AlfalfaGEDB | Msa1182630

M. sativa cultivar zhongmu-4 / Msa1182630

KEGG: -
GO: -
PFAM: PF16884.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182630	XP_022641619.1	63.462	260	76	4	1	246	1	255	9.45e-105	314

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182630	sp\|Q39173\|P2_ARATH	63.158	133	46	3	6	136	4	135	4.22e-52	175
Msa1182630	sp\|Q39173\|P2_ARATH	64.957	117	41	0	130	246	227	343	3.80e-46	159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036370	Msa1182630	0.805656	1.201587e-49	-8.615850e-47
Msa0090030	Msa1182630	0.832908	7.225677e-56	-8.615850e-47
Msa0099510	Msa1182630	0.839961	1.158443e-57	-8.615850e-47
Msa0163560	Msa1182630	0.803333	3.664241e-49	-8.615850e-47
Msa0198940	Msa1182630	0.802131	6.488454e-49	-8.615850e-47
Msa0208810	Msa1182630	0.843685	1.203695e-58	-8.615850e-47
Msa0212750	Msa1182630	-0.802251	6.129040e-49	-8.615850e-47
Msa0239940	Msa1182630	0.825901	3.640152e-54	-8.615850e-47
Msa0266210	Msa1182630	0.801616	8.278595e-49	-8.615850e-47
Msa0287670	Msa1182630	0.807243	5.560067e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182630	MtrunA17_Chr8g0337471	95.588	136	6	0	1	136	1	136	4.25e-91	272
Msa1182630	MtrunA17_Chr8g0337471	67.361	144	43	2	103	246	205	344	1.30e-61	197
Msa1182630	MtrunA17_Chr8g0337451	82.069	145	22	2	102	246	204	344	3.22e-76	234
Msa1182630	MtrunA17_Chr8g0337451	72.993	137	35	2	1	136	1	136	3.57e-67	211
Msa1182630	MtrunA17_Chr8g0337491	72.789	147	29	1	1	136	1	147	2.98e-70	221
Msa1182630	MtrunA17_Chr8g0337491	68.531	143	41	2	102	244	215	353	5.27e-62	200
Msa1182630	MtrunA17_Chr8g0337491	92.593	54	4	0	1	54	367	420	1.62e-26	106
Msa1182630	MtrunA17_Chr8g0335881	71.533	137	36	2	1	136	1	135	2.77e-65	202
Msa1182630	MtrunA17_Chr8g0337481	68.750	144	41	2	103	246	146	285	1.31e-63	200
Msa1182630	MtrunA17_Chr8g0337481	93.506	77	5	0	60	136	1	77	2.80e-46	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182630	AT5G17000.2	61.940	134	47	3	6	136	5	137	1.22e-53	174
Msa1182630	AT5G16990.1	63.158	133	46	3	6	136	4	135	4.29e-53	175
Msa1182630	AT5G16990.1	64.957	117	41	0	130	246	227	343	3.86e-47	159
Msa1182630	AT5G16970.1	61.194	134	48	3	6	136	5	137	2.28e-52	173
Msa1182630	AT5G16970.1	65.812	117	40	0	130	246	229	345	1.40e-48	163
Msa1182630	AT5G17000.1	61.940	134	47	3	6	136	5	137	2.77e-52	173
Msa1182630	AT5G17000.1	64.957	117	41	0	130	246	229	345	8.61e-48	161
Msa1182630	AT5G37980.1	60.284	141	52	2	106	246	217	353	6.41e-52	172
Msa1182630	AT5G37980.1	55.882	136	53	4	6	136	12	145	6.59e-43	149
Msa1182630	AT3G03080.1	61.594	138	48	3	2	136	7	142	2.29e-50	168

