Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210190 | XP_003608915.1 | 98.947 | 570 | 6 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210190 | sp|Q9SXC9|MNS5_ARATH | 75.571 | 569 | 131 | 4 | 3 | 567 | 7 | 571 | 0.0 | 900 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210190 | G7JNQ9 | 98.947 | 570 | 6 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1175 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0682090 | Msa1210190 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
| Msa0682140 | Msa1210190 | 0.802925 | 4.450797e-49 | -8.615850e-47 |
| Msa0706400 | Msa1210190 | 0.819609 | 1.061432e-52 | -8.615850e-47 |
| Msa0711790 | Msa1210190 | 0.805353 | 1.391091e-49 | -8.615850e-47 |
| Msa0715410 | Msa1210190 | 0.805494 | 1.299000e-49 | -8.615850e-47 |
| Msa0748070 | Msa1210190 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
| Msa0749440 | Msa1210190 | 0.806259 | 8.972374e-50 | -8.615850e-47 |
| Msa0751850 | Msa1210190 | 0.821210 | 4.557371e-53 | -8.615850e-47 |
| Msa0793140 | Msa1210190 | -0.821621 | 3.663860e-53 | -8.615850e-47 |
| Msa0795720 | Msa1210190 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0830530 | Msa1210190 | 0.804103 | 2.536405e-49 | -8.615850e-47 |
| Msa0831850 | Msa1210190 | 0.802663 | 5.041121e-49 | -8.615850e-47 |
| Msa0833460 | Msa1210190 | 0.804372 | 2.229317e-49 | -8.615850e-47 |
| Msa0226180 | Msa1210190 | 0.821245 | 4.472844e-53 | -8.615850e-47 |
| Msa0392270 | Msa1210190 | 0.800896 | 1.162138e-48 | -8.615850e-47 |
| Msa0468320 | Msa1210190 | 0.800185 | 1.622939e-48 | -8.615850e-47 |
| Msa1021510 | Msa1210190 | 0.806968 | 6.356639e-50 | -8.615850e-47 |
| Msa1105500 | Msa1210190 | 0.800437 | 1.442202e-48 | -8.615850e-47 |
| Msa0241470 | Msa1210190 | 0.800160 | 1.642003e-48 | -8.615850e-47 |
| Msa0268090 | Msa1210190 | 0.813347 | 2.679883e-51 | -8.615850e-47 |
| Msa1210190 | Msa1210910 | 0.885284 | 9.287304e-72 | -8.615850e-47 |
| Msa1210190 | Msa1219810 | 0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa1210190 | Msa1240180 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa1210190 | Msa1259300 | 0.885342 | 8.835422e-72 | -8.615850e-47 |
| Msa1210190 | Msa1267060 | 0.813226 | 2.848840e-51 | -8.615850e-47 |
| Msa1210190 | Msa1286610 | 0.808114 | 3.631254e-50 | -8.615850e-47 |
| Msa1210190 | Msa1371940 | 0.809079 | 2.259147e-50 | -8.615850e-47 |
| Msa1210190 | Msa1401530 | 0.808277 | 3.352442e-50 | -8.615850e-47 |
| Msa1210190 | Msa1435400 | 0.803147 | 4.005034e-49 | -8.615850e-47 |
| Msa1210190 | Msa1440940 | 0.804714 | 1.892281e-49 | -8.615850e-47 |
| Msa0484780 | Msa1210190 | 0.800250 | 1.574306e-48 | -8.615850e-47 |
| Msa0512870 | Msa1210190 | 0.811626 | 6.371846e-51 | -8.615850e-47 |
| Msa0518380 | Msa1210190 | 0.802535 | 5.358238e-49 | -8.615850e-47 |
| Msa0518440 | Msa1210190 | 0.808546 | 2.936731e-50 | -8.615850e-47 |
| Msa0598160 | Msa1210190 | 0.802748 | 4.842984e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210190 | MtrunA17_Chr4g0059431 | 96.404 | 584 | 7 | 1 | 1 | 570 | 1 | 584 | 0.0 | 1162 |
| Msa1210190 | MtrunA17_Chr1g0187981 | 44.906 | 481 | 239 | 4 | 9 | 478 | 16 | 481 | 6.40e-138 | 414 |
| Msa1210190 | MtrunA17_Chr4g0002301 | 30.786 | 471 | 267 | 11 | 38 | 480 | 109 | 548 | 8.39e-54 | 192 |
| Msa1210190 | MtrunA17_Chr0c31g0494131 | 32.715 | 431 | 250 | 10 | 88 | 492 | 15 | 431 | 1.20e-51 | 183 |
| Msa1210190 | MtrunA17_Chr4g0071731 | 34.177 | 316 | 167 | 7 | 38 | 341 | 114 | 400 | 3.52e-38 | 146 |
| Msa1210190 | MtrunA17_Chr2g0286021 | 30.159 | 252 | 155 | 6 | 38 | 283 | 137 | 373 | 9.50e-24 | 105 |
| Msa1210190 | MtrunA17_Chr2g0286021 | 41.667 | 108 | 59 | 3 | 375 | 478 | 520 | 627 | 3.61e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210190 | AT1G27520.1 | 75.571 | 569 | 131 | 4 | 3 | 567 | 7 | 571 | 0.0 | 900 |
| Msa1210190 | AT5G43710.3 | 44.531 | 512 | 250 | 5 | 7 | 501 | 7 | 501 | 2.76e-144 | 428 |
| Msa1210190 | AT5G43710.2 | 44.531 | 512 | 250 | 5 | 7 | 501 | 7 | 501 | 4.46e-144 | 428 |
| Msa1210190 | AT5G43710.1 | 44.531 | 512 | 250 | 5 | 7 | 501 | 7 | 501 | 6.68e-144 | 429 |
| Msa1210190 | AT1G51590.1 | 31.356 | 472 | 270 | 9 | 35 | 480 | 95 | 538 | 6.85e-57 | 200 |
| Msa1210190 | AT1G51590.2 | 31.533 | 463 | 257 | 11 | 47 | 480 | 3 | 434 | 5.11e-55 | 193 |
| Msa1210190 | AT3G21160.1 | 30.101 | 495 | 284 | 11 | 39 | 505 | 100 | 560 | 2.36e-53 | 191 |
| Msa1210190 | AT3G21160.2 | 30.063 | 316 | 178 | 7 | 39 | 341 | 100 | 385 | 4.18e-32 | 128 |
| Msa1210190 | AT1G30000.2 | 26.936 | 297 | 189 | 7 | 22 | 309 | 137 | 414 | 6.39e-25 | 109 |
| Msa1210190 | AT1G30000.2 | 44.444 | 108 | 56 | 3 | 375 | 478 | 533 | 640 | 1.64e-17 | 86.7 |
| Msa1210190 | AT1G30000.1 | 26.936 | 297 | 189 | 7 | 22 | 309 | 117 | 394 | 6.59e-25 | 109 |
| Msa1210190 | AT1G30000.1 | 44.444 | 108 | 56 | 3 | 375 | 478 | 513 | 620 | 1.57e-17 | 86.7 |
Find 132 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCATTGTATTTGTATTT+TGG | 0.116846 | 8_1:+68956921 | None:intergenic |
| CAGAGCTTATTAAAATTATT+TGG | 0.138671 | 8_1:-68954809 | Msa1210190:CDS |
| CTACTCTTGTGTGTAGATTA+AGG | 0.167267 | 8_1:+68953045 | None:intergenic |
| CTAGGTCTGGCTGAAGATTT+AGG | 0.168345 | 8_1:-68955532 | Msa1210190:CDS |
| GCGATATTATGTTATTTAAT+TGG | 0.169402 | 8_1:-68952066 | Msa1210190:three_prime_UTR |
