Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209010 | AIU48994.1 | 100.000 | 122 | 0 | 0 | 1 | 122 | 17 | 138 | 7.20e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209010 | sp|P93045|BSH_ARATH | 73.770 | 122 | 32 | 0 | 1 | 122 | 119 | 240 | 4.59e-61 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0690150 | Msa1209010 | 0.814847 | 1.250641e-51 | -8.615850e-47 |
| Msa0709400 | Msa1209010 | 0.834363 | 3.129328e-56 | -8.615850e-47 |
| Msa0189290 | Msa1209010 | 0.818285 | 2.123356e-52 | -8.615850e-47 |
| Msa0191050 | Msa1209010 | 0.825196 | 5.349106e-54 | -8.615850e-47 |
| Msa0231650 | Msa1209010 | 0.812394 | 4.334291e-51 | -8.615850e-47 |
| Msa0233350 | Msa1209010 | 0.819609 | 1.061858e-52 | -8.615850e-47 |
| Msa0439200 | Msa1209010 | 0.804437 | 2.160796e-49 | -8.615850e-47 |
| Msa0462430 | Msa1209010 | 0.800879 | 1.171667e-48 | -8.615850e-47 |
| Msa1012320 | Msa1209010 | 0.805416 | 1.349206e-49 | -8.615850e-47 |
| Msa1082500 | Msa1209010 | 0.804673 | 1.929441e-49 | -8.615850e-47 |
| Msa0240110 | Msa1209010 | 0.803849 | 2.864886e-49 | -8.615850e-47 |
| Msa0240150 | Msa1209010 | 0.805371 | 1.378467e-49 | -8.615850e-47 |
| Msa0243100 | Msa1209010 | 0.807460 | 5.000165e-50 | -8.615850e-47 |
| Msa0287650 | Msa1209010 | 0.808677 | 2.753913e-50 | -8.615850e-47 |
| Msa0312650 | Msa1209010 | 0.824047 | 9.970842e-54 | -8.615850e-47 |
| Msa0314720 | Msa1209010 | 0.805018 | 1.634896e-49 | -8.615850e-47 |
| Msa0329350 | Msa1209010 | 0.801911 | 7.200947e-49 | -8.615850e-47 |
| Msa0340090 | Msa1209010 | 0.802130 | 6.493444e-49 | -8.615850e-47 |
| Msa1124960 | Msa1209010 | 0.830463 | 2.896038e-55 | -8.615850e-47 |
| Msa1209010 | Msa1227400 | 0.805268 | 1.448814e-49 | -8.615850e-47 |
| Msa1209010 | Msa1239910 | 0.817896 | 2.599995e-52 | -8.615850e-47 |
| Msa1209010 | Msa1255040 | -0.802569 | 5.271682e-49 | -8.615850e-47 |
| Msa1209010 | Msa1267430 | 0.804363 | 2.239766e-49 | -8.615850e-47 |
| Msa1209010 | Msa1300870 | 0.822116 | 2.813273e-53 | -8.615850e-47 |
| Msa1209010 | Msa1361100 | 0.802712 | 4.926212e-49 | -8.615850e-47 |
| Msa1209010 | Msa1452240 | 0.800610 | 1.329310e-48 | -8.615850e-47 |
| Msa1209010 | Msa1457910 | 0.813392 | 2.620444e-51 | -8.615850e-47 |
| Msa0493630 | Msa1209010 | 0.822701 | 2.058126e-53 | -8.615850e-47 |
| Msa0521430 | Msa1209010 | 0.817984 | 2.483449e-52 | -8.615850e-47 |
| Msa0578040 | Msa1209010 | 0.827575 | 1.450441e-54 | -8.615850e-47 |
| Msa0599520 | Msa1209010 | 0.814816 | 1.270583e-51 | -8.615850e-47 |
| Msa0866950 | Msa1209010 | 0.816791 | 4.608872e-52 | -8.615850e-47 |
| Msa0979010 | Msa1209010 | 0.800302 | 1.536086e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209010 | MtrunA17_Chr4g0069531 | 100.000 | 122 | 0 | 0 | 1 | 122 | 119 | 240 | 1.06e-83 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209010 | AT3G17590.1 | 73.770 | 122 | 32 | 0 | 1 | 122 | 119 | 240 | 4.67e-62 | 189 |
| Msa1209010 | AT3G17590.2 | 73.770 | 122 | 32 | 0 | 1 | 122 | 121 | 242 | 5.59e-62 | 189 |