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Find 58 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAGGTGATATAGTGTG+GGG	0.603651	8_1:-17741852	Msa1182630:CDS
AATGGTCCTGCAGCATTGAT+TGG	0.469066	8_1:-17741077	Msa1182630:CDS
ACAACATCGTTGGAACCTTC+TGG	0.323062	8_1:+17742631	None:intergenic
ACCTAGAACTCCAGTATAGT+AGG	0.498495	8_1:+17741749	None:intergenic
ACCTGAACCTGTAACGAATT+TGG	0.245348	8_1:-17741246	Msa1182630:CDS
ACTCCAAGAATTTAGGATTT+AGG	0.194891	8_1:+17741165	None:intergenic
ACTCCAGTATAGTAGGAAAG+AGG	0.571694	8_1:+17741756	None:intergenic
ACTTACAGATTGAGGAACAT+AGG	0.548541	8_1:+17742525	None:intergenic
AGAGTACAGCTTGATCCCTG+CGG	0.754975	8_1:-17741814	Msa1182630:CDS
AGATGTGCCAAATTCGTTAC+AGG	0.319604	8_1:+17741239	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAACTCTTAAGATTCCAGA+AGG	-	chr8_1:17741112-17741131	Msa1182630:CDS	30.0%
TTTAACCAATACAACATCGT+TGG	+	chr8_1:17741140-17741159	None:intergenic	30.0%
TTCCTCAATCTGTAAGTTTA+TGG	-	chr8_1:17741239-17741258	Msa1182630:CDS	30.0%
ATTTACAAACTCGGATTCTT+TGG	-	chr8_1:17741527-17741546	Msa1182630:intron	30.0%
ACACAAATTAGTCACCAAAA+TGG	+	chr8_1:17741563-17741582	None:intergenic	30.0%
GAACACAAAGATTATAAGGA+AGG	-	chr8_1:17741891-17741910	Msa1182630:CDS	30.0%
TTGTTTAGTATCGTTACAGA+CGG	-	chr8_1:17742126-17742145	Msa1182630:intron	30.0%
AAACAACTCTTTCACACAAT+AGG	+	chr8_1:17742172-17742191	None:intergenic	30.0%
TGTCTTATCTTGTTCAACAA+AGG	-	chr8_1:17742232-17742251	Msa1182630:intron	30.0%
CTTGTTCAACAAAGGATATA+CGG	-	chr8_1:17742240-17742259	Msa1182630:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	17741022	17742758	17741022	ID=Msa1182630;Name=Msa1182630
chr8_1	mRNA	17741022	17742758	17741022	ID=Msa1182630-mRNA-1;Parent=Msa1182630;Name=Msa1182630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|3\|0\|246
chr8_1	exon	17742531	17742758	17742531	ID=Msa1182630-mRNA-1:exon:6693;Parent=Msa1182630-mRNA-1
chr8_1	exon	17741751	17741928	17741751	ID=Msa1182630-mRNA-1:exon:6692;Parent=Msa1182630-mRNA-1
chr8_1	exon	17741022	17741356	17741022	ID=Msa1182630-mRNA-1:exon:6691;Parent=Msa1182630-mRNA-1
chr8_1	CDS	17742531	17742758	17742531	ID=Msa1182630-mRNA-1:cds;Parent=Msa1182630-mRNA-1
chr8_1	CDS	17741751	17741928	17741751	ID=Msa1182630-mRNA-1:cds;Parent=Msa1182630-mRNA-1
chr8_1	CDS	17741022	17741356	17741022	ID=Msa1182630-mRNA-1:cds;Parent=Msa1182630-mRNA-1

Gene Sequence

>Msa1182630

ATGGCACAAGTAAAGAACAAGCAAGTGCTTCTGAAACATTATGTGTCTGGTTTTCCTAAAGAATCAGACCTCAACATTGTTGACAGTACCATAACTCTTAAGATTCCAGAAGGTTCCAACGATGTTGTATTGGTTAAAAATCTTTACTTGTCTTGTGATCCTTACATGAGGACTCTTATGAGTGACCCAAAAGCATCTATCAATCCACGTGCCTATGTTCCTCAATCTCCGTTAACTGGTTATGGTGTGTCTAAAGTTGTGGAATCTGAACACAAAGATTATAAGGAAGGTGATATAGTGTGGGGGATAACTAATAGGGAAGAGTACAGCTTGATCCCTGCGGCTCAAATACATTTCAAGATTGAGCATACTGACGTTCCTCTTTCCTACTATACTGGAGTTCTAGGAAAGACACTTGATGCAGTACTTCTGAATATGAGAGTCCATGGCCGCATACCTGCTTGTGGAATGATCTCACAGTACAATCTTACGCAACCTGAACCTGTAACGAATTTGGCACATCTCATATATAAGCGGATTCGAATGGAAGGGTTTAACAGTGCTGATTTCTTTCACCTAAATCCTAAATTCTTGGAGTTTGTCCTCCCTCATATCAGAGACGGGAAAATTGTGTATGTTGAAGACATAACTGAGGGTCTTGAGAATGGTCCTGCAGCATTGATTGGCCTGTATAGTGGTCGCAATGTTGGTAAACAAGTGGTTGTCGTTGCTCGTGAATAG

Protein sequence

>Msa1182630

MAQVKNKQVLLKHYVSGFPKESDLNIVDSTITLKIPEGSNDVVLVKNLYLSCDPYMRTLMSDPKASINPRAYVPQSPLTGYGVSKVVESEHKDYKEGDIVWGITNREEYSLIPAAQIHFKIEHTDVPLSYYTGVLGKTLDAVLLNMRVHGRIPACGMISQYNLTQPEPVTNLAHLIYKRIRMEGFNSADFFHLNPKFLEFVLPHIRDGKIVYVEDITEGLENGPAALIGLYSGRNVGKQVVVVARE*