AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748070 MtrunA17_Chr5g0398701 97.019 671 15 2 1 668 1 669 0.0 1345
Msa0748070 MtrunA17_Chr4g0056851 81.448 663 108 6 12 668 116 769 0.0 1137
Msa0748070 MtrunA17_Chr4g0010911 56.671 697 221 9 28 651 5 693 0.0 788
Msa0748070 MtrunA17_Chr4g0067491 51.128 133 37 1 263 367 7 139 6.34e-36 132
Msa0748070 MtrunA17_Chr3g0126071 22.873 529 338 20 43 550 19 498 1.46e-20 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748070 AT1G12360.1 73.042 664 161 6 14 668 12 666 0.0 1013
Msa0748070 AT4G12120.1 63.485 660 221 7 17 668 15 662 0.0 876
Msa0748070 AT1G02010.1 64.350 662 202 9 16 661 17 660 0.0 859
Msa0748070 AT1G02010.2 62.689 662 200 10 16 661 17 647 0.0 850
Msa0748070 AT1G02010.4 61.561 692 202 10 16 661 17 690 0.0 843
Msa0748070 AT1G02010.5 64.241 646 197 9 32 661 1 628 0.0 834
Msa0748070 AT1G02010.3 63.545 598 184 9 16 597 17 596 0.0 779
Msa0748070 AT1G02010.6 63.826 528 161 7 147 661 1 511 0.0 675
Msa0748070 AT1G77140.1 22.889 533 335 19 43 550 19 500 1.37e-19 93.6
Msa0748070 AT2G17980.1 21.696 401 272 13 29 407 19 399 8.06e-12 68.9

Find 140 sgRNAs with CRISPR-Local

Find 547 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTAATTTGCTTGAAATTT+TGG 0.120193 5_2:+1085216 None:intergenic
CATAACCTGTACCTCTATTA+TGG 0.176535 5_2:+1078685 None:intergenic
AGAGCATTAGAGGATCTATT+TGG 0.212778 5_2:-1082146 Msa0748070:CDS
GGAGTCAGGACTGCGGGAAC+TGG 0.293146 5_2:-1079384 Msa0748070:CDS
CAAAGCTTGCTGCTGGAGTC+TGG 0.293765 5_2:-1081853 Msa0748070:CDS
ACATACCTTCCAAGTTGATT+TGG 0.296521 5_2:+1084991 None:intergenic
TGAGAGAAAAGAAGTTCTTT+TGG 0.301336 5_2:-1081449 Msa0748070:CDS
TGATACCATGCAGATGAATT+TGG 0.305087 5_2:-1082962 Msa0748070:intron
AAAACTAATTCTCTGGAAAT+AGG 0.306579 5_2:+1083136 None:intergenic
GTCTTCTTGATCCAGCTTGC+AGG 0.306762 5_2:-1079428 Msa0748070:intron
CTGAATAGGGAAATTATTCT+AGG 0.309246 5_2:-1076411 Msa0748070:CDS
GTGTCATGATTTGCTGAATA+TGG 0.312135 5_2:-1081609 Msa0748070:CDS
GTCTCAGTCTGAGGAAAATT+AGG 0.327470 5_2:+1081800 None:intergenic
CGTCACATACTTCCTGTATA+AGG 0.331884 5_2:+1083261 None:intergenic
ACCATATACCTGGCAATCTA+TGG 0.332263 5_2:+1082930 None:intergenic
CGACTATTGTACATCATATC+TGG 0.332409 5_2:+1076206 None:intergenic
CACGAGAAATCAACTGTCTA+AGG 0.336896 5_2:-1077918 Msa0748070:CDS
TAGAAATTACCTTTACCTTC+TGG 0.353031 5_2:+1078780 None:intergenic
AAACGTTTGACTGGTGCTTT+CGG 0.359481 5_2:-1078818 Msa0748070:CDS
ACTCCAGCAGCAAGCTTTGT+AGG 0.367263 5_2:+1081857 None:intergenic
AGCTTACTAGAAGGCTGAAT+AGG 0.377664 5_2:-1076425 Msa0748070:CDS
AAATAATGAGAGAGCATTAG+AGG 0.380377 5_2:-1082156 Msa0748070:CDS
ATAACCTGTACCTCTATTAT+GGG 0.393071 5_2:+1078686 None:intergenic
TATTTCCAGAGAATTAGTTT+TGG 0.393323 5_2:-1083134 Msa0748070:CDS
AATGTCCAAAACTAATTCTC+TGG 0.394956 5_2:+1083129 None:intergenic
CTGAGGGTGTCGTCTCGATT+AGG 0.402968 5_2:-1083097 Msa0748070:CDS
AGGACTGCGGGAACTGGGCC+AGG 0.408525 5_2:-1079378 Msa0748070:CDS
AACAGTATCATTAGGGAGTC+AGG 0.409285 5_2:-1079398 Msa0748070:CDS
GCTTACTAGAAGGCTGAATA+GGG 0.411575 5_2:-1076424 Msa0748070:CDS
TTCTAGTGATTTCAAGAAGA+TGG 0.412872 5_2:-1076602 Msa0748070:CDS
GAGCATTAGAGGATCTATTT+GGG 0.412978 5_2:-1082145 Msa0748070:CDS
TATGTCCACTCATGTATTAC+AGG 0.422700 5_2:+1081641 None:intergenic
TCTGATTCCTCCTCCTCTTA+CGG 0.423162 5_2:-1085251 Msa0748070:CDS
CTTGTCGGCACGCAGTGATT+CGG 0.429467 5_2:-1076638 Msa0748070:intron
TGTGTTTGCGTCTAGGGACT+TGG 0.431530 5_2:+1081904 None:intergenic
CGACTATTTGTATTCATTGT+CGG 0.433005 5_2:-1076574 Msa0748070:CDS
TGAGAAATTTGACGGAGAAA+AGG 0.436497 5_2:-1079063 Msa0748070:CDS
GTGAATAACTTGAGAATGCT+TGG 0.439454 5_2:-1078860 Msa0748070:CDS
TTGCCTGTAGGTACTAATAA+TGG 0.444030 5_2:-1084211 Msa0748070:intron
AGTCATTGTGTTTGCGTCTA+GGG 0.444874 5_2:+1081898 None:intergenic
TAGTCATTGTGTTTGCGTCT+AGG 0.448346 5_2:+1081897 None:intergenic
TGGAGGATCATGATCCTGTA+TGG 0.450396 5_2:-1081429 Msa0748070:CDS
TCAGATGTGTTACTTCTCTC+TGG 0.455505 5_2:+1083846 None:intergenic
GAGAAATTTGACGGAGAAAA+GGG 0.455838 5_2:-1079062 Msa0748070:CDS
CACAAATTCAGCATGGTTCA+AGG 0.455901 5_2:-1081252 Msa0748070:intron
ATCAAGACGTACACCAAGTT+GGG 0.456649 5_2:-1077807 Msa0748070:CDS
AATTATTCAAACCTCTGATC+GGG 0.457842 5_2:+1076543 None:intergenic
GGTAGACCTCCGGCCTTGCC+AGG 0.458860 5_2:+1081472 None:intergenic
CTGGAAGGGCTCCCTTATAC+AGG 0.460763 5_2:-1083273 Msa0748070:CDS
GTTCCTACAAAGCTTGCTGC+TGG 0.461493 5_2:-1081860 Msa0748070:CDS
GTAATTGGCGCCACCGTAAG+AGG 0.465993 5_2:+1085238 None:intergenic
TGAATAACTTGAGAATGCTT+GGG 0.470800 5_2:-1078859 Msa0748070:CDS
TGATGTAAAGTGCCAGCAAA+AGG 0.472976 5_2:+1077848 None:intergenic
AAACCGCGAGGCTCTGATGA+TGG 0.474037 5_2:-1077782 Msa0748070:CDS
TATTGACAGAACTATTGATC+AGG 0.475763 5_2:-1081762 Msa0748070:intron
GAGTCAGGACTGCGGGAACT+GGG 0.476609 5_2:-1079383 Msa0748070:CDS
CAGGGGATTCCAAATCAACT+TGG 0.480880 5_2:-1085000 Msa0748070:CDS
ATGTGTTACTTCTCTCTGGT+TGG 0.485539 5_2:+1083850 None:intergenic
AAATATATAGCATCCATTGT+TGG 0.485606 5_2:+1083880 None:intergenic
GTCACATACTTCCTGTATAA+GGG 0.487146 5_2:+1083262 None:intergenic
TGGCGAAGCTCGAGCCATAC+AGG 0.490327 5_2:+1081415 None:intergenic
CGTCTTGATCTCATTGAATG+AGG 0.494301 5_2:+1077821 None:intergenic
GTTTATCCTGAGAAATTTGA+CGG 0.499699 5_2:-1079071 Msa0748070:CDS
CACGCAGTGATTCGGTGCTT+AGG 0.499930 5_2:-1076630 Msa0748070:intron
GTCAATAATGAGCAACTCGC+AGG 0.502476 5_2:+1081778 None:intergenic
CTTGCCACAAGCTTACTAGA+AGG 0.509619 5_2:-1076434 Msa0748070:CDS
AAAGCTTGCTGCTGGAGTCT+GGG 0.510328 5_2:-1081852 Msa0748070:CDS
CGACAAAACTAACCTCTACA+TGG 0.514875 5_2:+1080311 None:intergenic
CTCTGGAAATAGGTGAGCTA+AGG 0.517467 5_2:+1083146 None:intergenic
GCTCTGATGATGGGTATTCA+AGG 0.518562 5_2:-1077772 Msa0748070:intron
TTTATCAGACATGGCTGGAA+GGG 0.518629 5_2:-1083287 Msa0748070:CDS
AAATTATTCAAACCTCTGAT+CGG 0.523929 5_2:+1076542 None:intergenic
CTGCAAGGATAGAACGTCCT+GGG 0.524780 5_2:-1078742 Msa0748070:CDS
AAACAAGATCTTGCTCCACC+TGG 0.525352 5_2:+1079360 None:intergenic
AACAAGGGACTTACAGAAGA+TGG 0.525806 5_2:-1080380 Msa0748070:CDS
TCTAGTGATTTCAAGAAGAT+GGG 0.526090 5_2:-1076601 Msa0748070:CDS
GTTTGATATCCAGAAGGTAA+AGG 0.529190 5_2:-1078789 Msa0748070:CDS
GGCGCCACCGTAAGAGGAGG+AGG 0.531634 5_2:+1085244 None:intergenic
CATTAGGGAGTCAGGACTGC+GGG 0.533800 5_2:-1079390 Msa0748070:CDS
GCGCTTGTTAATGATTCTTG+CGG 0.538621 5_2:-1079096 Msa0748070:CDS
TTTAAGGTTCCTGGCAAGGC+CGG 0.541852 5_2:-1081481 Msa0748070:intron
CGGTGGCGCAACCCGATCAG+AGG 0.552061 5_2:-1076554 Msa0748070:intron
AACCGCGAGGCTCTGATGAT+GGG 0.553335 5_2:-1077781 Msa0748070:CDS
AAGGTTCCTGGCAAGGCCGG+AGG 0.557439 5_2:-1081478 Msa0748070:CDS
AATGAAGAGAATAATCGTAA+AGG 0.560472 5_2:-1082122 Msa0748070:CDS
GCTGCAAGGATAGAACGTCC+TGG 0.561595 5_2:-1078743 Msa0748070:CDS
AAGGCAACCGTTACCAACAA+TGG 0.561902 5_2:-1083893 Msa0748070:CDS
TCAATTTGTTCGCTGTATTG+TGG 0.564959 5_2:+1080346 None:intergenic
GATCAAGACGTACACCAAGT+TGG 0.565011 5_2:-1077808 Msa0748070:CDS
ATAGCATCCATTGTTGGTAA+CGG 0.565143 5_2:+1083886 None:intergenic
AACTCGCAGGTCTCAGTCTG+AGG 0.566951 5_2:+1081791 None:intergenic
CTTGGCAGCACGAAAGCGGA+TGG 0.567144 5_2:+1081922 None:intergenic
TGGACATTAGAAAAGGTCTG+AGG 0.569327 5_2:-1083114 Msa0748070:CDS
GGACATTAGAAAAGGTCTGA+GGG 0.574848 5_2:-1083113 Msa0748070:CDS
AATACCGTGATGAATTGTGC+AGG 0.575005 5_2:+1076369 None:intergenic
