!	TGGAGATACAATGTTTGTTA+GGG	+	chr1_2:54520749-54520768	None:intergenic	30.0%
	ATGGAGATACAATGTTTGTT+AGG	+	chr1_2:54520750-54520769	None:intergenic	30.0%
	TAAAAGATTAAGGGTCTGTT+TGG	+	chr1_2:54520860-54520879	None:intergenic	30.0%
!!!	CTAGAGGTTTTATTGGTATT+AGG	-	chr1_2:54521323-54521342	Msa0077530:CDS	30.0%
	TATGATACCAAGTCATGAAT+CGG	+	chr1_2:54521456-54521475	None:intergenic	30.0%
!	GAGTATTGCAACATTTGTAA+TGG	+	chr1_2:54521479-54521498	None:intergenic	30.0%
	ACTGTTAACATGTAACTTAC+GGG	+	chr1_2:54521603-54521622	None:intergenic	30.0%
	GACTGTTAACATGTAACTTA+CGG	+	chr1_2:54521604-54521623	None:intergenic	30.0%
	GACATTCATACAATGTTTAC+AGG	+	chr1_2:54521655-54521674	None:intergenic	30.0%
!	TCACCATTTTCGATTTTCTG+AGG	+	chr1_2:54514063-54514082	None:intergenic	35.0%
	ATCTCAACAAACCTCTTGAA+CGG	+	chr1_2:54514164-54514183	None:intergenic	35.0%
!!	TTCAAGAGGTTTGTTGAGAT+CGG	-	chr1_2:54514164-54514183	Msa0077530:three_prime_UTR	35.0%
	TTGATGTTATCGACCAAACT+AGG	-	chr1_2:54514240-54514259	Msa0077530:three_prime_UTR	35.0%
	TGATGTTATCGACCAAACTA+GGG	-	chr1_2:54514241-54514260	Msa0077530:three_prime_UTR	35.0%
!	AGAAATTAAGCAAATGGGCT+AGG	+	chr1_2:54514306-54514325	None:intergenic	35.0%
	AAGCCTCTTGAAATTGATTG+GGG	+	chr1_2:54514392-54514411	None:intergenic	35.0%
	GAAAGCCTCTTGAAATTGAT+TGG	+	chr1_2:54514394-54514413	None:intergenic	35.0%
	TGATAGATGTGAAGAACAAG+TGG	-	chr1_2:54514618-54514637	Msa0077530:exon	35.0%
	GATAGATGTGAAGAACAAGT+GGG	-	chr1_2:54514619-54514638	Msa0077530:exon	35.0%
!!	CTGCCCTTAATGATTTTGAT+AGG	-	chr1_2:54514687-54514706	Msa0077530:intron	35.0%
	GATTATGTTGGCCAAGATTA+AGG	-	chr1_2:54514715-54514734	Msa0077530:intron	35.0%
!!!	CTTTTTAGTTAGGCCTTGTT+TGG	-	chr1_2:54514779-54514798	Msa0077530:intron	35.0%
	GGTTATTATACGAGCTGTTA+TGG	-	chr1_2:54514920-54514939	Msa0077530:intron	35.0%
	CAGATTAAGTCTGTTCAGAT+TGG	+	chr1_2:54515186-54515205	None:intergenic	35.0%
!	ACCACACATAAGTTTCAAGT+TGG	-	chr1_2:54515262-54515281	Msa0077530:intron	35.0%
	ACCAACTTGAAACTTATGTG+TGG	+	chr1_2:54515266-54515285	None:intergenic	35.0%
	AAGCCCTTAGCTTAGTTTAT+AGG	-	chr1_2:54515317-54515336	Msa0077530:intron	35.0%
	AGCCCTTAGCTTAGTTTATA+GGG	-	chr1_2:54515318-54515337	Msa0077530:intron	35.0%
!	GAGTATTGCAGCATTTGTAA+TGG	+	chr1_2:54515826-54515845	None:intergenic	35.0%
	CATGGGCAATAACATTTCTT+TGG	+	chr1_2:54516077-54516096	None:intergenic	35.0%
!	CAAAACTGACCTATTTTGCA+GGG	+	chr1_2:54516432-54516451	None:intergenic	35.0%
!!	TAATATTTTTGCAGGGGTCA+GGG	+	chr1_2:54516553-54516572	None:intergenic	35.0%
