AlfalfaGEDB | Msa0830530

M. sativa cultivar zhongmu-4 / Msa0830530

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830530	XP_024639082.1	93.963	762	40	1	1	756	1	762	0.0	1477

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830530	sp\|Q9C9I6\|PP116_ARATH	54.882	676	300	4	51	722	6	680	0.0	751

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830530	G7K7Y9	93.963	762	40	1	1	756	1	762	0.0	1477

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0830530	-0.809747	1.624091e-50	-8.615850e-47
Msa0001790	Msa0830530	0.802383	5.758073e-49	-8.615850e-47
Msa0002230	Msa0830530	0.821715	3.484757e-53	-8.615850e-47
Msa0003890	Msa0830530	0.815148	1.072627e-51	-8.615850e-47
Msa0006110	Msa0830530	0.855200	7.398852e-62	-8.615850e-47
Msa0007080	Msa0830530	0.805620	1.222739e-49	-8.615850e-47
Msa0008220	Msa0830530	0.802053	6.734018e-49	-8.615850e-47
Msa0011170	Msa0830530	0.800235	1.585363e-48	-8.615850e-47
Msa0011500	Msa0830530	0.812964	3.252495e-51	-8.615850e-47
Msa0014570	Msa0830530	0.803213	3.881414e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830530	MtrunA17_Chr5g0396241	93.963	762	40	1	1	756	1	762	0.0	1477
Msa0830530	MtrunA17_Chr1g0166001	34.512	707	434	12	36	721	79	777	4.47e-130	408
Msa0830530	MtrunA17_Chr4g0004081	32.029	690	401	7	60	706	20	684	8.57e-119	374
Msa0830530	MtrunA17_Chr4g0063341	33.697	641	410	8	87	720	29	661	4.55e-118	373
Msa0830530	MtrunA17_Chr6g0461581	31.073	634	399	4	89	721	388	984	3.47e-114	371
Msa0830530	MtrunA17_Chr6g0461581	28.460	513	324	8	92	601	188	660	1.92e-56	209
Msa0830530	MtrunA17_Chr6g0461581	26.230	488	304	7	62	540	465	905	1.80e-44	173
Msa0830530	MtrunA17_Chr6g0461581	23.600	500	308	8	178	608	72	566	2.00e-35	145
Msa0830530	MtrunA17_Chr7g0246581	32.253	617	374	8	96	708	143	719	1.82e-113	363
Msa0830530	MtrunA17_Chr7g0246581	26.728	434	277	5	171	602	117	511	3.40e-43	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830530	AT1G71490.1	54.882	676	300	4	51	722	6	680	0.0	751
Msa0830530	AT1G22830.1	48.964	676	329	9	15	685	17	681	0.0	652
Msa0830530	AT1G22830.2	48.964	676	329	9	15	685	17	681	0.0	652
Msa0830530	AT1G08070.1	34.953	638	404	5	87	720	34	664	1.73e-130	406
Msa0830530	AT1G08070.2	36.232	552	347	3	170	720	13	560	4.34e-126	391
Msa0830530	AT1G08070.2	27.532	385	212	4	92	443	36	386	3.15e-39	155
Msa0830530	AT5G16860.1	35.000	640	402	6	95	721	136	774	1.55e-125	396
Msa0830530	AT5G16860.1	30.981	581	297	15	100	624	39	571	1.91e-62	226
Msa0830530	AT5G16860.1	23.694	536	285	11	91	576	234	695	2.12e-29	125
Msa0830530	AT3G12770.1	32.097	620	384	4	103	721	35	618	2.47e-112	357