| TGTCTCTAGCCTTGTGATTA+TGG | 0.191008 | 8_1:-68955913 | Msa1210190:intron |
| TCTCTTTGATGATTCATTTA+TGG | 0.203513 | 8_1:-68952795 | Msa1210190:CDS |
| TTACAAGTCTTCAAGCATTT+TGG | 0.214205 | 8_1:-68954213 | Msa1210190:CDS |
| AAACATACATTCCAACTAAT+TGG | 0.226539 | 8_1:-68952697 | Msa1210190:CDS |
| TAAAGCTACTGATTCATATA+TGG | 0.228832 | 8_1:+68954859 | None:intergenic |
| CAGTGCAACATTAGAGTTCT+TGG | 0.232535 | 8_1:-68955631 | Msa1210190:CDS |
| ACTTGTCTCTGCTCATTTAC+TGG | 0.263189 | 8_1:-68955605 | Msa1210190:CDS |
| TTCTACGTGTGGAAGAAATT+TGG | 0.272852 | 8_1:-68954048 | Msa1210190:CDS |
| TTATATGACTCATGCATTTC+CGG | 0.281176 | 8_1:-68956331 | Msa1210190:intron |
| ACGTAAACCAGGTTCTTATT+GGG | 0.283532 | 8_1:-68954107 | Msa1210190:intron |
| TACGTAAACCAGGTTCTTAT+TGG | 0.291437 | 8_1:-68954108 | Msa1210190:intron |
| ATTGCACTGGCTCGATTTGC+TGG | 0.325720 | 8_1:+68952488 | None:intergenic |
| GTCTCTAGCCTTGTGATTAT+GGG | 0.325807 | 8_1:-68955912 | Msa1210190:intron |
| ATTGAACATTCTTCAGGAAT+TGG | 0.326359 | 8_1:-68954755 | Msa1210190:CDS |
| ACCACACTTGACGTGTCAAC+TGG | 0.332248 | 8_1:-68954785 | Msa1210190:CDS |
| GGACAGGAAGAGCAACTTAT+TGG | 0.332779 | 8_1:-68954240 | Msa1210190:CDS |
| TACTCTTGTGTGTAGATTAA+GGG | 0.345949 | 8_1:+68953046 | None:intergenic |
| CAATGGATTGAACATTCTTC+AGG | 0.350257 | 8_1:-68954761 | Msa1210190:CDS |
| ATCCATGTTAAGGTATTTGC+TGG | 0.351938 | 8_1:-68953894 | Msa1210190:intron |
| TTCAGAGTTGTCCAATTAGT+TGG | 0.362431 | 8_1:+68952686 | None:intergenic |
| AGGTTCATTGATTCTTGAAA+TGG | 0.373428 | 8_1:-68954909 | Msa1210190:CDS |
| ACTACAGAAACAAGCACTTC+AGG | 0.379145 | 8_1:-68955020 | Msa1210190:CDS |
| AAAGCTACTGATTCATATAT+GGG | 0.379529 | 8_1:+68954860 | None:intergenic |
| TCAAATTTCCCAGCTCACTT+AGG | 0.392312 | 8_1:+68956197 | None:intergenic |
| CCTGCTATGACTTTAAATTC+AGG | 0.394226 | 8_1:-68952449 | Msa1210190:CDS |
| CAAATTTCCCAGCTCACTTA+GGG | 0.414649 | 8_1:+68956198 | None:intergenic |
| TTTAAGTAGATATTCATAGA+AGG | 0.415298 | 8_1:+68954498 | None:intergenic |
| CACTGATTCCCTAAGTGAGC+TGG | 0.416183 | 8_1:-68956206 | Msa1210190:CDS |
| TAGGTCTGGCTGAAGATTTA+GGG | 0.425603 | 8_1:-68955531 | Msa1210190:CDS |
| GGGAGGCTAAGAACCTCATT+AGG | 0.426885 | 8_1:+68952018 | None:intergenic |
| GCGCACTCCCTTCTCGAATT+CGG | 0.428787 | 8_1:+68955881 | None:intergenic |
| TGTTATTTAATTGGATACAT+TGG | 0.432367 | 8_1:-68952057 | Msa1210190:three_prime_UTR |
| CCGATGTTCGTAGTGATCAT+AGG | 0.434261 | 8_1:-68952397 | Msa1210190:CDS |
| CCAGCGTTCAATACGCCTAC+TGG | 0.437081 | 8_1:-68955496 | Msa1210190:CDS |
| TTTGTATTTATTTCCTAATG+AGG | 0.439776 | 8_1:-68952031 | Msa1210190:three_prime_UTR |
| AATCTACACACAAGAGTAGA+AGG | 0.449627 | 8_1:-68953041 | Msa1210190:CDS |
| CAAGAATGAGCTACTAGGTC+TGG | 0.452439 | 8_1:-68955545 | Msa1210190:CDS |
| CCTATACGACCTGTTCTGTT+CGG | 0.454418 | 8_1:-68957016 | Msa1210190:five_prime_UTR |
| ATGAGTCATATAATTGTCAT+AGG | 0.456794 | 8_1:+68956341 | None:intergenic |
| TGGCTGGTTATTGTGGACTA+TGG | 0.462207 | 8_1:-68952313 | Msa1210190:CDS |
| GGAACAGAACCGAACAGAAC+AGG | 0.463091 | 8_1:+68957007 | None:intergenic |
| ATTTGTTAATTTCAGATCCA+TGG | 0.467153 | 8_1:-68953100 | Msa1210190:intron |
| GTTTGAAAATGTTGTTGAAA+GGG | 0.467221 | 8_1:+68956974 | None:intergenic |
| AAGTGAGCTGGGAAATTTGA+AGG | 0.467826 | 8_1:-68956194 | Msa1210190:intron |
| AATAGTCCTCCTTTCCGAAA+AGG | 0.473341 | 8_1:+68954467 | None:intergenic |
| TTCAAGTTAATCCATGCATA+TGG | 0.478317 | 8_1:+68955469 | None:intergenic |
| TAAATCAGAAAATACCTCTC+TGG | 0.483235 | 8_1:+68954018 | None:intergenic |
| CCGAACAGAACAGGTCGTAT+AGG | 0.483532 | 8_1:+68957016 | None:intergenic |
| CTACAGAAACAAGCACTTCA+GGG | 0.486365 | 8_1:-68955019 | Msa1210190:CDS |
| CTGTCCTCATATCAGCTTCG+TGG | 0.486665 | 8_1:+68954257 | None:intergenic |
| GGTTCATTGATTCTTGAAAT+GGG | 0.488852 | 8_1:-68954908 | Msa1210190:CDS |
| CCCTTCCAGTACTAAGCACT+TGG | 0.490858 | 8_1:-68952736 | Msa1210190:CDS |
| TCATGCCAAGTGCTTAGTAC+TGG | 0.493057 | 8_1:+68952731 | None:intergenic |
| AGAGTGAGAGAAGGAGAAGG+TGG | 0.494774 | 8_1:+68956850 | None:intergenic |
| ATATGCATGGATTAACTTGA+AGG | 0.496506 | 8_1:-68955467 | Msa1210190:intron |
| CGCTAATTGAATCGCTGTCT+AGG | 0.496930 | 8_1:-68956053 | Msa1210190:intron |
| AAAGTACGAGAAGGAAGATA+AGG | 0.497458 | 8_1:+68956873 | None:intergenic |
| AGAAGATCGTGTAGCATGGC+TGG | 0.502154 | 8_1:-68952329 | Msa1210190:CDS |
| TCTTACAAGAATGAGCTACT+AGG | 0.503182 | 8_1:-68955550 | Msa1210190:CDS |
| AGAGGTTTGATTCGCCGACT+TGG | 0.507187 | 8_1:+68956952 | None:intergenic |
| CCTGAATTTAAAGTCATAGC+AGG | 0.518406 | 8_1:+68952449 | None:intergenic |
| CATTCTTCAGGAATTGGAGC+TGG | 0.524928 | 8_1:-68954749 | Msa1210190:intron |
| CGTAAACCAGGTTCTTATTG+GGG | 0.524995 | 8_1:-68954106 | Msa1210190:intron |
| TCTCTCACTCTCAATCCCAT+TGG | 0.525517 | 8_1:-68956838 | Msa1210190:CDS |
| GGTTTGAAAATGTTGTTGAA+AGG | 0.526845 | 8_1:+68956973 | None:intergenic |
| CGTAGGCACACAATTTAACA+AGG | 0.529673 | 8_1:-68952174 | Msa1210190:three_prime_UTR |
| TCTGCATACTCCATAGCTTA+CGG | 0.531709 | 8_1:+68954828 | None:intergenic |
| GCTACACGATCTTCTTCTAC+AGG | 0.531744 | 8_1:+68952337 | None:intergenic |
| AATGTTGACTCAGCAAACTC+AGG | 0.533017 | 8_1:+68953827 | None:intergenic |
