AlfalfaGEDB | Msa0189290

M. sativa cultivar zhongmu-4 / Msa0189290

KEGG: K14294
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013
PFAM: PF09282.13

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189290	XP_003593095.1	95.089	224	5	3	1	224	1	218	1.63e-143	409

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189290	sp\|Q9LPZ4\|PYM1_ARATH	54.795	219	79	5	4	219	3	204	3.43e-66	206

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189290	A2Q490	95.089	224	5	3	1	224	1	218	7.77e-144	409

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0189290	0.812690	3.735194e-51	-8.615850e-47
Msa0006000	Msa0189290	0.806763	7.025567e-50	-8.615850e-47
Msa0016670	Msa0189290	0.815649	8.296150e-52	-8.615850e-47
Msa0017510	Msa0189290	0.848106	7.573099e-60	-8.615850e-47
Msa0028420	Msa0189290	0.846602	1.959598e-59	-8.615850e-47
Msa0028640	Msa0189290	0.812714	3.688869e-51	-8.615850e-47
Msa0031340	Msa0189290	0.830641	2.619892e-55	-8.615850e-47
Msa0032430	Msa0189290	0.808155	3.558810e-50	-8.615850e-47
Msa0034270	Msa0189290	0.809856	1.538956e-50	-8.615850e-47
Msa0044020	Msa0189290	0.819999	8.646712e-53	-8.615850e-47

Showing 1 to 10 of 302 entries

Previous1 2 3 4 5…31Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189290	MtrunA17_Chr2g0278321	95.089	224	5	3	1	224	1	218	1.50e-147	409

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189290	AT1G11400.6	54.795	219	79	5	4	219	3	204	3.48e-67	206
Msa0189290	AT1G11400.3	54.795	219	79	5	4	219	3	204	3.48e-67	206
Msa0189290	AT1G11400.1	54.795	219	79	5	4	219	3	204	3.48e-67	206
Msa0189290	AT1G11400.4	54.795	219	79	5	4	219	3	204	3.48e-67	206
Msa0189290	AT1G11400.2	54.795	219	79	5	4	219	3	204	3.48e-67	206
Msa0189290	AT1G11400.5	54.795	219	79	5	4	219	3	204	3.48e-67	206

Showing 1 to 6 of 6 entries

Previous1Next

Find 60 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTAGAGGATAAAA+AGG	0.311163	2_1:+4697979	Msa0189290:CDS
AAACATACGAGGGCGGGTTT+AGG	0.375038	2_1:-4696045	None:intergenic
AAACCAGTTCGCATCAGAGC+TGG	0.552374	2_1:+4695988	Msa0189290:CDS
AAAGCAAGAAAATGTAATTG+TGG	0.532090	2_1:+4696574	Msa0189290:CDS
AAAGCTGGAAGATTGGCGTA+AGG	0.636462	2_1:+4697952	Msa0189290:CDS
AAAGGAAAAGAAACGCCTTC+AGG	0.428494	2_1:+4696269	Msa0189290:CDS
AAATAGCGACTTCATCTTGA+GGG	0.509940	2_1:-4696017	None:intergenic
AAATCTTGAGCCGACCCAAT+TGG	0.483261	2_1:-4696698	None:intergenic
AAGCAGAAGCAACCAAAAGA+TGG	0.558437	2_1:+4695919	Msa0189290:CDS
AAGGAAATGGCCTCACACAT+TGG	0.617975	2_1:+4696177	Msa0189290:CDS

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTATGAAGAAAACATACGA+GGG	-	chr2_1:4696058-4696077	None:intergenic	30.0%
TTAAATCATGCAGATGAGAA+AGG	+	chr2_1:4696158-4696177	Msa0189290:intron	30.0%
CATGAGCTGAAAATTAATGA+GGG	+	chr2_1:4696336-4696355	Msa0189290:intron	30.0%
TGAAAATTAATGAGGGTCAA+AGG	+	chr2_1:4696343-4696362	Msa0189290:intron	30.0%
GAAAATTAATGAGGGTCAAA+GGG	+	chr2_1:4696344-4696363	Msa0189290:intron	30.0%
CTGCAAAAAGTAAATAACTC+TGG	-	chr2_1:4696507-4696526	None:intergenic	30.0%
CATAAAAAAGAGGATCATCA+AGG	-	chr2_1:4696894-4696913	None:intergenic	30.0%
TAAGTTACTAAAACGTTGTG+TGG	-	chr2_1:4696923-4696942	None:intergenic	30.0%
TTTAGTAACTTAATGCAGCT+AGG	+	chr2_1:4696931-4696950	Msa0189290:intron	30.0%
ATAACATAACCTATACCAGA+AGG	-	chr2_1:4697133-4697152	None:intergenic	30.0%