GATTCCTCCTCCTCTTACGG+TGG 0.583008 5_2:-1085248 Msa0748070:CDS
AAAGGGTCAGAATTTGATGA+AGG 0.585880 5_2:-1079045 Msa0748070:intron
AATGTCTAACTCATGCAAGA+TGG 0.586916 5_2:-1084169 Msa0748070:CDS
GCAGCACGAAAGCGGATGGA+AGG 0.590832 5_2:+1081926 None:intergenic
ACTGCGGGAACTGGGCCAGG+TGG 0.591719 5_2:-1079375 Msa0748070:CDS
AGTCTGAGGAAAATTAGGTA+TGG 0.591962 5_2:+1081805 None:intergenic
GATTATTACACGAAATGCTA+AGG 0.597429 5_2:-1085033 Msa0748070:CDS
TGCCAGCAAAAGGTGAGCTG+TGG 0.599301 5_2:+1077858 None:intergenic
TCAGCCTTCTAGTAAGCTTG+TGG 0.601262 5_2:+1076430 None:intergenic
GGATTCCAAATCAACTTGGA+AGG 0.607966 5_2:-1084996 Msa0748070:intron
CTATTTGTATTCATTGTCGG+TGG 0.608557 5_2:-1076571 Msa0748070:CDS
TGTTGCATGTTTGAATGCAA+TGG 0.613656 5_2:-1082099 Msa0748070:CDS
GAGGAGCATCATGTCTATGT+CGG 0.615188 5_2:-1085276 Msa0748070:exon
CAAACTCTCCCTCCATGTAG+AGG 0.618973 5_2:-1080323 Msa0748070:intron
GGGACTTGGCAGCACGAAAG+CGG 0.620933 5_2:+1081918 None:intergenic
CTTACATGAAACACCTTCGT+CGG 0.627545 5_2:+1084137 None:intergenic
CAATGAATACAAATAGTCGT+TGG 0.627844 5_2:+1076578 None:intergenic
GAGCTGTGGAAAGTTGCACT+TGG 0.632632 5_2:+1077872 None:intergenic
AAAACTAACCTCTACATGGA+GGG 0.632717 5_2:+1080315 None:intergenic
TCTTAAGTTTGATATCCAGA+AGG 0.643053 5_2:-1078795 Msa0748070:CDS
GAGAAATCAACTGTCTAAGG+AGG 0.645035 5_2:-1077915 Msa0748070:CDS
GGTAGCACGGTTAACAGATG+AGG 0.645727 5_2:-1078894 Msa0748070:CDS
TCATGATTTGCTGAATATGG+AGG 0.647982 5_2:-1081606 Msa0748070:CDS
CTACATCAGCAATATGAGCA+TGG 0.648526 5_2:+1081395 None:intergenic
GCACTTGGATCATTCAAACA+TGG 0.648843 5_2:+1077887 None:intergenic
TTGCTCCTGTAATACATGAG+TGG 0.652791 5_2:-1081646 Msa0748070:CDS
GAATAACTTGAGAATGCTTG+GGG 0.654755 5_2:-1078858 Msa0748070:CDS
ATTGGCGCCACCGTAAGAGG+AGG 0.656163 5_2:+1085241 None:intergenic
TCGATTAGGTGCATTAAGAG+AGG 0.657496 5_2:-1083083 Msa0748070:intron
CATGATTTGCTGAATATGGA+GGG 0.667358 5_2:-1081605 Msa0748070:CDS
GCTTTGTAGGAACAAGATCA+CGG 0.669039 5_2:+1081870 None:intergenic
ATTCAGCAAATCATGACACA+TGG 0.674046 5_2:+1081613 None:intergenic
ATGGCTGATATCACCGACGA+AGG 0.680593 5_2:-1084150 Msa0748070:intron
GACAATGTCAGGCTAGTGAA+CGG 0.683507 5_2:-1081318 Msa0748070:intron
AAAGCTGCACAAATTCAGCA+TGG 0.683869 5_2:-1081259 Msa0748070:CDS
TGCAAGGATAGAACGTCCTG+GGG 0.686134 5_2:-1078741 Msa0748070:CDS
TCATTAGGGAGTCAGGACTG+CGG 0.691345 5_2:-1079391 Msa0748070:CDS
TGATCCTGCACAATTCATCA+CGG 0.693413 5_2:-1076373 Msa0748070:intron
CAAAACTAACCTCTACATGG+AGG 0.693964 5_2:+1080314 None:intergenic
GTAGCAGTGAAATGTCAACA+AGG 0.703273 5_2:-1080396 Msa0748070:CDS
TTGAAGACATACACAAACGA+AGG 0.709550 5_2:-1083912 Msa0748070:CDS
TAGCAGTGAAATGTCAACAA+GGG 0.710043 5_2:-1080395 Msa0748070:CDS
TACCCATCATCAGAGCCTCG+CGG 0.738058 5_2:+1077779 None:intergenic
CCAAGTTGGGCAAAACCGCG+AGG 0.739809 5_2:-1077794 Msa0748070:CDS
AATAACTTGAGAATGCTTGG+GGG 0.791847 5_2:-1078857 Msa0748070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTTATTTAAAA+TGG - chr5_2:1080407-1080426 Msa0748070:intron 0.0%
!!! TAATTAATTTTATTCCTTTT+TGG - chr5_2:1078682-1078701 Msa0748070:intron 10.0%
!!! TTTAAAAAAAAGAGTATAAT+TGG - chr5_2:1081841-1081860 Msa0748070:CDS 10.0%
!!! ATAACTTAAGATTTTAAAAT+AGG + chr5_2:1082078-1082097 None:intergenic 10.0%
!!! AAATTTTTATATTTTCTTGT+CGG - chr5_2:1084892-1084911 Msa0748070:intron 10.0%
!!! AATAATTTTTCCAATAAATT+GGG - chr5_2:1085018-1085037 Msa0748070:CDS 10.0%
!! AATTAACACATCTATTATTA+AGG - chr5_2:1077485-1077504 Msa0748070:intron 15.0%
!! AAATTACTTCATACATTTAT+TGG + chr5_2:1077840-1077859 None:intergenic 15.0%
!!! TTTTAAGTTTTGAATATCAA+AGG - chr5_2:1077858-1077877 Msa0748070:CDS 15.0%
!!! TTTAAGTTTTGAATATCAAA+GGG - chr5_2:1077859-1077878 Msa0748070:CDS 15.0%
!! AAATTTATTAAGAACCAAAA+AGG + chr5_2:1078699-1078718 None:intergenic 15.0%
!!! AAACACTAATTTGTAATTAT+AGG + chr5_2:1080868-1080887 None:intergenic 15.0%
!! GAATATGTTGAAATTATTAT+GGG + chr5_2:1080978-1080997 None:intergenic 15.0%
!! TGAATATGTTGAAATTATTA+TGG + chr5_2:1080979-1080998 None:intergenic 15.0%
!! ATATATTTAAGAATGTTAGA+TGG - chr5_2:1081518-1081537 Msa0748070:intron 15.0%
!! TTAATAGTGAAAAAGAAATA+AGG + chr5_2:1081697-1081716 None:intergenic 15.0%
!! TTAAGATTAGAGTATAATTA+AGG - chr5_2:1081713-1081732 Msa0748070:intron 15.0%
!! TAAGATTAGAGTATAATTAA+GGG - chr5_2:1081714-1081733 Msa0748070:intron 15.0%
!!! TTACACTTTTTTAAATTGTA+GGG + chr5_2:1081905-1081924 None:intergenic 15.0%
!!! TTTACACTTTTTTAAATTGT+AGG + chr5_2:1081906-1081925 None:intergenic 15.0%
!!! ACAATTTAAAAAAGTGTAAA+TGG - chr5_2:1081906-1081925 Msa0748070:CDS 15.0%
!!! CAATTTAAAAAAGTGTAAAT+GGG - chr5_2:1081907-1081926 Msa0748070:CDS 15.0%
!! AAAAATTAACAGTATCATTA+GGG - chr5_2:1082140-1082159 Msa0748070:CDS 15.0%
!! AAGTAAGATATTCTTAATAT+GGG - chr5_2:1082256-1082275 Msa0748070:intron 15.0%
!! CATGTATGAAATTTAATATA+TGG + chr5_2:1082389-1082408 None:intergenic 15.0%
!! AAATTTAATTGAAGTTAGAA+TGG - chr5_2:1084605-1084624 Msa0748070:intron 15.0%
!!! GAATAATTTTTCCAATAAAT+TGG - chr5_2:1085017-1085036 Msa0748070:CDS 15.0%
!! ATAATTATTCAGCTTTACTT+TGG - chr5_2:1076722-1076741 Msa0748070:intron 20.0%
!!! AATATAAACTTTGACTTGTA+TGG - chr5_2:1077036-1077055 Msa0748070:intron 20.0%
!! AAAGGAAATAGAACTAAAAA+AGG + chr5_2:1077579-1077598 None:intergenic 20.0%
!!! TTTTAGTTCTATTTCCTTTA+TGG - chr5_2:1077580-1077599 Msa0748070:intron 20.0%
!!! ATTCCAAAATGTTTTGTAAA+CGG + chr5_2:1077793-1077812 None:intergenic 20.0%
!! AACATAAGGTGAAAAATAAA+AGG + chr5_2:1077941-1077960 None:intergenic 20.0%
!!! TAACATGATAATGAATTACA+TGG - chr5_2:1078044-1078063 Msa0748070:intron 20.0%
!!! ATAATTATACCATAACCTTT+TGG - chr5_2:1078119-1078138 Msa0748070:intron 20.0%
!!! AATTATGTTTTTATCAGACA+TGG - chr5_2:1078249-1078268 Msa0748070:intron 20.0%
!!! TTTTTTTTTTCTCTTCTTGT+AGG - chr5_2:1078365-1078384 Msa0748070:intron 20.0%
!!! TTTTTTTTTCTCTTCTTGTA+GGG - chr5_2:1078366-1078385 Msa0748070:intron 20.0%
!!! AATATTTTAGTTATTGTGTG+TGG + chr5_2:1079116-1079135 None:intergenic 20.0%
!! ACATATTTAGTATCTTTCAA+GGG + chr5_2:1079247-1079266 None:intergenic 20.0%
!! TACATATTTAGTATCTTTCA+AGG + chr5_2:1079248-1079267 None:intergenic 20.0%
!!! ATCTAGTGTTTGTTTTTTTA+AGG - chr5_2:1080048-1080067 Msa0748070:intron 20.0%
!! ACTTTGAATATATTTAGTGA+TGG - chr5_2:1080580-1080599 Msa0748070:intron 20.0%
!! CTTTGAATATATTTAGTGAT+GGG - chr5_2:1080581-1080600 Msa0748070:intron 20.0%
!! TTATTATATTCTAACAGAAC+AGG + chr5_2:1080667-1080686 None:intergenic 20.0%
!! CTATATATGTTGTGAATATT+TGG - chr5_2:1081001-1081020 Msa0748070:intron 20.0%
!! AAGATAAAATTAGTTGTATC+AGG + chr5_2:1081269-1081288 None:intergenic 20.0%
!! CTTAAATATATAAAACACTC+AGG + chr5_2:1081509-1081528 None:intergenic 20.0%
!! AATAAGTAAAATAGAACATG+TGG - chr5_2:1081560-1081579 Msa0748070:intron 20.0%
!! ATAAGTAAAATAGAACATGT+GGG - chr5_2:1081561-1081580 Msa0748070:intron 20.0%
!!! AGTTTTTCTTTTTAAACCAT+GGG + chr5_2:1081934-1081953 None:intergenic 20.0%
!! AAAGAAAAACTGAAATTCAA+CGG - chr5_2:1081943-1081962 Msa0748070:intron 20.0%
!! ACAAAACAATAGTGAATTTA+GGG + chr5_2:1081972-1081991 None:intergenic 20.0%
!! AACAAAACAATAGTGAATTT+AGG + chr5_2:1081973-1081992 None:intergenic 20.0%
!!! TATACAAGCTTTATATATGA+TGG - chr5_2:1082095-1082114 Msa0748070:CDS 20.0%
!! GAAAAATTAACAGTATCATT+AGG - chr5_2:1082139-1082158 Msa0748070:CDS 20.0%
