AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0314720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314720 MtrunA17_Chr2g0285181 99.020 204 2 0 1 204 1 204 5.29e-154 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314720 AT2G25950.1 83.251 203 34 0 1 203 1 203 1.25e-132 370
Msa0314720 AT2G25950.2 84.293 191 30 0 1 191 1 191 4.27e-126 353

Find 64 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAGTAGCTTCGCCTTTA+AGG 0.060495 2_4:+10636084 None:intergenic
TTGCACTTTCCTGATAATTT+TGG 0.141609 2_4:-10636137 Msa0314720:CDS
GTACACTATATTGGCCTTAA+AGG 0.210471 2_4:-10636098 Msa0314720:CDS
GAACACCGTTTGAATACTTC+TGG 0.251384 2_4:-10641244 Msa0314720:CDS
GTCGGGTGAAAATACATAAA+TGG 0.304827 2_4:-10635300 Msa0314720:exon
TTTAATGAAGGAATGGGATT+TGG 0.310224 2_4:-10638900 Msa0314720:intron
TATCATGCAATGAAATAATT+TGG 0.311299 2_4:-10635211 Msa0314720:three_prime_UTR
TCCATCAGCTCCACCAACTA+TGG 0.358505 2_4:+10639797 None:intergenic
CTCGGTGGGTGCAGTGAAAA+TGG 0.367765 2_4:-10641476 Msa0314720:exon
ACTACCAAAGTACACTATAT+TGG 0.369869 2_4:-10636107 Msa0314720:CDS
ACCATGATTGTTCCTCTGAT+TGG 0.373066 2_4:-10641426 Msa0314720:CDS
GTGTCACCTCCAAAATTATC+AGG 0.375063 2_4:+10636128 None:intergenic
ACAAAGCATGCAAGCCATTC+AGG 0.395846 2_4:-10639001 Msa0314720:intron
ATGACAATGATTACCTTGTC+TGG 0.446088 2_4:+10638849 None:intergenic
AACAACTTACGCTCTCATCT+TGG 0.454085 2_4:+10639764 None:intergenic
TGAGAATTTGCAAGGAGTAT+TGG 0.456970 2_4:-10638876 Msa0314720:CDS
AACACCGTTTGAATACTTCT+GGG 0.457430 2_4:-10641243 Msa0314720:CDS
ATTAGGTATTCTAAATTTCA+AGG 0.477316 2_4:-10636176 Msa0314720:intron
TCCATAGTTGGTGGAGCTGA+TGG 0.477827 2_4:-10639798 Msa0314720:CDS
GTGGAGGTCTTTCACATGTC+GGG 0.482074 2_4:-10635317 Msa0314720:CDS
TGGCTAGATACTTGTTGATC+TGG 0.483936 2_4:-10635153 Msa0314720:three_prime_UTR
CCTTAAAGGCGAAGCTACTC+AGG 0.490216 2_4:-10636084 Msa0314720:intron
TACAACATCGCTTGCTCGGT+GGG 0.492704 2_4:-10641490 Msa0314720:five_prime_UTR
TACTTGTGATCAGAAGGATT+CGG 0.503892 2_4:+10635944 None:intergenic
AAGGCCAATATAGTGTACTT+TGG 0.504360 2_4:+10636103 None:intergenic
CATAAGCTCGTAAACAATAG+TGG 0.504441 2_4:+10635967 None:intergenic
TACTGGATAACACTATCTCT+CGG 0.509014 2_4:-10635266 Msa0314720:three_prime_UTR
CAAACACATTGATCTCGAAA+AGG 0.510565 2_4:-10641395 Msa0314720:intron
CGGGCGTAAAAGAATACAGT+TGG 0.512511 2_4:-10635246 Msa0314720:three_prime_UTR
TATTCTAAATTTCAAGGTGT+GGG 0.516199 2_4:-10636170 Msa0314720:CDS
AATCTACAACATCGCTTGCT+CGG 0.523546 2_4:-10641494 Msa0314720:five_prime_UTR
ATTAAGAGCATATCCATAGT+TGG 0.528832 2_4:-10639810 Msa0314720:CDS
AGAAAGAAAATATACCTGAA+TGG 0.532458 2_4:+10638987 None:intergenic
TTCAATTCAACAGGAACACT+TGG 0.545144 2_4:-10641125 Msa0314720:intron
ACACGTGCTGAAAGCGGTGG+AGG 0.548694 2_4:-10635333 Msa0314720:CDS
AGTACTTACTTGTGATCAGA+AGG 0.548789 2_4:+10635938 None:intergenic
TAAATATCTTTGTAGAACAA+TGG 0.559377 2_4:-10635078 Msa0314720:three_prime_UTR
GGTGGAGGTCTTTCACATGT+CGG 0.561265 2_4:-10635318 Msa0314720:CDS
TATGTAACTTACATCGACTC+CGG 0.563664 2_4:+10635186 None:intergenic
AAAACTGATTTAGCACTACC+AGG 0.567973 2_4:+10641277 None:intergenic
ACTGGATAACACTATCTCTC+GGG 0.568514 2_4:-10635265 Msa0314720:three_prime_UTR
GTATTCTAAATTTCAAGGTG+TGG 0.569021 2_4:-10636171 Msa0314720:CDS
ACCAATCAGAGGAACAATCA+TGG 0.570397 2_4:+10641425 None:intergenic
AATCATGGTCTTCACAGCTA+TGG 0.574162 2_4:+10641440 None:intergenic
GCTTTGAATGAAGCTACTCC+TGG 0.576045 2_4:-10641295 Msa0314720:CDS
ATGTAACTTACATCGACTCC+GGG 0.581518 2_4:+10635187 None:intergenic
GATTTGGCTGAGAATTTGCA+AGG 0.582316 2_4:-10638884 Msa0314720:CDS
ACTTACGCTCTCATCTTGGA+AGG 0.585832 2_4:+10639768 None:intergenic
CTACAACATCGCTTGCTCGG+TGG 0.587670 2_4:-10641491 Msa0314720:five_prime_UTR
GAACACTTGGAAAGCAATGA+GGG 0.588803 2_4:-10641112 Msa0314720:CDS
GCAATGAAATAATTTGGTCC+CGG 0.590148 2_4:-10635205 Msa0314720:three_prime_UTR
TACAGGACACGTGCTGAAAG+CGG 0.598434 2_4:-10635339 Msa0314720:intron
TTACCCCAGAAGTATTCAAA+CGG 0.599587 2_4:+10641239 None:intergenic
ATCAGGTTCATCAATAGAGA+TGG 0.601933 2_4:-10639042 Msa0314720:intron
GGAACACTTGGAAAGCAATG+AGG 0.612240 2_4:-10641113 Msa0314720:CDS
GGAATGAATACAATTAACTC+AGG 0.615947 2_4:+10641085 None:intergenic
ACACCGTTTGAATACTTCTG+GGG 0.623405 2_4:-10641242 Msa0314720:intron
AAGAGCATATCCATAGTTGG+TGG 0.623635 2_4:-10639807 Msa0314720:CDS
TTTGTGCGATAGATTCACTT+CGG 0.624035 2_4:-10639841 Msa0314720:intron
CTTACGCTCTCATCTTGGAA+GGG 0.631404 2_4:+10639769 None:intergenic
AAGTTACATATGAAATTCTG+TGG 0.643926 2_4:-10635173 Msa0314720:three_prime_UTR
GAGTATTGGAATACCAGACA+AGG 0.668076 2_4:-10638862 Msa0314720:intron
AGGACACGTGCTGAAAGCGG+TGG 0.670321 2_4:-10635336 Msa0314720:CDS