| ACTGATTCCCTAAGTGAGCT+GGG | 0.535576 | 8_1:-68956205 | Msa1210190:CDS |
| TCTTCAAAGAAGTTGCTACA+AGG | 0.539072 | 8_1:-68955574 | Msa1210190:CDS |
| TACGAGCTCTCCGTAAGCTA+TGG | 0.539642 | 8_1:-68954838 | Msa1210190:CDS |
| TTTGAAAATGTTGTTGAAAG+GGG | 0.543890 | 8_1:+68956975 | None:intergenic |
| TTGAGAGTGAGAGAAGGAGA+AGG | 0.545431 | 8_1:+68956847 | None:intergenic |
| TGTAGCATGGCTGGTTATTG+TGG | 0.547738 | 8_1:-68952320 | Msa1210190:CDS |
| TTGACGTGTCAACTGGGCAA+TGG | 0.555056 | 8_1:-68954778 | Msa1210190:CDS |
| CCACACTTGACGTGTCAACT+GGG | 0.556230 | 8_1:-68954784 | Msa1210190:CDS |
| TGCAACATTAGAGTTCTTGG+AGG | 0.558005 | 8_1:-68955628 | Msa1210190:CDS |
| ATGTTGACTCAGCAAACTCA+GGG | 0.558716 | 8_1:+68953828 | None:intergenic |
| AGCATTTCAGACACGGTCCC+TGG | 0.561619 | 8_1:-68954408 | Msa1210190:intron |
| GCCAAGTGCTTAGTACTGGA+AGG | 0.562081 | 8_1:+68952735 | None:intergenic |
| GGTACCACGAAGCTGATATG+AGG | 0.564413 | 8_1:-68954261 | Msa1210190:CDS |
| CAGCTACTAACCTGTAGGCC+AGG | 0.565457 | 8_1:+68954190 | None:intergenic |
| CCAAGTGCTTAGTACTGGAA+GGG | 0.567596 | 8_1:+68952736 | None:intergenic |
| CAGTAGGATGAAGCATCTGA+TGG | 0.572630 | 8_1:+68953870 | None:intergenic |
| CAAGTGCTTAGTACTGGAAG+GGG | 0.577672 | 8_1:+68952737 | None:intergenic |
| CAACAATACCGAATTCGAGA+AGG | 0.577874 | 8_1:-68955889 | Msa1210190:CDS |
| ACGAACATCGGAGATGTGGC+AGG | 0.578777 | 8_1:+68952409 | None:intergenic |
| TTAGTTGGAATGTATGTTTG+TGG | 0.580352 | 8_1:+68952701 | None:intergenic |
| CCCAGTTGACACGTCAAGTG+TGG | 0.580623 | 8_1:+68954784 | None:intergenic |
| ATGTGCACAGTATGGAGTAA+TGG | 0.581203 | 8_1:-68955051 | Msa1210190:intron |
| AGAAGGTGGAAAGTACGAGA+AGG | 0.583586 | 8_1:+68956864 | None:intergenic |
| GAAACAAGCACTTCAGGGTG+TGG | 0.588136 | 8_1:-68955014 | Msa1210190:intron |
| TACTTGCAATGACATTGCAC+TGG | 0.588902 | 8_1:+68952475 | None:intergenic |
| CACTACGAACATCGGAGATG+TGG | 0.590249 | 8_1:+68952405 | None:intergenic |
| TGTTGAAAGGGGAAAGAACA+AGG | 0.590588 | 8_1:+68956986 | None:intergenic |
| CACGAAGCTGATATGAGGAC+AGG | 0.593610 | 8_1:-68954256 | Msa1210190:CDS |
| AACTAATTGGACAACTCTGA+AGG | 0.595441 | 8_1:-68952684 | Msa1210190:intron |
| CCTATGATCACTACGAACAT+CGG | 0.597682 | 8_1:+68952397 | None:intergenic |
| TCAGCAAACTCAGGGCGTAA+CGG | 0.601160 | 8_1:+68953836 | None:intergenic |
| AATTACGTATTTACTACTGA+AGG | 0.607071 | 8_1:-68952764 | Msa1210190:CDS |
| CATGCATATGGTAATCCAGT+AGG | 0.607275 | 8_1:+68955481 | None:intergenic |
| AACAATACCGAATTCGAGAA+GGG | 0.609136 | 8_1:-68955888 | Msa1210190:CDS |
| AAGAGAAAATTGTTTAAACA+AGG | 0.609471 | 8_1:+68952276 | None:intergenic |
| ATGGGATTGAGAGTGAGAGA+AGG | 0.610442 | 8_1:+68956841 | None:intergenic |
| TACTTATATCAAGCTACCAA+AGG | 0.613732 | 8_1:-68953803 | Msa1210190:intron |
| TAGAAGAAGATCGTGTAGCA+TGG | 0.617522 | 8_1:-68952333 | Msa1210190:CDS |
| TCATATAATTGTCATAGGCA+TGG | 0.618430 | 8_1:+68956346 | None:intergenic |
| GCAGAGCCATTGTAGTCTTG+CGG | 0.619348 | 8_1:+68956081 | None:intergenic |
| AATTCGAGAAGGGAGTGCGC+TGG | 0.622257 | 8_1:-68955878 | Msa1210190:CDS |
| CTACTGGATTACCATATGCA+TGG | 0.624896 | 8_1:-68955480 | Msa1210190:CDS |
| TGTTTGACTGATGACGATTG+TGG | 0.626446 | 8_1:-68952374 | Msa1210190:CDS |
| GATCCATGGTATATTGAAGT+CGG | 0.626705 | 8_1:-68953086 | Msa1210190:CDS |
| CATGTCAAATAGTAGCGACA+AGG | 0.627969 | 8_1:+68956899 | None:intergenic |
| AGGGTTTAGAGTAAATTCGT+AGG | 0.628504 | 8_1:-68952191 | Msa1210190:three_prime_UTR |
| GTGCAGAAGCATTTCAGACA+CGG | 0.630456 | 8_1:-68954415 | Msa1210190:CDS |
| GGTGCTTTATCAAAACTGAC+TGG | 0.643205 | 8_1:-68954887 | Msa1210190:CDS |
| TACACACAAGAGTAGAAGGT+GGG | 0.647520 | 8_1:-68953037 | Msa1210190:CDS |
| TCGCCGACTTCAATATACCA+TGG | 0.648606 | 8_1:+68953083 | None:intergenic |
| TCCACACGTAGAAGAACTCA+CGG | 0.649793 | 8_1:+68954058 | None:intergenic |
| CCAGTAGGCGTATTGAACGC+TGG | 0.652163 | 8_1:+68955496 | None:intergenic |
| AAGCTACTGATTCATATATG+GGG | 0.656627 | 8_1:+68954861 | None:intergenic |
| TATTGTTGCCCATAATCACA+AGG | 0.682586 | 8_1:+68955904 | None:intergenic |
| AATTTGGAGTGCTGCCAGAG+AGG | 0.686632 | 8_1:-68954032 | Msa1210190:intron |
| CTACACACAAGAGTAGAAGG+TGG | 0.694248 | 8_1:-68953038 | Msa1210190:CDS |
| AATTAAATAACATAATATCG+CGG | 0.697198 | 8_1:+68952068 | None:intergenic |
| CGTTTGCCGCAAGACTACAA+TGG | 0.701397 | 8_1:-68956087 | Msa1210190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAGTTTTTAAATATTAC+AGG | - | chr8_1:68956885-68956904 | Msa1210190:CDS | 10.0% |
| !!! | TAAAGTTTTTAAATATTACA+GGG | - | chr8_1:68956886-68956905 | Msa1210190:CDS | 10.0% |
| !! | CAAAATTTGGATTAATTTAA+AGG | + | chr8_1:68952388-68952407 | None:intergenic | 15.0% |
| !!! | CTTTAAATTAATCCAAATTT+TGG | - | chr8_1:68952386-68952405 | Msa1210190:CDS | 15.0% |
| !! | ATAAAAAGTTTACAAAATCT+CGG | + | chr8_1:68953678-68953697 | None:intergenic | 15.0% |
| !!! | TATTTTGAATGTTTAACAAT+AGG | - | chr8_1:68953728-68953747 | Msa1210190:intron | 15.0% |
| !!! | TTATTTTCCTGAATTATTTT+AGG | - | chr8_1:68954567-68954586 | Msa1210190:intron | 15.0% |
| !!! | AAAAGATTAGAAATTTTGTT+TGG | - | chr8_1:68954940-68954959 | Msa1210190:intron | 15.0% |
| !!! | AATTTAATGTCATTAGATTT+TGG | + | chr8_1:68955448-68955467 | None:intergenic | 15.0% |
| !!! | ATTTTTTATGTCAAAATTCT+AGG | + | chr8_1:68955562-68955581 | None:intergenic | 15.0% |