!!	TTAATATTTTTGCAGGGGTC+AGG	+	chr1_2:54516554-54516573	None:intergenic	35.0%
!	CTGCAAAAATAGGTCAGTTT+TGG	+	chr1_2:54517983-54518002	None:intergenic	35.0%
!!!	CAAAACTGACCTATTTTTGC+AGG	-	chr1_2:54517981-54518000	Msa0077530:intron	35.0%
!!	CAAAACTGGCCTATTTTACA+GGG	-	chr1_2:54518042-54518061	Msa0077530:intron	35.0%
!!!	GTTTTTGGTCCCTGTAAAAT+AGG	+	chr1_2:54518054-54518073	None:intergenic	35.0%
!!	CAAAACTGGTCTATTTTGCA+GGG	-	chr1_2:54518102-54518121	Msa0077530:intron	35.0%
	TACACCTTAAACACCATTAC+AGG	-	chr1_2:54518297-54518316	Msa0077530:intron	35.0%
	CATTCCTGTAATGGTGTTTA+AGG	+	chr1_2:54518304-54518323	None:intergenic	35.0%
	TGCTCTATGTGCATTTGATT+TGG	+	chr1_2:54519085-54519104	None:intergenic	35.0%
	CAGAGTTGGGATTAAATTGT+GGG	+	chr1_2:54519122-54519141	None:intergenic	35.0%
	ACAGAGTTGGGATTAAATTG+TGG	+	chr1_2:54519123-54519142	None:intergenic	35.0%
	CAATTTAATCCCAACTCTGT+TGG	-	chr1_2:54519123-54519142	Msa0077530:intron	35.0%
	TATTGCAGGGTAGCAATTTA+TGG	+	chr1_2:54519302-54519321	None:intergenic	35.0%
	GGATTGATTGTTTGTATTGC+AGG	+	chr1_2:54519316-54519335	None:intergenic	35.0%
	ATCAAGTGTGCTAAGATGTT+TGG	+	chr1_2:54519391-54519410	None:intergenic	35.0%
	GTATAAGTAAAGATGAGGTG+GGG	-	chr1_2:54519562-54519581	Msa0077530:intron	35.0%
!!	TGTTTTATAAAGAGGGGCAT+TGG	+	chr1_2:54519658-54519677	None:intergenic	35.0%
!	TCACCATTTTCGATTTTCTG+AGG	+	chr1_2:54514063-54514082	None:intergenic	35.0%
	ATCTCAACAAACCTCTTGAA+CGG	+	chr1_2:54514164-54514183	None:intergenic	35.0%
!!	TTCAAGAGGTTTGTTGAGAT+CGG	-	chr1_2:54514164-54514183	Msa0077530:three_prime_UTR	35.0%
	TTGATGTTATCGACCAAACT+AGG	-	chr1_2:54514240-54514259	Msa0077530:three_prime_UTR	35.0%
	TGATGTTATCGACCAAACTA+GGG	-	chr1_2:54514241-54514260	Msa0077530:three_prime_UTR	35.0%
	AGAAATTAAGCAAATGGGGT+TGG	+	chr1_2:54519979-54519998	None:intergenic	35.0%
	GAAAGCCTCTTGAAATTGAT+TGG	+	chr1_2:54514394-54514413	None:intergenic	35.0%
	TGATAGATGTGAAGAACAAG+TGG	-	chr1_2:54514618-54514637	Msa0077530:exon	35.0%
	GATAGATGTGAAGAACAAGT+GGG	-	chr1_2:54514619-54514638	Msa0077530:exon	35.0%
!!	CTGCCCTTAATGATTTTGAT+AGG	-	chr1_2:54514687-54514706	Msa0077530:intron	35.0%
	GATTATGTTGGCCAAGATTA+AGG	-	chr1_2:54514715-54514734	Msa0077530:intron	35.0%
!	TTAAGTTGTCTATCCAAGCA+GGG	+	chr1_2:54520465-54520484	None:intergenic	35.0%
!	ATTAAGTTGTCTATCCAAGC+AGG	+	chr1_2:54520466-54520485	None:intergenic	35.0%
	GTTGTGAAATGCTCTTAAGT+TGG	-	chr1_2:54520522-54520541	Msa0077530:intron	35.0%
	TTCTCATAACCCAATTCAAG+CGG	+	chr1_2:54520680-54520699	None:intergenic	35.0%
	GTCTATGAAAAAACGGCTTA+TGG	+	chr1_2:54520769-54520788	None:intergenic	35.0%