TTTGTAGAGAGACCAATCAG+AGG 0.715030 2_4:+10641414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAAAATTAAAGAAAA+GGG + chr2_4:10635199-10635218 None:intergenic 10.0%
!! TATTCATAAAATTAAAGAAA+AGG + chr2_4:10635200-10635219 None:intergenic 10.0%
!!! GTTTTAATGTTTAATTTTTT+TGG - chr2_4:10635394-10635413 Msa0314720:intron 10.0%
!! AATTAATTTATATACATTAG+AGG + chr2_4:10635873-10635892 None:intergenic 10.0%
!!! AATTTATCTTTAAAATTTAC+CGG - chr2_4:10636048-10636067 Msa0314720:intron 10.0%
!!! GATTTATTTATTTTTAATGA+AGG - chr2_4:10637640-10637659 Msa0314720:intron 10.0%
!! ATATAAAATATCATAGATAA+AGG - chr2_4:10638639-10638658 Msa0314720:intron 10.0%
!!! TTTTTTATTTTATAGTTTTG+TGG + chr2_4:10638690-10638709 None:intergenic 10.0%
!! TATAAAATAAAAAACAATCA+AGG - chr2_4:10638696-10638715 Msa0314720:intron 10.0%
!!! ATTTTAAATCATATAAACAA+AGG - chr2_4:10639096-10639115 Msa0314720:intron 10.0%
!! TTAAACATTAAAACAGATTA+AGG + chr2_4:10635388-10635407 None:intergenic 15.0%
!!! TTTAATTTTTTTGGTAATCA+TGG - chr2_4:10635403-10635422 Msa0314720:intron 15.0%
!!! TCCATTTTTATTTATAACAT+TGG - chr2_4:10636655-10636674 Msa0314720:intron 15.0%
!! ACCAATGTTATAAATAAAAA+TGG + chr2_4:10636659-10636678 None:intergenic 15.0%
!!! ATTTATTTTTAATGAAGGAA+TGG - chr2_4:10637645-10637664 Msa0314720:intron 15.0%
!!! TTTATTTTTAATGAAGGAAT+GGG - chr2_4:10637646-10637665 Msa0314720:intron 15.0%
!! GAATAACTAAAATGATAAAT+TGG + chr2_4:10637732-10637751 None:intergenic 15.0%
!! TTAAAAAAATCCAAAACAAA+CGG + chr2_4:10637920-10637939 None:intergenic 15.0%
!!! TTTTTTGTTTTAACTTTTTC+TGG + chr2_4:10639057-10639076 None:intergenic 15.0%
!! AAAATTACAAAACAACAATA+TGG - chr2_4:10639142-10639161 Msa0314720:intron 15.0%
!!! ATTTAGAATACCTAATAAAA+AGG + chr2_4:10640372-10640391 None:intergenic 15.0%
!! AAAATTAAAGAAAAGGGAAA+GGG + chr2_4:10635193-10635212 None:intergenic 20.0%
!! TAAAATTAAAGAAAAGGGAA+AGG + chr2_4:10635194-10635213 None:intergenic 20.0%
!! TGAATAATAGAAGTAACTTA+CGG + chr2_4:10635491-10635510 None:intergenic 20.0%
!! TAAGTAGTTAAATTACATGT+GGG + chr2_4:10635823-10635842 None:intergenic 20.0%
!! ATAAGTAGTTAAATTACATG+TGG + chr2_4:10635824-10635843 None:intergenic 20.0%
!!! TTTTTATACAAATTGTCTGA+TGG - chr2_4:10635988-10636007 Msa0314720:CDS 20.0%
!! GTGACAATAATTGTAAATTT+GGG + chr2_4:10636631-10636650 None:intergenic 20.0%
!! TGTGACAATAATTGTAAATT+TGG + chr2_4:10636632-10636651 None:intergenic 20.0%
!!! AATAACGTCCATTTTAAATT+TGG + chr2_4:10636951-10636970 None:intergenic 20.0%
!!! ATCAATTTGAGTTATTCATA+TGG - chr2_4:10637074-10637093 Msa0314720:intron 20.0%
!!! ATTTTCTTTCTAATTTTCCA+AGG - chr2_4:10637577-10637596 Msa0314720:intron 20.0%
!! TAAAAAAATCCAAAACAAAC+GGG + chr2_4:10637919-10637938 None:intergenic 20.0%
!!! AACTTCAATAGATTTCTTTT+AGG + chr2_4:10638202-10638221 None:intergenic 20.0%
!!! ACTACTTATATTCTATTTTC+TGG + chr2_4:10638389-10638408 None:intergenic 20.0%
!!! TTTGATTTCAATGATAAATG+AGG + chr2_4:10638472-10638491 None:intergenic 20.0%
!!! TCTATGATATTTTATATAGC+TGG + chr2_4:10638636-10638655 None:intergenic 20.0%
!! CATATATATATCTTTCTTTC+TGG + chr2_4:10638820-10638839 None:intergenic 20.0%
!!! ATGATTTAAAATTACCTTAC+TGG + chr2_4:10639088-10639107 None:intergenic 20.0%
!!! CTTTGTTGTCTATAATATTT+TGG + chr2_4:10639252-10639271 None:intergenic 20.0%
!! AGGTCAAATTTAATTCATAA+CGG - chr2_4:10639930-10639949 Msa0314720:intron 20.0%
!! AAACATACAATAATTTAACG+TGG - chr2_4:10640093-10640112 Msa0314720:intron 20.0%
!! TTAGATATAAGTATGATATG+AGG - chr2_4:10640264-10640283 Msa0314720:intron 20.0%
!! ATTAGGTATTCTAAATTTCA+AGG - chr2_4:10640376-10640395 Msa0314720:intron 20.0%
!!! ATCTTTTTACTGTAAAATTC+AGG - chr2_4:10640493-10640512 Msa0314720:intron 20.0%
!!! TCTTTTTACTGTAAAATTCA+GGG - chr2_4:10640494-10640513 Msa0314720:intron 20.0%
!! AAAAAGAAAAAGCTAAGATT+AGG + chr2_4:10640747-10640766 None:intergenic 20.0%
!! TCAAAATTTAAATGCTTTCT+TGG - chr2_4:10640968-10640987 Msa0314720:intron 20.0%
!!! AAATGGTTTTATTTTGTTAC+TGG - chr2_4:10641269-10641288 Msa0314720:CDS 20.0%
!! TATCATGCAATGAAATAATT+TGG - chr2_4:10641341-10641360 Msa0314720:intron 20.0%
!! TAAATATCTTTGTAGAACAA+TGG - chr2_4:10641474-10641493 Msa0314720:exon 20.0%
! TTCTTCTTCTTCTTCAATTT+GGG + chr2_4:10635030-10635049 None:intergenic 25.0%
!! TAAATCAGTTTTCAAAGCTT+GGG - chr2_4:10635286-10635305 Msa0314720:three_prime_UTR 25.0%
! GATGATAAGTTATCAAAACA+AGG + chr2_4:10635574-10635593 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAG+TGG + chr2_4:10635788-10635807 None:intergenic 25.0%
! CAGTTCAATATATTAGAGAT+GGG + chr2_4:10635923-10635942 None:intergenic 25.0%
! ACAGTTCAATATATTAGAGA+TGG + chr2_4:10635924-10635943 None:intergenic 25.0%
! CTCTAATATATTGAACTGTT+TGG - chr2_4:10635925-10635944 Msa0314720:intron 25.0%
!! GTTTCTCTAATAGTTTTTCT+AGG + chr2_4:10636175-10636194 None:intergenic 25.0%