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Find 218 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAATTGTGTGGTCC+TGG	0.497881	5_4:+3586395	Msa0830530:three_prime_UTR
AAAACTACAAAAGTAAATGA+GGG	0.615670	5_4:-3585911	None:intergenic
AAAAGTGTATTCCAAATTCA+TGG	0.310310	5_4:+3581541	Msa0830530:CDS
AAAATACAGTGATTGGGGAA+TGG	0.515205	5_4:+3583314	Msa0830530:CDS
AAACAATGACCTGAATGATC+AGG	0.495888	5_4:-3583364	None:intergenic
AAAGCAAAGGAGGTTATCAC+AGG	0.532659	5_4:+3583229	Msa0830530:CDS
AAAGCGTGAAGAACAGTTCA+AGG	0.483033	5_4:+3582841	Msa0830530:CDS
AAAGGACTCCTGGTTGTGCT+TGG	0.406887	5_4:+3583470	Msa0830530:CDS
AAATACAGTGATTGGGGAAT+GGG	0.444323	5_4:+3583315	Msa0830530:CDS
AAATCTCAAGTCTTTATCAC+AGG	0.515399	5_4:+3581782	Msa0830530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTAGTTGAAGAAATGAG+TGG	-	chr5_4:3581597-3581616	None:intergenic	30.0%
TGCATTTGATAAGTGATTGT+GGG	-	chr5_4:3581673-3581692	None:intergenic	30.0%
ATGCATTTGATAAGTGATTG+TGG	-	chr5_4:3581674-3581693	None:intergenic	30.0%
AAATCTCAAGTCTTTATCAC+AGG	+	chr5_4:3581782-3581801	Msa0830530:CDS	30.0%
AATCTCAAGTCTTTATCACA+GGG	+	chr5_4:3581783-3581802	Msa0830530:CDS	30.0%
TCATGCTCATATTATCTCAT+TGG	+	chr5_4:3581815-3581834	Msa0830530:CDS	30.0%
CATGCTCATATTATCTCATT+GGG	+	chr5_4:3581816-3581835	Msa0830530:CDS	30.0%
TTATAGGAGAATGTTGAGTA+AGG	+	chr5_4:3582013-3582032	Msa0830530:CDS	30.0%
TATAGGAGAATGTTGAGTAA+GGG	+	chr5_4:3582014-3582033	Msa0830530:CDS	30.0%
GAGTTATTGGATTATGATAG+TGG	+	chr5_4:3582086-3582105	Msa0830530:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	3581492	3586530	3581492	ID=Msa0830530;Name=Msa0830530
chr5_4	mRNA	3581492	3586530	3581492	ID=Msa0830530-mRNA-1;Parent=Msa0830530;Name=Msa0830530-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.66\|0.75\|1\|0.66\|0.75\|4\|630\|789
chr5_4	exon	3581492	3583759	3581492	ID=Msa0830530-mRNA-1:exon:1364;Parent=Msa0830530-mRNA-1
chr5_4	exon	3584644	3584683	3584644	ID=Msa0830530-mRNA-1:exon:1365;Parent=Msa0830530-mRNA-1
chr5_4	exon	3585726	3585995	3585726	ID=Msa0830530-mRNA-1:exon:1366;Parent=Msa0830530-mRNA-1
chr5_4	exon	3586109	3586530	3586109	ID=Msa0830530-mRNA-1:exon:1367;Parent=Msa0830530-mRNA-1
chr5_4	CDS	3581492	3583759	3581492	ID=Msa0830530-mRNA-1:cds;Parent=Msa0830530-mRNA-1
chr5_4	CDS	3584644	3584683	3584644	ID=Msa0830530-mRNA-1:cds;Parent=Msa0830530-mRNA-1
chr5_4	CDS	3585726	3585787	3585726	ID=Msa0830530-mRNA-1:cds;Parent=Msa0830530-mRNA-1
chr5_4	three_prime_UTR	3585788	3585995	3585788	ID=Msa0830530-mRNA-1:three_prime_utr;Parent=Msa0830530-mRNA-1
chr5_4	three_prime_UTR	3586109	3586530	3586109	ID=Msa0830530-mRNA-1:three_prime_utr;Parent=Msa0830530-mRNA-1