!! GAAGTAAGATATTCTTAATA+TGG - chr5_2:1082255-1082274 Msa0748070:intron 20.0%
!!! TTTTAACATGTACATTGATT+AGG + chr5_2:1082305-1082324 None:intergenic 20.0%
!! TTATTCATCATATGGAAAAA+CGG + chr5_2:1083030-1083049 None:intergenic 20.0%
!! ACTTGAAATTATTCATCATA+TGG + chr5_2:1083038-1083057 None:intergenic 20.0%
!!! AGATTGTATTGATAAAACTA+TGG - chr5_2:1083113-1083132 Msa0748070:CDS 20.0%
!! ATACTAATAAGGATGATTAA+GGG - chr5_2:1083232-1083251 Msa0748070:intron 20.0%
!! TTAACTAGAAAGTAATTTCA+AGG - chr5_2:1084416-1084435 Msa0748070:intron 20.0%
!! TAACTAGAAAGTAATTTCAA+GGG - chr5_2:1084417-1084436 Msa0748070:intron 20.0%
!!! GAATTTTCTTCGTATTAAAT+AGG - chr5_2:1084443-1084462 Msa0748070:intron 20.0%
!!! TGAATGCATGTTATTTTTTA+AGG - chr5_2:1084813-1084832 Msa0748070:intron 20.0%
!!! AAAAATTTGTTTGCAACTAA+GGG + chr5_2:1084880-1084899 None:intergenic 20.0%
!!! TAAAAATTTGTTTGCAACTA+AGG + chr5_2:1084881-1084900 None:intergenic 20.0%
! AAAAAGTGATCAAATCAAAG+AGG - chr5_2:1076219-1076238 Msa0748070:CDS 25.0%
!!! TTGCTTGAAATTTTGGTAAT+TGG + chr5_2:1076325-1076344 None:intergenic 25.0%
!!! GTGTAATTTGCTTGAAATTT+TGG + chr5_2:1076332-1076351 None:intergenic 25.0%
!!! ATGATGATGATATTGTTTTC+AGG - chr5_2:1076490-1076509 Msa0748070:intron 25.0%
!! TACTTTGGATATCTAGAATT+AGG - chr5_2:1076737-1076756 Msa0748070:intron 25.0%
! CTCATATGTAAAGTATGTTT+CGG + chr5_2:1077218-1077237 None:intergenic 25.0%
!! TCCTTTATGGTTTGATATTT+TGG - chr5_2:1077593-1077612 Msa0748070:intron 25.0%
! ACCAAAATATCAAACCATAA+AGG + chr5_2:1077597-1077616 None:intergenic 25.0%
! AAATATATAGCATCCATTGT+TGG + chr5_2:1077668-1077687 None:intergenic 25.0%
! CATATTTGGAAGTAAACATA+AGG + chr5_2:1077955-1077974 None:intergenic 25.0%
! TACAAATCTCATGTCATATT+TGG + chr5_2:1077969-1077988 None:intergenic 25.0%
! GTTATTTGTAGAGAATAGAA+AGG + chr5_2:1078028-1078047 None:intergenic 25.0%
!! GAAAATATTTTACAGCCAAA+AGG + chr5_2:1078137-1078156 None:intergenic 25.0%
! GATGAGAAAACAACTAAATA+GGG + chr5_2:1078213-1078232 None:intergenic 25.0%
! TGATGAGAAAACAACTAAAT+AGG + chr5_2:1078214-1078233 None:intergenic 25.0%
! ACACACATAAGATACTATAA+TGG + chr5_2:1078311-1078330 None:intergenic 25.0%
!! AAAATAAATAAGTTGAAGCC+AGG + chr5_2:1078341-1078360 None:intergenic 25.0%
!! AAAACTAATTCTCTGGAAAT+AGG + chr5_2:1078412-1078431 None:intergenic 25.0%
!!! TATTTCCAGAGAATTAGTTT+TGG - chr5_2:1078411-1078430 Msa0748070:intron 25.0%
!!! TTAGTTTTGGACATTAGAAA+AGG - chr5_2:1078424-1078443 Msa0748070:intron 25.0%
! AAACTGTTGCATTAAAAGTA+TGG + chr5_2:1078530-1078549 None:intergenic 25.0%
! ATTATAGTCATAATGAACGA+AGG + chr5_2:1078666-1078685 None:intergenic 25.0%
!! TTTAAGCCTTCTTTTGTATA+TGG + chr5_2:1078803-1078822 None:intergenic 25.0%
! CAAAAATATGCAATTAGGTA+TGG + chr5_2:1078851-1078870 None:intergenic 25.0%
!!! CTAATTGCATATTTTTGAGT+CGG - chr5_2:1078854-1078873 Msa0748070:CDS 25.0%
!!! TAATTGCATATTTTTGAGTC+GGG - chr5_2:1078855-1078874 Msa0748070:CDS 25.0%
!!! CAATTTTGATTATTCATGTG+CGG - chr5_2:1078983-1079002 Msa0748070:intron 25.0%
! AATCGGGAATTTAATATTAG+CGG - chr5_2:1079012-1079031 Msa0748070:intron 25.0%
! CACTTTATATCTTTGGTTAT+TGG + chr5_2:1079039-1079058 None:intergenic 25.0%
! AACCAAAGATATAAAGTGAA+AGG - chr5_2:1079041-1079060 Msa0748070:intron 25.0%
! AATGAAGAGAATAATCGTAA+AGG - chr5_2:1079423-1079442 Msa0748070:intron 25.0%
!! TGAAGCATGTAATATGTTTT+AGG - chr5_2:1079591-1079610 Msa0748070:intron 25.0%
!! AATAACCAACAAATTTTCCA+AGG + chr5_2:1079812-1079831 None:intergenic 25.0%
! AAAAAACAAACACTAGATTC+AGG + chr5_2:1080046-1080065 None:intergenic 25.0%
!!! AATATCAAAAGGTATTCACA+TGG + chr5_2:1080204-1080223 None:intergenic 25.0%
! ACATTGTCATCAATATCAAA+AGG + chr5_2:1080215-1080234 None:intergenic 25.0%
! TGAATTTAGGTCAAATCATA+GGG + chr5_2:1080447-1080466 None:intergenic 25.0%
! ATGAATTTAGGTCAAATCAT+AGG + chr5_2:1080448-1080467 None:intergenic 25.0%
!!! AGTATTGATATTTGTTCCAT+TGG - chr5_2:1080630-1080649 Msa0748070:intron 25.0%
!!! AGTGTTTTAGATTATCTCTT+AGG - chr5_2:1080758-1080777 Msa0748070:intron 25.0%
!!! TTTGGCCTTTTCATAATTTA+AGG - chr5_2:1081019-1081038 Msa0748070:intron 25.0%
! AGCTTCCTTAAATTATGAAA+AGG + chr5_2:1081027-1081046 None:intergenic 25.0%
! CTTAAAATGATAACACGATA+TGG - chr5_2:1081289-1081308 Msa0748070:CDS 25.0%
! TGTACTATCTTACTGTAATA+TGG - chr5_2:1081326-1081345 Msa0748070:intron 25.0%
!!! AGTTTTATTAAAAAGCAGGA+TGG + chr5_2:1081395-1081414 None:intergenic 25.0%
!!! GTTCAGTTTTATTAAAAAGC+AGG + chr5_2:1081399-1081418 None:intergenic 25.0%
! GAGTATAATTAAGGGATATA+AGG - chr5_2:1081722-1081741 Msa0748070:intron 25.0%
! ATAATTAAGGGATATAAGGT+TGG - chr5_2:1081726-1081745 Msa0748070:intron 25.0%
! AAATGTTAGTGTTATGTTGT+AGG + chr5_2:1081817-1081836 None:intergenic 25.0%
!! CAGTTTTTCTTTTTAAACCA+TGG + chr5_2:1081935-1081954 None:intergenic 25.0%
!! TAGTTGCAAAGAATTTTCAA+CGG + chr5_2:1082019-1082038 None:intergenic 25.0%
! TGAAAATTCTTTGCAACTAT+AGG - chr5_2:1082020-1082039 Msa0748070:intron 25.0%
! GAAAATTCTTTGCAACTATA+GGG - chr5_2:1082021-1082040 Msa0748070:intron 25.0%
! AAAATTCTTTGCAACTATAG+GGG - chr5_2:1082022-1082041 Msa0748070:intron 25.0%
! TTCTTCAAAATGAACAGAAA+GGG + chr5_2:1082562-1082581 None:intergenic 25.0%
! ATTCTTCAAAATGAACAGAA+AGG + chr5_2:1082563-1082582 None:intergenic 25.0%
! AAATTGGATAACATCATTAC+AGG + chr5_2:1082610-1082629 None:intergenic 25.0%
! AGTACTTGAAACGTAAAAAT+TGG + chr5_2:1082626-1082645 None:intergenic 25.0%
!! CTCTTTGAAAATATGTTATC+AGG - chr5_2:1082988-1083007 Msa0748070:intron 25.0%
! ATATGTTATCAGGCAAATAA+AGG - chr5_2:1082998-1083017 Msa0748070:intron 25.0%
! TATTCATCATATGGAAAAAC+GGG + chr5_2:1083029-1083048 None:intergenic 25.0%
! CGTTTGAATAGATACTAATA+AGG - chr5_2:1083221-1083240 Msa0748070:intron 25.0%
! GATACTAATAAGGATGATTA+AGG - chr5_2:1083231-1083250 Msa0748070:intron 25.0%
! TTGTCATAATGTACAATTGA+AGG + chr5_2:1083291-1083310 None:intergenic 25.0%
! ATTCAAAATCATTCATTCGA+AGG + chr5_2:1083427-1083446 None:intergenic 25.0%
!! AAGACTTTGAAAAAATCTTG+AGG + chr5_2:1083479-1083498 None:intergenic 25.0%
!! TAGATTACTGATTACTACTA+AGG + chr5_2:1083815-1083834 None:intergenic 25.0%
!! CTTGTTATCAATTGTTTCAA+TGG - chr5_2:1083874-1083893 Msa0748070:CDS 25.0%
! ATTAATCTCTAGATCTTTCA+TGG + chr5_2:1083977-1083996 None:intergenic 25.0%
! AAGATCTAGAGATTAATGAA+TGG - chr5_2:1083980-1083999 Msa0748070:intron 25.0%
! AGATCTAGAGATTAATGAAT+GGG - chr5_2:1083981-1084000 Msa0748070:intron 25.0%
! GAATAATCTAATCAGTAACT+AGG + chr5_2:1084144-1084163 None:intergenic 25.0%
!! TTACTGATTAGATTATTCCA+TGG - chr5_2:1084146-1084165 Msa0748070:intron 25.0%
!!! GATTTTTTTTTTTTGCTCCA+TGG + chr5_2:1084166-1084185 None:intergenic 25.0%
!!! CTTTATTTTGGTCTAAAACA+AGG + chr5_2:1084338-1084357 None:intergenic 25.0%
!!! CCACTAAAGATACTTTATTT+TGG + chr5_2:1084350-1084369 None:intergenic 25.0%
!! CCAAAATAAAGTATCTTTAG+TGG - chr5_2:1084347-1084366 Msa0748070:intron 25.0%
!! TTTTTCTGTTCTATTAAGCT+TGG - chr5_2:1084536-1084555 Msa0748070:intron 25.0%
!! CTCTATCTTTGAACTTATTT+TGG - chr5_2:1084628-1084647 Msa0748070:intron 25.0%
! CAGTTCACTATAAAATATCA+GGG + chr5_2:1084677-1084696 None:intergenic 25.0%
! ACAGTTCACTATAAAATATC+AGG + chr5_2:1084678-1084697 None:intergenic 25.0%
! AAATTATTCAAACCTCTGAT+CGG + chr5_2:1085006-1085025 None:intergenic 25.0%
! ATTCACAAATCCCAATTTAT+TGG + chr5_2:1085031-1085050 None:intergenic 25.0%