| Msa1209010 | AT3G17590.3 | 63.934 | 122 | 31 | 1 | 1 | 122 | 119 | 227 | 1.41e-48 | 155 |
Find 45 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGACTTGGTCAAGCTATT+TGG | 0.270286 | 8_1:+67402146 | Msa1209010:CDS |
| AAGGTTCTTGCAAACTCTTC+AGG | 0.281000 | 8_1:-67401576 | None:intergenic |
| TGATTAGGCATGGTTGACTA+TGG | 0.301015 | 8_1:-67403041 | None:intergenic |
| CAAAGGAAGAGAGAAATTTC+AGG | 0.307735 | 8_1:+67403008 | Msa1209010:CDS |
| TTCTCTCTTCCTTTGCTTCA+AGG | 0.322314 | 8_1:-67403000 | None:intergenic |
| GAGAGAAATTTCAGGTGAAT+TGG | 0.352215 | 8_1:+67403016 | Msa1209010:exon |
| GGGCTGACTTCTTTCCAGTC+AGG | 0.438902 | 8_1:+67401983 | Msa1209010:CDS |
| TTATAGGACCAGTAGTCAAT+TGG | 0.443757 | 8_1:+67403138 | Msa1209010:three_prime_UTR |
| GTATTAAATCTAGTGTTGTT+CGG | 0.462848 | 8_1:+67402168 | Msa1209010:CDS |
| TTCTACTGAACTATCTGATT+AGG | 0.471700 | 8_1:-67403056 | None:intergenic |
| AGGCGCTGTAGCAGTGGACT+TGG | 0.473348 | 8_1:+67402133 | Msa1209010:CDS |
| AAGAGAAGAAGCACTGCAAA+AGG | 0.484825 | 8_1:-67403183 | None:intergenic |
| ATGCTGAACCAATTGACTAC+TGG | 0.501325 | 8_1:-67403146 | None:intergenic |
| GATTAGGCATGGTTGACTAT+GGG | 0.503486 | 8_1:-67403040 | None:intergenic |
| ACATGTACTAGTATACTAGT+TGG | 0.515998 | 8_1:+67403113 | Msa1209010:three_prime_UTR |
| AAGGATATCAACTTCCTCGT+TGG | 0.523168 | 8_1:-67402981 | None:intergenic |
| GGCATTGAGGATCCTGAGGT+TGG | 0.528970 | 8_1:+67401612 | Msa1209010:CDS |
| GAAAGCAGATTAAGCAAGAA+GGG | 0.529838 | 8_1:+67401952 | Msa1209010:CDS |
| CTGCAGAGACATGGGCATTG+AGG | 0.530287 | 8_1:+67401599 | Msa1209010:CDS |
| AGAAAGCAGATTAAGCAAGA+AGG | 0.537341 | 8_1:+67401951 | Msa1209010:CDS |
| AAGAACCTTCTGCAGAGACA+TGG | 0.540639 | 8_1:+67401590 | Msa1209010:CDS |
| CTGATGGCAAAGGCAATAGC+TGG | 0.540724 | 8_1:-67401790 | None:intergenic |
| CTCGTAAAGCTGTTCTCTGA+TGG | 0.544456 | 8_1:-67401806 | None:intergenic |
| AGTTGATATCCTTGAAGCAA+AGG | 0.554545 | 8_1:+67402991 | Msa1209010:CDS |
| TAAAGGAGGCGCTGTAGCAG+TGG | 0.556137 | 8_1:+67402127 | Msa1209010:CDS |
| AATGCCCATGTCTCTGCAGA+AGG | 0.565956 | 8_1:-67401595 | None:intergenic |
| GATATACTTACTCCAACCTC+AGG | 0.574479 | 8_1:-67401624 | None:intergenic |
| TTGGATAGAAGATCCACAAT+GGG | 0.575360 | 8_1:-67402962 | None:intergenic |
| TCAGATTGTAGTTCAGAGTG+TGG | 0.590053 | 8_1:+67401918 | Msa1209010:intron |
| ATTAGGCATGGTTGACTATG+GGG | 0.593909 | 8_1:-67403039 | None:intergenic |
| AGAACCTTCTGCAGAGACAT+GGG | 0.593998 | 8_1:+67401591 | Msa1209010:CDS |
| CTGAACTATCTGATTAGGCA+TGG | 0.603506 | 8_1:-67403051 | None:intergenic |
| CATCAGGAAAAGAAAGGAGT+GGG | 0.603636 | 8_1:+67402928 | Msa1209010:intron |
| TAAGCAAGAAGGGTCGTCGA+GGG | 0.614091 | 8_1:+67401962 | Msa1209010:CDS |
| TGAATGCATCAGGAAAAGAA+AGG | 0.623742 | 8_1:+67402922 | Msa1209010:intron |
| CATGGGCATTGAGGATCCTG+AGG | 0.640210 | 8_1:+67401608 | Msa1209010:CDS |
| CATCAGAGAACAGCTTTACG+AGG | 0.641355 | 8_1:+67401807 | Msa1209010:CDS |
| TCATCTGTTGACAGTAAAGG+AGG | 0.644374 | 8_1:+67402113 | Msa1209010:intron |