!! TGCTTCTTTTCATATTTGTA+TGG - chr2_4:10636580-10636599 Msa0314720:intron 25.0%
!!! TGAAGAAGCTTTATTGTATT+TGG - chr2_4:10636818-10636837 Msa0314720:intron 25.0%
!! CTTAAAACGGAACTATTTTA+AGG + chr2_4:10636882-10636901 None:intergenic 25.0%
!!! AAATAGTTCCGTTTTAAGAT+CGG - chr2_4:10636884-10636903 Msa0314720:intron 25.0%
! GACATCAACCAAATTTAAAA+TGG - chr2_4:10636940-10636959 Msa0314720:intron 25.0%
!! ATAACTCAAATTGATTTCAC+AGG + chr2_4:10637069-10637088 None:intergenic 25.0%
! ATAAGAACTCAATCATACAA+AGG + chr2_4:10637189-10637208 None:intergenic 25.0%
! ATAAAAGAACAGGAAAACAA+AGG + chr2_4:10637302-10637321 None:intergenic 25.0%
! AAAAGTCAGTAATAGAAAAG+TGG + chr2_4:10637383-10637402 None:intergenic 25.0%
!!! ACTTTTCTATTACTGACTTT+TGG - chr2_4:10637382-10637401 Msa0314720:intron 25.0%
!!! TATTACTGACTTTTGGATAA+AGG - chr2_4:10637389-10637408 Msa0314720:intron 25.0%
! TCAAATATTCTCTACACAAA+AGG - chr2_4:10637469-10637488 Msa0314720:intron 25.0%
! AGAAAGAAAATATACCTGAA+TGG + chr2_4:10637568-10637587 None:intergenic 25.0%
! ATGAATACTTCACAATATGA+TGG + chr2_4:10637754-10637773 None:intergenic 25.0%
!!! AAATGACTTTTTTAGCAAGA+AGG + chr2_4:10638017-10638036 None:intergenic 25.0%
!!! TTAATTGGCTTTTCATTTTG+CGG + chr2_4:10638044-10638063 None:intergenic 25.0%
! CTTTGCTAATCTACTTTAAT+TGG + chr2_4:10638059-10638078 None:intergenic 25.0%
! TGTTAAAGAGGACATATATA+TGG + chr2_4:10638315-10638334 None:intergenic 25.0%
!! GTAGAATATTTTTCTCATCA+TGG - chr2_4:10638407-10638426 Msa0314720:intron 25.0%
!! ATTTGAGATCTCAATAGATT+GGG + chr2_4:10638791-10638810 None:intergenic 25.0%
! GATATATATATGAGCAACAA+AGG - chr2_4:10638828-10638847 Msa0314720:intron 25.0%
! GTTGCTTGAATTTAACAATA+CGG - chr2_4:10638914-10638933 Msa0314720:intron 25.0%
! ATTACAAAACAACAATATGG+TGG - chr2_4:10639145-10639164 Msa0314720:intron 25.0%
! AAGAAATTAAGCAAGAAACA+TGG - chr2_4:10639269-10639288 Msa0314720:intron 25.0%
!!! ACCCAAAAAGTATTTAAAAG+CGG + chr2_4:10639338-10639357 None:intergenic 25.0%
!!! TTTAAATACTTTTTGGGTAG+AGG - chr2_4:10639340-10639359 Msa0314720:intron 25.0%
!!! TTAAATACTTTTTGGGTAGA+GGG - chr2_4:10639341-10639360 Msa0314720:intron 25.0%
!! AAAAGCTTCTAAATTTGTTC+AGG + chr2_4:10639544-10639563 None:intergenic 25.0%
!!! ATTTAGAAGCTTTTGATTGT+CGG - chr2_4:10639550-10639569 Msa0314720:intron 25.0%
!! ATGCATCAATCCTTTTTATT+AGG - chr2_4:10640359-10640378 Msa0314720:intron 25.0%
! TATTCTAAATTTCAAGGTGT+GGG - chr2_4:10640382-10640401 Msa0314720:intron 25.0%
!! ATTTTGTAGAGACAAAAAAG+AGG + chr2_4:10641104-10641123 None:intergenic 25.0%
! TTAGGAAAGAAAAACAATCA+TGG + chr2_4:10641176-10641195 None:intergenic 25.0%
! AAAAGAATGCATTAGTGATT+AGG + chr2_4:10641194-10641213 None:intergenic 25.0%
! AAGTTACATATGAAATTCTG+TGG - chr2_4:10641379-10641398 Msa0314720:intron 25.0%
CTTCTTCTTCTTCTTCAATT+TGG + chr2_4:10635031-10635050 None:intergenic 30.0%
TTTGTCGAAATTTCTGTTTC+AGG - chr2_4:10635229-10635248 Msa0314720:three_prime_UTR 30.0%
! CTAAATCAGTTTTCAAAGCT+TGG - chr2_4:10635285-10635304 Msa0314720:three_prime_UTR 30.0%
GGAATGAATACAATTAACTC+AGG + chr2_4:10635470-10635489 None:intergenic 30.0%
!!! GGCATTAGTGTTTTAAAAGT+AGG + chr2_4:10635553-10635572 None:intergenic 30.0%
!! TAACCCATTTCTAGTACTAT+AGG - chr2_4:10635613-10635632 Msa0314720:intron 30.0%
TCACCTATAGTACTAGAAAT+GGG + chr2_4:10635619-10635638 None:intergenic 30.0%
TTCACCTATAGTACTAGAAA+TGG + chr2_4:10635620-10635639 None:intergenic 30.0%
ATAAGCTGAAACACAACTTA+TGG - chr2_4:10635708-10635727 Msa0314720:intron 30.0%
AAGTACTTGTGATACTGTTT+GGG + chr2_4:10635762-10635781 None:intergenic 30.0%
TAAGTACTTGTGATACTGTT+TGG + chr2_4:10635763-10635782 None:intergenic 30.0%
ATGAAATAAATGTGTGTGAG+TGG - chr2_4:10636530-10636549 Msa0314720:intron 30.0%
!! CTTTGCTTTTGAATATGCAT+TGG - chr2_4:10636553-10636572 Msa0314720:intron 30.0%
! ATTAAGAGCATATCCATAGT+TGG - chr2_4:10636742-10636761 Msa0314720:intron 30.0%
!! AGAAGCTTTATTGTATTTGG+TGG - chr2_4:10636821-10636840 Msa0314720:intron 30.0%
!! GAAGCTTTATTGTATTTGGT+GGG - chr2_4:10636822-10636841 Msa0314720:intron 30.0%
! GAATGATAAGTGTCATTGAA+TGG + chr2_4:10637001-10637020 None:intergenic 30.0%
TGACACTTATCATTCATGAT+TGG - chr2_4:10637006-10637025 Msa0314720:intron 30.0%
AAGGGATATGATGATAAAGA+AGG + chr2_4:10637123-10637142 None:intergenic 30.0%
TGATTGAGTTCTTATATCCT+TGG - chr2_4:10637194-10637213 Msa0314720:intron 30.0%
! TGTTCTTTTATAAATGTCCC+CGG - chr2_4:10637311-10637330 Msa0314720:intron 30.0%
TGAGAAATTCATCTTGAATC+AGG - chr2_4:10637493-10637512 Msa0314720:intron 30.0%
CGATTTGTCAATTAATTCCT+TGG + chr2_4:10637597-10637616 None:intergenic 30.0%
ATCAGTATTATACAAAGCTG+TGG + chr2_4:10637623-10637642 None:intergenic 30.0%