GATTATTACACGAAATGCTA+AGG - chr5_2:1076512-1076531 Msa0748070:intron 30.0%
!! CTAGTTTTCATTTCAAGTGT+TGG - chr5_2:1076626-1076645 Msa0748070:CDS 30.0%
! TTTTACACATACAACCAATG+AGG + chr5_2:1076665-1076684 None:intergenic 30.0%
CAAACTAATGTGAAACAAAC+AGG + chr5_2:1076768-1076787 None:intergenic 30.0%
AACCAGTACATATATCTAGA+GGG + chr5_2:1076860-1076879 None:intergenic 30.0%
AAACCAGTACATATATCTAG+AGG + chr5_2:1076861-1076880 None:intergenic 30.0%
ATGCTCTCTTAACATCAAAA+TGG - chr5_2:1077529-1077548 Msa0748070:intron 30.0%
TGCTCTCTTAACATCAAAAT+GGG - chr5_2:1077530-1077549 Msa0748070:intron 30.0%
! TCTTTTCTGTTCCTATTGTT+CGG - chr5_2:1077725-1077744 Msa0748070:intron 30.0%
!! ATGCCGTTTACAAAACATTT+TGG - chr5_2:1077787-1077806 Msa0748070:CDS 30.0%
TTATTGGCAACTAAGATACA+GGG + chr5_2:1077824-1077843 None:intergenic 30.0%
TTTATTGGCAACTAAGATAC+AGG + chr5_2:1077825-1077844 None:intergenic 30.0%
AAGAGAATTACGGATAAAGT+TGG + chr5_2:1077896-1077915 None:intergenic 30.0%
CAGAAAGTCAAAGAGAATTA+CGG + chr5_2:1077906-1077925 None:intergenic 30.0%
! ATTTTACAGCCAAAAGGTTA+TGG + chr5_2:1078131-1078150 None:intergenic 30.0%
AATGTCCAAAACTAATTCTC+TGG + chr5_2:1078419-1078438 None:intergenic 30.0%
AATGAACGAAGGTAATATGA+CGG + chr5_2:1078655-1078674 None:intergenic 30.0%
CGACTCAAAAATATGCAATT+AGG + chr5_2:1078856-1078875 None:intergenic 30.0%
ATCAACAATAACATGCTTTC+TGG + chr5_2:1078938-1078957 None:intergenic 30.0%
AAATTGCGAATTTGCATTGA+TGG + chr5_2:1078969-1078988 None:intergenic 30.0%
ATCGGGAATTTAATATTAGC+GGG - chr5_2:1079013-1079032 Msa0748070:intron 30.0%
AGCCTTTCACTTTATATCTT+TGG + chr5_2:1079046-1079065 None:intergenic 30.0%
AGGTAGAATAATACGAAGTT+TGG - chr5_2:1079143-1079162 Msa0748070:intron 30.0%
GGTAGAATAATACGAAGTTT+GGG - chr5_2:1079144-1079163 Msa0748070:intron 30.0%
GTAGAATAATACGAAGTTTG+GGG - chr5_2:1079145-1079164 Msa0748070:intron 30.0%
!! TTTTTGGTCATATCAATGCA+GGG - chr5_2:1079357-1079376 Msa0748070:CDS 30.0%
!! AAATAATGAGAGAGCATTAG+AGG - chr5_2:1079389-1079408 Msa0748070:CDS 30.0%
! TTTGCTTCATTAAGAGTATG+TGG - chr5_2:1079489-1079508 Msa0748070:intron 30.0%
TATTGACAGAACTATTGATC+AGG - chr5_2:1079783-1079802 Msa0748070:intron 30.0%
!!! GTTTGTTTTTTTAAGGTTCC+TGG - chr5_2:1080055-1080074 Msa0748070:intron 30.0%
! AAAAGAACTTCTTTTCTCTC+AGG + chr5_2:1080097-1080116 None:intergenic 30.0%
! TGAGAGAAAAGAAGTTCTTT+TGG - chr5_2:1080096-1080115 Msa0748070:intron 30.0%
AAGTATAGGATAGTAAAAGC+AGG + chr5_2:1080178-1080197 None:intergenic 30.0%
TATTCACATGGCTTAAGTAT+AGG + chr5_2:1080192-1080211 None:intergenic 30.0%
! TTGATATTGATGACAATGTC+AGG - chr5_2:1080216-1080235 Msa0748070:intron 30.0%
GTGAGTAGTAGTAATCTTAT+GGG - chr5_2:1080315-1080334 Msa0748070:intron 30.0%
TGAGTAGTAGTAATCTTATG+GGG - chr5_2:1080316-1080335 Msa0748070:intron 30.0%
GATAACTAGTCACAGAAAAA+TGG + chr5_2:1080551-1080570 None:intergenic 30.0%
!! ATATATTTAGTGATGGGCTA+AGG - chr5_2:1080587-1080606 Msa0748070:intron 30.0%
!! TATATTTAGTGATGGGCTAA+GGG - chr5_2:1080588-1080607 Msa0748070:intron 30.0%
TGGAAGCAATGATATTAAGT+GGG + chr5_2:1081442-1081461 None:intergenic 30.0%
ATGGAAGCAATGATATTAAG+TGG + chr5_2:1081443-1081462 None:intergenic 30.0%
TAAGAATGTTAGATGGCATT+TGG - chr5_2:1081525-1081544 Msa0748070:intron 30.0%
AAATTCTTTGCAACTATAGG+GGG - chr5_2:1082023-1082042 Msa0748070:intron 30.0%
GTTTATCCTGAGAAATTTGA+CGG - chr5_2:1082474-1082493 Msa0748070:intron 30.0%
ATAACATCATTACAGGTGAT+GGG + chr5_2:1082603-1082622 None:intergenic 30.0%
!! TTACGTTTCAAGTACTTTTC+AGG - chr5_2:1082630-1082649 Msa0748070:intron 30.0%
TGAATAACTTGAGAATGCTT+GGG - chr5_2:1082686-1082705 Msa0748070:intron 30.0%
TCTTAAGTTTGATATCCAGA+AGG - chr5_2:1082750-1082769 Msa0748070:intron 30.0%
TAGAAATTACCTTTACCTTC+TGG + chr5_2:1082768-1082787 None:intergenic 30.0%
ATAACCTGTACCTCTATTAT+GGG + chr5_2:1082862-1082881 None:intergenic 30.0%
! AGTGGATACATATTTTGTGT+GGG + chr5_2:1082910-1082929 None:intergenic 30.0%
! AAGTGGATACATATTTTGTG+TGG + chr5_2:1082911-1082930 None:intergenic 30.0%
CACAAAATATGTATCCACTT+AGG - chr5_2:1082911-1082930 Msa0748070:intron 30.0%
ATTCATCATATGGAAAAACG+GGG + chr5_2:1083028-1083047 None:intergenic 30.0%
CAATTGTTTCAATGGTTTAG+TGG - chr5_2:1083882-1083901 Msa0748070:CDS 30.0%
CTTTCATGGAATAAACTTCT+GGG + chr5_2:1083963-1083982 None:intergenic 30.0%
TCTTTCATGGAATAAACTTC+TGG + chr5_2:1083964-1083983 None:intergenic 30.0%
! AGAAAGACATGGTTTTTGAT+AGG - chr5_2:1084004-1084023 Msa0748070:intron 30.0%
AATCTAACAATTGCTTCTGA+TGG - chr5_2:1084189-1084208 Msa0748070:CDS 30.0%
ATCTAACAATTGCTTCTGAT+GGG - chr5_2:1084190-1084209 Msa0748070:CDS 30.0%
CTACTCTACTCATAAATGAA+GGG + chr5_2:1084256-1084275 None:intergenic 30.0%
TCTACTCTACTCATAAATGA+AGG + chr5_2:1084257-1084276 None:intergenic 30.0%
AGAGCAAAAGTTAATCTGAA+AGG - chr5_2:1084383-1084402 Msa0748070:intron 30.0%
TAGAAAGTAATTTCAAGGGT+AGG - chr5_2:1084421-1084440 Msa0748070:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr5_2:1084482-1084501 None:intergenic 30.0%
GATATCAATAGAGTTACATG+CGG + chr5_2:1084775-1084794 None:intergenic 30.0%
TTCTAGTGATTTCAAGAAGA+TGG - chr5_2:1084943-1084962 Msa0748070:intron 30.0%
TCTAGTGATTTCAAGAAGAT+GGG - chr5_2:1084944-1084963 Msa0748070:intron 30.0%
CAATGAATACAAATAGTCGT+TGG + chr5_2:1084970-1084989 None:intergenic 30.0%
CGACTATTTGTATTCATTGT+CGG - chr5_2:1084971-1084990 Msa0748070:intron 30.0%
AATTATTCAAACCTCTGATC+GGG + chr5_2:1085005-1085024 None:intergenic 30.0%
! CTTCTCGTTTTCTTATCATT+TGG - chr5_2:1085056-1085075 Msa0748070:intron 30.0%
ATGCTTTAATCTTCAGCTAA+GGG - chr5_2:1085088-1085107 Msa0748070:intron 30.0%
CTGAATAGGGAAATTATTCT+AGG - chr5_2:1085134-1085153 Msa0748070:intron 30.0%
AAAACGGCTATTCCAAATTA+CGG + chr5_2:1085235-1085254 None:intergenic 30.0%
!!! CAATTCTGGTTTTGTCAAAA+CGG + chr5_2:1085251-1085270 None:intergenic 30.0%
ATGCTAAGGTCAACAAAAAC+AGG - chr5_2:1076526-1076545 Msa0748070:intron 35.0%
TGCTAAGGTCAACAAAAACA+GGG - chr5_2:1076527-1076546 Msa0748070:intron 35.0%
!! ACATACCTTCCAAGTTGATT+TGG + chr5_2:1076557-1076576 None:intergenic 35.0%
TTCCCTCTAGATATATGTAC+TGG - chr5_2:1076855-1076874 Msa0748070:intron 35.0%
AAAACCGAATAATGCGAACT+GGG - chr5_2:1076963-1076982 Msa0748070:intron 35.0%
CCATAATTATGCCACTAAGT+GGG - chr5_2:1077066-1077085 Msa0748070:intron 35.0%
CATAATTATGCCACTAAGTG+GGG - chr5_2:1077067-1077086 Msa0748070:intron 35.0%
TAGATATGCATGCATGTTTG+TGG - chr5_2:1077175-1077194 Msa0748070:intron 35.0%
ACATATGAGTGAACTGTTGA+AGG - chr5_2:1077229-1077248 Msa0748070:intron 35.0%
TTGCCTGTAGGTACTAATAA+TGG - chr5_2:1077334-1077353 Msa0748070:intron 35.0%
TGTCCATTATTAGTACCTAC+AGG + chr5_2:1077340-1077359 None:intergenic 35.0%
AATGTCTAACTCATGCAAGA+TGG - chr5_2:1077376-1077395 Msa0748070:intron 35.0%
ACATTGACAGTCACTAAAAC+TGG + chr5_2:1077453-1077472 None:intergenic 35.0%
GCTCTCTTAACATCAAAATG+GGG - chr5_2:1077531-1077550 Msa0748070:intron 35.0%
CTCTCTTAACATCAAAATGG+GGG - chr5_2:1077532-1077551 Msa0748070:intron 35.0%
TCTCTTAACATCAAAATGGG+GGG - chr5_2:1077533-1077552 Msa0748070:intron 35.0%
AAAAGGATGCCCAATAAATG+AGG + chr5_2:1077562-1077581 None:intergenic 35.0%
!!! TTTTGGTGCTTTTTTCGTAG+TGG - chr5_2:1077610-1077629 Msa0748070:intron 35.0%
TTGAAGACATACACAAACGA+AGG - chr5_2:1077633-1077652 Msa0748070:intron 35.0%
! ATAGCATCCATTGTTGGTAA+CGG + chr5_2:1077662-1077681 None:intergenic 35.0%