| !!! | ATTTTTTATGTCAAAATTCT+AGG | + | chr8_1:68955562-68955581 | None:intergenic | 15.0% |
| !! | AATTAAATAACATAATATCG+CGG | + | chr8_1:68957031-68957050 | None:intergenic | 15.0% |
| !!! | GAATCATTGTATTTGTATTT+TGG | + | chr8_1:68952178-68952197 | None:intergenic | 20.0% |
| !! | AATTTAAAGGAGCTAAAAAT+TGG | + | chr8_1:68952375-68952394 | None:intergenic | 20.0% |
| !!! | AATTAATCCAAATTTTGGAT+CGG | - | chr8_1:68952391-68952410 | Msa1210190:CDS | 20.0% |
| !! | GTTATCAATTATGAAAAATG+AGG | - | chr8_1:68952418-68952437 | Msa1210190:CDS | 20.0% |
| !! | ACATACTATTACTCAAAATT+TGG | + | chr8_1:68952665-68952684 | None:intergenic | 20.0% |
| !!! | TTTTTTTTACTGTTGTTTGT+AGG | - | chr8_1:68952722-68952741 | Msa1210190:CDS | 20.0% |
| !! | AACAACAAATAATAACTAAC+CGG | + | chr8_1:68952787-68952806 | None:intergenic | 20.0% |
| !!! | GTAAACTTTTTATATAGATG+TGG | - | chr8_1:68953685-68953704 | Msa1210190:intron | 20.0% |
| !! | ATAACAATGCAATCATATAT+GGG | - | chr8_1:68953850-68953869 | Msa1210190:CDS | 20.0% |
| !!! | TATATATCATTCTAAAAGGA+TGG | + | chr8_1:68954002-68954021 | None:intergenic | 20.0% |
| !! | GAGTTATATATCATTCTAAA+AGG | + | chr8_1:68954006-68954025 | None:intergenic | 20.0% |
| !!! | CATAATATTTTGTATTGGTA+TGG | + | chr8_1:68954028-68954047 | None:intergenic | 20.0% |
| !! | CAGAGCTTATTAAAATTATT+TGG | - | chr8_1:68954287-68954306 | Msa1210190:intron | 20.0% |
| !! | TTTAAGTAGATATTCATAGA+AGG | + | chr8_1:68954601-68954620 | None:intergenic | 20.0% |
| !! | AGTCAATTTCTTTATAACTT+CGG | - | chr8_1:68955100-68955119 | Msa1210190:intron | 20.0% |
| !! | AAAACATAATGATAGAATGA+CGG | + | chr8_1:68955141-68955160 | None:intergenic | 20.0% |
| !! | AAAAAAATCTGACCATTAAT+TGG | + | chr8_1:68955869-68955888 | None:intergenic | 20.0% |
| !!! | TTTAATTTCTTAGATGAAAG+AGG | + | chr8_1:68956175-68956194 | None:intergenic | 20.0% |
| !! | AAGAGAAAATTGTTTAAACA+AGG | + | chr8_1:68956823-68956842 | None:intergenic | 20.0% |
| !!! | GTTTAAACAATTTTCTCTTT+AGG | - | chr8_1:68956824-68956843 | Msa1210190:CDS | 20.0% |
| !!! | ACAATTTAACAAGGTTTTTT+AGG | - | chr8_1:68956931-68956950 | Msa1210190:five_prime_UTR | 20.0% |
| !!! | GCGATATTATGTTATTTAAT+TGG | - | chr8_1:68957030-68957049 | Msa1210190:five_prime_UTR | 20.0% |
| !!! | TGTTATTTAATTGGATACAT+TGG | - | chr8_1:68957039-68957058 | Msa1210190:five_prime_UTR | 20.0% |
| !! | TTTGTATTTATTTCCTAATG+AGG | - | chr8_1:68957065-68957084 | Msa1210190:five_prime_UTR | 20.0% |
| ! | TTTGAAAATGTTGTTGAAAG+GGG | + | chr8_1:68952124-68952143 | None:intergenic | 25.0% |
| ! | GTTTGAAAATGTTGTTGAAA+GGG | + | chr8_1:68952125-68952144 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTGAAAGACCAAT+GGG | + | chr8_1:68952276-68952295 | None:intergenic | 25.0% |
| ! | TAAAAATTGGTGTAGGAAAT+AGG | + | chr8_1:68952362-68952381 | None:intergenic | 25.0% |
| !!! | TGTGTTGATTTTTCAATGTA+TGG | + | chr8_1:68952515-68952534 | None:intergenic | 25.0% |
| ! | TACATTGAAAAATCAACACA+CGG | - | chr8_1:68952515-68952534 | Msa1210190:intron | 25.0% |
| ! | ATTTCTCTAACCTTTGTATT+AGG | - | chr8_1:68952572-68952591 | Msa1210190:intron | 25.0% |
| !! | CCAACATTTGCTTATATTTT+AGG | + | chr8_1:68952618-68952637 | None:intergenic | 25.0% |
| ! | CCTAAAATATAAGCAAATGT+TGG | - | chr8_1:68952615-68952634 | Msa1210190:intron | 25.0% |
| ! | ATGAGTCATATAATTGTCAT+AGG | + | chr8_1:68952758-68952777 | None:intergenic | 25.0% |
| !!! | AGTTCTGTTTTTATTCAGTT+CGG | - | chr8_1:68953104-68953123 | Msa1210190:intron | 25.0% |
| ! | TTACCTCAAAAAGATTAATG+CGG | + | chr8_1:68953276-68953295 | None:intergenic | 25.0% |
| !! | TTTGAGGTAAATACTTGATT+TGG | - | chr8_1:68953286-68953305 | Msa1210190:intron | 25.0% |
| ! | GTATAAATTCTTTCTGCATA+TGG | - | chr8_1:68953817-68953836 | Msa1210190:CDS | 25.0% |
| ! | GATAACAATGCAATCATATA+TGG | - | chr8_1:68953849-68953868 | Msa1210190:CDS | 25.0% |
| !! | GTGCACATAATATTTTGTAT+TGG | + | chr8_1:68954033-68954052 | None:intergenic | 25.0% |
| ! | AAAATATTATGTGCACAGTA+TGG | - | chr8_1:68954037-68954056 | Msa1210190:CDS | 25.0% |
| !!! | ACTCTAGTCTTAAAATACTA+AGG | + | chr8_1:68954119-68954138 | None:intergenic | 25.0% |
| ! | TATAGTAAAACTGTTATGTC+TGG | - | chr8_1:68954138-68954157 | Msa1210190:intron | 25.0% |
| !!! | AAAGCTACTGATTCATATAT+GGG | + | chr8_1:68954239-68954258 | None:intergenic | 25.0% |
| !!! | TAAAGCTACTGATTCATATA+TGG | + | chr8_1:68954240-68954259 | None:intergenic | 25.0% |
| ! | CAGTTCATTTGTAAATTCAA+TGG | + | chr8_1:68954450-68954469 | None:intergenic | 25.0% |
| ! | GAACTTGATGTTTATTATGT+TGG | - | chr8_1:68954542-68954561 | Msa1210190:intron | 25.0% |
| ! | ATCTACACCTAAAATAATTC+AGG | + | chr8_1:68954577-68954596 | None:intergenic | 25.0% |
| ! | TCAATCATAAATCCATGTTA+AGG | - | chr8_1:68955192-68955211 | Msa1210190:intron | 25.0% |
| !!! | AACGGATAATATTTTTCAGT+AGG | + | chr8_1:68955245-68955264 | None:intergenic | 25.0% |
| ! | AATGCCACAATATCAATAAA+CGG | + | chr8_1:68955347-68955366 | None:intergenic | 25.0% |
| ! | ATTGGTATAACAAATTGAAC+AGG | + | chr8_1:68955536-68955555 | None:intergenic | 25.0% |
| ! | TGTCAAAATTCTAGGTTAAT+TGG | + | chr8_1:68955554-68955573 | None:intergenic | 25.0% |
| !!! | CAACTGATTTTTCCAATTAA+TGG | - | chr8_1:68955854-68955873 | Msa1210190:CDS | 25.0% |