!!!	TTTGGATTGGCTTCTTTTTG+AGG	+	chr1_2:54520842-54520861	None:intergenic	35.0%
	AACCCTACATACTCAACTAA+GGG	+	chr1_2:54521012-54521031	None:intergenic	35.0%
	AAACCCTACATACTCAACTA+AGG	+	chr1_2:54521013-54521032	None:intergenic	35.0%
!!	GAAAGAGCTAGAGGTTTTAT+TGG	-	chr1_2:54515685-54515704	Msa0077530:CDS	35.0%
	TGAATTGTCCTAGACTTAGA+GGG	+	chr1_2:54521567-54521586	None:intergenic	35.0%
	TAGCTTATGCATATCATGGT+TGG	+	chr1_2:54521709-54521728	None:intergenic	35.0%
!	ACACTAGCTTATGCATATCA+TGG	+	chr1_2:54521713-54521732	None:intergenic	35.0%
	CATGGGCAATAACATTTCTT+TGG	+	chr1_2:54516077-54516096	None:intergenic	35.0%
	GTGCCTCAGAAAATCGAAAA+TGG	-	chr1_2:54514057-54514076	Msa0077530:three_prime_UTR	40.0%
	AGAGTTGCACTTGTCAACTA+TGG	-	chr1_2:54514188-54514207	Msa0077530:three_prime_UTR	40.0%
!!	GAAAATGGGTTACCCTAGTT+TGG	+	chr1_2:54514256-54514275	None:intergenic	40.0%
!!	CAAATGGGCTAGGTTGAAAA+TGG	+	chr1_2:54514296-54514315	None:intergenic	40.0%
	CAAGAGAGTTCCTAAGAAGA+AGG	-	chr1_2:54514438-54514457	Msa0077530:three_prime_UTR	40.0%
	TTGACGAGATCCTTCTTCTT+AGG	+	chr1_2:54514451-54514470	None:intergenic	40.0%
	TAAGAAGAAGGATCTCGTCA+AGG	-	chr1_2:54514450-54514469	Msa0077530:three_prime_UTR	40.0%
	AACAATCAATTTCCTTCCCC+AGG	+	chr1_2:54514654-54514673	None:intergenic	40.0%
!!	TATAAGCTTTAGGGTCCGTT+TGG	-	chr1_2:54514991-54515010	Msa0077530:intron	40.0%
!	AACTAAGCTAAGGGCTTGTT+TGG	+	chr1_2:54515314-54515333	None:intergenic	40.0%
	ATGAAGTAATGCCTAAGCAG+CGG	+	chr1_2:54515471-54515490	None:intergenic	40.0%
	ATCAAGCAAGAAAGAGCTAG+AGG	-	chr1_2:54515676-54515695	Msa0077530:CDS	40.0%
!	TCCTATACTTGTTACCCTCA+AGG	-	chr1_2:54515852-54515871	Msa0077530:intron	40.0%
	TGCTGAATTGTCCTAGACTA+GGG	+	chr1_2:54515914-54515933	None:intergenic	40.0%
	ATGCTGAATTGTCCTAGACT+AGG	+	chr1_2:54515915-54515934	None:intergenic	40.0%
!	CCAAAACTGACCTATTTTGC+AGG	+	chr1_2:54516433-54516452	None:intergenic	40.0%
!	CCTGCAAAATAGGTCAGTTT+TGG	-	chr1_2:54516430-54516449	Msa0077530:intron	40.0%
!!!	GTTTTTGGTCCCTGCAAAAT+AGG	-	chr1_2:54516480-54516499	Msa0077530:intron	40.0%
!!	CAAAACTGGCCTATTTTGCA+GGG	+	chr1_2:54516492-54516511	None:intergenic	40.0%
!	CCTGTAAAATAGGCCAGTTT+TGG	+	chr1_2:54518044-54518063	None:intergenic	40.0%
!!	CCAAAACTGGCCTATTTTAC+AGG	-	chr1_2:54518041-54518060	Msa0077530:intron	40.0%
!	CCTGCAAAATAGACCAGTTT+TGG	+	chr1_2:54518104-54518123	None:intergenic	40.0%
!!	CCAAAACTGGTCTATTTTGC+AGG	-	chr1_2:54518101-54518120	Msa0077530:intron	40.0%
	ACAAGTGAGCATTCCTGTAA+TGG	+	chr1_2:54518313-54518332	None:intergenic	40.0%