!! ATGTTTTTATCAGACATGGC+TGG - chr5_2:1078253-1078272 Msa0748070:intron 35.0%
GTCACATACTTCCTGTATAA+GGG + chr5_2:1078286-1078305 None:intergenic 35.0%
ATAAGGGGGAAAATCACAAT+AGG + chr5_2:1078558-1078577 None:intergenic 35.0%
! TTGTGATTTTCCCCCTTATT+TGG - chr5_2:1078559-1078578 Msa0748070:intron 35.0%
ATGGTATCATCCAAATAAGG+GGG + chr5_2:1078572-1078591 None:intergenic 35.0%
CATGGTATCATCCAAATAAG+GGG + chr5_2:1078573-1078592 None:intergenic 35.0%
GCATGGTATCATCCAAATAA+GGG + chr5_2:1078574-1078593 None:intergenic 35.0%
TGCATGGTATCATCCAAATA+AGG + chr5_2:1078575-1078594 None:intergenic 35.0%
TGATACCATGCAGATGAATT+TGG - chr5_2:1078583-1078602 Msa0748070:intron 35.0%
ATACTCCAAATTCATCTGCA+TGG + chr5_2:1078591-1078610 None:intergenic 35.0%
AAAGGATACAACCATATACC+TGG + chr5_2:1078628-1078647 None:intergenic 35.0%
! AGGTAATATGACGGAAGAAA+AGG + chr5_2:1078646-1078665 None:intergenic 35.0%
! CCTTCTTTTGTATATGGAGA+AGG + chr5_2:1078797-1078816 None:intergenic 35.0%
CCTTCTCCATATACAAAAGA+AGG - chr5_2:1078794-1078813 Msa0748070:CDS 35.0%
! TGAGTTAGAAGCTTTGATGT+GGG - chr5_2:1078878-1078897 Msa0748070:CDS 35.0%
!! TTTTGATTATTCATGTGCGG+CGG - chr5_2:1078986-1079005 Msa0748070:intron 35.0%
!!! GTTTTTGGTCATATCAATGC+AGG - chr5_2:1079356-1079375 Msa0748070:CDS 35.0%
! AGAGCATTAGAGGATCTATT+TGG - chr5_2:1079399-1079418 Msa0748070:CDS 35.0%
GAGCATTAGAGGATCTATTT+GGG - chr5_2:1079400-1079419 Msa0748070:CDS 35.0%
TGTTGCATGTTTGAATGCAA+TGG - chr5_2:1079446-1079465 Msa0748070:intron 35.0%
AGTCTGAGGAAAATTAGGTA+TGG + chr5_2:1079743-1079762 None:intergenic 35.0%
AACTATTGATCAGGTTTCCT+TGG - chr5_2:1079792-1079811 Msa0748070:intron 35.0%
GGTTTCCTTGGAAAATTTGT+TGG - chr5_2:1079804-1079823 Msa0748070:intron 35.0%
TATGTCCACTCATGTATTAC+AGG + chr5_2:1079907-1079926 None:intergenic 35.0%
ATTCAGCAAATCATGACACA+TGG + chr5_2:1079935-1079954 None:intergenic 35.0%
!! GTGTCATGATTTGCTGAATA+TGG - chr5_2:1079936-1079955 Msa0748070:intron 35.0%
!! TCATGATTTGCTGAATATGG+AGG - chr5_2:1079939-1079958 Msa0748070:intron 35.0%
!! CATGATTTGCTGAATATGGA+GGG - chr5_2:1079940-1079959 Msa0748070:intron 35.0%
! CTTTCTCTCTCTGAGTTTTT+GGG - chr5_2:1080000-1080019 Msa0748070:intron 35.0%
!!! TTTTTTTAAGGTTCCTGGCA+AGG - chr5_2:1080060-1080079 Msa0748070:intron 35.0%
! GAGAAAAGAAGTTCTTTTGG+AGG - chr5_2:1080099-1080118 Msa0748070:intron 35.0%
GGTGAGTAGTAGTAATCTTA+TGG - chr5_2:1080314-1080333 Msa0748070:intron 35.0%
CTTATGGGGATTTCAATTGA+TGG - chr5_2:1080330-1080349 Msa0748070:CDS 35.0%
ACAGGATTCAAATTGTCCAA+TGG + chr5_2:1080649-1080668 None:intergenic 35.0%
ATGAGCTAAGAATAAGAGCT+TGG + chr5_2:1080945-1080964 None:intergenic 35.0%
! AGCTTCGATTTGTAGTTTGA+TGG - chr5_2:1081043-1081062 Msa0748070:intron 35.0%
TAGCAGTGAAATGTCAACAA+GGG - chr5_2:1081150-1081169 Msa0748070:intron 35.0%
! TCAATTTGTTCGCTGTATTG+TGG + chr5_2:1081202-1081221 None:intergenic 35.0%
AAAACTAACCTCTACATGGA+GGG + chr5_2:1081233-1081252 None:intergenic 35.0%
AAAAAGCAGGATGGTAAGAA+GGG + chr5_2:1081386-1081405 None:intergenic 35.0%
TAAAAAGCAGGATGGTAAGA+AGG + chr5_2:1081387-1081406 None:intergenic 35.0%
!!! TGTGGGTTTTGTTCATGTTT+TGG - chr5_2:1081578-1081597 Msa0748070:intron 35.0%
! TAAGGGATATAAGGTTGGTT+TGG - chr5_2:1081731-1081750 Msa0748070:intron 35.0%
! TGTTAATTTTTCCTGCAAGC+TGG + chr5_2:1082131-1082150 None:intergenic 35.0%
!! CAAGCGCAGTTTATTTTCAT+GGG + chr5_2:1082436-1082455 None:intergenic 35.0%
!! ACAAGCGCAGTTTATTTTCA+TGG + chr5_2:1082437-1082456 None:intergenic 35.0%
! TTTTCTCCGTCAAATTTCTC+AGG + chr5_2:1082483-1082502 None:intergenic 35.0%
TGAGAAATTTGACGGAGAAA+AGG - chr5_2:1082482-1082501 Msa0748070:intron 35.0%
GAGAAATTTGACGGAGAAAA+GGG - chr5_2:1082483-1082502 Msa0748070:intron 35.0%
AAAGGGTCAGAATTTGATGA+AGG - chr5_2:1082500-1082519 Msa0748070:intron 35.0%
GATAACATCATTACAGGTGA+TGG + chr5_2:1082604-1082623 None:intergenic 35.0%
GTGAATAACTTGAGAATGCT+TGG - chr5_2:1082685-1082704 Msa0748070:intron 35.0%
GAATAACTTGAGAATGCTTG+GGG - chr5_2:1082687-1082706 Msa0748070:intron 35.0%
AATAACTTGAGAATGCTTGG+GGG - chr5_2:1082688-1082707 Msa0748070:intron 35.0%
!!! GTCAAACGTTTTTTGGTATC+TGG + chr5_2:1082718-1082737 None:intergenic 35.0%
GATACCAAAAAACGTTTGAC+TGG - chr5_2:1082718-1082737 Msa0748070:intron 35.0%
GTTTGATATCCAGAAGGTAA+AGG - chr5_2:1082756-1082775 Msa0748070:intron 35.0%
! ACGCTTTTATCCCATAATAG+AGG - chr5_2:1082849-1082868 Msa0748070:intron 35.0%
! TTATCCCATAATAGAGGTAC+AGG - chr5_2:1082855-1082874 Msa0748070:intron 35.0%
CATAACCTGTACCTCTATTA+TGG + chr5_2:1082863-1082882 None:intergenic 35.0%
TCTTGGTGAAATTTCCTAAG+TGG + chr5_2:1082928-1082947 None:intergenic 35.0%
GAAGGAATACATCATTGTGA+TGG + chr5_2:1083273-1083292 None:intergenic 35.0%
ATCATCATCACTTAGTCTCA+TGG + chr5_2:1083451-1083470 None:intergenic 35.0%
! ATGCGGCTATATAACTTTTG+AGG + chr5_2:1083565-1083584 None:intergenic 35.0%
AAGCACACGTTTCTAAATAG+TGG + chr5_2:1083921-1083940 None:intergenic 35.0%
TAATGAATGGGAGAAAGACA+TGG - chr5_2:1083993-1084012 Msa0748070:intron 35.0%
! TGGTTTTTGATAGGACACTA+TGG - chr5_2:1084013-1084032 Msa0748070:intron 35.0%
AAATCTTCCAAGAGTTTGAC+AGG + chr5_2:1084121-1084140 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr5_2:1084477-1084496 Msa0748070:intron 35.0%
CTATTTGTATTCATTGTCGG+TGG - chr5_2:1084974-1084993 Msa0748070:intron 35.0%
GATGCTTTAATCTTCAGCTA+AGG - chr5_2:1085087-1085106 Msa0748070:intron 35.0%
AGAAAAATAGCACGCAATTC+TGG + chr5_2:1085265-1085284 None:intergenic 35.0%
CGACTATTGTACATCATATC+TGG + chr5_2:1085342-1085361 None:intergenic 35.0%
AGAAGAATTCCGAGTGCTTA+CGG + chr5_2:1076359-1076378 None:intergenic 40.0%
GCTAAGGTCAACAAAAACAG+GGG - chr5_2:1076528-1076547 Msa0748070:intron 40.0%
GGATTCCAAATCAACTTGGA+AGG - chr5_2:1076549-1076568 Msa0748070:intron 40.0%
GGTTTATGCACACTAAATGC+TGG - chr5_2:1076876-1076895 Msa0748070:intron 40.0%
TATGCACACTAAATGCTGGT+AGG - chr5_2:1076880-1076899 Msa0748070:intron 40.0%
!! TGGTTTGCTTGCTCATCATA+AGG + chr5_2:1076944-1076963 None:intergenic 40.0%
! CAGTTCGCATTATTCGGTTT+TGG + chr5_2:1076964-1076983 None:intergenic 40.0%
CAAAACCGAATAATGCGAAC+TGG - chr5_2:1076962-1076981 Msa0748070:intron 40.0%
ATAGCCCAGTTCGCATTATT+CGG + chr5_2:1076970-1076989 None:intergenic 40.0%
GCCATAATTATGCCACTAAG+TGG - chr5_2:1077065-1077084 Msa0748070:intron 40.0%
CCCACTTAGTGGCATAATTA+TGG + chr5_2:1077069-1077088 None:intergenic 40.0%
CAACATGGATCAACATGTAG+CGG + chr5_2:1077094-1077113 None:intergenic 40.0%
AAAGTATGTTTCGGCTACTC+TGG + chr5_2:1077209-1077228 None:intergenic 40.0%
CTTACATGAAACACCTTCGT+CGG + chr5_2:1077411-1077430 None:intergenic 40.0%
!! ATGTGTTACTTCTCTCTGGT+TGG + chr5_2:1077698-1077717 None:intergenic 40.0%
!! TCAGATGTGTTACTTCTCTC+TGG + chr5_2:1077702-1077721 None:intergenic 40.0%
!! ACAGAAAAGTGCCGAACAAT+AGG + chr5_2:1077739-1077758 None:intergenic 40.0%
! TTTTATCAGACATGGCTGGA+AGG - chr5_2:1078257-1078276 Msa0748070:intron 40.0%
TTTATCAGACATGGCTGGAA+GGG - chr5_2:1078258-1078277 Msa0748070:intron 40.0%
CGTCACATACTTCCTGTATA+AGG + chr5_2:1078287-1078306 None:intergenic 40.0%
! CTTATGTGTGTCATTCATCC+TGG - chr5_2:1078320-1078339 Msa0748070:intron 40.0%
TGGACATTAGAAAAGGTCTG+AGG - chr5_2:1078431-1078450 Msa0748070:intron 40.0%
GGACATTAGAAAAGGTCTGA+GGG - chr5_2:1078432-1078451 Msa0748070:intron 40.0%
TCGATTAGGTGCATTAAGAG+AGG - chr5_2:1078462-1078481 Msa0748070:intron 40.0%