| GCATCAGGAAAAGAAAGGAG+TGG | 0.653107 | 8_1:+67402927 | Msa1209010:intron |
| TTAAGCAAGAAGGGTCGTCG+AGG | 0.656519 | 8_1:+67401961 | Msa1209010:CDS |
| AAGCAAGAAGGGTCGTCGAG+GGG | 0.658726 | 8_1:+67401963 | Msa1209010:CDS |
| AAGCTGTTCTCTGATGGCAA+AGG | 0.669799 | 8_1:-67401800 | None:intergenic |
| GGATGTATATGAACCCATTG+TGG | 0.673390 | 8_1:+67402949 | Msa1209010:CDS |
| GTTGGATAGAAGATCCACAA+TGG | 0.673673 | 8_1:-67402963 | None:intergenic |
| TGTGGATCTTCTATCCAACG+AGG | 0.802381 | 8_1:+67402967 | Msa1209010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTATTATTAGCAAT+AGG | - | chr8_1:67401652-67401671 | None:intergenic | 10.0% |
| !! | ATTAATTTATTATTAGCAAT+AGG | - | chr8_1:67401652-67401671 | None:intergenic | 10.0% |
| !! | TAAAACCTATAGTAATAATA+GGG | - | chr8_1:67402345-67402364 | None:intergenic | 15.0% |
| !! | TTAAAACCTATAGTAATAAT+AGG | - | chr8_1:67402346-67402365 | None:intergenic | 15.0% |
| !!! | CTTATAAACTACTATTTTTT+GGG | - | chr8_1:67402398-67402417 | None:intergenic | 15.0% |
| !!! | TTCAACTTATTTGTAATTTT+TGG | + | chr8_1:67402702-67402721 | Msa1209010:intron | 15.0% |
| !! | AAATTATAATATAAGCTAAG+TGG | - | chr8_1:67402807-67402826 | None:intergenic | 15.0% |
| !! | AATACAAACATAATCTTAAA+AGG | - | chr8_1:67402834-67402853 | None:intergenic | 15.0% |
| !! | TAAAACCTATAGTAATAATA+GGG | - | chr8_1:67402345-67402364 | None:intergenic | 15.0% |
| !! | TTAAAACCTATAGTAATAAT+AGG | - | chr8_1:67402346-67402365 | None:intergenic | 15.0% |
| !!! | CTTATAAACTACTATTTTTT+GGG | - | chr8_1:67402398-67402417 | None:intergenic | 15.0% |
| !!! | TTCAACTTATTTGTAATTTT+TGG | + | chr8_1:67402702-67402721 | Msa1209010:intron | 15.0% |
| !! | AAATTATAATATAAGCTAAG+TGG | - | chr8_1:67402807-67402826 | None:intergenic | 15.0% |
| !! | AATACAAACATAATCTTAAA+AGG | - | chr8_1:67402834-67402853 | None:intergenic | 15.0% |
| !! | AATTTATTATTAGCAATAGG+TGG | - | chr8_1:67401649-67401668 | None:intergenic | 20.0% |
| !! | ATTTCAAAGTCCATAATAAT+GGG | - | chr8_1:67401705-67401724 | None:intergenic | 20.0% |
| !! | AATTTCAAAGTCCATAATAA+TGG | - | chr8_1:67401706-67401725 | None:intergenic | 20.0% |
| !! | GTATGTTTCAAATTTCAAAA+AGG | - | chr8_1:67401742-67401761 | None:intergenic | 20.0% |
| !!! | AGTTAAAGTTCTTTTTCATA+TGG | + | chr8_1:67402303-67402322 | Msa1209010:intron | 20.0% |
| !!! | GCTTATAAACTACTATTTTT+TGG | - | chr8_1:67402399-67402418 | None:intergenic | 20.0% |
| !! | ATGAACTAACAGATATTAAT+AGG | - | chr8_1:67402495-67402514 | None:intergenic | 20.0% |
| !!! | TTATAAACAAATTTGCTGAT+TGG | + | chr8_1:67402517-67402536 | Msa1209010:intron | 20.0% |
| !! | AATTTATTATTAGCAATAGG+TGG | - | chr8_1:67401649-67401668 | None:intergenic | 20.0% |
| !! | ATTTCAAAGTCCATAATAAT+GGG | - | chr8_1:67401705-67401724 | None:intergenic | 20.0% |
| !! | AATTTCAAAGTCCATAATAA+TGG | - | chr8_1:67401706-67401725 | None:intergenic | 20.0% |
| !! | GTATGTTTCAAATTTCAAAA+AGG | - | chr8_1:67401742-67401761 | None:intergenic | 20.0% |
| !!! | AGTTAAAGTTCTTTTTCATA+TGG | + | chr8_1:67402303-67402322 | Msa1209010:intron | 20.0% |