TTTAATGAAGGAATGGGATT+TGG - chr2_4:10637652-10637671 Msa0314720:intron 30.0%
GATTAGCAAAGTTTAACAGA+AGG - chr2_4:10638068-10638087 Msa0314720:intron 30.0%
! AGCATTGTTGTTAGTTATAG+TGG - chr2_4:10638099-10638118 Msa0314720:intron 30.0%
!! CTTCTTCTGAATTATTTTGC+TGG + chr2_4:10638252-10638271 None:intergenic 30.0%
ATATATGTCCTCTTTAACAC+TGG - chr2_4:10638316-10638335 Msa0314720:intron 30.0%
!! CTTTGTTATAGAGCATTGAA+GGG + chr2_4:10638355-10638374 None:intergenic 30.0%
!! ACTTTGTTATAGAGCATTGA+AGG + chr2_4:10638356-10638375 None:intergenic 30.0%
!! ATTCTATTTTCTGGCATAAC+TGG + chr2_4:10638380-10638399 None:intergenic 30.0%
! TTTTCTCATCATGGTCAAAT+AGG - chr2_4:10638416-10638435 Msa0314720:intron 30.0%
TTTCTCATCATGGTCAAATA+GGG - chr2_4:10638417-10638436 Msa0314720:intron 30.0%
! GTTGTCATGATGTTATTTAC+CGG - chr2_4:10638503-10638522 Msa0314720:intron 30.0%
! GATTTGAGATCTCAATAGAT+TGG + chr2_4:10638792-10638811 None:intergenic 30.0%
!!! ATCCTTATTTTTGCTTCCTA+TGG + chr2_4:10638862-10638881 None:intergenic 30.0%
! CCAGAAAAATGAGTTGAATA+GGG + chr2_4:10638957-10638976 None:intergenic 30.0%
! TCCAGAAAAATGAGTTGAAT+AGG + chr2_4:10638958-10638977 None:intergenic 30.0%
AAAAAATCCACAAACCAGTA+AGG - chr2_4:10639071-10639090 Msa0314720:intron 30.0%
!! AAAATTACCTTACTGGTTTG+TGG + chr2_4:10639081-10639100 None:intergenic 30.0%
!!! TGCCGCTTTTAAATACTTTT+TGG - chr2_4:10639333-10639352 Msa0314720:intron 30.0%
!!! GCCGCTTTTAAATACTTTTT+GGG - chr2_4:10639334-10639353 Msa0314720:intron 30.0%
ATTGTGCAACAAATGTGTTT+CGG + chr2_4:10639397-10639416 None:intergenic 30.0%
ATTAACACAAATATCAGAGC+TGG + chr2_4:10639440-10639459 None:intergenic 30.0%
TCATTTCAACCTCTATACAA+AGG - chr2_4:10639510-10639529 Msa0314720:intron 30.0%
TGCCTTGAAATTGACTAAAA+CGG - chr2_4:10639786-10639805 Msa0314720:CDS 30.0%
TACAATAATTTAACGTGGCA+TGG - chr2_4:10640098-10640117 Msa0314720:intron 30.0%
ACAATAATTTAACGTGGCAT+GGG - chr2_4:10640099-10640118 Msa0314720:intron 30.0%
GCCTAAAAATTCTAGGTTTA+GGG - chr2_4:10640210-10640229 Msa0314720:intron 30.0%
! ACCCTAAACCTAGAATTTTT+AGG + chr2_4:10640214-10640233 None:intergenic 30.0%
GTATTCTAAATTTCAAGGTG+TGG - chr2_4:10640381-10640400 Msa0314720:intron 30.0%
! TTGCACTTTCCTGATAATTT+TGG - chr2_4:10640415-10640434 Msa0314720:intron 30.0%
ACTACCAAAGTACACTATAT+TGG - chr2_4:10640445-10640464 Msa0314720:intron 30.0%
ATTTAGATGAATGTCATGGA+AGG + chr2_4:10640680-10640699 None:intergenic 30.0%
CATCATTTAGATGAATGTCA+TGG + chr2_4:10640684-10640703 None:intergenic 30.0%
CATGACATTCATCTAAATGA+TGG - chr2_4:10640682-10640701 Msa0314720:intron 30.0%
ATCGCAATGTACAAAAACAT+GGG + chr2_4:10641127-10641146 None:intergenic 30.0%
! TTTTGTACATTGCGATGATT+CGG - chr2_4:10641131-10641150 Msa0314720:intron 30.0%
! TCACTAATGCATTCTTTTAC+AGG - chr2_4:10641196-10641215 Msa0314720:intron 30.0%
CAAACACATTGATCTCGAAA+AGG - chr2_4:10635157-10635176 Msa0314720:three_prime_UTR 35.0%
! AAAGAAAAGGGAAAGGGTTT+TGG + chr2_4:10635187-10635206 None:intergenic 35.0%
! AAAACTGATTTAGCACTACC+AGG + chr2_4:10635278-10635297 None:intergenic 35.0%
AACACCGTTTGAATACTTCT+GGG - chr2_4:10635309-10635328 Msa0314720:exon 35.0%
!! TTACCCCAGAAGTATTCAAA+CGG + chr2_4:10635316-10635335 None:intergenic 35.0%
AATCATGGCTTCAATTCAAC+AGG - chr2_4:10635418-10635437 Msa0314720:intron 35.0%
TTCAATTCAACAGGAACACT+TGG - chr2_4:10635427-10635446 Msa0314720:intron 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG - chr2_4:10635672-10635691 Msa0314720:intron 35.0%
! TATTGAACTGTTTGGAACTG+CGG - chr2_4:10635933-10635952 Msa0314720:intron 35.0%
ACCATCTTCTCTACTAATGA+AGG + chr2_4:10636074-10636093 None:intergenic 35.0%
TAGAGAAGATGGTAGAAACT+AGG - chr2_4:10636081-10636100 Msa0314720:intron 35.0%
GATTCATATCACTAGAGGTA+GGG - chr2_4:10636144-10636163 Msa0314720:CDS 35.0%
TATTAGAGAAACTGCCAAGA+AGG - chr2_4:10636183-10636202 Msa0314720:intron 35.0%
ATTGATCTCTAGATCCTTCT+TGG + chr2_4:10636200-10636219 None:intergenic 35.0%
TAGAACACTATGACATCGTT+TGG - chr2_4:10636246-10636265 Msa0314720:intron 35.0%
! GTGGACTGAACTACATAATA+TGG - chr2_4:10636315-10636334 Msa0314720:intron 35.0%
AAAGAACAATGACACTGTCA+AGG + chr2_4:10636482-10636501 None:intergenic 35.0%
TAATGAACTACTGTAGCAGT+AGG - chr2_4:10636507-10636526 Msa0314720:intron 35.0%
TTTGTGCGATAGATTCACTT+CGG - chr2_4:10636711-10636730 Msa0314720:intron 35.0%
TCAATGCCAAGCATAAAAGA+AGG + chr2_4:10636922-10636941 None:intergenic 35.0%
! CTCAAATTGATTTCACAGGT+TGG + chr2_4:10637065-10637084 None:intergenic 35.0%
TGAAACAGCACAGATGATAA+GGG + chr2_4:10637141-10637160 None:intergenic 35.0%
ATGAAACAGCACAGATGATA+AGG + chr2_4:10637142-10637161 None:intergenic 35.0%
TGAGTTCTTATATCCTTGGT+TGG - chr2_4:10637198-10637217 Msa0314720:intron 35.0%
TATATCCTTGGTTGGATATC+AGG - chr2_4:10637206-10637225 Msa0314720:intron 35.0%