!!	TGACCCTGCCAATTTTGAAA+TGG	+	chr1_2:54519046-54519065	None:intergenic	40.0%
!!	CACATTTTGCGTCGATAATC+TGG	+	chr1_2:54519221-54519240	None:intergenic	40.0%
!!	TAGGTTTGACTTGACACTCA+GGG	+	chr1_2:54519337-54519356	None:intergenic	40.0%
!!	TTAGGTTTGACTTGACACTC+AGG	+	chr1_2:54519338-54519357	None:intergenic	40.0%
!!	ATAAAGAGGGGCATTGGAAT+GGG	+	chr1_2:54519652-54519671	None:intergenic	40.0%
!!	TATAAAGAGGGGCATTGGAA+TGG	+	chr1_2:54519653-54519672	None:intergenic	40.0%
	GTGCCTCAGAAAATCGAAAA+TGG	-	chr1_2:54514057-54514076	Msa0077530:three_prime_UTR	40.0%
	AGAGTTGCACTTGTCAACTA+TGG	-	chr1_2:54514188-54514207	Msa0077530:three_prime_UTR	40.0%
!!	GAAAATGGGTTACCCTAGTT+TGG	+	chr1_2:54514256-54514275	None:intergenic	40.0%
	GAGCTCCAATCAATTTCAAG+AGG	-	chr1_2:54520058-54520077	Msa0077530:intron	40.0%
	CAAGAGAGTTCCTAAGAAGA+AGG	-	chr1_2:54514438-54514457	Msa0077530:three_prime_UTR	40.0%
	TTGACGAGATCCTTCTTCTT+AGG	+	chr1_2:54514451-54514470	None:intergenic	40.0%
	TAAGAAGAAGGATCTCGTCA+AGG	-	chr1_2:54514450-54514469	Msa0077530:three_prime_UTR	40.0%
	AACAATCAATTTCCTTCCCC+AGG	+	chr1_2:54514654-54514673	None:intergenic	40.0%
	TTTGCAGCTTGTAGTTCAAG+TGG	-	chr1_2:54520485-54520504	Msa0077530:intron	40.0%
	TCTCATAACCCAATTCAAGC+GGG	+	chr1_2:54520679-54520698	None:intergenic	40.0%
	GATTAAGGGTCTGTTTGGAT+TGG	+	chr1_2:54520855-54520874	None:intergenic	40.0%
	TGTCTGTGAGTACTTATGTG+TGG	+	chr1_2:54520937-54520956	None:intergenic	40.0%
!	CAGACAGTCTTACATGCTTT+TGG	-	chr1_2:54520951-54520970	Msa0077530:intron	40.0%
	ATGAAGTAATGCCTAAGCTG+CGG	+	chr1_2:54521163-54521182	None:intergenic	40.0%
	ATCAAGCAAGAAAGAGCTAG+AGG	-	chr1_2:54515676-54515695	Msa0077530:CDS	40.0%
	TACAACTCCGATTCATGACT+TGG	-	chr1_2:54521446-54521465	Msa0077530:intron	40.0%
	CTGAATTGTCCTAGACTTAG+AGG	+	chr1_2:54521568-54521587	None:intergenic	40.0%
	CATTGTATGAATGTCCCTTG+TGG	-	chr1_2:54521660-54521679	Msa0077530:intron	40.0%
	TTTCACCAGAATGTCCACAA+GGG	+	chr1_2:54521677-54521696	None:intergenic	40.0%
!	TTTTCACCAGAATGTCCACA+AGG	+	chr1_2:54521678-54521697	None:intergenic	40.0%
	TCTTTGTTCAGCCGTTCAAG+AGG	-	chr1_2:54514150-54514169	Msa0077530:three_prime_UTR	45.0%
	GTCAACTATGGCCCAGATTA+TGG	-	chr1_2:54514200-54514219	Msa0077530:three_prime_UTR	45.0%
	CAACGAGCTTGCCATAATCT+GGG	+	chr1_2:54514214-54514233	None:intergenic	45.0%
	ACAACGAGCTTGCCATAATC+TGG	+	chr1_2:54514215-54514234	None:intergenic	45.0%
	TCTTGTTGATGCACCTGACA+TGG	-	chr1_2:54514360-54514379	Msa0077530:three_prime_UTR	45.0%
