AlfalfaGEDB | Msa1183770

M. sativa cultivar zhongmu-4 / Msa1183770

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1183770	XP_004490690.1	58.967	736	255	6	7	740	10	700	0.0	868

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1183770	sp\|Q9SZL8\|FRS5_ARATH	33.860	570	369	6	7	570	73	640	2.85e-113	364

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1183770	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0043730	Msa1183770	0.803289	3.742394e-49	-8.615850e-47
Msa0072170	Msa1183770	0.803027	4.239866e-49	-8.615850e-47
Msa0120540	Msa1183770	0.802426	5.640864e-49	-8.615850e-47
Msa0173330	Msa1183770	0.802152	6.425732e-49	-8.615850e-47
Msa0175050	Msa1183770	0.804760	1.850131e-49	-8.615850e-47
Msa0194720	Msa1183770	0.807309	5.382173e-50	-8.615850e-47
Msa0229360	Msa1183770	0.809751	1.620385e-50	-8.615850e-47
Msa0241740	Msa1183770	0.806285	8.857994e-50	-8.615850e-47
Msa0304840	Msa1183770	0.811354	7.303023e-51	-8.615850e-47
Msa0341230	Msa1183770	0.802759	4.816961e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1183770	MtrunA17_Chr2g0324011	63.495	578	210	1	7	583	10	587	0.0	792
Msa1183770	MtrunA17_Chr3g0082121	44.793	605	318	5	2	603	38	629	0.0	536
Msa1183770	MtrunA17_Chr1g0203721	36.321	636	400	4	3	634	59	693	1.42e-151	464
Msa1183770	MtrunA17_Chr7g0258861	68.421	285	86	3	7	287	10	294	1.19e-137	408
Msa1183770	MtrunA17_Chr6g0458391	35.221	565	345	4	2	564	220	765	1.94e-130	405
Msa1183770	MtrunA17_Chr6g0458391	39.394	132	77	3	6	135	90	220	3.86e-21	99.0
Msa1183770	MtrunA17_Chr5g0448761	34.501	571	362	7	7	567	60	628	5.27e-117	370
Msa1183770	MtrunA17_Chr8g0363841	33.106	586	376	8	9	585	19	597	4.08e-109	347
Msa1183770	MtrunA17_Chr2g0287651	31.976	663	415	12	2	651	70	709	2.13e-106	345
Msa1183770	MtrunA17_Chr1g0202341	32.042	568	367	9	7	564	51	609	2.99e-106	339

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1183770	AT4G38180.1	33.860	570	369	6	7	570	73	640	2.90e-114	364
Msa1183770	AT4G15090.1	31.438	598	400	6	7	601	51	641	1.75e-104	339
Msa1183770	AT4G15090.5	31.438	598	400	6	7	601	51	641	1.75e-104	339
Msa1183770	AT4G15090.3	31.438	598	400	6	7	601	51	641	1.75e-104	339
Msa1183770	AT4G15090.2	31.438	598	400	6	7	601	51	641	1.75e-104	339
Msa1183770	AT4G15090.4	31.438	598	400	6	7	601	51	641	1.75e-104	339
Msa1183770	AT1G76320.3	31.879	596	385	10	11	603	1	578	1.17e-92	303
Msa1183770	AT1G76320.2	31.879	596	385	10	11	603	1	578	2.21e-92	304
Msa1183770	AT1G76320.1	31.879	596	385	10	11	603	1	578	2.81e-92	304
Msa1183770	AT1G76320.4	31.879	596	385	10	11	603	1	578	2.81e-92	304

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Find 261 sgRNAs with CRISPR-Local