ATATCCTTGGTTGGATATCA+GGG - chr2_4:10637207-10637226 Msa0314720:intron 35.0%
GGGGACATTTATAAAAGAAC+AGG + chr2_4:10637312-10637331 None:intergenic 35.0%
! GTTCTTTTATAAATGTCCCC+GGG - chr2_4:10637312-10637331 Msa0314720:intron 35.0%
TCTTACAATATCTACTCCCA+AGG + chr2_4:10637344-10637363 None:intergenic 35.0%
ATTTAGTGCTTGGATCAACA+AGG - chr2_4:10637418-10637437 Msa0314720:intron 35.0%
ATCAGGTTCATCAATAGAGA+TGG - chr2_4:10637510-10637529 Msa0314720:intron 35.0%
! TGAGAATTTGCAAGGAGTAT+TGG - chr2_4:10637676-10637695 Msa0314720:intron 35.0%
ATGACAATGATTACCTTGTC+TGG + chr2_4:10637706-10637725 None:intergenic 35.0%
TTTGATGTCCAGTGTTAAAG+AGG + chr2_4:10638327-10638346 None:intergenic 35.0%
TCTTTAACACTGGACATCAA+AGG - chr2_4:10638326-10638345 Msa0314720:intron 35.0%
CAAATAGGGAATGCATAGTT+TGG - chr2_4:10638431-10638450 Msa0314720:intron 35.0%
! CGTCTTTTAGACTTTTGTAC+CGG + chr2_4:10638525-10638544 None:intergenic 35.0%
GATAGCTTCATCACATATCT+TGG - chr2_4:10638544-10638563 Msa0314720:intron 35.0%
! TCTTGGAAGCAAAGTTCTAA+TGG - chr2_4:10638561-10638580 Msa0314720:intron 35.0%
AACAAAGGTTAGATCACCAT+AGG - chr2_4:10638843-10638862 Msa0314720:intron 35.0%
CACCATAGGAAGCAAAAATA+AGG - chr2_4:10638857-10638876 Msa0314720:intron 35.0%
!! CCCTATTCAACTCATTTTTC+TGG - chr2_4:10638954-10638973 Msa0314720:intron 35.0%
CAAATATCAGAGCTGGTATT+TGG + chr2_4:10639433-10639452 None:intergenic 35.0%
AAGAATTGGAACCTGATTGA+CGG + chr2_4:10639837-10639856 None:intergenic 35.0%
CGATCGCGATAAAAAGATTA+AGG - chr2_4:10639882-10639901 Msa0314720:intron 35.0%
ACATGCTTTCATTCTTGGAT+AGG - chr2_4:10639955-10639974 Msa0314720:intron 35.0%
! TGTATAGTTAAGTGCTGCAT+GGG - chr2_4:10640070-10640089 Msa0314720:intron 35.0%
CTGAAGTCAGATTAGATCAA+AGG - chr2_4:10640134-10640153 Msa0314720:intron 35.0%
CGCCTAAAAATTCTAGGTTT+AGG - chr2_4:10640209-10640228 Msa0314720:intron 35.0%
AAGAAAACTCCAATGAGATG+AGG + chr2_4:10640314-10640333 None:intergenic 35.0%
GATGCATTAAAAAACCATGC+TGG + chr2_4:10640346-10640365 None:intergenic 35.0%
! CACTTTCCTGATAATTTTGG+AGG - chr2_4:10640418-10640437 Msa0314720:intron 35.0%
AAGGCCAATATAGTGTACTT+TGG + chr2_4:10640452-10640471 None:intergenic 35.0%
!! GTACACTATATTGGCCTTAA+AGG - chr2_4:10640454-10640473 Msa0314720:intron 35.0%
CATAAGCTCGTAAACAATAG+TGG + chr2_4:10640588-10640607 None:intergenic 35.0%
TACTTGTGATCAGAAGGATT+CGG + chr2_4:10640611-10640630 None:intergenic 35.0%
AGTACTTACTTGTGATCAGA+AGG + chr2_4:10640617-10640636 None:intergenic 35.0%
ACTGTTGAGTTCTCTACATT+AGG - chr2_4:10640717-10640736 Msa0314720:intron 35.0%
GAACTAGAATCGTCTTATGT+TGG - chr2_4:10640814-10640833 Msa0314720:intron 35.0%
AAATTCCAAACCCGATTGTT+AGG - chr2_4:10640893-10640912 Msa0314720:intron 35.0%
! TTTTACAGGTCCTAACAATC+GGG + chr2_4:10640906-10640925 None:intergenic 35.0%
! CTTTTACAGGTCCTAACAAT+CGG + chr2_4:10640907-10640926 None:intergenic 35.0%
TTGTTAGGACCTGTAAAAGA+TGG - chr2_4:10640908-10640927 Msa0314720:intron 35.0%
CAAGAAAGCTATGCTTCTTA+TGG + chr2_4:10641048-10641067 None:intergenic 35.0%
CATCGCAATGTACAAAAACA+TGG + chr2_4:10641128-10641147 None:intergenic 35.0%
GTCGGGTGAAAATACATAAA+TGG - chr2_4:10641252-10641271 Msa0314720:CDS 35.0%
TACTGGATAACACTATCTCT+CGG - chr2_4:10641286-10641305 Msa0314720:CDS 35.0%
GCAATGAAATAATTTGGTCC+CGG - chr2_4:10641347-10641366 Msa0314720:intron 35.0%
!! TATGTAACTTACATCGACTC+CGG + chr2_4:10641369-10641388 None:intergenic 35.0%
AATCTACAACATCGCTTGCT+CGG - chr2_4:10635058-10635077 Msa0314720:three_prime_UTR 40.0%
AATCATGGTCTTCACAGCTA+TGG + chr2_4:10635115-10635134 None:intergenic 40.0%
ACCATGATTGTTCCTCTGAT+TGG - chr2_4:10635126-10635145 Msa0314720:three_prime_UTR 40.0%
ACCAATCAGAGGAACAATCA+TGG + chr2_4:10635130-10635149 None:intergenic 40.0%
TTTGTAGAGAGACCAATCAG+AGG + chr2_4:10635141-10635160 None:intergenic 40.0%
GAACACCGTTTGAATACTTC+TGG - chr2_4:10635308-10635327 Msa0314720:exon 40.0%
ACACCGTTTGAATACTTCTG+GGG - chr2_4:10635310-10635329 Msa0314720:exon 40.0%
GAACACTTGGAAAGCAATGA+GGG - chr2_4:10635440-10635459 Msa0314720:intron 40.0%
ATACTGTTTGGGAGAGCTTA+TGG + chr2_4:10635751-10635770 None:intergenic 40.0%
TCTTCTCTACTAATGAAGGC+CGG + chr2_4:10636070-10636089 None:intergenic 40.0%
GCCTTCATTAGTAGAGAAGA+TGG - chr2_4:10636070-10636089 Msa0314720:intron 40.0%
AGATGGTAGAAACTAGGCTT+AGG - chr2_4:10636087-10636106 Msa0314720:CDS 40.0%
AAACTAGGCTTAGGTGGTTT+GGG - chr2_4:10636096-10636115 Msa0314720:CDS 40.0%
GGATTCATATCACTAGAGGT+AGG - chr2_4:10636143-10636162 Msa0314720:CDS 40.0%
GGATCTAGAGATCAATGAGT+TGG - chr2_4:10636204-10636223 Msa0314720:intron 40.0%
! CAATGAGTTGGAGAAAGACA+TGG - chr2_4:10636216-10636235 Msa0314720:intron 40.0%
! ATAAGGCTTGGTTGTTGTTG+TGG - chr2_4:10636296-10636315 Msa0314720:intron 40.0%