| !!! | GCTTATAAACTACTATTTTT+TGG | - | chr8_1:67402399-67402418 | None:intergenic | 20.0% |
| !! | ATGAACTAACAGATATTAAT+AGG | - | chr8_1:67402495-67402514 | None:intergenic | 20.0% |
| !!! | TTATAAACAAATTTGCTGAT+TGG | + | chr8_1:67402517-67402536 | Msa1209010:intron | 20.0% |
| ! | TGTAATAGTACCCATTATTA+TGG | + | chr8_1:67401692-67401711 | Msa1209010:intron | 25.0% |
| ! | ATGAAAATGAATTAAGACGA+TGG | - | chr8_1:67401896-67401915 | None:intergenic | 25.0% |
| ! | TTTATCATATCAACTGAACT+AGG | - | chr8_1:67402027-67402046 | None:intergenic | 25.0% |
| !! | GTATTAAATCTAGTGTTGTT+CGG | + | chr8_1:67402168-67402187 | Msa1209010:CDS | 25.0% |
| ! | AGTTTCCCTATTATTACTAT+AGG | + | chr8_1:67402337-67402356 | Msa1209010:intron | 25.0% |
| ! | TTAGCTAATTTGAACATACA+AGG | + | chr8_1:67402658-67402677 | Msa1209010:intron | 25.0% |
| !!! | AGTATACTAGTTGGTTTTAT+AGG | + | chr8_1:67403122-67403141 | Msa1209010:three_prime_UTR | 25.0% |
| ! | TGTAATAGTACCCATTATTA+TGG | + | chr8_1:67401692-67401711 | Msa1209010:intron | 25.0% |
| ! | ATGAAAATGAATTAAGACGA+TGG | - | chr8_1:67401896-67401915 | None:intergenic | 25.0% |
| ! | TTTATCATATCAACTGAACT+AGG | - | chr8_1:67402027-67402046 | None:intergenic | 25.0% |
| !! | GTATTAAATCTAGTGTTGTT+CGG | + | chr8_1:67402168-67402187 | Msa1209010:CDS | 25.0% |
| ! | AGTTTCCCTATTATTACTAT+AGG | + | chr8_1:67402337-67402356 | Msa1209010:intron | 25.0% |
| ! | TTAGCTAATTTGAACATACA+AGG | + | chr8_1:67402658-67402677 | Msa1209010:intron | 25.0% |
| !!! | AGTATACTAGTTGGTTTTAT+AGG | + | chr8_1:67403122-67403141 | Msa1209010:three_prime_UTR | 25.0% |
| TGGGTACTATTACAAATTCA+AGG | - | chr8_1:67401686-67401705 | None:intergenic | 30.0% | |
| GTTCACACGTCATATATATA+TGG | + | chr8_1:67401862-67401881 | Msa1209010:intron | 30.0% | |
| TTGATATAATCCGATCATCT+TGG | + | chr8_1:67402255-67402274 | Msa1209010:intron | 30.0% | |
| !!! | AACTACTATTTTTTGGGCAT+AGG | - | chr8_1:67402392-67402411 | None:intergenic | 30.0% |
| TTAGCTAAAATTGCACAAAC+AGG | - | chr8_1:67402646-67402665 | None:intergenic | 30.0% | |
| ! | TTCTTATGCTTTGACTGTTT+TGG | + | chr8_1:67402898-67402917 | Msa1209010:intron | 30.0% |
| TTCTACTGAACTATCTGATT+AGG | - | chr8_1:67403059-67403078 | None:intergenic | 30.0% | |
| ACATGTACTAGTATACTAGT+TGG | + | chr8_1:67403113-67403132 | Msa1209010:three_prime_UTR | 30.0% | |
| TGGGTACTATTACAAATTCA+AGG | - | chr8_1:67401686-67401705 | None:intergenic | 30.0% | |
| GTTCACACGTCATATATATA+TGG | + | chr8_1:67401862-67401881 | Msa1209010:intron | 30.0% | |
| TTGATATAATCCGATCATCT+TGG | + | chr8_1:67402255-67402274 | Msa1209010:intron | 30.0% | |
| !!! | AACTACTATTTTTTGGGCAT+AGG | - | chr8_1:67402392-67402411 | None:intergenic | 30.0% |
| TTAGCTAAAATTGCACAAAC+AGG | - | chr8_1:67402646-67402665 | None:intergenic | 30.0% | |
| ! | TTCTTATGCTTTGACTGTTT+TGG | + | chr8_1:67402898-67402917 | Msa1209010:intron | 30.0% |
| TTCTACTGAACTATCTGATT+AGG | - | chr8_1:67403059-67403078 | None:intergenic | 30.0% | |