Find 536 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAAGAAAGTGTAAA+AGG	0.296909	8_1:-19182082	None:intergenic
AAAATAAATCAAACTCATGA+TGG	0.499052	8_1:-19180829	None:intergenic
AAACAGCTGAGTCATTCAAA+TGG	0.542404	8_1:+19180207	Msa1183770:CDS
AAACCAATTCCCAAACCACA+CGG	0.659429	8_1:-19177799	None:intergenic
AAACTACCAAGGATAAAATA+TGG	0.249656	8_1:+19180746	Msa1183770:CDS
AAACTGGAATTGGGCACCAA+CGG	0.608236	8_1:-19173837	None:intergenic
AAAGACGGCTCAATTAGATC+AGG	0.545158	8_1:+19179531	Msa1183770:CDS
AAAGCAATAACATATTCAAA+TGG	0.506576	8_1:-19180890	None:intergenic
AAAGTCAATGCTCATGATGA+AGG	0.533218	8_1:+19181295	Msa1183770:CDS
AAATGACTGTGCCCCTATAG+TGG	0.515233	8_1:-19180160	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACTATTCAGGATTCATGA+CGG	-	chr8_1:19173912-19173931	None:intergenic	30.0%
ACCTTGATATTGTGTCTAAT+TGG	+	chr8_1:19174397-19174416	Msa1183770:intron	30.0%
ACCAATTAGACACAATATCA+AGG	-	chr8_1:19174401-19174420	None:intergenic	30.0%
TTGCATGATACAAACCTTAA+TGG	+	chr8_1:19174591-19174610	Msa1183770:intron	30.0%
TACAAACCTTAATGGAATCA+TGG	+	chr8_1:19174599-19174618	Msa1183770:intron	30.0%
TTCAAACCATGATTCCATTA+AGG	-	chr8_1:19174608-19174627	None:intergenic	30.0%
GACTACTGTTTAAAAATTGG+TGG	+	chr8_1:19174709-19174728	Msa1183770:intron	30.0%
TTACAGCAAATCTTAGAAGA+AGG	-	chr8_1:19175138-19175157	None:intergenic	30.0%
TATAAAAGGATGGAGAAACA+TGG	-	chr8_1:19175252-19175271	None:intergenic	30.0%
AACATTGAATGAGTGTAATG+GGG	+	chr8_1:19175347-19175366	Msa1183770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	19173688	19182097	19173688	ID=Msa1183770;Name=Msa1183770
chr8_1	mRNA	19173688	19182097	19173688	ID=Msa1183770-mRNA-1;Parent=Msa1183770;Name=Msa1183770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=2212\|1\|1\|1\|0.8\|0.90\|11\|278\|749
chr8_1	exon	19173688	19173927	19173688	ID=Msa1183770-mRNA-1:exon:7368;Parent=Msa1183770-mRNA-1
chr8_1	exon	19175081	19175153	19175081	ID=Msa1183770-mRNA-1:exon:7369;Parent=Msa1183770-mRNA-1
chr8_1	exon	19176040	19176087	19176040	ID=Msa1183770-mRNA-1:exon:7370;Parent=Msa1183770-mRNA-1
chr8_1	exon	19176179	19176226	19176179	ID=Msa1183770-mRNA-1:exon:7371;Parent=Msa1183770-mRNA-1
chr8_1	exon	19176330	19176401	19176330	ID=Msa1183770-mRNA-1:exon:7372;Parent=Msa1183770-mRNA-1
chr8_1	exon	19176491	19176646	19176491	ID=Msa1183770-mRNA-1:exon:7373;Parent=Msa1183770-mRNA-1
chr8_1	exon	19176784	19176887	19176784	ID=Msa1183770-mRNA-1:exon:7374;Parent=Msa1183770-mRNA-1
chr8_1	exon	19177613	19179071	19177613	ID=Msa1183770-mRNA-1:exon:7375;Parent=Msa1183770-mRNA-1
chr8_1	exon	19179393	19181477	19179393	ID=Msa1183770-mRNA-1:exon:7376;Parent=Msa1183770-mRNA-1
chr8_1	exon	19181560	19181706	19181560	ID=Msa1183770-mRNA-1:exon:7377;Parent=Msa1183770-mRNA-1
chr8_1	exon	19181790	19182097	19181790	ID=Msa1183770-mRNA-1:exon:7378;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19173688	19173927	19173688	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19175081	19175153	19175081	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19176040	19176087	19176040	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19176179	19176226	19176179	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19176330	19176401	19176330	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19176491	19176646	19176491	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19176784	19176887	19176784	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19177613	19179071	19177613	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	five_prime_UTR	19179393	19179404	19179393	ID=Msa1183770-mRNA-1:five_prime_utr;Parent=Msa1183770-mRNA-1
chr8_1	CDS	19179405	19181477	19179405	ID=Msa1183770-mRNA-1:cds;Parent=Msa1183770-mRNA-1
chr8_1	CDS	19181560	19181706	19181560	ID=Msa1183770-mRNA-1:cds;Parent=Msa1183770-mRNA-1
chr8_1	CDS	19181790	19181819	19181790	ID=Msa1183770-mRNA-1:cds;Parent=Msa1183770-mRNA-1
chr8_1	three_prime_UTR	19181820	19182097	19181820	ID=Msa1183770-mRNA-1:three_prime_utr;Parent=Msa1183770-mRNA-1