! AAGAGCATATCCATAGTTGG+TGG - chr2_4:10636745-10636764 Msa0314720:intron 40.0%
AACAACTTACGCTCTCATCT+TGG + chr2_4:10636791-10636810 None:intergenic 40.0%
! GATGAGAGCGTAAGTTGTTA+TGG - chr2_4:10636792-10636811 Msa0314720:intron 40.0%
!!! TAGTTCCGTTTTAAGATCGG+AGG - chr2_4:10636887-10636906 Msa0314720:intron 40.0%
GCTTTCCTCCGATCTTAAAA+CGG + chr2_4:10636895-10636914 None:intergenic 40.0%
ATGCCAAGCATAAAAGAAGG+TGG + chr2_4:10636919-10636938 None:intergenic 40.0%
AAGGCAATGCATTTAGTGCT+TGG - chr2_4:10637408-10637427 Msa0314720:intron 40.0%
GATTTGGCTGAGAATTTGCA+AGG - chr2_4:10637668-10637687 Msa0314720:intron 40.0%
!! GAGTATTGGAATACCAGACA+AGG - chr2_4:10637690-10637709 Msa0314720:intron 40.0%
TTCTCCATTGTTTATGACCC+GGG + chr2_4:10637874-10637893 None:intergenic 40.0%
CTTCTCCATTGTTTATGACC+CGG + chr2_4:10637875-10637894 None:intergenic 40.0%
! TTTATGACGCCCGTTTGTTT+TGG - chr2_4:10637907-10637926 Msa0314720:intron 40.0%
GTTATAGTGGCAGTTGTGAA+TGG - chr2_4:10638112-10638131 Msa0314720:intron 40.0%
! CTTTTAGGCTTTGCTGCATA+AGG + chr2_4:10638187-10638206 None:intergenic 40.0%
AGTAAGCACCTAGATTGACA+AGG - chr2_4:10638984-10639003 Msa0314720:intron 40.0%
AGTGTAGTCCTTGTCAATCT+AGG + chr2_4:10638995-10639014 None:intergenic 40.0%
GAACGTTCTCCTTTGTATAG+AGG + chr2_4:10639522-10639541 None:intergenic 40.0%
TGATATGAGTAGAAAGGCAG+CGG + chr2_4:10639692-10639711 None:intergenic 40.0%
CGATGGTGATATGAGTAGAA+AGG + chr2_4:10639698-10639717 None:intergenic 40.0%
!! GGCCGTTTTAGTCAATTTCA+AGG + chr2_4:10639791-10639810 None:intergenic 40.0%
CGTCGACAGAGATAAAGAAT+TGG + chr2_4:10639851-10639870 None:intergenic 40.0%
TGAAAGACAGAGAAAGAGAG+AGG - chr2_4:10639910-10639929 Msa0314720:intron 40.0%
CATGCAGCACTTAACTATAC+AGG + chr2_4:10640071-10640090 None:intergenic 40.0%
! CTGTATAGTTAAGTGCTGCA+TGG - chr2_4:10640069-10640088 Msa0314720:intron 40.0%
TTGGATCAAATCATCTGGCT+AGG + chr2_4:10640172-10640191 None:intergenic 40.0%
AGCCAGATGATTTGATCCAA+CGG - chr2_4:10640172-10640191 Msa0314720:intron 40.0%
GATTGGCGCCTAAAAATTCT+AGG - chr2_4:10640203-10640222 Msa0314720:intron 40.0%
GTGTCACCTCCAAAATTATC+AGG + chr2_4:10640427-10640446 None:intergenic 40.0%
ACTGTAAAATTCAGGGCTGT+TGG - chr2_4:10640501-10640520 Msa0314720:intron 40.0%
! AACCATGGACCATCTTTTAC+AGG + chr2_4:10640920-10640939 None:intergenic 40.0%
GTAAAAGATGGTCCATGGTT+CGG - chr2_4:10640920-10640939 Msa0314720:intron 40.0%
TAAACTGATCTACCGAACCA+TGG + chr2_4:10640935-10640954 None:intergenic 40.0%
GTTCGGTAGATCAGTTTAGA+GGG - chr2_4:10640937-10640956 Msa0314720:intron 40.0%
ACTGGATAACACTATCTCTC+GGG - chr2_4:10641287-10641306 Msa0314720:CDS 40.0%
!! ATGTAACTTACATCGACTCC+GGG + chr2_4:10641368-10641387 None:intergenic 40.0%
! TGGCTAGATACTTGTTGATC+TGG - chr2_4:10641399-10641418 Msa0314720:CDS 40.0%
! GCTTTGAATGAAGCTACTCC+TGG - chr2_4:10635257-10635276 Msa0314720:three_prime_UTR 45.0%
GGAACACTTGGAAAGCAATG+AGG - chr2_4:10635439-10635458 Msa0314720:intron 45.0%
TGGTAGAAACTAGGCTTAGG+TGG - chr2_4:10636090-10636109 Msa0314720:CDS 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - chr2_4:10636095-10636114 Msa0314720:CDS 45.0%
ATGGAGAGTAGATCAGATGG+AGG - chr2_4:10636120-10636139 Msa0314720:CDS 45.0%
TGGAGAGTAGATCAGATGGA+GGG - chr2_4:10636121-10636140 Msa0314720:CDS 45.0%
GAGGGGATTCATATCACTAG+AGG - chr2_4:10636139-10636158 Msa0314720:CDS 45.0%
TTACATGAGCCAGAGATCAC+TGG - chr2_4:10636443-10636462 Msa0314720:intron 45.0%
CAGTTAATGCCAGTGATCTC+TGG + chr2_4:10636455-10636474 None:intergenic 45.0%
CTTACGCTCTCATCTTGGAA+GGG + chr2_4:10636786-10636805 None:intergenic 45.0%
ACTTACGCTCTCATCTTGGA+AGG + chr2_4:10636787-10636806 None:intergenic 45.0%
! GCACCACCTTCTTTTATGCT+TGG - chr2_4:10636913-10636932 Msa0314720:intron 45.0%
! GATTTCACAGGTTGGACTCT+AGG + chr2_4:10637057-10637076 None:intergenic 45.0%
ATCACCCTGATATCCAACCA+AGG + chr2_4:10637214-10637233 None:intergenic 45.0%
TACTCCCAAGGTTAAATCCC+GGG + chr2_4:10637332-10637351 None:intergenic 45.0%
CTACTCCCAAGGTTAAATCC+CGG + chr2_4:10637333-10637352 None:intergenic 45.0%
ACAAAGCATGCAAGCCATTC+AGG - chr2_4:10637551-10637570 Msa0314720:intron 45.0%
ATGGATGAATGATACCGCCA+TGG - chr2_4:10639288-10639307 Msa0314720:intron 45.0%
TGGATGAATGATACCGCCAT+GGG - chr2_4:10639289-10639308 Msa0314720:intron 45.0%
!!! TTTTTGGGTAGAGGGTGTCA+AGG - chr2_4:10639349-10639368 Msa0314720:intron 45.0%
!!! TTTTGGGTAGAGGGTGTCAA+GGG - chr2_4:10639350-10639369 Msa0314720:intron 45.0%
!! CAGAGCTGGTATTTGGTTTG+TGG + chr2_4:10639426-10639445 None:intergenic 45.0%
TCGGAAACCTTCATCAGACT+CGG - chr2_4:10639569-10639588 Msa0314720:intron 45.0%
GTTCTTTCCGAGTCTGATGA+AGG + chr2_4:10639579-10639598 None:intergenic 45.0%
AGTCTCTTTCCCTTTGAACG+CGG - chr2_4:10639600-10639619 Msa0314720:intron 45.0%