| ACATGTACTAGTATACTAGT+TGG | + | chr8_1:67403113-67403132 | Msa1209010:three_prime_UTR | 30.0% | |
| TACGAGGTCATTCATTCTAT+TGG | + | chr8_1:67401823-67401842 | Msa1209010:intron | 35.0% | |
| AGAAAGCAGATTAAGCAAGA+AGG | + | chr8_1:67401951-67401970 | Msa1209010:CDS | 35.0% | |
| GAAAGCAGATTAAGCAAGAA+GGG | + | chr8_1:67401952-67401971 | Msa1209010:CDS | 35.0% | |
| AAGTGTATGAAAAACCTGAC+TGG | - | chr8_1:67402000-67402019 | None:intergenic | 35.0% | |
| CTATCATCTGTTGACAGTAA+AGG | + | chr8_1:67402110-67402129 | Msa1209010:intron | 35.0% | |
| CTTAAACAGTCCAAGATGAT+CGG | - | chr8_1:67402268-67402287 | None:intergenic | 35.0% | |
| ATCTTGGACTGTTTAAGTCT+TGG | + | chr8_1:67402271-67402290 | Msa1209010:intron | 35.0% | |
| TGAATGCATCAGGAAAAGAA+AGG | + | chr8_1:67402922-67402941 | Msa1209010:intron | 35.0% | |
| TTGGATAGAAGATCCACAAT+GGG | - | chr8_1:67402965-67402984 | None:intergenic | 35.0% | |
| ! | AGTTGATATCCTTGAAGCAA+AGG | + | chr8_1:67402991-67403010 | Msa1209010:CDS | 35.0% |
| CAAAGGAAGAGAGAAATTTC+AGG | + | chr8_1:67403008-67403027 | Msa1209010:CDS | 35.0% | |
| ! | GAGAGAAATTTCAGGTGAAT+TGG | + | chr8_1:67403016-67403035 | Msa1209010:exon | 35.0% |
| TTATAGGACCAGTAGTCAAT+TGG | + | chr8_1:67403138-67403157 | Msa1209010:three_prime_UTR | 35.0% | |
| TACGAGGTCATTCATTCTAT+TGG | + | chr8_1:67401823-67401842 | Msa1209010:intron | 35.0% | |
| AGAAAGCAGATTAAGCAAGA+AGG | + | chr8_1:67401951-67401970 | Msa1209010:CDS | 35.0% | |
| GAAAGCAGATTAAGCAAGAA+GGG | + | chr8_1:67401952-67401971 | Msa1209010:CDS | 35.0% | |
| AAGTGTATGAAAAACCTGAC+TGG | - | chr8_1:67402000-67402019 | None:intergenic | 35.0% | |
| CTATCATCTGTTGACAGTAA+AGG | + | chr8_1:67402110-67402129 | Msa1209010:intron | 35.0% | |
| CTTAAACAGTCCAAGATGAT+CGG | - | chr8_1:67402268-67402287 | None:intergenic | 35.0% | |
| ATCTTGGACTGTTTAAGTCT+TGG | + | chr8_1:67402271-67402290 | Msa1209010:intron | 35.0% | |
| TGAATGCATCAGGAAAAGAA+AGG | + | chr8_1:67402922-67402941 | Msa1209010:intron | 35.0% | |
| TTGGATAGAAGATCCACAAT+GGG | - | chr8_1:67402965-67402984 | None:intergenic | 35.0% | |
| ! | AGTTGATATCCTTGAAGCAA+AGG | + | chr8_1:67402991-67403010 | Msa1209010:CDS | 35.0% |
| CAAAGGAAGAGAGAAATTTC+AGG | + | chr8_1:67403008-67403027 | Msa1209010:CDS | 35.0% | |
| ! | GAGAGAAATTTCAGGTGAAT+TGG | + | chr8_1:67403016-67403035 | Msa1209010:exon | 35.0% |
| TTATAGGACCAGTAGTCAAT+TGG | + | chr8_1:67403138-67403157 | Msa1209010:three_prime_UTR | 35.0% | |
| AAGGTTCTTGCAAACTCTTC+AGG | - | chr8_1:67401579-67401598 | None:intergenic | 40.0% | |
| GATATACTTACTCCAACCTC+AGG | - | chr8_1:67401627-67401646 | None:intergenic | 40.0% | |
| GCTGCAAAACAGTAGCATTT+AGG | - | chr8_1:67401771-67401790 | None:intergenic | 40.0% | |
| TCAGATTGTAGTTCAGAGTG+TGG | + | chr8_1:67401918-67401937 | Msa1209010:intron | 40.0% | |
| TCATCTGTTGACAGTAAAGG+AGG | + | chr8_1:67402113-67402132 | Msa1209010:intron | 40.0% | |
| ATAAGCCTCAAAATCCAGCT+TGG | + | chr8_1:67402413-67402432 | Msa1209010:intron | 40.0% | |