| !! | ATTTGTTAATTTCAGATCCA+TGG | - | chr8_1:68955996-68956015 | Msa1210190:intron | 25.0% |
| !! | TCTCTTTGATGATTCATTTA+TGG | - | chr8_1:68956301-68956320 | Msa1210190:intron | 25.0% |
| ! | AATTACGTATTTACTACTGA+AGG | - | chr8_1:68956332-68956351 | Msa1210190:CDS | 25.0% |
| ! | AAACATACATTCCAACTAAT+TGG | - | chr8_1:68956399-68956418 | Msa1210190:intron | 25.0% |
| ! | AGATAATAGTAAGTAGTGTA+CGG | - | chr8_1:68956488-68956507 | Msa1210190:intron | 25.0% |
| GGTTTGAAAATGTTGTTGAA+AGG | + | chr8_1:68952126-68952145 | None:intergenic | 30.0% | |
| ! | ACAACATTTTCAAACCAAGT+CGG | - | chr8_1:68952130-68952149 | Msa1210190:three_prime_UTR | 30.0% |
| !! | TGTATTTTGGATGTAGAAAG+AGG | + | chr8_1:68952165-68952184 | None:intergenic | 30.0% |
| !!! | GTTTTTTCTTGAAAGACCAA+TGG | + | chr8_1:68952277-68952296 | None:intergenic | 30.0% |
| !! | TATTACGAACTTTTTCTCTG+AGG | + | chr8_1:68952301-68952320 | None:intergenic | 30.0% |
| AGGATCAACGAATTGAAATA+TGG | + | chr8_1:68952342-68952361 | None:intergenic | 30.0% | |
| AACTTAACCGATCCAAAATT+TGG | + | chr8_1:68952401-68952420 | None:intergenic | 30.0% | |
| ATGGAGATTCACAAAATTCA+CGG | + | chr8_1:68952496-68952515 | None:intergenic | 30.0% | |
| ! | TAGTAGTTAGCCTAATACAA+AGG | + | chr8_1:68952585-68952604 | None:intergenic | 30.0% |
| !! | CATTTGCTTATATTTTAGGC+AGG | + | chr8_1:68952614-68952633 | None:intergenic | 30.0% |
| TCATATAATTGTCATAGGCA+TGG | + | chr8_1:68952753-68952772 | None:intergenic | 30.0% | |
| TTATATGACTCATGCATTTC+CGG | - | chr8_1:68952765-68952784 | Msa1210190:CDS | 30.0% | |
| GTTCAAGCTGCAATAATAAA+CGG | + | chr8_1:68952990-68953009 | None:intergenic | 30.0% | |
| TACCTCAAAAAGATTAATGC+GGG | + | chr8_1:68953275-68953294 | None:intergenic | 30.0% | |
| !! | TGTTTTACTTTTCGCTTGAT+TGG | - | chr8_1:68953428-68953447 | Msa1210190:intron | 30.0% |
| ! | TTCAAGTTAATCCATGCATA+TGG | + | chr8_1:68953630-68953649 | None:intergenic | 30.0% |
| ! | ATATGCATGGATTAACTTGA+AGG | - | chr8_1:68953629-68953648 | Msa1210190:intron | 30.0% |
| ATAAATTTCCAACTTTGTGC+AGG | - | chr8_1:68954167-68954186 | Msa1210190:intron | 30.0% | |
| !! | AGGTTCATTGATTCTTGAAA+TGG | - | chr8_1:68954187-68954206 | Msa1210190:intron | 30.0% |
| !! | GGTTCATTGATTCTTGAAAT+GGG | - | chr8_1:68954188-68954207 | Msa1210190:intron | 30.0% |
| !! | AAGCTACTGATTCATATATG+GGG | + | chr8_1:68954238-68954257 | None:intergenic | 30.0% |
| ATTGAACATTCTTCAGGAAT+TGG | - | chr8_1:68954341-68954360 | Msa1210190:intron | 30.0% | |
| ACAATAAGTATGCAGTTGAT+AGG | + | chr8_1:68954427-68954446 | None:intergenic | 30.0% | |
| ! | CTTAAAGCTCATATCCTTTT+CGG | - | chr8_1:68954615-68954634 | Msa1210190:intron | 30.0% |
| ! | GTTTTACTAGTATGCTTATC+TGG | - | chr8_1:68954741-68954760 | Msa1210190:intron | 30.0% |
| ! | TTACAAGTCTTCAAGCATTT+TGG | - | chr8_1:68954883-68954902 | Msa1210190:CDS | 30.0% |
| TAAATCAGAAAATACCTCTC+TGG | + | chr8_1:68955081-68955100 | None:intergenic | 30.0% | |
| TACTTATATCAAGCTACCAA+AGG | - | chr8_1:68955293-68955312 | Msa1210190:intron | 30.0% | |
| GTTTCCGTTTATTGATATTG+TGG | - | chr8_1:68955340-68955359 | Msa1210190:intron | 30.0% | |
| GTTGGTATAACAAATTGAAC+AGG | + | chr8_1:68955640-68955659 | None:intergenic | 30.0% | |
| TGTCAAAATTCTAGGTTAGT+TGG | + | chr8_1:68955658-68955677 | None:intergenic | 30.0% | |
| ! | TATTTGACTCATTTGAAGTG+AGG | - | chr8_1:68955768-68955787 | Msa1210190:intron | 30.0% |
| TACTCTTGTGTGTAGATTAA+GGG | + | chr8_1:68956053-68956072 | None:intergenic | 30.0% | |
| TTTCTTAGATGAAAGAGGAA+AGG | + | chr8_1:68956170-68956189 | None:intergenic | 30.0% | |
| TTAGTTGGAATGTATGTTTG+TGG | + | chr8_1:68956398-68956417 | None:intergenic | 30.0% | |
| TGCTTTGATAGAAAAAGAGA+TGG | - | chr8_1:68956976-68956995 | Msa1210190:five_prime_UTR | 30.0% | |
| GCTTTGATAGAAAAAGAGAT+GGG | - | chr8_1:68956977-68956996 | Msa1210190:five_prime_UTR | 30.0% | |
| AAAGTACGAGAAGGAAGATA+AGG | + | chr8_1:68952226-68952245 | None:intergenic | 35.0% | |
| AAGGAGCTAAAAATTGGTGT+AGG | + | chr8_1:68952369-68952388 | None:intergenic | 35.0% | |
| ! | TCAGTGAAAGTTTTTGTGAG+AGG | + | chr8_1:68952876-68952895 | None:intergenic | 35.0% |
| TTGAACACATCTTGTTGAAC+TGG | - | chr8_1:68953138-68953157 | Msa1210190:intron | 35.0% | |
| GAACTGGAAACTGATACATA+TGG | - | chr8_1:68953154-68953173 | Msa1210190:intron | 35.0% | |
| TATTGTTGCCCATAATCACA+AGG | + | chr8_1:68953195-68953214 | None:intergenic | 35.0% | |
| AACAATACCGAATTCGAGAA+GGG | - | chr8_1:68953208-68953227 | Msa1210190:intron | 35.0% | |
| ! | CTTTTCGCTTGATTGGAATT+TGG | - | chr8_1:68953435-68953454 | Msa1210190:intron | 35.0% |
| TCTTCAAAGAAGTTGCTACA+AGG | - | chr8_1:68953522-68953541 | Msa1210190:intron | 35.0% | |
| TCTTACAAGAATGAGCTACT+AGG | - | chr8_1:68953546-68953565 | Msa1210190:intron | 35.0% | |
| AATGAGAACTCCTAACAGTT+GGG | + | chr8_1:68953763-68953782 | None:intergenic | 35.0% | |
| TAATGAGAACTCCTAACAGT+TGG | + | chr8_1:68953764-68953783 | None:intergenic | 35.0% | |
| ! | TATTTGAACCATGTTGCTTC+AGG | - | chr8_1:68953921-68953940 | Msa1210190:intron | 35.0% |
| !! | CAATGGATTGAACATTCTTC+AGG | - | chr8_1:68954335-68954354 | Msa1210190:intron | 35.0% |
| TGTCTATCATTCAGTTCATG+TGG | - | chr8_1:68954393-68954412 | Msa1210190:intron | 35.0% | |
| GCATTATTGTCAACAGCAAA+AGG | + | chr8_1:68954475-68954494 | None:intergenic | 35.0% | |