GAGTAACAGAGGGAGTGAAT+CGG + chr2_4:10639761-10639780 None:intergenic 45.0%
AGGCACGTAAGAGTAACAGA+GGG + chr2_4:10639771-10639790 None:intergenic 45.0%
AAGGCACGTAAGAGTAACAG+AGG + chr2_4:10639772-10639791 None:intergenic 45.0%
TTCTTTATCTCTGTCGACGC+AGG - chr2_4:10639852-10639871 Msa0314720:intron 45.0%
CGGTCACATGCTTTCATTCT+TGG - chr2_4:10639950-10639969 Msa0314720:intron 45.0%
! TGTCACCATTTTCCCACAAG+TGG + chr2_4:10640002-10640021 None:intergenic 45.0%
GTCCGTTGGATCAAATCATC+TGG + chr2_4:10640177-10640196 None:intergenic 45.0%
ATCCAACGGACATGCTTGAT+TGG - chr2_4:10640186-10640205 Msa0314720:intron 45.0%
! GTGTCATTGCCTCATCTCAT+TGG - chr2_4:10640302-10640321 Msa0314720:intron 45.0%
TTCTTGTGTCTATGCCAGCA+TGG - chr2_4:10640329-10640348 Msa0314720:intron 45.0%
GACCTGTAAAAGATGGTCCA+TGG - chr2_4:10640915-10640934 Msa0314720:intron 45.0%
! GGTTCGGTAGATCAGTTTAG+AGG - chr2_4:10640936-10640955 Msa0314720:intron 45.0%
CGGGCGTAAAAGAATACAGT+TGG - chr2_4:10641306-10641325 Msa0314720:intron 45.0%
TACAACATCGCTTGCTCGGT+GGG - chr2_4:10635062-10635081 Msa0314720:three_prime_UTR 50.0%
TTGGAACTGCGGAACTTAGC+AGG - chr2_4:10635944-10635963 Msa0314720:intron 50.0%
TGGAACTGCGGAACTTAGCA+GGG - chr2_4:10635945-10635964 Msa0314720:intron 50.0%
GGCATGGAGAGTAGATCAGA+TGG - chr2_4:10636117-10636136 Msa0314720:CDS 50.0%
GGAGAGTAGATCAGATGGAG+GGG - chr2_4:10636122-10636141 Msa0314720:CDS 50.0%
! AAGCCTTATCCCACCAAGTG+GGG + chr2_4:10636285-10636304 None:intergenic 50.0%
! CAAGCCTTATCCCACCAAGT+GGG + chr2_4:10636286-10636305 None:intergenic 50.0%
!! TCCATAGTTGGTGGAGCTGA+TGG - chr2_4:10636754-10636773 Msa0314720:intron 50.0%
TCCATCAGCTCCACCAACTA+TGG + chr2_4:10636758-10636777 None:intergenic 50.0%
ATGTCCCCGGGATTTAACCT+TGG - chr2_4:10637324-10637343 Msa0314720:intron 50.0%
TGTCCCCGGGATTTAACCTT+GGG - chr2_4:10637325-10637344 Msa0314720:intron 50.0%
ACTCCCAAGGTTAAATCCCG+GGG + chr2_4:10637331-10637350 None:intergenic 50.0%
TCCATTGTTTATGACCCGGG+CGG + chr2_4:10637871-10637890 None:intergenic 50.0%
ATGAATGATACCGCCATGGG+TGG - chr2_4:10639292-10639311 Msa0314720:intron 50.0%
TTCTTCTTCGACACCACCCA+TGG + chr2_4:10639308-10639327 None:intergenic 50.0%
! ATGGGTGGTGTCGAAGAAGA+AGG - chr2_4:10639307-10639326 Msa0314720:intron 50.0%
!! TTTGGGTAGAGGGTGTCAAG+GGG - chr2_4:10639351-10639370 Msa0314720:intron 50.0%
GCGTTCAAAGGGAAAGAGAC+TGG + chr2_4:10639601-10639620 None:intergenic 50.0%
! GTGTTGACGGAGGAAATCGA+TGG + chr2_4:10639715-10639734 None:intergenic 50.0%
!! GGAGGTGAAGAAGGTGTTGA+CGG + chr2_4:10639728-10639747 None:intergenic 50.0%
GAGTGAATCGGAGCGAGATT+GGG + chr2_4:10639749-10639768 None:intergenic 50.0%
ACCTGATTGACGGCGATTGT+CGG + chr2_4:10639827-10639846 None:intergenic 50.0%
CAAGTGGCTGCAAGTTGTGT+TGG + chr2_4:10639986-10640005 None:intergenic 50.0%
ACACAACTTGCAGCCACTTG+TGG - chr2_4:10639986-10640005 Msa0314720:intron 50.0%
CACAACTTGCAGCCACTTGT+GGG - chr2_4:10639987-10640006 Msa0314720:intron 50.0%
TGCAGCCACTTGTGGGAAAA+TGG - chr2_4:10639994-10640013 Msa0314720:intron 50.0%
CCTGAGTAGCTTCGCCTTTA+AGG + chr2_4:10640471-10640490 None:intergenic 50.0%
CCTTAAAGGCGAAGCTACTC+AGG - chr2_4:10640468-10640487 Msa0314720:intron 50.0%
CAGGTCCTAACAATCGGGTT+TGG + chr2_4:10640901-10640920 None:intergenic 50.0%
TACAGGACACGTGCTGAAAG+CGG - chr2_4:10641213-10641232 Msa0314720:intron 50.0%
GGTGGAGGTCTTTCACATGT+CGG - chr2_4:10641234-10641253 Msa0314720:intron 50.0%
GTGGAGGTCTTTCACATGTC+GGG - chr2_4:10641235-10641254 Msa0314720:intron 50.0%
CTACAACATCGCTTGCTCGG+TGG - chr2_4:10635061-10635080 Msa0314720:three_prime_UTR 55.0%
CTCGGTGGGTGCAGTGAAAA+TGG - chr2_4:10635076-10635095 Msa0314720:three_prime_UTR 55.0%
! AGGCTTAGGTGGTTTGGGCA+TGG - chr2_4:10636101-10636120 Msa0314720:CDS 55.0%
TTCATGTAGCCGACCCCACT+TGG - chr2_4:10636269-10636288 Msa0314720:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG + chr2_4:10636281-10636300 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG + chr2_4:10636287-10636306 None:intergenic 55.0%
! CCACTTGGTGGGATAAGGCT+TGG - chr2_4:10636284-10636303 Msa0314720:intron 55.0%
ACCGCCCGGGTCATAAACAA+TGG - chr2_4:10637867-10637886 Msa0314720:intron 55.0%
TTCTTCGACACCACCCATGG+CGG + chr2_4:10639305-10639324 None:intergenic 55.0%
CTCTTTCCCTTTGAACGCGG+CGG - chr2_4:10639603-10639622 Msa0314720:intron 55.0%
GTCAAGGTCAGTGGCTGTGA+CGG + chr2_4:10639659-10639678 None:intergenic 55.0%
GATGGCTAGGTCAAGGTCAG+TGG + chr2_4:10639668-10639687 None:intergenic 55.0%
GAGTAGAAAGGCAGCGGTGA+TGG + chr2_4:10639686-10639705 None:intergenic 55.0%
!! GGTGAAGAAGGTGTTGACGG+AGG + chr2_4:10639725-10639744 None:intergenic 55.0%
GCGAGATTGGGAGGTGAAGA+AGG + chr2_4:10639737-10639756 None:intergenic 55.0%
TGAATCGGAGCGAGATTGGG+AGG + chr2_4:10639746-10639765 None:intergenic 55.0%