| !! | CAAATTTGCTGATTGGTGCA+AGG | + | chr8_1:67402524-67402543 | Msa1209010:intron | 40.0% |
| GGAGAAGCTACTTGTTTGTT+TGG | + | chr8_1:67402679-67402698 | Msa1209010:intron | 40.0% | |
| AAGCTAAGTGGTTTGATGCA+TGG | - | chr8_1:67402795-67402814 | None:intergenic | 40.0% | |
| !!! | CTGTTTTGGTTGAATGCATC+AGG | + | chr8_1:67402912-67402931 | Msa1209010:intron | 40.0% |
| CATCAGGAAAAGAAAGGAGT+GGG | + | chr8_1:67402928-67402947 | Msa1209010:intron | 40.0% | |
| GGATGTATATGAACCCATTG+TGG | + | chr8_1:67402949-67402968 | Msa1209010:CDS | 40.0% | |
| GTTGGATAGAAGATCCACAA+TGG | - | chr8_1:67402966-67402985 | None:intergenic | 40.0% | |
| AAGGATATCAACTTCCTCGT+TGG | - | chr8_1:67402984-67403003 | None:intergenic | 40.0% | |
| TTCTCTCTTCCTTTGCTTCA+AGG | - | chr8_1:67403003-67403022 | None:intergenic | 40.0% | |
| ATTAGGCATGGTTGACTATG+GGG | - | chr8_1:67403042-67403061 | None:intergenic | 40.0% | |
| GATTAGGCATGGTTGACTAT+GGG | - | chr8_1:67403043-67403062 | None:intergenic | 40.0% | |
| TGATTAGGCATGGTTGACTA+TGG | - | chr8_1:67403044-67403063 | None:intergenic | 40.0% | |
| CTGAACTATCTGATTAGGCA+TGG | - | chr8_1:67403054-67403073 | None:intergenic | 40.0% | |
| ATGCTGAACCAATTGACTAC+TGG | - | chr8_1:67403149-67403168 | None:intergenic | 40.0% | |
| AAGGTTCTTGCAAACTCTTC+AGG | - | chr8_1:67401579-67401598 | None:intergenic | 40.0% | |
| GATATACTTACTCCAACCTC+AGG | - | chr8_1:67401627-67401646 | None:intergenic | 40.0% | |
| GCTGCAAAACAGTAGCATTT+AGG | - | chr8_1:67401771-67401790 | None:intergenic | 40.0% | |
| TCAGATTGTAGTTCAGAGTG+TGG | + | chr8_1:67401918-67401937 | Msa1209010:intron | 40.0% | |
| TCATCTGTTGACAGTAAAGG+AGG | + | chr8_1:67402113-67402132 | Msa1209010:intron | 40.0% | |
| ATAAGCCTCAAAATCCAGCT+TGG | + | chr8_1:67402413-67402432 | Msa1209010:intron | 40.0% | |
| !! | CAAATTTGCTGATTGGTGCA+AGG | + | chr8_1:67402524-67402543 | Msa1209010:intron | 40.0% |
| GGAGAAGCTACTTGTTTGTT+TGG | + | chr8_1:67402679-67402698 | Msa1209010:intron | 40.0% | |
| AAGCTAAGTGGTTTGATGCA+TGG | - | chr8_1:67402795-67402814 | None:intergenic | 40.0% | |
| !!! | CTGTTTTGGTTGAATGCATC+AGG | + | chr8_1:67402912-67402931 | Msa1209010:intron | 40.0% |
| CATCAGGAAAAGAAAGGAGT+GGG | + | chr8_1:67402928-67402947 | Msa1209010:intron | 40.0% | |
| GGATGTATATGAACCCATTG+TGG | + | chr8_1:67402949-67402968 | Msa1209010:CDS | 40.0% | |
| GTTGGATAGAAGATCCACAA+TGG | - | chr8_1:67402966-67402985 | None:intergenic | 40.0% | |
| AAGGATATCAACTTCCTCGT+TGG | - | chr8_1:67402984-67403003 | None:intergenic | 40.0% | |
| TTCTCTCTTCCTTTGCTTCA+AGG | - | chr8_1:67403003-67403022 | None:intergenic | 40.0% | |
| ATTAGGCATGGTTGACTATG+GGG | - | chr8_1:67403042-67403061 | None:intergenic | 40.0% | |
| GATTAGGCATGGTTGACTAT+GGG | - | chr8_1:67403043-67403062 | None:intergenic | 40.0% | |
| TGATTAGGCATGGTTGACTA+TGG | - | chr8_1:67403044-67403063 | None:intergenic | 40.0% | |
| CTGAACTATCTGATTAGGCA+TGG | - | chr8_1:67403054-67403073 | None:intergenic | 40.0% | |
| ATGCTGAACCAATTGACTAC+TGG | - | chr8_1:67403149-67403168 | None:intergenic | 40.0% | |