! GTATTTTGCCATAGATTGCC+AGG - chr5_2:1078607-1078626 Msa0748070:intron 40.0%
ACCATATACCTGGCAATCTA+TGG + chr5_2:1078618-1078637 None:intergenic 40.0%
! GTGAGTTAGAAGCTTTGATG+TGG - chr5_2:1078877-1078896 Msa0748070:CDS 40.0%
TATAAAGTGAAAGGCTCGCT+AGG - chr5_2:1079050-1079069 Msa0748070:CDS 40.0%
ATAAAGTGAAAGGCTCGCTA+GGG - chr5_2:1079051-1079070 Msa0748070:CDS 40.0%
GTATAGTAAGTCTGTGGCTT+AGG + chr5_2:1079086-1079105 None:intergenic 40.0%
ACAGACGTATAGTAAGTCTG+TGG + chr5_2:1079092-1079111 None:intergenic 40.0%
GAATAATACGAAGTTTGGGG+TGG - chr5_2:1079148-1079167 Msa0748070:intron 40.0%
AATAAGATACGCATGACCAC+AGG + chr5_2:1079184-1079203 None:intergenic 40.0%
GTGGTCATGCGTATCTTATT+AGG - chr5_2:1079184-1079203 Msa0748070:intron 40.0%
GTTAGTAACTAATCCTGCCA+TGG - chr5_2:1079301-1079320 Msa0748070:intron 40.0%
GGTACAAACTAATGAGACCA+TGG + chr5_2:1079321-1079340 None:intergenic 40.0%
! TAGTTTGTACCTTCAGCTTG+AGG - chr5_2:1079330-1079349 Msa0748070:CDS 40.0%
AAAAACACACCTCAAGCTGA+AGG + chr5_2:1079342-1079361 None:intergenic 40.0%
! TTCAGCTTGAGGTGTGTTTT+TGG - chr5_2:1079341-1079360 Msa0748070:CDS 40.0%
AGTCATTGTGTTTGCGTCTA+GGG + chr5_2:1079650-1079669 None:intergenic 40.0%
TAGTCATTGTGTTTGCGTCT+AGG + chr5_2:1079651-1079670 None:intergenic 40.0%
GCTTTGTAGGAACAAGATCA+CGG + chr5_2:1079678-1079697 None:intergenic 40.0%
GTCTCAGTCTGAGGAAAATT+AGG + chr5_2:1079748-1079767 None:intergenic 40.0%
TTGCTCCTGTAATACATGAG+TGG - chr5_2:1079899-1079918 Msa0748070:intron 40.0%
CCAAAAACTCAGAGAGAGAA+AGG + chr5_2:1080002-1080021 None:intergenic 40.0%
! CCTTTCTCTCTCTGAGTTTT+TGG - chr5_2:1079999-1080018 Msa0748070:intron 40.0%
CTACATCAGCAATATGAGCA+TGG + chr5_2:1080153-1080172 None:intergenic 40.0%
CATGCTCATATTGCTGATGT+AGG - chr5_2:1080151-1080170 Msa0748070:intron 40.0%
AAAGCTGCACAAATTCAGCA+TGG - chr5_2:1080286-1080305 Msa0748070:intron 40.0%
CACAAATTCAGCATGGTTCA+AGG - chr5_2:1080293-1080312 Msa0748070:intron 40.0%
AAAAATGGCTGGAAACACTC+GGG + chr5_2:1080536-1080555 None:intergenic 40.0%
GAAAAATGGCTGGAAACACT+CGG + chr5_2:1080537-1080556 None:intergenic 40.0%
ACTAGTCACAGAAAAATGGC+TGG + chr5_2:1080547-1080566 None:intergenic 40.0%
CTAAGGGAACAAATCGTAGA+TGG - chr5_2:1080604-1080623 Msa0748070:intron 40.0%
GTAGCAGTGAAATGTCAACA+AGG - chr5_2:1081149-1081168 Msa0748070:intron 40.0%
AACAAGGGACTTACAGAAGA+TGG - chr5_2:1081165-1081184 Msa0748070:intron 40.0%
CAAAACTAACCTCTACATGG+AGG + chr5_2:1081234-1081253 None:intergenic 40.0%
CGACAAAACTAACCTCTACA+TGG + chr5_2:1081237-1081256 None:intergenic 40.0%
! CCACTTCTTTTATTGCCTCT+GGG - chr5_2:1081354-1081373 Msa0748070:intron 40.0%
ATAAGGTAGCACTTGACATG+CGG + chr5_2:1081680-1081699 None:intergenic 40.0%
AGTTAAGGAGTGGAGTGATA+AGG - chr5_2:1081771-1081790 Msa0748070:CDS 40.0%
! AAAAGTGTAAATGGGTCCCA+TGG - chr5_2:1081915-1081934 Msa0748070:CDS 40.0%
! ACGGAGTCTTGTAAGCTATT+AGG + chr5_2:1082000-1082019 None:intergenic 40.0%
AACAGTATCATTAGGGAGTC+AGG - chr5_2:1082147-1082166 Msa0748070:CDS 40.0%
!!! GTGGAGCAAGATCTTGTTTT+TGG - chr5_2:1082189-1082208 Msa0748070:intron 40.0%
! GCGCTTGTTAATGATTCTTG+CGG - chr5_2:1082449-1082468 Msa0748070:intron 40.0%
!!! CAAGTACTTTTCAGGTAGCA+CGG - chr5_2:1082638-1082657 Msa0748070:intron 40.0%
!!! AGCACCAGTCAAACGTTTTT+TGG + chr5_2:1082725-1082744 None:intergenic 40.0%
AAACGTTTGACTGGTGCTTT+CGG - chr5_2:1082727-1082746 Msa0748070:intron 40.0%
AGGAAATTTCACCAAGACGA+TGG - chr5_2:1082931-1082950 Msa0748070:intron 40.0%
GCAAAATAAAGCCATCGTCT+TGG + chr5_2:1082945-1082964 None:intergenic 40.0%
ATCATATGGAAAAACGGGGT+TGG + chr5_2:1083024-1083043 None:intergenic 40.0%
GATGTATCACACTGACGATT+CGG - chr5_2:1083146-1083165 Msa0748070:CDS 40.0%
TGACGAGTGGATGAATATTC+AGG - chr5_2:1083588-1083607 Msa0748070:intron 40.0%
CACGAGAAATCAACTGTCTA+AGG - chr5_2:1083627-1083646 Msa0748070:intron 40.0%
GAGAAATCAACTGTCTAAGG+AGG - chr5_2:1083630-1083649 Msa0748070:intron 40.0%
GCACTTGGATCATTCAAACA+TGG + chr5_2:1083661-1083680 None:intergenic 40.0%
! TGATGTAAAGTGCCAGCAAA+AGG + chr5_2:1083700-1083719 None:intergenic 40.0%
CGTCTTGATCTCATTGAATG+AGG + chr5_2:1083727-1083746 None:intergenic 40.0%
ATCAAGACGTACACCAAGTT+GGG - chr5_2:1083738-1083757 Msa0748070:intron 40.0%
TGTTTCAATGGTTTAGTGGC+TGG - chr5_2:1083886-1083905 Msa0748070:CDS 40.0%
AAACGTGTGCTTCATTGTCT+GGG - chr5_2:1083929-1083948 Msa0748070:intron 40.0%
! CAAGCTTTATCCACTAAGTG+GGG + chr5_2:1084062-1084081 None:intergenic 40.0%
! CCAAGCTTTATCCACTAAGT+GGG + chr5_2:1084063-1084082 None:intergenic 40.0%
! ACCAAGCTTTATCCACTAAG+TGG + chr5_2:1084064-1084083 None:intergenic 40.0%
TTACTGTCCTGTCAAACTCT+TGG - chr5_2:1084111-1084130 Msa0748070:intron 40.0%
ACAATTGCTTCTGATGGGAT+CGG - chr5_2:1084195-1084214 Msa0748070:CDS 40.0%
! GACAACTTTTGGACAAGATG+AGG + chr5_2:1084471-1084490 None:intergenic 40.0%
AAATATCAGGGTCTGACTCA+AGG + chr5_2:1084665-1084684 None:intergenic 40.0%
AGCTTACTAGAAGGCTGAAT+AGG - chr5_2:1085120-1085139 Msa0748070:intron 40.0%
GCTTACTAGAAGGCTGAATA+GGG - chr5_2:1085121-1085140 Msa0748070:intron 40.0%
TGATCCTGCACAATTCATCA+CGG - chr5_2:1085172-1085191 Msa0748070:intron 40.0%
AATACCGTGATGAATTGTGC+AGG + chr5_2:1085179-1085198 None:intergenic 40.0%
TCCAAATTACGGCACACATT+CGG + chr5_2:1085224-1085243 None:intergenic 40.0%
!! GAGGAGCATCATGTCTATGT+CGG - chr5_2:1076269-1076288 Msa0748070:intron 45.0%
TCTGATTCCTCCTCCTCTTA+CGG - chr5_2:1076294-1076313 Msa0748070:intron 45.0%
CAGGGGATTCCAAATCAACT+TGG - chr5_2:1076545-1076564 Msa0748070:intron 45.0%
GCAAGTTGTCATTGCCTCAT+TGG - chr5_2:1076648-1076667 Msa0748070:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_2:1077121-1077140 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_2:1077122-1077141 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + chr5_2:1077123-1077142 None:intergenic 45.0%
TTCATCGTTTGCTTGCCTGT+AGG - chr5_2:1077322-1077341 Msa0748070:intron 45.0%
!! CGACGAAGGTGTTTCATGTA+AGG - chr5_2:1077409-1077428 Msa0748070:intron 45.0%
AAGGCAACCGTTACCAACAA+TGG - chr5_2:1077652-1077671 Msa0748070:intron 45.0%
! CTCTGGAAATAGGTGAGCTA+AGG + chr5_2:1078402-1078421 None:intergenic 45.0%
GCCATAGATTGCCAGGTATA+TGG - chr5_2:1078614-1078633 Msa0748070:intron 45.0%
TAAAGTGAAAGGCTCGCTAG+GGG - chr5_2:1079052-1079071 Msa0748070:CDS 45.0%
CAAACTAATGAGACCATGGC+AGG + chr5_2:1079317-1079336 None:intergenic 45.0%
GTCAATAATGAGCAACTCGC+AGG + chr5_2:1079770-1079789 None:intergenic 45.0%
! TTTTCTCTCAGGTAGACCTC+CGG + chr5_2:1080086-1080105 None:intergenic 45.0%
TGGAGGATCATGATCCTGTA+TGG - chr5_2:1080116-1080135 Msa0748070:intron 45.0%
GACAATGTCAGGCTAGTGAA+CGG - chr5_2:1080227-1080246 Msa0748070:intron 45.0%
CTAAATTCATTCCCCGCTGT+GGG - chr5_2:1080458-1080477 Msa0748070:intron 45.0%
TTGCCACCATGTGGTGTATT+CGG - chr5_2:1080495-1080514 Msa0748070:intron 45.0%
AGATCACCGAATACACCACA+TGG + chr5_2:1080504-1080523 None:intergenic 45.0%
AAAATGGCTGGAAACACTCG+GGG + chr5_2:1080535-1080554 None:intergenic 45.0%
! GCCACTTCTTTTATTGCCTC+TGG - chr5_2:1081353-1081372 Msa0748070:intron 45.0%
CCCAGAGGCAATAAAAGAAG+TGG + chr5_2:1081357-1081376 None:intergenic 45.0%
TAAGAAGGGAAATTGCCCAG+AGG + chr5_2:1081372-1081391 None:intergenic 45.0%
TCCATCACAATTCTCGCTGA+AGG - chr5_2:1081458-1081477 Msa0748070:CDS 45.0%
TCCTTCAGCGAGAATTGTGA+TGG + chr5_2:1081462-1081481 None:intergenic 45.0%
CACTTGACATGCGGAGAAAA+TGG + chr5_2:1081671-1081690 None:intergenic 45.0%