GGAGTGAATCGGAGCGAGAT+TGG + chr2_4:10639750-10639769 None:intergenic 55.0%
ATTGTCGGAAGCAAGTCGCG+AGG + chr2_4:10639812-10639831 None:intergenic 55.0%
TCCGACAATCGCCGTCAATC+AGG - chr2_4:10639823-10639842 Msa0314720:CDS 55.0%
CGCCAATCAAGCATGTCCGT+TGG + chr2_4:10640191-10640210 None:intergenic 55.0%
ATGTAGCCGACCCCACTTGG+TGG - chr2_4:10636272-10636291 Msa0314720:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG - chr2_4:10636273-10636292 Msa0314720:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG - chr2_4:10636279-10636298 Msa0314720:intron 60.0%
! CTTTTACCCGTGCTACCGCC+CGG - chr2_4:10637853-10637872 Msa0314720:intron 60.0%
! TTTTACCCGTGCTACCGCCC+GGG - chr2_4:10637854-10637873 Msa0314720:intron 60.0%
TTATGACCCGGGCGGTAGCA+CGG + chr2_4:10637863-10637882 None:intergenic 60.0%
!! TAGAGGGTGTCAAGGGGAGG+AGG - chr2_4:10639357-10639376 Msa0314720:intron 60.0%
GCTGTGACGGCGGTTTCTGT+CGG + chr2_4:10639646-10639665 None:intergenic 60.0%
AAGGTCAGTGGCTGTGACGG+CGG + chr2_4:10639656-10639675 None:intergenic 60.0%
! CAGCGGTGATGGCTAGGTCA+AGG + chr2_4:10639675-10639694 None:intergenic 60.0%
! GAAAGGCAGCGGTGATGGCT+AGG + chr2_4:10639681-10639700 None:intergenic 60.0%
AGGACACGTGCTGAAAGCGG+TGG - chr2_4:10641216-10641235 Msa0314720:intron 60.0%
ACACGTGCTGAAAGCGGTGG+AGG - chr2_4:10641219-10641238 Msa0314720:intron 60.0%
TATGACCCGGGCGGTAGCAC+GGG + chr2_4:10637862-10637881 None:intergenic 65.0%
!! GGGTAGAGGGTGTCAAGGGG+AGG - chr2_4:10639354-10639373 Msa0314720:intron 65.0%
!! AGAGCGCCGCCGCGTTCAAA+GGG + chr2_4:10639612-10639631 None:intergenic 65.0%
!! TAGAGCGCCGCCGCGTTCAA+AGG + chr2_4:10639613-10639632 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 10635020 10641554 10635020 ID=Msa0314720;Name=Msa0314720
chr2_4 mRNA 10635020 10641554 10635020 ID=Msa0314720-mRNA-1;Parent=Msa0314720;Name=Msa0314720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=75|1|1|1|1|1|9|294|204
chr2_4 exon 10635020 10635356 10635020 ID=Msa0314720-mRNA-1:exon:4063;Parent=Msa0314720-mRNA-1
chr2_4 exon 10635947 10636008 10635947 ID=Msa0314720-mRNA-1:exon:4062;Parent=Msa0314720-mRNA-1
chr2_4 exon 10636085 10636193 10636085 ID=Msa0314720-mRNA-1:exon:4061;Parent=Msa0314720-mRNA-1
chr2_4 exon 10638863 10638912 10638863 ID=Msa0314720-mRNA-1:exon:4060;Parent=Msa0314720-mRNA-1
chr2_4 exon 10639002 10639059 10639002 ID=Msa0314720-mRNA-1:exon:4059;Parent=Msa0314720-mRNA-1
chr2_4 exon 10639774 10639851 10639774 ID=Msa0314720-mRNA-1:exon:4058;Parent=Msa0314720-mRNA-1
chr2_4 exon 10641085 10641134 10641085 ID=Msa0314720-mRNA-1:exon:4057;Parent=Msa0314720-mRNA-1
chr2_4 exon 10641243 10641323 10641243 ID=Msa0314720-mRNA-1:exon:4056;Parent=Msa0314720-mRNA-1
chr2_4 exon 10641396 10641554 10641396 ID=Msa0314720-mRNA-1:exon:4055;Parent=Msa0314720-mRNA-1
chr2_4 five_prime_UTR 10641480 10641554 10641480 ID=Msa0314720-mRNA-1:five_prime_utr;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10641396 10641479 10641396 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10641243 10641323 10641243 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10641085 10641134 10641085 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10639774 10639851 10639774 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10639002 10639059 10639002 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10638863 10638912 10638863 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10636085 10636193 10636085 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10635947 10636008 10635947 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 CDS 10635314 10635356 10635314 ID=Msa0314720-mRNA-1:cds;Parent=Msa0314720-mRNA-1
chr2_4 three_prime_UTR 10635020 10635313 10635020 ID=Msa0314720-mRNA-1:three_prime_utr;Parent=Msa0314720-mRNA-1
Gene Sequence

>Msa0314720

ATGGCGTGTGTGCATGACCATAGCTGTGAAGACCATGATTGTTCCTCTGATTGGTCTCTCTACAAACACATTGATCTCGAAAAGGTCTCTGCTTTGAATGAAGCTACTCCTGGTAGTGCTAAATCAGTTTTCAAAGCTTGGGAACACCGTTTGAATACTTCTGGGGAACACTTGGAAAGCAATGAGGGTGATCCTGAGTTAATTGTATTCATTCCATTCACTTCGGACGTAAAGATTAAGAGCATATCCATAGTTGGTGGAGCTGATGGAACAAGCCCTTCCAAGATGAGAGCGTTCATCAATAGAGATGGCATTGACTTTTCAGATGCACAAAGCATGCAAGCCATTCAGGAATGGGATTTGGCTGAGAATTTGCAAGGAGTATTGGAATACCAGACAAGGTATTCTAAATTTCAAGGTGTGGGAAATATTACATTGCACTTTCCTGATAATTTTGGAGGTGACACTACCAAAGTACACTATATTGGCCTTAAAGGCGAAGCTACTCAGTTAAAGAGAGATGTCGTTGCCACTATTGTTTACGAGCTTATGCCGAATCCTTCTGATCACAAGACACGTGCTGAAAGCGGTGGAGGTCTTTCACATGTCGGGTGA

Protein sequence

>Msa0314720

MACVHDHSCEDHDCSSDWSLYKHIDLEKVSALNEATPGSAKSVFKAWEHRLNTSGEHLESNEGDPELIVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWDLAENLQGVLEYQTRYSKFQGVGNITLHFPDNFGGDTTKVHYIGLKGEATQLKRDVVATIVYELMPNPSDHKTRAESGGGLSHVG*