| TCTGATCAACAGTTATAACC+AGG | - | chr8_1:68954795-68954814 | Msa1210190:CDS | 35.0% | |
| CTGTGTTACATCAATTAACC+TGG | + | chr8_1:68954816-68954835 | None:intergenic | 35.0% | |
| CAGGTTAATTGATGTAACAC+AGG | - | chr8_1:68954814-68954833 | Msa1210190:CDS | 35.0% | |
| TACGTAAACCAGGTTCTTAT+TGG | - | chr8_1:68954988-68955007 | Msa1210190:intron | 35.0% | |
| ACGTAAACCAGGTTCTTATT+GGG | - | chr8_1:68954989-68955008 | Msa1210190:intron | 35.0% | |
| ATATATCCCCAATAAGAACC+TGG | + | chr8_1:68954999-68955018 | None:intergenic | 35.0% | |
| TTCTACGTGTGGAAGAAATT+TGG | - | chr8_1:68955048-68955067 | Msa1210190:intron | 35.0% | |
| ! | ATCCATGTTAAGGTATTTGC+TGG | - | chr8_1:68955202-68955221 | Msa1210190:intron | 35.0% |
| TATAACAAATTGAACAGGCC+TGG | + | chr8_1:68955531-68955550 | None:intergenic | 35.0% | |
| CTTAGTGTTCTGTATCAACA+TGG | - | chr8_1:68955591-68955610 | Msa1210190:CDS | 35.0% | |
| AAGCAATGAGTGCACTTTAT+CGG | + | chr8_1:68955899-68955918 | None:intergenic | 35.0% | |
| GATCCATGGTATATTGAAGT+CGG | - | chr8_1:68956010-68956029 | Msa1210190:intron | 35.0% | |
| CTACTCTTGTGTGTAGATTA+AGG | + | chr8_1:68956054-68956073 | None:intergenic | 35.0% | |
| AATCTACACACAAGAGTAGA+AGG | - | chr8_1:68956055-68956074 | Msa1210190:CDS | 35.0% | |
| GTTCAGTAATGATATGAGTG+AGG | + | chr8_1:68956223-68956242 | None:intergenic | 35.0% | |
| TTCAGAGTTGTCCAATTAGT+TGG | + | chr8_1:68956413-68956432 | None:intergenic | 35.0% | |
| AACTAATTGGACAACTCTGA+AGG | - | chr8_1:68956412-68956431 | Msa1210190:intron | 35.0% | |
| !!! | TCATGCGTTTTAAGTTCATG+TGG | + | chr8_1:68956545-68956564 | None:intergenic | 35.0% |
| ! | CCTGAATTTAAAGTCATAGC+AGG | + | chr8_1:68956650-68956669 | None:intergenic | 35.0% |
| CCTGCTATGACTTTAAATTC+AGG | - | chr8_1:68956647-68956666 | Msa1210190:intron | 35.0% | |
| ! | AGGGTTTAGAGTAAATTCGT+AGG | - | chr8_1:68956905-68956924 | Msa1210190:CDS | 35.0% |
| TGTTGAAAGGGGAAAGAACA+AGG | + | chr8_1:68952113-68952132 | None:intergenic | 40.0% | |
| CATGTCAAATAGTAGCGACA+AGG | + | chr8_1:68952200-68952219 | None:intergenic | 40.0% | |
| ! | ACACACGGAGATTTTGTTGA+AGG | - | chr8_1:68952530-68952549 | Msa1210190:intron | 40.0% |
| TCAAAGAGAGCTGATGTGTT+TGG | - | chr8_1:68952638-68952657 | Msa1210190:intron | 40.0% | |
| CAAATTTCCCAGCTCACTTA+GGG | + | chr8_1:68952901-68952920 | None:intergenic | 40.0% | |
| TCAAATTTCCCAGCTCACTT+AGG | + | chr8_1:68952902-68952921 | None:intergenic | 40.0% | |
| AAGTGAGCTGGGAAATTTGA+AGG | - | chr8_1:68952902-68952921 | Msa1210190:intron | 40.0% | |
| !! | TGTCTCTAGCCTTGTGATTA+TGG | - | chr8_1:68953183-68953202 | Msa1210190:intron | 40.0% |
| !! | GTCTCTAGCCTTGTGATTAT+GGG | - | chr8_1:68953184-68953203 | Msa1210190:intron | 40.0% |
| CAACAATACCGAATTCGAGA+AGG | - | chr8_1:68953207-68953226 | Msa1210190:intron | 40.0% | |
| ! | TGCCCGCATTAATCTTTTTG+AGG | - | chr8_1:68953270-68953289 | Msa1210190:intron | 40.0% |
| ACATCAGACTACTCGAAATG+TGG | - | chr8_1:68953335-68953354 | Msa1210190:intron | 40.0% | |
| CAGTGCAACATTAGAGTTCT+TGG | - | chr8_1:68953465-68953484 | Msa1210190:intron | 40.0% | |
| TGCAACATTAGAGTTCTTGG+AGG | - | chr8_1:68953468-68953487 | Msa1210190:intron | 40.0% | |
| ACTTGTCTCTGCTCATTTAC+TGG | - | chr8_1:68953491-68953510 | Msa1210190:intron | 40.0% | |
| TAGGTCTGGCTGAAGATTTA+GGG | - | chr8_1:68953565-68953584 | Msa1210190:intron | 40.0% | |
| CATGCATATGGTAATCCAGT+AGG | + | chr8_1:68953618-68953637 | None:intergenic | 40.0% | |
| CTACTGGATTACCATATGCA+TGG | - | chr8_1:68953616-68953635 | Msa1210190:intron | 40.0% | |
| GTAATGATACCCCAACTGTT+AGG | - | chr8_1:68953750-68953769 | Msa1210190:intron | 40.0% | |
| ATGAGAACTCCTAACAGTTG+GGG | + | chr8_1:68953762-68953781 | None:intergenic | 40.0% | |
| CCTAAAATCCTGAAGCAACA+TGG | + | chr8_1:68953932-68953951 | None:intergenic | 40.0% | |
| !! | CCATGTTGCTTCAGGATTTT+AGG | - | chr8_1:68953929-68953948 | Msa1210190:intron | 40.0% |
| ATGTGCACAGTATGGAGTAA+TGG | - | chr8_1:68954045-68954064 | Msa1210190:CDS | 40.0% | |
| ACTACAGAAACAAGCACTTC+AGG | - | chr8_1:68954076-68954095 | Msa1210190:CDS | 40.0% | |
| CTACAGAAACAAGCACTTCA+GGG | - | chr8_1:68954077-68954096 | Msa1210190:CDS | 40.0% | |
| TCAATGAACCTGCACAAAGT+TGG | + | chr8_1:68954178-68954197 | None:intergenic | 40.0% | |
| GGTGCTTTATCAAAACTGAC+TGG | - | chr8_1:68954209-68954228 | Msa1210190:CDS | 40.0% | |
| TCTGCATACTCCATAGCTTA+CGG | + | chr8_1:68954271-68954290 | None:intergenic | 40.0% | |
| AAACATCAAGTTCAGCTCGT+CGG | + | chr8_1:68954535-68954554 | None:intergenic | 40.0% | |
| ! | AGCTCATATCCTTTTCGGAA+AGG | - | chr8_1:68954620-68954639 | Msa1210190:intron | 40.0% |
| ! | TCATATCCTTTTCGGAAAGG+AGG | - | chr8_1:68954623-68954642 | Msa1210190:intron | 40.0% |
| AATAGTCCTCCTTTCCGAAA+AGG | + | chr8_1:68954632-68954651 | None:intergenic | 40.0% | |
| ! | TTTTCGGAAAGGAGGACTAT+TGG | - | chr8_1:68954631-68954650 | Msa1210190:intron | 40.0% |
| TTGCAGTTAAAGTGGTACCA+GGG | + | chr8_1:68954708-68954727 | None:intergenic | 40.0% | |
| CGTGTTTCTTGCAGTTAAAG+TGG | + | chr8_1:68954716-68954735 | None:intergenic | 40.0% | |
| GTCTATGACTTACGTAAACC+AGG | - | chr8_1:68954978-68954997 | Msa1210190:intron | 40.0% | |
| CGTAAACCAGGTTCTTATTG+GGG | - | chr8_1:68954990-68955009 | Msa1210190:intron | 40.0% | |