Showing 1 to 10 of 316 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	4695822	4698234	4695822	ID=Msa0189290;Name=Msa0189290
chr2_1	mRNA	4695822	4698234	4695822	ID=Msa0189290-mRNA-1;Parent=Msa0189290;Name=Msa0189290-mRNA-1;_AED=0.21;_eAED=0.21;_QI=52\|1\|1\|1\|1\|1\|4\|213\|224
chr2_1	exon	4695822	4696059	4695822	ID=Msa0189290-mRNA-1:exon:2093;Parent=Msa0189290-mRNA-1
chr2_1	exon	4696171	4696290	4696171	ID=Msa0189290-mRNA-1:exon:2094;Parent=Msa0189290-mRNA-1
chr2_1	exon	4696527	4696751	4696527	ID=Msa0189290-mRNA-1:exon:2095;Parent=Msa0189290-mRNA-1
chr2_1	exon	4697878	4698234	4697878	ID=Msa0189290-mRNA-1:exon:2096;Parent=Msa0189290-mRNA-1
chr2_1	five_prime_UTR	4695822	4695873	4695822	ID=Msa0189290-mRNA-1:five_prime_utr;Parent=Msa0189290-mRNA-1
chr2_1	CDS	4695874	4696059	4695874	ID=Msa0189290-mRNA-1:cds;Parent=Msa0189290-mRNA-1
chr2_1	CDS	4696171	4696290	4696171	ID=Msa0189290-mRNA-1:cds;Parent=Msa0189290-mRNA-1
chr2_1	CDS	4696527	4696751	4696527	ID=Msa0189290-mRNA-1:cds;Parent=Msa0189290-mRNA-1
chr2_1	CDS	4697878	4698021	4697878	ID=Msa0189290-mRNA-1:cds;Parent=Msa0189290-mRNA-1
chr2_1	three_prime_UTR	4698022	4698234	4698022	ID=Msa0189290-mRNA-1:three_prime_utr;Parent=Msa0189290-mRNA-1

Gene Sequence

>Msa0189290

ATGTCGACGAGTGAGAGAAGCGAAGATCAACAACAAGTGAAGCAGAAGCAGAAGCAACCAAAAGATGGTGAACGGATCCTCGCCCCGACCCGTCGACCCGATGGTACACTTCGAAAACCAGTTCGCATCAGAGCTGGTTATACCCCTCAAGATGAAGTCGCTATTTATCAACCTAAACCCGCCCTCATGAGAAAGGAAATGGCCTCACACATTGGTCCTCCTGGTTATGACCCTCAATTGGATTCTAAACCTAAAACCAAAGCTGTTAAGAGGAATGAAAGAAAAAAGGAAAAGAAACGCCTTCAGGCAAAGGAAACTAACTTAGAAGAACCAACTGTAGTTGAAGATAGTAGAAAGCAAGAAAATGTAATTGTGGAGAATTCTGTTCATTCATTAACTTCTCAGATCAATGAACTAGCTGTTTCTGGAGATACATCCATTGTTACTCCTACCACCAATTCCGTGGAAGCTTCAGAGCCAATTGGGTCGGCTCAAGATTTAGACAAGAGAATTCGAGCATTGAAAAAGAAGATTCGACTTACAGAAGCCCTACAGGAGAAAACTGCAGAGCAAGATTTAAATCCGGAGCAGTTAGAGAAGCTAGCAAAGCTGGAAGATTGGCGTAAGGAGCTAAAACAATTAGAGGATAAAAAGGCTGAAACATTGGCTGTGTGA

Protein sequence

>Msa0189290

MSTSERSEDQQQVKQKQKQPKDGERILAPTRRPDGTLRKPVRIRAGYTPQDEVAIYQPKPALMRKEMASHIGPPGYDPQLDSKPKTKAVKRNERKKEKKRLQAKETNLEEPTVVEDSRKQENVIVENSVHSLTSQINELAVSGDTSIVTPTTNSVEASEPIGSAQDLDKRIRALKKKIRLTEALQEKTAEQDLNPEQLEKLAKLEDWRKELKQLEDKKAETLAV*