Gene Sequence

>Msa0830530

ATGCGTACTTCTTTTCTAGCTAAAAACGTTTCCTTATCTAAGCAACTTCAAAAGTGTATTCCAAATTCATGGAAAGAAAAACCCACAAAACCCTTTCACAAACCACTCATTTCTTCAACTAATTCACCATCGTTTTCAATGGTGGGTGTTCTTATTGCATCCCTCAAGGATTTCATCACCCACAATCACTTATCAAATGCATTCAAAACCTTCATACACATACAACACCACCATGCTTCATCTTTTGATATTATCTTTCAACCCATTAAACATCTTTTATTGGGTTGCACAAATCTCAAGTCTTTATCACAGGGTAAACAAATTCATGCTCATATTATCTCATTGGGTATTGATAAAAATCCAATCTTGGTTTCAAAGCTTATTAATTTCTATGCTAGTGTTGATTTACTAGCTGATGCTCAAATTGTTGCTGAGTGTTCAAATAGTTTTGATCCTTTGCATTGGAATATGGCTATTTCTTTGTATGTTAAGAATTGTTTGTTTGAGAATGCAATTTCTGTTTATAGGAGAATGTTGAGTAAGGGTGTTATACCGGATGATTATACTTATCCGTCGGTTCTTAAGGCTTGTGGGGAGTTATTGGATTATGATAGTGGTGTGAAGGTTCATAGGTCTATTCAGCAGAGTTCTATTAAGTGGAGTTTGTTTGTTCATAATGCGTTGGTGTTTATGTATGGTAGGTTTGGGAAGTTAGAGGTGGCTCGTGAACTGTTTGATATTATGCCGGCTAGAGATGATGTTTCGTGGAATACTATGATTAGTTGTTATGCTTCTAGGGGTTTGTGGGATGAAGCGTTTCGGTTATTTGGATGTATGCGAGAGGCAGGTATTGAAAGGAATGTTATTATATGGAATACCATTGCTGGAGGGTGCTTGCATACGGGAAATTTTATAGGGGCGCTTAAGTTGTTTTCTCAAATGAGAGCAGTGATTCAGTTGGACTCTGTTGCAATGGTTGTTGGATTGAATGCATGTTCGCACATTGGAGCGGTTAAATTGGGAAAGGAGATTCATGGTCATGCTGTAAGAACTTGCTTTGATGTGTTTGACAACGTAAAAAACGCATTAATTACAATGTATTCCAGGTGTAGAGATCTCAACCATGCATATTTGTTATTTCGAAAAATGGATGAGAAAGGTTTGATCACATGGAATGCCATGCTTTCTGGGTTTGCTCACCTGGATCGATCTGAGGAAGTCTCCTTCCTTTTTAGAGAAATGCTACGTGAGGGCGTTGAGCCTAATTATGTGACCATTGCAAGCGTCCTTCCCCTTTGCGCTCGAATAGCAAATCTACAACATGGTAAAGAGTTTCATTGCTACATGATAAAGCGTGAAGAACAGTTCAAGGGCTATTTATTATTGTGGAACTCACTGGTGGAAATGTATTCAAGGTCTGGCAAAGTTTTAGAAGCCAGGAAAGTCTTTGATTCATTAAGCAGGAAAGATGAAGTCACATATACTTCCATGATTATGGGATATGGTGTGAGTGGGGATGGAGAAACTGCTCTAAAATTATTTGCAGAGATGCGCAGGCTCAATATTAAACCGGATCACGTGACAATGGTTGCAGTTCTAACAGCATGTAGTCATTCTGGCCTTGTAGCACAAGGGCAATTGCTATTTAGAAAGATGATAGAAGTCTATGGAATAGATCCTAGGGTTGAGCACTATTCATGCATGGTTGATCTCTTTGGAAGGGCTGGTCTTCTCGACAAAGCAAAGGAGGTTATCACAGGGATGTCATGCAAGCCTACTTCGGCAATATGGGCTACTCTAATAGGAGCTTGTAAAATCCACGAAAATACAGTGATTGGGGAATGGGCTGCAGGAAAGTTGCTGGAAATGAAGCCTGATCATTCAGGTCATTGTTTGTTGATGGCAAATATGTATGCAGCTGCTGGTTTGACGAACAAAGAAGCTGAAGCGAGGACTTATATGAGGGATTCAGGTGTGAAAAGGACTCCTGGTTGTGCTTGGGTTGATGTTGGCAGGGAGCATTGTCCCTTTTTAGCTGGGGACACCTCCAACCCTCGTTCAGGCGAGATTTCCCCCTTGATGAAAAGGATGAATATACTCATGAAAGATGCTGGTTATGTACCTAGCAAAGGGGTTGTCTCATCTGAGGAAGATATTGAGGAGTTGAGTATGATAGGGAATGAACTCATCAAAGATGCTGGTTATGTACCAAGCGAAGGGGTTGTCTCATCTGAGGAAGATTTTGAGGAGTTGAGTATGATAGGGAATGGTCATGGACAATTTGGTGTGCAAGTTGAGAGCAACAGAGGATCCATGGCATCTGTCCTCAACAATGGAGATAAGAAGGCTGTTAATGGTGCAAGAAGTTGA

Protein sequence

>Msa0830530

MRTSFLAKNVSLSKQLQKCIPNSWKEKPTKPFHKPLISSTNSPSFSMVGVLIASLKDFITHNHLSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQGKQIHAHIISLGIDKNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMAISLYVKNCLFENAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVKVHRSIQQSSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNVIIWNTIAGGCLHTGNFIGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLNHAYLLFRKMDEKGLITWNAMLSGFAHLDRSEEVSFLFREMLREGVEPNYVTIASVLPLCARIANLQHGKEFHCYMIKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLTACSHSGLVAQGQLLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIHENTVIGEWAAGKLLEMKPDHSGHCLLMANMYAAAGLTNKEAEARTYMRDSGVKRTPGCAWVDVGREHCPFLAGDTSNPRSGEISPLMKRMNILMKDAGYVPSKGVVSSEEDIEELSMIGNELIKDAGYVPSEGVVSSEEDFEELSMIGNGHGQFGVQVESNRGSMASVLNNGDKKAVNGARS*