	GAGCCCCAATCAATTTCAAG+AGG	-	chr1_2:54514386-54514405	Msa0077530:three_prime_UTR	45.0%
!!	CTTTTAAGTCAGGCCCTGTT+TGG	-	chr1_2:54514861-54514880	Msa0077530:intron	45.0%
!	AGCTAAGGGCTTGTTTGGAT+TGG	+	chr1_2:54515309-54515328	None:intergenic	45.0%
	TTTCAATTTGTGCAGAGGGC+TGG	-	chr1_2:54515410-54515429	Msa0077530:intron	45.0%
	GCCTTGAGGGTAACAAGTAT+AGG	+	chr1_2:54515856-54515875	None:intergenic	45.0%
	TGTTCTTTGCTCCCTAGTCT+AGG	-	chr1_2:54515900-54515919	Msa0077530:CDS	45.0%
	TATGTCTAGCTACTCCCTTG+TGG	-	chr1_2:54516017-54516036	Msa0077530:intron	45.0%
	ATGTCTAGCTACTCCCTTGT+GGG	-	chr1_2:54516018-54516037	Msa0077530:intron	45.0%
	TCACCAGAATATGCCCACAA+GGG	+	chr1_2:54516034-54516053	None:intergenic	45.0%
	TTCACCAGAATATGCCCACA+AGG	+	chr1_2:54516035-54516054	None:intergenic	45.0%
!!	GGTATTGGTCCCTGCAAAAT+AGG	-	chr1_2:54516420-54516439	Msa0077530:intron	45.0%
!!	CCAAAACTGGCCTATTTTGC+AGG	+	chr1_2:54516493-54516512	None:intergenic	45.0%
!	CCTGCAAAATAGGCCAGTTT+TGG	-	chr1_2:54516490-54516509	Msa0077530:intron	45.0%
	GCAGGGACTAAAACCAAAAC+TGG	+	chr1_2:54517967-54517986	None:intergenic	45.0%
	GCAGGGACTAAAACCAAAAC+TGG	-	chr1_2:54517967-54517986	Msa0077530:intron	45.0%
	GCAGGGACTAAAACCAAAAC+TGG	-	chr1_2:54517967-54517986	Msa0077530:intron	45.0%
	GTGAGATGCAACTTCCATCA+GGG	-	chr1_2:54518991-54519010	Msa0077530:intron	45.0%
	TGAGATGCAACTTCCATCAG+GGG	-	chr1_2:54518992-54519011	Msa0077530:intron	45.0%
	CAGCTAATGCCAACAGAGTT+GGG	+	chr1_2:54519135-54519154	None:intergenic	45.0%
	TCAGCTAATGCCAACAGAGT+TGG	+	chr1_2:54519136-54519155	None:intergenic	45.0%
	TCTGTTGGCATTAGCTGAGA+AGG	-	chr1_2:54519138-54519157	Msa0077530:intron	45.0%
!!	TTTTAGGGACTTAGCTGGGA+AGG	-	chr1_2:54519173-54519192	Msa0077530:intron	45.0%
!	CGTCGATAATCTGGAGCATT+TGG	+	chr1_2:54519212-54519231	None:intergenic	45.0%
!!	ACATACAACCTGCGTTGACT+TGG	+	chr1_2:54519275-54519294	None:intergenic	45.0%
	ATTGGAATGGGCCTTTGTTC+GGG	+	chr1_2:54519640-54519659	None:intergenic	45.0%
	CATTGGAATGGGCCTTTGTT+CGG	+	chr1_2:54519641-54519660	None:intergenic	45.0%
	TCTTTGTTCAGCCGTTCAAG+AGG	-	chr1_2:54514150-54514169	Msa0077530:three_prime_UTR	45.0%
	GTCAACTATGGCCCAGATTA+TGG	-	chr1_2:54514200-54514219	Msa0077530:three_prime_UTR	45.0%
	CAACGAGCTTGCCATAATCT+GGG	+	chr1_2:54514214-54514233	None:intergenic	45.0%
	ACAACGAGCTTGCCATAATC+TGG	+	chr1_2:54514215-54514234	None:intergenic	45.0%
	TCTTGTTGATGCACCTGACA+TGG	-	chr1_2:54514360-54514379	Msa0077530:three_prime_UTR	45.0%
!!!	TTTTAAGTTAGGGCCCTGCT+TGG	-	chr1_2:54520449-54520468	Msa0077530:intron	45.0%
!!	CTCTTAAGTTGGGCCTTGTT+TGG	-	chr1_2:54520533-54520552	Msa0077530:intron	45.0%