| GTCCAGCAAATACCTTAACA+TGG | + | chr8_1:68955207-68955226 | None:intergenic | 40.0% | |
| !! | ATGTTGACTCAGCAAACTCA+GGG | + | chr8_1:68955271-68955290 | None:intergenic | 40.0% |
| !! | AATGTTGACTCAGCAAACTC+AGG | + | chr8_1:68955272-68955291 | None:intergenic | 40.0% |
| TAGACAAACTGTCAGACCTT+TGG | + | chr8_1:68955312-68955331 | None:intergenic | 40.0% | |
| TAGTTAAATAAGCTGCAGCC+AGG | - | chr8_1:68955510-68955529 | Msa1210190:CDS | 40.0% | |
| ! | TTGACTCATTTGAAGTGAGG+AGG | - | chr8_1:68955771-68955790 | Msa1210190:intron | 40.0% |
| TACACACAAGAGTAGAAGGT+GGG | - | chr8_1:68956059-68956078 | Msa1210190:CDS | 40.0% | |
| TACTTGCAATGACATTGCAC+TGG | + | chr8_1:68956624-68956643 | None:intergenic | 40.0% | |
| CCTATGATCACTACGAACAT+CGG | + | chr8_1:68956702-68956721 | None:intergenic | 40.0% | |
| ! | TGTTTGACTGATGACGATTG+TGG | - | chr8_1:68956722-68956741 | Msa1210190:intron | 40.0% |
| TAGAAGAAGATCGTGTAGCA+TGG | - | chr8_1:68956763-68956782 | Msa1210190:intron | 40.0% | |
| CGTAGGCACACAATTTAACA+AGG | - | chr8_1:68956922-68956941 | Msa1210190:exon | 40.0% | |
| GAGATGGGAGAAAAAGAAAG+AGG | - | chr8_1:68956992-68957011 | Msa1210190:five_prime_UTR | 40.0% | |
| CCTATACGACCTGTTCTGTT+CGG | - | chr8_1:68952080-68952099 | Msa1210190:three_prime_UTR | 45.0% | |
| ! | AGAAGGTGGAAAGTACGAGA+AGG | + | chr8_1:68952235-68952254 | None:intergenic | 45.0% |
| TTGAGAGTGAGAGAAGGAGA+AGG | + | chr8_1:68952252-68952271 | None:intergenic | 45.0% | |
| ATGGGATTGAGAGTGAGAGA+AGG | + | chr8_1:68952258-68952277 | None:intergenic | 45.0% | |
| TCTCTCACTCTCAATCCCAT+TGG | - | chr8_1:68952258-68952277 | Msa1210190:three_prime_UTR | 45.0% | |
| ! | ACTGATTCCCTAAGTGAGCT+GGG | - | chr8_1:68952891-68952910 | Msa1210190:intron | 45.0% |
| CGCTAATTGAATCGCTGTCT+AGG | - | chr8_1:68953043-68953062 | Msa1210190:CDS | 45.0% | |
| CAAGAATGAGCTACTAGGTC+TGG | - | chr8_1:68953551-68953570 | Msa1210190:intron | 45.0% | |
| CTAGGTCTGGCTGAAGATTT+AGG | - | chr8_1:68953564-68953583 | Msa1210190:intron | 45.0% | |
| CATTCTTCAGGAATTGGAGC+TGG | - | chr8_1:68954347-68954366 | Msa1210190:intron | 45.0% | |
| !! | GTGCAGAAGCATTTCAGACA+CGG | - | chr8_1:68954681-68954700 | Msa1210190:intron | 45.0% |
| CTTGCAGTTAAAGTGGTACC+AGG | + | chr8_1:68954709-68954728 | None:intergenic | 45.0% | |
| GGACAGGAAGAGCAACTTAT+TGG | - | chr8_1:68954856-68954875 | Msa1210190:CDS | 45.0% | |
| !! | AGTCTTCAAGCATTTTGGCC+TGG | - | chr8_1:68954888-68954907 | Msa1210190:CDS | 45.0% |
| AAGTCCAGCTACTAACCTGT+AGG | + | chr8_1:68954914-68954933 | None:intergenic | 45.0% | |
| TCCACACGTAGAAGAACTCA+CGG | + | chr8_1:68955041-68955060 | None:intergenic | 45.0% | |
| ! | CAGTAGGATGAAGCATCTGA+TGG | + | chr8_1:68955229-68955248 | None:intergenic | 45.0% |
| !! | TCGCCGACTTCAATATACCA+TGG | + | chr8_1:68956016-68956035 | None:intergenic | 45.0% |
| CTACACACAAGAGTAGAAGG+TGG | - | chr8_1:68956058-68956077 | Msa1210190:CDS | 45.0% | |
| AGTGATCTTGTGCTTTCTGC+AGG | - | chr8_1:68956261-68956280 | Msa1210190:intron | 45.0% | |
| ! | CAAGTGCTTAGTACTGGAAG+GGG | + | chr8_1:68956362-68956381 | None:intergenic | 45.0% |
| ! | CCAAGTGCTTAGTACTGGAA+GGG | + | chr8_1:68956363-68956382 | None:intergenic | 45.0% |
| TCATGCCAAGTGCTTAGTAC+TGG | + | chr8_1:68956368-68956387 | None:intergenic | 45.0% | |
| AGTAAGTAGTGTACGGACCA+TGG | - | chr8_1:68956495-68956514 | Msa1210190:intron | 45.0% | |
| CCGATGTTCGTAGTGATCAT+AGG | - | chr8_1:68956699-68956718 | Msa1210190:intron | 45.0% | |
| GCTACACGATCTTCTTCTAC+AGG | + | chr8_1:68956762-68956781 | None:intergenic | 45.0% | |
| ! | TGTAGCATGGCTGGTTATTG+TGG | - | chr8_1:68956776-68956795 | Msa1210190:intron | 45.0% |
| ! | TGGCTGGTTATTGTGGACTA+TGG | - | chr8_1:68956783-68956802 | Msa1210190:intron | 45.0% |
| !! | AAAAAAAAAAAAATCAAAAA+TGG | - | chr8_1:68956193-68956212 | Msa1210190:intron | 5.0% |
| CCGAACAGAACAGGTCGTAT+AGG | + | chr8_1:68952083-68952102 | None:intergenic | 50.0% | |
| GGAACAGAACCGAACAGAAC+AGG | + | chr8_1:68952092-68952111 | None:intergenic | 50.0% | |
| ! | AGAGGTTTGATTCGCCGACT+TGG | + | chr8_1:68952147-68952166 | None:intergenic | 50.0% |
| AGAGTGAGAGAAGGAGAAGG+TGG | + | chr8_1:68952249-68952268 | None:intergenic | 50.0% | |
| !! | CACTGATTCCCTAAGTGAGC+TGG | - | chr8_1:68952890-68952909 | Msa1210190:intron | 50.0% |
| CGTTTGCCGCAAGACTACAA+TGG | - | chr8_1:68953009-68953028 | Msa1210190:CDS | 50.0% | |
| ! | GCAGAGCCATTGTAGTCTTG+CGG | + | chr8_1:68953018-68953037 | None:intergenic | 50.0% |
| GAAACAAGCACTTCAGGGTG+TGG | - | chr8_1:68954082-68954101 | Msa1210190:CDS | 50.0% | |
| TACGAGCTCTCCGTAAGCTA+TGG | - | chr8_1:68954258-68954277 | Msa1210190:CDS | 50.0% | |
| ACCACACTTGACGTGTCAAC+TGG | - | chr8_1:68954311-68954330 | Msa1210190:intron | 50.0% | |
| CCACACTTGACGTGTCAACT+GGG | - | chr8_1:68954312-68954331 | Msa1210190:intron | 50.0% | |
| TTGACGTGTCAACTGGGCAA+TGG | - | chr8_1:68954318-68954337 | Msa1210190:intron | 50.0% | |
| GGTACCACGAAGCTGATATG+AGG | - | chr8_1:68954835-68954854 | Msa1210190:CDS | 50.0% | |
| CTGTCCTCATATCAGCTTCG+TGG | + | chr8_1:68954842-68954861 | None:intergenic | 50.0% | |
| CACGAAGCTGATATGAGGAC+AGG | - | chr8_1:68954840-68954859 | Msa1210190:CDS | 50.0% | |
| ACCGTGAGTTCTTCTACGTG+TGG | - | chr8_1:68955037-68955056 | Msa1210190:CDS | 50.0% | |