| AAGAACCTTCTGCAGAGACA+TGG | + | chr8_1:67401590-67401609 | Msa1209010:CDS | 45.0% | |
| AGAACCTTCTGCAGAGACAT+GGG | + | chr8_1:67401591-67401610 | Msa1209010:CDS | 45.0% | |
| AAGCTGTTCTCTGATGGCAA+AGG | - | chr8_1:67401803-67401822 | None:intergenic | 45.0% | |
| CTCGTAAAGCTGTTCTCTGA+TGG | - | chr8_1:67401809-67401828 | None:intergenic | 45.0% | |
| CATCAGAGAACAGCTTTACG+AGG | + | chr8_1:67401807-67401826 | Msa1209010:CDS | 45.0% | |
| ! | GTGGACTTGGTCAAGCTATT+TGG | + | chr8_1:67402146-67402165 | Msa1209010:CDS | 45.0% |
| ! | CCTTACCAAGCTGGATTTTG+AGG | - | chr8_1:67402421-67402440 | None:intergenic | 45.0% |
| CCTCAAAATCCAGCTTGGTA+AGG | + | chr8_1:67402418-67402437 | Msa1209010:intron | 45.0% | |
| TTGGTAAGGCAGTTAAGCAG+CGG | + | chr8_1:67402432-67402451 | Msa1209010:intron | 45.0% | |
| GATTGGTGCAAGGACTATTG+TGG | + | chr8_1:67402534-67402553 | Msa1209010:intron | 45.0% | |
| GCATCAGGAAAAGAAAGGAG+TGG | + | chr8_1:67402927-67402946 | Msa1209010:intron | 45.0% | |
| TGTGGATCTTCTATCCAACG+AGG | + | chr8_1:67402967-67402986 | Msa1209010:CDS | 45.0% | |
| AAGAACCTTCTGCAGAGACA+TGG | + | chr8_1:67401590-67401609 | Msa1209010:CDS | 45.0% | |
| AGAACCTTCTGCAGAGACAT+GGG | + | chr8_1:67401591-67401610 | Msa1209010:CDS | 45.0% | |
| AAGCTGTTCTCTGATGGCAA+AGG | - | chr8_1:67401803-67401822 | None:intergenic | 45.0% | |
| CTCGTAAAGCTGTTCTCTGA+TGG | - | chr8_1:67401809-67401828 | None:intergenic | 45.0% | |
| CATCAGAGAACAGCTTTACG+AGG | + | chr8_1:67401807-67401826 | Msa1209010:CDS | 45.0% | |
| ! | GTGGACTTGGTCAAGCTATT+TGG | + | chr8_1:67402146-67402165 | Msa1209010:CDS | 45.0% |
| ! | CCTTACCAAGCTGGATTTTG+AGG | - | chr8_1:67402421-67402440 | None:intergenic | 45.0% |
| CCTCAAAATCCAGCTTGGTA+AGG | + | chr8_1:67402418-67402437 | Msa1209010:intron | 45.0% | |
| TTGGTAAGGCAGTTAAGCAG+CGG | + | chr8_1:67402432-67402451 | Msa1209010:intron | 45.0% | |
| GATTGGTGCAAGGACTATTG+TGG | + | chr8_1:67402534-67402553 | Msa1209010:intron | 45.0% | |
| GCATCAGGAAAAGAAAGGAG+TGG | + | chr8_1:67402927-67402946 | Msa1209010:intron | 45.0% | |
| TGTGGATCTTCTATCCAACG+AGG | + | chr8_1:67402967-67402986 | Msa1209010:CDS | 45.0% | |
| !! | TTAATATTAAGTAATTTATA+AGG | + | chr8_1:67402362-67402381 | Msa1209010:intron | 5.0% |
| !! | TTAATATTAAGTAATTTATA+AGG | + | chr8_1:67402362-67402381 | Msa1209010:intron | 5.0% |
| AATGCCCATGTCTCTGCAGA+AGG | - | chr8_1:67401598-67401617 | None:intergenic | 50.0% | |
| CTGATGGCAAAGGCAATAGC+TGG | - | chr8_1:67401793-67401812 | None:intergenic | 50.0% | |
| TTAAGCAAGAAGGGTCGTCG+AGG | + | chr8_1:67401961-67401980 | Msa1209010:CDS | 50.0% | |
| TAAGCAAGAAGGGTCGTCGA+GGG | + | chr8_1:67401962-67401981 | Msa1209010:CDS | 50.0% | |
| GCTTAACTGCCTTACCAAGC+TGG | - | chr8_1:67402430-67402449 | None:intergenic | 50.0% | |
| AATGCCCATGTCTCTGCAGA+AGG | - | chr8_1:67401598-67401617 | None:intergenic | 50.0% | |
| CTGATGGCAAAGGCAATAGC+TGG | - | chr8_1:67401793-67401812 | None:intergenic | 50.0% | |
| TTAAGCAAGAAGGGTCGTCG+AGG | + | chr8_1:67401961-67401980 | Msa1209010:CDS | 50.0% | |