Gene Sequence

>Msa1183770

ATGACAATCAATAATACACCCACTGTTGGTATGGAATTTGACAGTGTAGATGAAGCTTGGGAATTTTGGCTTGGTTATGGAAAAGAAATTGGTTTTGGAGTCAGAAAACAGTACTTTAACAGAAAGAAAGACGGCTCAATTAGATCAGGCAGGTTTGTTTGTAGTAAGGAGGGTCATCGACCACCAGATAAAAGGTCATATTCAGTTAAGAACCCTAGGTCTGACACAAGAACTGGTTGTGAAGCAAGAATTGCACTTAGTGTAAAGAATGGGAAATTTGTGATCACAGAGTTCAAAGGAGAACATAACCACCTTTTACAACTTCCTGAAACAACACACATGTTAGCATCTCACCGTAAAATATCTGAAGTCCAAGCACATGAGATTGAAATGGCAGAAGACTCCGGTTTGATGCAAAAATCTTCATTTCAGCTTATGAGTGCACATGCTGGAGGAAGAACTAATCTTGGATATACACCATTGGATGCTAGAAACTACCTCCAAGCAAGAAGACAACGAAGCATGAAGTATGGAGAAATTGGTTGTCTCATGGAGTATTTTCAAACTCAATCATTGGAGAATCCTTCATTTTACCATGCATATCAAATGGATTGCGATGAACTAGTCACAAACGTGTTTTGGGCTGATGCAAAAATGATCTTAGACTATGGTTATTTTGGTGAGGTAGTTTCTTTGGATACGACATATTGCACCAATCGTGCTAATCGACCATTGGCATTGTTTTCAGGCTTCAACCACTATAGGGGCACAGTCATTTTTGGAGCATCCCTTTTGTATGATGAAACAGCTGAGTCATTCAAATGGTTGTTCAAAACTTTTCTTGAAGCACATGGAAACAAAAAGCCACGAACTTTGTTCACTGATCAAGACCAATCAATGGCTAAAGCACTAGCTGAGGTGATGCCAGATACCCGACATGGGTTATGCACATGGCACTTAATGCAGAATGGGATTAAACATCTTGGTTACTTAATGAAAAAAGATCATCATTTCTTGACTTATTTTAAGAAGTGTATGTATGATTATGAACAAGAAGCAATGTTTGAAGAAGCTTGGAGCAAATTGATTGTCGAATTTGATGTTCATGACAAGAAGTGGGTGAAATCAATGTATGCTATCAAGGAAAAATGGGCAGCATGTTACATGAAGGAAGCATTCACCCTTGGCATGCGAAGTACTCAACTTAGCGAGAGCTTAAATTCAAGTTTCAAGGCATGCATGAAACCAGGAATTAATATCGTCCAATTCTTCAAACACTTCGAGAGAGTTGTTGCGGAGAAAAGGTATAACGAGTCAAGATGTGACTATGAGTCAAGACATAAACTACCAAGGATAAAATATGGGCATTCACCGATTCTAAGGCAACTCGCAGAGGTATACACTCATACAGTTTTTGACTTATTCCATCATGAGTTTGATTTATTTTTAGCTGCTAACATAAGACAACGAAATGAATCCCAATATCCATTTGAATATGTTATTGCTTTTGTCGGTGTGGAAGGAGGTTGGAAAGTACTATTTGATCCTGTACAGTCCTCCATATCATGTAGTTGTAGAAAGTTTGAGACTTTTGGAATGCTTTGTTGCCATGCTTTGAAGGTTTTTGAGGCAAATGATGTTAAAATTGTCCCTGATCAATACATTTTGAAAAGGTGGACAAAAAATGCACGAAGTGGTATTATCTTTGATTTTAGGGGAAATGAGGTTGTGGAAGATCCCAAACTATCTAGTATACAACGATACAAGCAACTTTGCTCTATTATGGTTAGATTAGCAGCTGATGTGTCTCCTTTCGAAGATTTGCACGAGCTGGTCCAAAATGGATTGCATGACCTGTGTAATAAAGTAAAGGAGGTTCGATTACAGAAAAAAGTCAATGCTCATGATGAAGGTGAAGTCCCAACAATAACTGCTGAAAATGTTACTCAACCAAGGGGATTTAAGAACCGAGATGGGTTATCAAGGCGTAGGAGGGAAAAAAGTTGGATTGAAAAGCAGCCTAAAGCAAAAAAAGCTCCAACTGAAACACCGTCATCGAGTCAAAGATCTCAGGATGTTGCATCTATAAGTCAGATGGACTGCGGAACATCTCGTTTGGTACATCCTTATGAGTATCAAACAATTGGGAACAGTTTGGCACTTCCTTATGAGTTATCTCAAACAAATGGAAATCAATTTAGTTTTACTAGATTATTGATGGAGTCACATAATCAGAATGAAGGTCAATGA