| !! | AATTTGGAGTGCTGCCAGAG+AGG | - | chr8_1:68955064-68955083 | Msa1210190:intron | 50.0% |
| TCAGCAAACTCAGGGCGTAA+CGG | + | chr8_1:68955263-68955282 | None:intergenic | 50.0% | |
| CCCTTCCAGTACTAAGCACT+TGG | - | chr8_1:68956360-68956379 | Msa1210190:intron | 50.0% | |
| ! | GCCAAGTGCTTAGTACTGGA+AGG | + | chr8_1:68956364-68956383 | None:intergenic | 50.0% |
| !! | ATTGCACTGGCTCGATTTGC+TGG | + | chr8_1:68956611-68956630 | None:intergenic | 50.0% |
| CACTACGAACATCGGAGATG+TGG | + | chr8_1:68956694-68956713 | None:intergenic | 50.0% | |
| AGAAGATCGTGTAGCATGGC+TGG | - | chr8_1:68956767-68956786 | Msa1210190:intron | 50.0% | |
| GCGCACTCCCTTCTCGAATT+CGG | + | chr8_1:68953218-68953237 | None:intergenic | 55.0% | |
| ! | AATTCGAGAAGGGAGTGCGC+TGG | - | chr8_1:68953218-68953237 | Msa1210190:intron | 55.0% |
| CCAGTAGGCGTATTGAACGC+TGG | + | chr8_1:68953603-68953622 | None:intergenic | 55.0% | |
| CCAGCGTTCAATACGCCTAC+TGG | - | chr8_1:68953600-68953619 | Msa1210190:intron | 55.0% | |
| CCCAGTTGACACGTCAAGTG+TGG | + | chr8_1:68954315-68954334 | None:intergenic | 55.0% | |
| AGCATTTCAGACACGGTCCC+TGG | - | chr8_1:68954688-68954707 | Msa1210190:intron | 55.0% | |
| !! | AGCATTTTGGCCTGGCCTAC+AGG | - | chr8_1:68954896-68954915 | Msa1210190:CDS | 55.0% |
| CAGCTACTAACCTGTAGGCC+AGG | + | chr8_1:68954909-68954928 | None:intergenic | 55.0% | |
| CTGGCCTACAGGTTAGTAGC+TGG | - | chr8_1:68954907-68954926 | Msa1210190:CDS | 55.0% | |
| ACGAACATCGGAGATGTGGC+AGG | + | chr8_1:68956690-68956709 | None:intergenic | 55.0% | |
| GCACTTCAGGGTGTGGTGAG+AGG | - | chr8_1:68954089-68954108 | Msa1210190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 68952028 | 68957090 | 68952028 | ID=Msa1210190;Name=Msa1210190 |
| chr8_1 | mRNA | 68952028 | 68957090 | 68952028 | ID=Msa1210190-mRNA-1;Parent=Msa1210190;Name=Msa1210190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=163|1|1|1|0.92|0.93|15|273|570 |
| chr8_1 | exon | 68952028 | 68952516 | 68952028 | ID=Msa1210190-mRNA-1:exon:23061;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68952685 | 68952835 | 68952685 | ID=Msa1210190-mRNA-1:exon:23060;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68952966 | 68953107 | 68952966 | ID=Msa1210190-mRNA-1:exon:23059;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68953804 | 68953904 | 68953804 | ID=Msa1210190-mRNA-1:exon:23058;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68954033 | 68954118 | 68954033 | ID=Msa1210190-mRNA-1:exon:23057;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68954201 | 68954282 | 68954201 | ID=Msa1210190-mRNA-1:exon:23056;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68954409 | 68954529 | 68954409 | ID=Msa1210190-mRNA-1:exon:23055;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68954750 | 68954929 | 68954750 | ID=Msa1210190-mRNA-1:exon:23054;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68955015 | 68955063 | 68955015 | ID=Msa1210190-mRNA-1:exon:23053;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68955468 | 68955650 | 68955468 | ID=Msa1210190-mRNA-1:exon:23052;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68955827 | 68955926 | 68955827 | ID=Msa1210190-mRNA-1:exon:23051;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68956054 | 68956115 | 68956054 | ID=Msa1210190-mRNA-1:exon:23050;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68956195 | 68956260 | 68956195 | ID=Msa1210190-mRNA-1:exon:23049;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68956332 | 68956374 | 68956332 | ID=Msa1210190-mRNA-1:exon:23048;Parent=Msa1210190-mRNA-1 |
| chr8_1 | exon | 68956797 | 68957090 | 68956797 | ID=Msa1210190-mRNA-1:exon:23047;Parent=Msa1210190-mRNA-1 |
| chr8_1 | five_prime_UTR | 68956928 | 68957090 | 68956928 | ID=Msa1210190-mRNA-1:five_prime_utr;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68956797 | 68956927 | 68956797 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68956332 | 68956374 | 68956332 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68956195 | 68956260 | 68956195 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68956054 | 68956115 | 68956054 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68955827 | 68955926 | 68955827 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68955468 | 68955650 | 68955468 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68955015 | 68955063 | 68955015 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68954750 | 68954929 | 68954750 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68954409 | 68954529 | 68954409 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68954201 | 68954282 | 68954201 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68954033 | 68954118 | 68954033 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68953804 | 68953904 | 68953804 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68952966 | 68953107 | 68952966 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68952685 | 68952835 | 68952685 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | CDS | 68952301 | 68952516 | 68952301 | ID=Msa1210190-mRNA-1:cds;Parent=Msa1210190-mRNA-1 |
| chr8_1 | three_prime_UTR | 68952028 | 68952300 | 68952028 | ID=Msa1210190-mRNA-1:three_prime_utr;Parent=Msa1210190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