| TAAGCAAGAAGGGTCGTCGA+GGG | + | chr8_1:67401962-67401981 | Msa1209010:CDS | 50.0% | |
| GCTTAACTGCCTTACCAAGC+TGG | - | chr8_1:67402430-67402449 | None:intergenic | 50.0% | |
| ! | CTGCAGAGACATGGGCATTG+AGG | + | chr8_1:67401599-67401618 | Msa1209010:CDS | 55.0% |
| !! | CATGGGCATTGAGGATCCTG+AGG | + | chr8_1:67401608-67401627 | Msa1209010:CDS | 55.0% |
| ! | GGCATTGAGGATCCTGAGGT+TGG | + | chr8_1:67401612-67401631 | Msa1209010:CDS | 55.0% |
| AAGCAAGAAGGGTCGTCGAG+GGG | + | chr8_1:67401963-67401982 | Msa1209010:CDS | 55.0% | |
| ! | GGGCTGACTTCTTTCCAGTC+AGG | + | chr8_1:67401983-67402002 | Msa1209010:CDS | 55.0% |
| !! | TAAAGGAGGCGCTGTAGCAG+TGG | + | chr8_1:67402127-67402146 | Msa1209010:CDS | 55.0% |
| ! | CTGCAGAGACATGGGCATTG+AGG | + | chr8_1:67401599-67401618 | Msa1209010:CDS | 55.0% |
| !! | CATGGGCATTGAGGATCCTG+AGG | + | chr8_1:67401608-67401627 | Msa1209010:CDS | 55.0% |
| ! | GGCATTGAGGATCCTGAGGT+TGG | + | chr8_1:67401612-67401631 | Msa1209010:CDS | 55.0% |
| AAGCAAGAAGGGTCGTCGAG+GGG | + | chr8_1:67401963-67401982 | Msa1209010:CDS | 55.0% | |
| ! | GGGCTGACTTCTTTCCAGTC+AGG | + | chr8_1:67401983-67402002 | Msa1209010:CDS | 55.0% |
| !! | TAAAGGAGGCGCTGTAGCAG+TGG | + | chr8_1:67402127-67402146 | Msa1209010:CDS | 55.0% |
| ! | AGGCGCTGTAGCAGTGGACT+TGG | + | chr8_1:67402133-67402152 | Msa1209010:CDS | 60.0% |
| ! | AGGCGCTGTAGCAGTGGACT+TGG | + | chr8_1:67402133-67402152 | Msa1209010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 67401552 | 67403200 | 67401552 | ID=Msa1209010;Name=Msa1209010 |
| chr8_1 | mRNA | 67401552 | 67403200 | 67401552 | ID=Msa1209010-mRNA-1;Parent=Msa1209010;Name=Msa1209010-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.5|0.4|1|1|1|5|167|122 |
| chr8_1 | exon | 67401552 | 67401635 | 67401552 | ID=Msa1209010-mRNA-1:exon:22303;Parent=Msa1209010-mRNA-1 |
| chr8_1 | exon | 67401790 | 67401828 | 67401790 | ID=Msa1209010-mRNA-1:exon:22304;Parent=Msa1209010-mRNA-1 |
| chr8_1 | exon | 67401922 | 67402004 | 67401922 | ID=Msa1209010-mRNA-1:exon:22305;Parent=Msa1209010-mRNA-1 |
| chr8_1 | exon | 67402127 | 67402189 | 67402127 | ID=Msa1209010-mRNA-1:exon:22306;Parent=Msa1209010-mRNA-1 |
| chr8_1 | exon | 67402934 | 67403200 | 67402934 | ID=Msa1209010-mRNA-1:exon:22307;Parent=Msa1209010-mRNA-1 |
| chr8_1 | CDS | 67401552 | 67401635 | 67401552 | ID=Msa1209010-mRNA-1:cds;Parent=Msa1209010-mRNA-1 |
| chr8_1 | CDS | 67401790 | 67401828 | 67401790 | ID=Msa1209010-mRNA-1:cds;Parent=Msa1209010-mRNA-1 |
| chr8_1 | CDS | 67401922 | 67402004 | 67401922 | ID=Msa1209010-mRNA-1:cds;Parent=Msa1209010-mRNA-1 |
| chr8_1 | CDS | 67402127 | 67402189 | 67402127 | ID=Msa1209010-mRNA-1:cds;Parent=Msa1209010-mRNA-1 |
| chr8_1 | CDS | 67402934 | 67403033 | 67402934 | ID=Msa1209010-mRNA-1:cds;Parent=Msa1209010-mRNA-1 |
| chr8_1 | three_prime_UTR | 67403034 | 67403200 | 67403034 | ID=Msa1209010-mRNA-1:three_prime_utr;Parent=Msa1209010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