Protein sequence

>Msa1183770

MTINNTPTVGMEFDSVDEAWEFWLGYGKEIGFGVRKQYFNRKKDGSIRSGRFVCSKEGHRPPDKRSYSVKNPRSDTRTGCEARIALSVKNGKFVITEFKGEHNHLLQLPETTHMLASHRKISEVQAHEIEMAEDSGLMQKSSFQLMSAHAGGRTNLGYTPLDARNYLQARRQRSMKYGEIGCLMEYFQTQSLENPSFYHAYQMDCDELVTNVFWADAKMILDYGYFGEVVSLDTTYCTNRANRPLALFSGFNHYRGTVIFGASLLYDETAESFKWLFKTFLEAHGNKKPRTLFTDQDQSMAKALAEVMPDTRHGLCTWHLMQNGIKHLGYLMKKDHHFLTYFKKCMYDYEQEAMFEEAWSKLIVEFDVHDKKWVKSMYAIKEKWAACYMKEAFTLGMRSTQLSESLNSSFKACMKPGINIVQFFKHFERVVAEKRYNESRCDYESRHKLPRIKYGHSPILRQLAEVYTHTVFDLFHHEFDLFLAANIRQRNESQYPFEYVIAFVGVEGGWKVLFDPVQSSISCSCRKFETFGMLCCHALKVFEANDVKIVPDQYILKRWTKNARSGIIFDFRGNEVVEDPKLSSIQRYKQLCSIMVRLAADVSPFEDLHELVQNGLHDLCNKVKEVRLQKKVNAHDEGEVPTITAENVTQPRGFKNRDGLSRRRREKSWIEKQPKAKKAPTETPSSSQRSQDVASISQMDCGTSRLVHPYEYQTIGNSLALPYELSQTNGNQFSFTRLLMESHNQNEGQ*