!! GGGATATAAGGTTGGTTTGG+TGG - chr5_2:1081734-1081753 Msa0748070:intron 45.0%
!! TAAGGTTGGTTTGGTGGATG+AGG - chr5_2:1081740-1081759 Msa0748070:intron 45.0%
TAAGGAGTGGAGTGATAAGG+AGG - chr5_2:1081774-1081793 Msa0748070:CDS 45.0%
TGGAGTGATAAGGAGGTTGA+GGG - chr5_2:1081781-1081800 Msa0748070:CDS 45.0%
AAACAAGATCTTGCTCCACC+TGG + chr5_2:1082188-1082207 None:intergenic 45.0%
AGGTGTGATTTCTGTCTTGC+TGG - chr5_2:1082520-1082539 Msa0748070:intron 45.0%
GGTGTGATTTCTGTCTTGCT+GGG - chr5_2:1082521-1082540 Msa0748070:intron 45.0%
! GTAAAAAGAAGCGTGCTGCA+AGG - chr5_2:1082788-1082807 Msa0748070:intron 45.0%
GTCCTGGGGAAGAAGAAAAA+TGG - chr5_2:1082818-1082837 Msa0748070:intron 45.0%
!!! TGCCATTTTTCTTCTTCCCC+AGG + chr5_2:1082823-1082842 None:intergenic 45.0%
TCATCCACTCGTCACATATG+CGG + chr5_2:1083582-1083601 None:intergenic 45.0%
GATCAAGACGTACACCAAGT+TGG - chr5_2:1083737-1083756 Msa0748070:intron 45.0%
!! GCTCTGATGATGGGTATTCA+AGG - chr5_2:1083773-1083792 Msa0748070:intron 45.0%
GAAACGTGTGCTTCATTGTC+TGG - chr5_2:1083928-1083947 Msa0748070:intron 45.0%
AACGTGTGCTTCATTGTCTG+GGG - chr5_2:1083930-1083949 Msa0748070:intron 45.0%
CTTTATCCACTAAGTGGGGT+CGG + chr5_2:1084058-1084077 None:intergenic 45.0%
! CCCACTTAGTGGATAAAGCT+TGG - chr5_2:1084060-1084079 Msa0748070:intron 45.0%
CTTGCCACAAGCTTACTAGA+AGG - chr5_2:1085111-1085130 Msa0748070:intron 45.0%
TCAGCCTTCTAGTAAGCTTG+TGG + chr5_2:1085118-1085137 None:intergenic 45.0%
CACACATTCGGCACAGAAAA+AGG + chr5_2:1085212-1085231 None:intergenic 45.0%
!! AAATATTTAATATTTAAAGA+TGG - chr5_2:1077010-1077029 Msa0748070:intron 5.0%
!! TAACTAAAATATTAAAAAAT+AGG - chr5_2:1079123-1079142 Msa0748070:intron 5.0%
GAAGAGAGAGAGAGAGAGAG+AGG - chr5_2:1076250-1076269 Msa0748070:CDS 50.0%
CGAACTGGGCTATGTGCAAT+TGG - chr5_2:1076977-1076996 Msa0748070:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_2:1077117-1077136 None:intergenic 50.0%
TATGTTTCGGCTACTCTGGC+TGG + chr5_2:1077205-1077224 None:intergenic 50.0%
ATGGCTGATATCACCGACGA+AGG - chr5_2:1077395-1077414 Msa0748070:intron 50.0%
!! TGGGGGGCATCCTCATTTAT+TGG - chr5_2:1077549-1077568 Msa0748070:intron 50.0%
!! GGGGGGCATCCTCATTTATT+GGG - chr5_2:1077550-1077569 Msa0748070:intron 50.0%
TTCATGTGCGGCGGAAGAAT+CGG - chr5_2:1078995-1079014 Msa0748070:intron 50.0%
GCATGACCACAGGTATGACA+TGG + chr5_2:1079174-1079193 None:intergenic 50.0%
TGTGTTTGCGTCTAGGGACT+TGG + chr5_2:1079644-1079663 None:intergenic 50.0%
!! GTTCCTACAAAGCTTGCTGC+TGG - chr5_2:1079685-1079704 Msa0748070:intron 50.0%
! ACTCCAGCAGCAAGCTTTGT+AGG + chr5_2:1079691-1079710 None:intergenic 50.0%
!! AAAGCTTGCTGCTGGAGTCT+GGG - chr5_2:1079693-1079712 Msa0748070:intron 50.0%
! TTTAAGGTTCCTGGCAAGGC+CGG - chr5_2:1080064-1080083 Msa0748070:intron 50.0%
CCACAGCGGGGAATGAATTT+AGG + chr5_2:1080460-1080479 None:intergenic 50.0%
CCTAAATTCATTCCCCGCTG+TGG - chr5_2:1080457-1080476 Msa0748070:intron 50.0%
! GTCAACTTTTACCCACAGCG+GGG + chr5_2:1080472-1080491 None:intergenic 50.0%
! CGTCAACTTTTACCCACAGC+GGG + chr5_2:1080473-1080492 None:intergenic 50.0%
! GCGTCAACTTTTACCCACAG+CGG + chr5_2:1080474-1080493 None:intergenic 50.0%
TCACCGAATACACCACATGG+TGG + chr5_2:1080501-1080520 None:intergenic 50.0%
CAAACTCTCCCTCCATGTAG+AGG - chr5_2:1081222-1081241 Msa0748070:intron 50.0%
!! TTGGTTTGGTGGATGAGGTG+TGG - chr5_2:1081745-1081764 Msa0748070:intron 50.0%
!! TGGTTTGGTGGATGAGGTGT+GGG - chr5_2:1081746-1081765 Msa0748070:intron 50.0%
GATGAGGTGTGGGGAAGTTA+AGG - chr5_2:1081756-1081775 Msa0748070:intron 50.0%
GTGGAGTGATAAGGAGGTTG+AGG - chr5_2:1081780-1081799 Msa0748070:CDS 50.0%
GTCTTCTTGATCCAGCTTGC+AGG - chr5_2:1082117-1082136 Msa0748070:CDS 50.0%
TCATTAGGGAGTCAGGACTG+CGG - chr5_2:1082154-1082173 Msa0748070:CDS 50.0%
GTTGTGTCCTGCGTAAAAGC+GGG + chr5_2:1082414-1082433 None:intergenic 50.0%
GGTTGTGTCCTGCGTAAAAG+CGG + chr5_2:1082415-1082434 None:intergenic 50.0%
GGTAGCACGGTTAACAGATG+AGG - chr5_2:1082651-1082670 Msa0748070:intron 50.0%
CTGCAAGGATAGAACGTCCT+GGG - chr5_2:1082803-1082822 Msa0748070:intron 50.0%
TGCAAGGATAGAACGTCCTG+GGG - chr5_2:1082804-1082823 Msa0748070:intron 50.0%
ATAGCCGCATATGTGACGAG+TGG - chr5_2:1083575-1083594 Msa0748070:intron 50.0%
GAGCTGTGGAAAGTTGCACT+TGG + chr5_2:1083676-1083695 None:intergenic 50.0%
! TTCCACAGCTCACCTTTTGC+TGG - chr5_2:1083685-1083704 Msa0748070:intron 50.0%
! TCTAAAACAAGGCCGTCGCT+TGG + chr5_2:1084327-1084346 None:intergenic 50.0%
GCCGAATGTGTGCCGTAATT+TGG - chr5_2:1085220-1085239 Msa0748070:CDS 50.0%
GATTCCTCCTCCTCTTACGG+TGG - chr5_2:1076297-1076316 Msa0748070:intron 55.0%
GTAATTGGCGCCACCGTAAG+AGG + chr5_2:1076310-1076329 None:intergenic 55.0%
TACACGCGACCGTAAGCACT+CGG - chr5_2:1076347-1076366 Msa0748070:intron 55.0%
!! ATGTAGCGGACCCCACTTAG+TGG + chr5_2:1077080-1077099 None:intergenic 55.0%
ACTAAGTGGGGTCGGCAACA+TGG + chr5_2:1077109-1077128 None:intergenic 55.0%
ATGTTGCCGACCCCACTTAG+TGG - chr5_2:1077108-1077127 Msa0748070:intron 55.0%
TGTTGCCGACCCCACTTAGT+GGG - chr5_2:1077109-1077128 Msa0748070:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_2:1077115-1077134 Msa0748070:intron 55.0%
CTGGAAGGGCTCCCTTATAC+AGG - chr5_2:1078272-1078291 Msa0748070:intron 55.0%
!! CTGAGGGTGTCGTCTCGATT+AGG - chr5_2:1078448-1078467 Msa0748070:intron 55.0%
TCATGTGCGGCGGAAGAATC+GGG - chr5_2:1078996-1079015 Msa0748070:intron 55.0%
!! CAAAGCTTGCTGCTGGAGTC+TGG - chr5_2:1079692-1079711 Msa0748070:intron 55.0%
AACTCGCAGGTCTCAGTCTG+AGG + chr5_2:1079757-1079776 None:intergenic 55.0%
GTTGACGCTTTGCCACCATG+TGG - chr5_2:1080486-1080505 Msa0748070:intron 55.0%
!! GGTTTGGTGGATGAGGTGTG+GGG - chr5_2:1081747-1081766 Msa0748070:intron 55.0%
GGTGTGGGGAAGTTAAGGAG+TGG - chr5_2:1081761-1081780 Msa0748070:intron 55.0%
CATTAGGGAGTCAGGACTGC+GGG - chr5_2:1082155-1082174 Msa0748070:CDS 55.0%
!! ACATGTGCCCGCTTTTACGC+AGG - chr5_2:1082404-1082423 Msa0748070:intron 55.0%
GCTGCAAGGATAGAACGTCC+TGG - chr5_2:1082802-1082821 Msa0748070:intron 55.0%
TGCCAGCAAAAGGTGAGCTG+TGG + chr5_2:1083690-1083709 None:intergenic 55.0%
! AAACCGCGAGGCTCTGATGA+TGG - chr5_2:1083763-1083782 Msa0748070:intron 55.0%
! AACCGCGAGGCTCTGATGAT+GGG - chr5_2:1083764-1083783 Msa0748070:intron 55.0%
TACCCATCATCAGAGCCTCG+CGG + chr5_2:1083769-1083788 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_2:1084049-1084068 Msa0748070:intron 55.0%
CTTGTCGGCACGCAGTGATT+CGG - chr5_2:1084907-1084926 Msa0748070:intron 55.0%
!! CACGCAGTGATTCGGTGCTT+AGG - chr5_2:1084915-1084934 Msa0748070:intron 55.0%
ATTGGCGCCACCGTAAGAGG+AGG + chr5_2:1076307-1076326 None:intergenic 60.0%
GGGTGGCCATGTCATACCTG+TGG - chr5_2:1079165-1079184 Msa0748070:intron 60.0%
GCAGCACGAAAGCGGATGGA+AGG + chr5_2:1079622-1079641 None:intergenic 60.0%
CTTGGCAGCACGAAAGCGGA+TGG + chr5_2:1079626-1079645 None:intergenic 60.0%
GGGACTTGGCAGCACGAAAG+CGG + chr5_2:1079630-1079649 None:intergenic 60.0%
TGGCGAAGCTCGAGCCATAC+AGG + chr5_2:1080133-1080152 None:intergenic 60.0%
GAGTCAGGACTGCGGGAACT+GGG - chr5_2:1082162-1082181 Msa0748070:CDS 60.0%
! CCTCGCGGTTTTGCCCAACT+TGG + chr5_2:1083754-1083773 None:intergenic 60.0%
! CCAAGTTGGGCAAAACCGCG+AGG - chr5_2:1083751-1083770 Msa0748070:intron 60.0%
CACTTCCCACGACCAAGCGA+CGG - chr5_2:1084312-1084331 Msa0748070:intron 60.0%
AAGGTTCCTGGCAAGGCCGG+AGG - chr5_2:1080067-1080086 Msa0748070:intron 65.0%
GGAGTCAGGACTGCGGGAAC+TGG - chr5_2:1082161-1082180 Msa0748070:CDS 65.0%