	TACTCAACTAAGGGCCTGTT+TGG	+	chr1_2:54521003-54521022	None:intergenic	45.0%
	AGGCCCTTAGTTGAGTATGT+AGG	-	chr1_2:54521006-54521025	Msa0077530:intron	45.0%
	GGCCCTTAGTTGAGTATGTA+GGG	-	chr1_2:54521007-54521026	Msa0077530:intron	45.0%
	TTTCAATTTGTGCAGAGGGC+TGG	-	chr1_2:54515410-54515429	Msa0077530:intron	45.0%
!	TCCAACACTTGTTACCCTCA+AGG	-	chr1_2:54521505-54521524	Msa0077530:intron	45.0%
	TCTTTGCTCCCTCTAAGTCT+AGG	-	chr1_2:54521556-54521575	Msa0077530:CDS	45.0%
	AATGTCCCTTGTGGACATTC+TGG	-	chr1_2:54521669-54521688	Msa0077530:intron	45.0%
!!	AAATAAATAAATATATAGAT+AGG	+	chr1_2:54514507-54514526	None:intergenic	5.0%
!!	AAAAAAATATTAAAAAATTC+TGG	-	chr1_2:54516612-54516631	Msa0077530:intron	5.0%
!!	ATAAAAAAATTTAAAAATTC+TGG	-	chr1_2:54516650-54516669	Msa0077530:intron	5.0%
!!	AAAAAAATATTAAAAAATTC+TGG	-	chr1_2:54516612-54516631	Msa0077530:intron	5.0%
!!	AAAAAAATATTAAAAAATTC+TGG	-	chr1_2:54516612-54516631	Msa0077530:intron	5.0%
!!	AATAAAAAAATTAAAAAATC+TGG	-	chr1_2:54516838-54516857	Msa0077530:intron	5.0%
!!	AAAAAAATATTAAAAAATTC+TGG	-	chr1_2:54516612-54516631	Msa0077530:intron	5.0%
!!	AAAAAAATATTAAAAAATTC+TGG	+	chr1_2:54516612-54516631	None:intergenic	5.0%
!!	TTTAAAAAAATAAAAAAATC+TGG	+	chr1_2:54517802-54517821	None:intergenic	5.0%
!!	TAAAAAATATTAAAAAATTC+TGG	+	chr1_2:54517850-54517869	None:intergenic	5.0%
!!	ATAAAAAAATTAAAAAAATC+AGG	+	chr1_2:54517890-54517909	None:intergenic	5.0%
!!!	AATTTTTTTTTTATAGTTTT+TGG	+	chr1_2:54517946-54517965	None:intergenic	5.0%
!!!	ATAAGTAAATTTTTTTTTAT+AGG	-	chr1_2:54518815-54518834	Msa0077530:intron	5.0%
!!!	TAAGTAAATTTTTTTTTATA+GGG	-	chr1_2:54518816-54518835	Msa0077530:intron	5.0%
!!!	AATTAAATTTTAAATGATTT+TGG	+	chr1_2:54519497-54519516	None:intergenic	5.0%
	GAAGGATCTCGTCAAGGCTA+TGG	-	chr1_2:54514456-54514475	Msa0077530:three_prime_UTR	50.0%
!!	GGCAAGAACTTGCTAAGCTG+AGG	-	chr1_2:54515441-54515460	Msa0077530:CDS	50.0%
	ACTCCCTTGTGGGCATATTC+TGG	-	chr1_2:54516028-54516047	Msa0077530:intron	50.0%
!	TAAACTTTGGGGGGGCGTAT+TGG	-	chr1_2:54516186-54516205	Msa0077530:intron	50.0%
	CGTGAGATGCAACTTCCATC+AGG	-	chr1_2:54518990-54519009	Msa0077530:intron	50.0%
	ATGTCTTGCCAAGTCAACGC+AGG	-	chr1_2:54519264-54519283	Msa0077530:intron	50.0%
	ATGGGCCTTTGTTCGGGTAT+GGG	+	chr1_2:54519634-54519653	None:intergenic	50.0%
	AATGGGCCTTTGTTCGGGTA+TGG	+	chr1_2:54519635-54519654	None:intergenic	50.0%
	ATTGGAGCTCTCTCCATGTC+AGG	+	chr1_2:54520048-54520067	None:intergenic	50.0%
	GAAGGATCTCGTCAAGGCTA+TGG	-	chr1_2:54514456-54514475	Msa0077530:three_prime_UTR	50.0%
!!	CTTTAGGGCCCGCTTGAATT+GGG	-	chr1_2:54520668-54520687	Msa0077530:intron	50.0%
!!	GGCAAGAACTTGCTAAGCTG+AGG	-	chr1_2:54515441-54515460	Msa0077530:CDS	50.0%
	GCCTTGAGGGTAACAAGTGT+TGG	+	chr1_2:54521509-54521528	None:intergenic	50.0%
	GGCACTCGCAGCTGAAACAA+AGG	+	chr1_2:54514042-54514061	None:intergenic	55.0%
	ATTGGGGCTCTCTCCATGTC+AGG	+	chr1_2:54514376-54514395	None:intergenic	55.0%
	GTCAAGGCTATGGAAGCTGC+AGG	-	chr1_2:54514466-54514485	Msa0077530:three_prime_UTR	55.0%
	ACAAGTGGGAGAAGAGCTCC+TGG	-	chr1_2:54514633-54514652	Msa0077530:CDS	55.0%
	CAAGTGGGAGAAGAGCTCCT+GGG	-	chr1_2:54514634-54514653	Msa0077530:CDS	55.0%
	AAGTGGGAGAAGAGCTCCTG+GGG	-	chr1_2:54514635-54514654	Msa0077530:CDS	55.0%
!!	TGCAGAGGGCTGGTGTTGTT+AGG	-	chr1_2:54515420-54515439	Msa0077530:intron	55.0%
	TACCCTCAAGGCTGAGAGAG+TGG	-	chr1_2:54515864-54515883	Msa0077530:intron	55.0%
	ACCCTCAAGGCTGAGAGAGT+GGG	-	chr1_2:54515865-54515884	Msa0077530:intron	55.0%
	ACCCACTCTCTCAGCCTTGA+GGG	+	chr1_2:54515869-54515888	None:intergenic	55.0%
	AACCCACTCTCTCAGCCTTG+AGG	+	chr1_2:54515870-54515889	None:intergenic	55.0%
	TTGGGCCCATACCCGAACAA+AGG	-	chr1_2:54519626-54519645	Msa0077530:intron	55.0%
	GGCACTCGCAGCTGAAACAA+AGG	+	chr1_2:54514042-54514061	None:intergenic	55.0%
	GTCAAGGCTATGGAAGCTGC+AGG	-	chr1_2:54514466-54514485	Msa0077530:three_prime_UTR	55.0%
	ACAAGTGGGAGAAGAGCTCC+TGG	-	chr1_2:54514633-54514652	Msa0077530:CDS	55.0%
	CAAGTGGGAGAAGAGCTCCT+GGG	-	chr1_2:54514634-54514653	Msa0077530:CDS	55.0%
	AAGTGGGAGAAGAGCTCCTG+GGG	-	chr1_2:54514635-54514654	Msa0077530:CDS	55.0%
!!	GCTTTAGGGCCCGCTTGAAT+TGG	-	chr1_2:54520667-54520686	Msa0077530:intron	55.0%
!!	TGCAGAGGGCTGGTGTTGTT+AGG	-	chr1_2:54515420-54515439	Msa0077530:intron	55.0%
	TACCCTCAAGGCAGAGAGAG+TGG	-	chr1_2:54521517-54521536	Msa0077530:intron	55.0%
	ACCCTCAAGGCAGAGAGAGT+GGG	-	chr1_2:54521518-54521537	Msa0077530:intron	55.0%
	ACCCACTCTCTCTGCCTTGA+GGG	+	chr1_2:54521522-54521541	None:intergenic	55.0%
	AACCCACTCTCTCTGCCTTG+AGG	+	chr1_2:54521523-54521542	None:intergenic	55.0%
	GCTGAGGAAGACCGCTGCTT+AGG	-	chr1_2:54515457-54515476	Msa0077530:CDS	60.0%
	GCTGAGGAAGACCGCAGCTT+AGG	-	chr1_2:54521149-54521168	Msa0077530:CDS	60.0%
	GGGAGAAGAGCTCCTGGGGA+AGG	-	chr1_2:54514639-54514658	Msa0077530:CDS	65.0%
	GGGAGAAGAGCTCCTGGGGA+AGG	-	chr1_2:54514639-54514658	Msa0077530:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	54514021	54521780	54514021	ID=Msa0077530;Name=Msa0077530
chr1_2	mRNA	54514021	54521780	54514021	ID=Msa0077530-mRNA-1;Parent=Msa0077530;Name=Msa0077530-mRNA-1;_AED=0.15;_eAED=0.15;_QI=55\|0.62\|0.55\|0.88\|1\|1\|9\|610\|234