CAAGGCCGTCGCTTGGTCGT+GGG + chr5_2:1084320-1084339 None:intergenic 65.0%
ACAAGGCCGTCGCTTGGTCG+TGG + chr5_2:1084321-1084340 None:intergenic 65.0%
GGCGCCACCGTAAGAGGAGG+AGG + chr5_2:1076304-1076323 None:intergenic 70.0%
GGTAGACCTCCGGCCTTGCC+AGG + chr5_2:1080076-1080095 None:intergenic 70.0%
AGGACTGCGGGAACTGGGCC+AGG - chr5_2:1082167-1082186 Msa0748070:CDS 70.0%
ACTGCGGGAACTGGGCCAGG+TGG - chr5_2:1082170-1082189 Msa0748070:CDS 70.0%
CGGTGGCGCAACCCGATCAG+AGG - chr5_2:1084991-1085010 Msa0748070:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1076200 1085367 1076200 ID=Msa0748070;Name=Msa0748070
chr5_2 mRNA 1076200 1085367 1076200 ID=Msa0748070-mRNA-1;Parent=Msa0748070;Name=Msa0748070-mRNA-1;_AED=0.15;_eAED=0.15;_QI=79|0.94|0.95|1|0.89|0.9|20|19|668
chr5_2 exon 1076200 1076272 1076200 ID=Msa0748070-mRNA-1:exon:274;Parent=Msa0748070-mRNA-1
chr5_2 exon 1076374 1076463 1076374 ID=Msa0748070-mRNA-1:exon:273;Parent=Msa0748070-mRNA-1
chr5_2 exon 1076555 1076645 1076555 ID=Msa0748070-mRNA-1:exon:272;Parent=Msa0748070-mRNA-1
chr5_2 exon 1077773 1077957 1077773 ID=Msa0748070-mRNA-1:exon:271;Parent=Msa0748070-mRNA-1
chr5_2 exon 1078697 1078915 1078697 ID=Msa0748070-mRNA-1:exon:270;Parent=Msa0748070-mRNA-1
chr5_2 exon 1079046 1079141 1079046 ID=Msa0748070-mRNA-1:exon:269;Parent=Msa0748070-mRNA-1
chr5_2 exon 1079310 1079435 1079310 ID=Msa0748070-mRNA-1:exon:268;Parent=Msa0748070-mRNA-1
chr5_2 exon 1080324 1080420 1080324 ID=Msa0748070-mRNA-1:exon:267;Parent=Msa0748070-mRNA-1
chr5_2 exon 1081253 1081329 1081253 ID=Msa0748070-mRNA-1:exon:266;Parent=Msa0748070-mRNA-1
chr5_2 exon 1081399 1081497 1081399 ID=Msa0748070-mRNA-1:exon:265;Parent=Msa0748070-mRNA-1
chr5_2 exon 1081586 1081669 1081586 ID=Msa0748070-mRNA-1:exon:264;Parent=Msa0748070-mRNA-1
chr5_2 exon 1081763 1081954 1081763 ID=Msa0748070-mRNA-1:exon:263;Parent=Msa0748070-mRNA-1
chr5_2 exon 1082064 1082189 1082064 ID=Msa0748070-mRNA-1:exon:262;Parent=Msa0748070-mRNA-1
chr5_2 exon 1082939 1082971 1082939 ID=Msa0748070-mRNA-1:exon:261;Parent=Msa0748070-mRNA-1
chr5_2 exon 1083084 1083180 1083084 ID=Msa0748070-mRNA-1:exon:260;Parent=Msa0748070-mRNA-1
chr5_2 exon 1083271 1083321 1083271 ID=Msa0748070-mRNA-1:exon:259;Parent=Msa0748070-mRNA-1
chr5_2 exon 1083859 1083937 1083859 ID=Msa0748070-mRNA-1:exon:258;Parent=Msa0748070-mRNA-1
chr5_2 exon 1084151 1084223 1084151 ID=Msa0748070-mRNA-1:exon:257;Parent=Msa0748070-mRNA-1
chr5_2 exon 1084997 1085055 1084997 ID=Msa0748070-mRNA-1:exon:256;Parent=Msa0748070-mRNA-1
chr5_2 exon 1085210 1085367 1085210 ID=Msa0748070-mRNA-1:exon:255;Parent=Msa0748070-mRNA-1
chr5_2 five_prime_UTR 1085289 1085367 1085289 ID=Msa0748070-mRNA-1:five_prime_utr;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1085210 1085288 1085210 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1084997 1085055 1084997 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1084151 1084223 1084151 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1083859 1083937 1083859 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1083271 1083321 1083271 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1083084 1083180 1083084 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1082939 1082971 1082939 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1082064 1082189 1082064 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1081763 1081954 1081763 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1081586 1081669 1081586 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1081399 1081497 1081399 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1081253 1081329 1081253 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1080324 1080420 1080324 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1079310 1079435 1079310 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1079046 1079141 1079046 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1078697 1078915 1078697 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1077773 1077957 1077773 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1076555 1076645 1076555 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1076374 1076463 1076374 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 CDS 1076219 1076272 1076219 ID=Msa0748070-mRNA-1:cds;Parent=Msa0748070-mRNA-1
chr5_2 three_prime_UTR 1076200 1076218 1076200 ID=Msa0748070-mRNA-1:three_prime_utr;Parent=Msa0748070-mRNA-1
Gene Sequence

>Msa0748070

ATGTCTATGTCGGATTCTGATTCCTCCTCCTCTTACGGTGGCGCCAATTACCAAAATTTCAAGCAAATTACACGCGACCGATTATTACACGAAATGCTAAGGTCAACAAAAACAGGGGATTCCAAATCAACTTGGAAGGTACTAATAATGGACAAACTTACTATAAAGATAATGTCTAACTCATGCAAGATGGCTGATATCACCGACGAAGTGGTTGAAGACATACACAAACGAAGGCAACCGTTACCAACAATGGATGCTATATATTTCATACAACCAACCAGAGAGAATATAATTATGTTTTTATCAGACATGGCTGGAAGGGCTCCCTTATACAGGAAGGCATTTGTTTTCCTTAGCTCACCTATTTCCAGAGAATTAGTTTTGGACATTAGAAAAGGTCTGAGGGTGTCGTCTCGATTAGGTGCATTAAGAGAGATGAATTTGGAGTATTTTGCCATAGATTGCCAGGGTTTCATCACAAATAATGAGAGAGCATTAGAGGATCTATTTGGGAATGAAGAGAATAATCGTAAAGGTGTTGCATGTTTGAATGCAATGGCAACGCGAATTGCTACAGTTTTTGCTTCATTAAGAGAATTTCCTTCCATCCGCTTTCGTGCTGCCAAGTCCCTAGACGCAAACACAATGACTACATTCCGTGATCTTGTTCCTACAAAGCTTGCTGCTGGAGTCTGGGACTGTCTTACAAAATATAAAAAAACCATACCTAATTTTCCTCAGACTGAGACCTGCGAGTTGCTCATTATTGACAGAACTATTGATCAGATTGCTCCTGTAATACATGAGTGGACATACGATGCCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCACGAAGTTCCTGGCAAGGCCGGAGGTCTACCTGAGAGAAAAGAAGTTCTTTTGGAGGATCATGATCCTGTATGGCTCGAGCTTCGCCATGCTCATATTGCTGATGCTAGTGAACGGCTGCATGCGAAGATGACTAGCTTCATTTCAAAGAACAAAGCTGCACAAATTCAGCATGGTTCAAGAAGTAGCAGTGAAATGTCAACAAGGGACTTACAGAAGATGGTTCAAGCACTTCCACAATACAGCGAACAAATTGACAAACTCTCCCTCCATGTAGAGCTTGCAGGAAAAATTAACAGTATCATTAGGGAGTCAGGACTGCGGGAACTGGGCCAGGTGGAGCAAGATCTTGTTTTTGGAGATGCAACAATGAAAGATGTGATCAAATTTTTGACTATGAAAGAAGACACAACCCATGAAAATAAACTGCGCTTGTTAATGATTCTTGCGGCTGTTTATCCTGAGAAATTTGACGGAGAAAAGGGTCAGAATTTGATGAAGGTAGCACGGTTAACAGATGAGGATATGACTATTGTGAATAACTTGAGAATGCTTGGGGGACAACCAGATACCAAAAAACGTTTGACTGGTGCTTTCGGTCTTAAGTTTGATATCCAGAAGGTAAAGGTAATTTCTAGTAAAAAGAAGCGTGCTGCAAGGATAGAACGTCCTGGGGAAGAAGAAAAATGGCAACTATCACGCTTTTATCCCATAATAGAGGAACTCATTGAAAAACTCACGAGAAATCAACTGTCTAAGGAGGATTATCCATGTTTGAATGATCCAAGTGCAACTTTCCACAGCTCACCTTTTGCTGGCACTTTACATCAAAATCCTCATTCAATGAGATCAAGACGTACACCAAGTTGGGCAAAACCGCGAGGCTCTGATGATGGGTATTCAAGTGATTCGGTGCTTAGGCATGCTTCTAGTGATTTCAAGAAGATGGGCCAACGACTATTTGTATTCATTGTCGGTGGCGCAACCCGATCAGAGCTAAGGGCTTGCCACAAGCTTACTAGAAGGCTGAATAGGGAAATTATTCTAGGTTCATCGAGTCTTGATGATCCTGCACAATTCATCACGAAATTGAAGATGCTAACAACACATGAACTTACATTAGATGATATCCAGATATGA

Protein sequence

>Msa0748070

MSMSDSDSSSSYGGANYQNFKQITRDRLLHEMLRSTKTGDSKSTWKVLIMDKLTIKIMSNSCKMADITDEVVEDIHKRRQPLPTMDAIYFIQPTRENIIMFLSDMAGRAPLYRKAFVFLSSPISRELVLDIRKGLRVSSRLGALREMNLEYFAIDCQGFITNNERALEDLFGNEENNRKGVACLNAMATRIATVFASLREFPSIRFRAAKSLDANTMTTFRDLVPTKLAAGVWDCLTKYKKTIPNFPQTETCELLIIDRTIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKAGGLPERKEVLLEDHDPVWLELRHAHIADASERLHAKMTSFISKNKAAQIQHGSRSSSEMSTRDLQKMVQALPQYSEQIDKLSLHVELAGKINSIIRESGLRELGQVEQDLVFGDATMKDVIKFLTMKEDTTHENKLRLLMILAAVYPEKFDGEKGQNLMKVARLTDEDMTIVNNLRMLGGQPDTKKRLTGAFGLKFDIQKVKVISSKKKRAARIERPGEEEKWQLSRFYPIIEELIEKLTRNQLSKEDYPCLNDPSATFHSSPFAGTLHQNPHSMRSRRTPSWAKPRGSDDGYSSDSVLRHASSDFKKMGQRLFVFIVGGATRSELRACHKLTRRLNREIILGSSSLDDPAQFITKLKMLTTHELTLDDIQI*