chr1_2	exon	54514021	54514682	54514021	ID=Msa0077530-mRNA-1:exon:16937;Parent=Msa0077530-mRNA-1
chr1_2	exon	54515424	54515508	54515424	ID=Msa0077530-mRNA-1:exon:16936;Parent=Msa0077530-mRNA-1
chr1_2	exon	54515642	54515771	54515642	ID=Msa0077530-mRNA-1:exon:16935;Parent=Msa0077530-mRNA-1
chr1_2	exon	54515866	54515967	54515866	ID=Msa0077530-mRNA-1:exon:16934;Parent=Msa0077530-mRNA-1
chr1_2	exon	54516607	54516622	54516607	ID=Msa0077530-mRNA-1:exon:16933;Parent=Msa0077530-mRNA-1
chr1_2	exon	54521093	54521177	54521093	ID=Msa0077530-mRNA-1:exon:16932;Parent=Msa0077530-mRNA-1
chr1_2	exon	54521314	54521443	54521314	ID=Msa0077530-mRNA-1:exon:16931;Parent=Msa0077530-mRNA-1
chr1_2	exon	54521539	54521640	54521539	ID=Msa0077530-mRNA-1:exon:16930;Parent=Msa0077530-mRNA-1
chr1_2	exon	54521723	54521780	54521723	ID=Msa0077530-mRNA-1:exon:16929;Parent=Msa0077530-mRNA-1
chr1_2	five_prime_UTR	54521726	54521780	54521726	ID=Msa0077530-mRNA-1:five_prime_utr;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54521723	54521725	54521723	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54521539	54521640	54521539	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54521314	54521443	54521314	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54521093	54521177	54521093	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54516607	54516622	54516607	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54515866	54515967	54515866	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54515642	54515771	54515642	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54515424	54515508	54515424	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	CDS	54514631	54514682	54514631	ID=Msa0077530-mRNA-1:cds;Parent=Msa0077530-mRNA-1
chr1_2	three_prime_UTR	54514021	54514630	54514021	ID=Msa0077530-mRNA-1:three_prime_utr;Parent=Msa0077530-mRNA-1

Gene Sequence

>Msa0077530

ATGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCCCCAATCAATTTCAAGAGGCTTTCCCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAGGCTATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGGGACTTAGCTGGGAAGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAGGCTATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGGGCTGGTGTTGTTAGGCAAGAACTTGCTAAGCTGAGGAAGACCGCAGCTTAG

Protein sequence

>Msa0077530

MPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRDLAGKPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRAGVVRQELAKLRKTAA*