AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706400 MtrunA17_Chr8g0385701 77.465 142 16 1 55 196 454 579 3.05e-63 205
Msa0706400 MtrunA17_Chr7g0273481 73.394 109 29 0 86 194 465 573 1.99e-47 163
Msa0706400 MtrunA17_Chr1g0170101 76.923 104 24 0 91 194 430 533 2.00e-47 162
Msa0706400 MtrunA17_Chr3g0092621 80.556 72 14 0 23 94 80 151 5.35e-36 124
Msa0706400 MtrunA17_Chr4g0055931 76.812 69 16 0 26 94 94 162 4.40e-34 123
Msa0706400 MtrunA17_Chr6g0488471 77.273 66 15 0 26 91 96 161 1.09e-33 121
Msa0706400 MtrunA17_Chr2g0331031 65.432 81 28 0 26 106 108 188 2.24e-33 122
Msa0706400 MtrunA17_Chr4g0062741 55.102 98 44 0 26 123 137 234 7.82e-32 117
Msa0706400 MtrunA17_Chr8g0389241 62.791 86 26 2 6 91 89 168 1.16e-31 115
Msa0706400 MtrunA17_Chr5g0415191 84.286 70 11 0 26 95 101 170 1.68e-30 113
Msa0706400 MtrunA17_Chr4g0059701 92.857 70 5 0 26 95 83 152 5.89e-30 111
Msa0706400 MtrunA17_Chr1g0162081 64.103 78 28 0 26 103 121 198 7.30e-30 111
Msa0706400 MtrunA17_Chr7g0241761 50.000 116 40 2 26 129 139 248 7.43e-30 112
Msa0706400 MtrunA17_Chr1g0210471 68.657 67 21 0 26 92 123 189 3.17e-28 105
Msa0706400 MtrunA17_Chr3g0104071 66.176 68 23 0 26 93 146 213 3.34e-27 105
Msa0706400 MtrunA17_Chr5g0429521 66.176 68 23 0 26 93 131 198 4.72e-27 104
Msa0706400 MtrunA17_Chr3g0135671 57.895 76 29 1 26 98 90 165 5.89e-26 99.8
Msa0706400 MtrunA17_Chr6g0452791 73.333 60 16 0 27 86 80 139 1.56e-25 97.1
Msa0706400 MtrunA17_Chr5g0436501 53.261 92 41 1 26 115 124 215 2.09e-25 99.4
Msa0706400 MtrunA17_Chr5g0409841 42.353 85 47 1 27 109 92 176 1.86e-20 85.5
Msa0706400 MtrunA17_Chr5g0440741 44.706 85 43 2 29 109 102 186 6.53e-19 82.4
Msa0706400 MtrunA17_Chr5g0440731 43.182 88 46 2 26 109 104 191 1.43e-18 81.3
Msa0706400 MtrunA17_Chr5g0409831 42.268 97 49 3 27 116 77 173 1.18e-17 77.8
Msa0706400 MtrunA17_Chr8g0365011 44.186 86 34 2 29 100 94 179 4.26e-16 74.7
Msa0706400 MtrunA17_Chr8g0364731 51.429 70 32 1 36 103 10 79 7.31e-16 72.0
Msa0706400 MtrunA17_Chr1g0192061 40.909 88 46 3 13 97 49 133 6.17e-14 67.0
Msa0706400 MtrunA17_Chr5g0432921 37.363 91 44 3 29 116 115 195 3.04e-12 63.2
Msa0706400 MtrunA17_Chr5g0432941 33.962 106 57 3 14 116 100 195 3.13e-12 63.2
Msa0706400 MtrunA17_Chr3g0113121 45.070 71 32 1 29 92 97 167 2.10e-11 60.8
Msa0706400 MtrunA17_Chr7g0273391 73.529 34 9 0 161 194 1 34 4.90e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706400 AT5G61900.3 85.577 104 15 0 91 194 472 575 4.20e-53 178
Msa0706400 AT5G61900.1 85.577 104 15 0 91 194 472 575 4.20e-53 178
Msa0706400 AT5G61910.4 83.962 106 17 0 89 194 1238 1343 2.25e-52 180
Msa0706400 AT5G07300.1 78.431 102 22 0 91 192 475 576 1.46e-49 169
Msa0706400 AT1G08860.1 69.811 106 32 0 89 194 473 578 2.29e-43 152
Msa0706400 AT5G47390.1 69.880 83 24 1 26 107 95 177 4.27e-36 129
Msa0706400 AT1G49010.1 73.134 67 18 0 26 92 133 199 5.62e-30 112
Msa0706400 AT1G70000.1 82.857 70 12 0 26 95 97 166 3.07e-29 109
Msa0706400 AT1G70000.2 82.857 70 12 0 26 95 97 166 3.07e-29 109
Msa0706400 AT5G56840.1 68.657 67 20 1 26 91 90 156 1.11e-28 107
Msa0706400 AT5G08520.1 68.657 67 21 0 26 92 117 183 3.08e-28 107
Msa0706400 AT1G19000.2 66.327 98 30 1 26 123 101 195 4.22e-28 107
Msa0706400 AT1G19000.1 66.327 98 30 1 26 123 101 195 4.22e-28 107
Msa0706400 AT2G38090.1 66.176 68 23 0 26 93 140 207 5.38e-28 107
Msa0706400 AT5G04760.1 66.176 68 23 0 26 93 98 165 6.92e-28 104
Msa0706400 AT5G61620.1 63.768 69 25 0 26 94 107 175 9.75e-28 106
Msa0706400 AT5G58900.1 56.471 85 37 0 26 110 140 224 1.33e-27 105
Msa0706400 AT3G16350.1 68.293 82 24 1 26 107 136 215 2.64e-27 106
Msa0706400 AT1G74840.1 49.635 137 65 2 26 161 95 228 2.17e-26 102
Msa0706400 AT1G74840.2 70.930 86 22 1 26 111 95 177 3.68e-26 100
Msa0706400 AT5G01200.1 61.765 68 26 0 26 93 145 212 1.21e-24 97.4
Msa0706400 AT5G05790.2 61.765 68 26 0 26 93 130 197 6.22e-24 95.9
Msa0706400 AT5G05790.1 61.765 68 26 0 26 93 130 197 6.22e-24 95.9
Msa0706400 AT3G11280.2 62.687 67 25 0 26 92 126 192 8.63e-24 95.1
Msa0706400 AT3G11280.1 62.687 67 25 0 26 92 126 192 8.63e-24 95.1
Msa0706400 AT4G09450.1 56.522 69 30 0 25 93 89 157 2.81e-21 87.0
Msa0706400 AT3G10580.2 54.667 75 32 1 26 100 94 166 4.46e-21 87.8
Msa0706400 AT3G10580.1 57.353 68 27 1 26 93 94 159 6.76e-21 87.8
Msa0706400 AT5G23650.1 51.282 78 38 0 26 103 119 196 2.78e-20 87.0
Msa0706400 AT3G10590.1 50.000 68 33 1 28 95 112 178 1.53e-17 77.4

Find 34 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTACAGTTTGTTCCATTTC+GGG 0.198239 4_4:+79371233 Msa0706400:CDS
TAGTACAGTTTGTTCCATTT+CGG 0.270483 4_4:+79371232 Msa0706400:CDS
TCTTTACATGACTAGAGATT+TGG 0.338099 4_4:-79371429 None:intergenic
CTACTTTGAACATCCCGAAA+TGG 0.420882 4_4:-79371246 None:intergenic
GATAGGCTTGAAAGTTCATC+TGG 0.456547 4_4:+79371189 Msa0706400:CDS
TTGGTTGGATTGGAGAAAGT+GGG 0.463944 4_4:+79365913 Msa0706400:CDS
CTCCTCCTACGCCAACGATA+AGG 0.479761 4_4:-79370992 None:intergenic
AGAAAGTGGGAAAAGGTGAT+TGG 0.482958 4_4:+79365926 Msa0706400:CDS
ATCCTTATCGTTGGCGTAGG+AGG 0.496936 4_4:+79370990 Msa0706400:CDS
AGGAGCTGATTTCAAAGAGA+TGG 0.503459 4_4:+79371010 Msa0706400:CDS
CCAACGATAAGGATTGATAA+TGG 0.504163 4_4:-79370981 None:intergenic
TGGATGCAGACAAAGGAGAT+AGG 0.507223 4_4:+79371172 Msa0706400:CDS
CCATTATCAATCCTTATCGT+TGG 0.521967 4_4:+79370981 Msa0706400:CDS
GATGGTGATATCAAAGAGAC+TGG 0.526759 4_4:-79366058 None:intergenic
TTTGGTTGGATTGGAGAAAG+TGG 0.531455 4_4:+79365912 Msa0706400:CDS
GGATTGGAGAAAGTGGGAAA+AGG 0.562648 4_4:+79365919 Msa0706400:CDS
TCAATCCTTATCGTTGGCGT+AGG 0.573889 4_4:+79370987 Msa0706400:CDS
TTGTGCTCTTCCTCAGTCCA+CGG 0.578432 4_4:-79365883 None:intergenic
AGATGCACTTGTTAAAGCAT+CGG 0.592040 4_4:+79370953 Msa0706400:CDS
TATCAAAGAGACTGGATCTA+CGG 0.592657 4_4:-79366050 None:intergenic
TACATGACTAGAGATTTGGT+TGG 0.595044 4_4:-79371425 None:intergenic
CTACTAGGATGGAGTTGTGA+CGG 0.599974 4_4:+79370914 Msa0706400:intron
AGCTGATTTCAAAGAGATGG+AGG 0.615204 4_4:+79371013 Msa0706400:CDS
GTGATTGGAGAGGAATCTCA+AGG 0.619264 4_4:+79365941 Msa0706400:CDS
CAGATCTTGGATGCAGACAA+AGG 0.620101 4_4:+79371165 Msa0706400:intron
GTGGGAAAAGGTGATTGGAG+AGG 0.624127 4_4:+79365931 Msa0706400:CDS
TGAATGGATCAGGGATTCCG+TGG 0.626840 4_4:+79365866 Msa0706400:intron
CGATAAGGATTGATAATGGT+AGG 0.628743 4_4:-79370977 None:intergenic
GGCGATTGAGATTACTTCGG+CGG 0.629813 4_4:-79366023 None:intergenic
GCATGACTTGCAACATGCGT+AGG 0.636946 4_4:-79365985 None:intergenic
GACGGCGATTGAGATTACTT+CGG 0.641222 4_4:-79366026 None:intergenic
CTTTGATATCACCATCGACA+CGG 0.646904 4_4:+79366065 Msa0706400:CDS
ATCAGGGATTCCGTGGACTG+AGG 0.660333 4_4:+79365873 Msa0706400:intron
AGAGACTGGATCTACGGCGA+CGG 0.684123 4_4:-79366044 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAAAATATATTA+AGG + chr4_4:79369232-79369251 Msa0706400:intron 0.0%
!! AATAAATAAAAATATATTAA+GGG + chr4_4:79369233-79369252 Msa0706400:intron 0.0%
!!! TATTTTTGTGAATATTAAAT+TGG + chr4_4:79367591-79367610 Msa0706400:intron 10.0%
!!! ATTTTTGTGAATATTAAATT+GGG + chr4_4:79367592-79367611 Msa0706400:intron 10.0%
!! AAAATAAAGGTAAATAAATT+TGG - chr4_4:79367907-79367926 None:intergenic 10.0%
!! TAGTATATAAATAATTCTTA+GGG - chr4_4:79368834-79368853 None:intergenic 10.0%
!!! TTATTATTAAATTACTGATT+TGG + chr4_4:79368976-79368995 Msa0706400:intron 10.0%
!! ATAATTATTATGTGAATATA+TGG + chr4_4:79370558-79370577 Msa0706400:intron 10.0%
!! AACTAATTGAATACAAATTT+AGG - chr4_4:79366138-79366157 None:intergenic 15.0%
!!! TAATCAATAAAGTAGTATTT+TGG + chr4_4:79366160-79366179 Msa0706400:intron 15.0%
!!! AATTTTCTCTGTTATTTTTT+TGG + chr4_4:79366202-79366221 Msa0706400:intron 15.0%
!!! ATTTTGTATTATAAACCTAA+AGG - chr4_4:79366358-79366377 None:intergenic 15.0%
!!! TTAAGTCATTCATTTTTAAA+TGG + chr4_4:79366431-79366450 Msa0706400:intron 15.0%
!!! TCTTATTTGAATTTTATTCA+TGG + chr4_4:79366816-79366835 Msa0706400:intron 15.0%
!! AATAAGAAAGAAATAATGTT+TGG - chr4_4:79366869-79366888 None:intergenic 15.0%
!! AGTATTTCTTATAATATGTA+TGG + chr4_4:79367157-79367176 Msa0706400:intron 15.0%
!!! AAATTAATATAAAAGTGCAA+TGG - chr4_4:79367781-79367800 None:intergenic 15.0%
!! ACAAAATAACAAGAAAATAA+AGG - chr4_4:79367920-79367939 None:intergenic 15.0%
!!! TTTATTTTCTTGTTATTTTG+TGG + chr4_4:79367919-79367938 Msa0706400:intron 15.0%
!! NNNNNNNNTTAGAATGCTTA+AGG - chr4_4:79368315-79368334 None:intergenic 15.0%
!! AGAACTTAAAATTCATTATA+TGG - chr4_4:79368512-79368531 None:intergenic 15.0%
!! AATACAAGTATAATTTCAAA+AGG - chr4_4:79368579-79368598 None:intergenic 15.0%
!! TTATTCTTCAAAATTTACTA+TGG - chr4_4:79368649-79368668 None:intergenic 15.0%
!! TGTATATTATAACATAATAG+GGG - chr4_4:79368733-79368752 None:intergenic 15.0%
!! GTGTATATTATAACATAATA+GGG - chr4_4:79368734-79368753 None:intergenic 15.0%
!! AGTGTATATTATAACATAAT+AGG - chr4_4:79368735-79368754 None:intergenic 15.0%
!!! TTTTAGGTTTTTATTTTCAA+GGG - chr4_4:79368763-79368782 None:intergenic 15.0%
!!! ATTTTAGGTTTTTATTTTCA+AGG - chr4_4:79368764-79368783 None:intergenic 15.0%
!! AGTATATAAATAATTCTTAG+GGG - chr4_4:79368833-79368852 None:intergenic 15.0%
!! GTAGTATATAAATAATTCTT+AGG - chr4_4:79368835-79368854 None:intergenic 15.0%
!! TAATTTCAATGTCAATAATA+AGG + chr4_4:79368942-79368961 Msa0706400:intron 15.0%
!!! TTTAAATACCCATATTTTAA+TGG + chr4_4:79369021-79369040 Msa0706400:intron 15.0%
!! AAATAAAAATATATTAAGGG+AGG + chr4_4:79369236-79369255 Msa0706400:intron 15.0%
!! AATAAAAATATATTAAGGGA+GGG + chr4_4:79369237-79369256 Msa0706400:intron 15.0%
!! ATTATATAAGTAGAATTAGA+AGG + chr4_4:79369536-79369555 Msa0706400:intron 15.0%
!!! ATTTTCTAAAGAAAATTGTA+TGG + chr4_4:79370418-79370437 Msa0706400:intron 15.0%
!! ATTCAAAATTAGATGTTATA+AGG + chr4_4:79370517-79370536 Msa0706400:intron 15.0%
!! TTCAAAATTAGATGTTATAA+GGG + chr4_4:79370518-79370537 Msa0706400:intron 15.0%
!! ATTTCAATCAATTCAAACAA+AGG - chr4_4:79365816-79365835 None:intergenic 20.0%
!!! TGTTATTGATTTTCTTTGAA+TGG + chr4_4:79365850-79365869 Msa0706400:intron 20.0%
!! CAATAGTTCAAATTTCTAAA+TGG - chr4_4:79366274-79366293 None:intergenic 20.0%
!! AGAAATTTGAACTATTGTAA+AGG + chr4_4:79366277-79366296 Msa0706400:intron 20.0%
!! AAGTGATTCATTTGTTTAAA+TGG + chr4_4:79366318-79366337 Msa0706400:intron 20.0%
!!! AGATTTTTTTTGAAGAACAT+TGG + chr4_4:79367027-79367046 Msa0706400:intron 20.0%
!! AATACTCTAAATTAAGCATA+AGG - chr4_4:79367143-79367162 None:intergenic 20.0%
!! CTTATAATATTTGATGTATC+TGG + chr4_4:79367287-79367306 Msa0706400:intron 20.0%
!!! GTAATAAAAGTTGATGTATT+TGG + chr4_4:79367397-79367416 Msa0706400:intron 20.0%
!! TATTCACAAAAATATCTCTT+TGG - chr4_4:79367585-79367604 None:intergenic 20.0%
!! ACAAACTACGTATATTAAAA+AGG + chr4_4:79367963-79367982 Msa0706400:intron 20.0%
!!! AATATTTCTGAAAAGAAAAG+CGG - chr4_4:79368027-79368046 None:intergenic 20.0%
!!! TTTGACAATTTTTTAAGTCA+AGG + chr4_4:79368057-79368076 Msa0706400:intron 20.0%
!! AAGTCAAGGAAAAAAAAAAT+TGG + chr4_4:79368071-79368090 Msa0706400:intron 20.0%
!!! AGATTTTTATAACAACTCTT+TGG + chr4_4:79368101-79368120 Msa0706400:intron 20.0%
!! TAGATGTAGCAATTTATTAA+CGG + chr4_4:79368166-79368185 Msa0706400:intron 20.0%
!! CATCGTATAAATTAAATGAA+GGG - chr4_4:79368548-79368567 None:intergenic 20.0%
!! TCATCGTATAAATTAAATGA+AGG - chr4_4:79368549-79368568 None:intergenic 20.0%
!!! AGGGGAATATAATTTATTTT+AGG - chr4_4:79368779-79368798 None:intergenic 20.0%
!! CACTAAAACCATTAAAATAT+GGG - chr4_4:79369032-79369051 None:intergenic 20.0%
!! TCACTAAAACCATTAAAATA+TGG - chr4_4:79369033-79369052 None:intergenic 20.0%
!!! ATGACTAGTAACTTTATTTT+GGG - chr4_4:79369437-79369456 None:intergenic 20.0%
!!! AATGACTAGTAACTTTATTT+TGG - chr4_4:79369438-79369457 None:intergenic 20.0%
!!! GTTACATGACTATTTTATTT+AGG + chr4_4:79369580-79369599 Msa0706400:intron 20.0%
!! TATATTGTATTTGGATGTAA+GGG - chr4_4:79369756-79369775 None:intergenic 20.0%
!! ATATATTGTATTTGGATGTA+AGG - chr4_4:79369757-79369776 None:intergenic 20.0%
!! GTTGCAAAATATATTGTATT+TGG - chr4_4:79369765-79369784 None:intergenic 20.0%
!! ACAAAATAATTAGTGAACAT+GGG - chr4_4:79369934-79369953 None:intergenic 20.0%
!! AACAAAATAATTAGTGAACA+TGG - chr4_4:79369935-79369954 None:intergenic 20.0%
!! TTACTAACAATTATCTCAAT+AGG + chr4_4:79370185-79370204 Msa0706400:intron 20.0%
!! TCTTAACTCAAAGTTATAAT+TGG + chr4_4:79371064-79371083 Msa0706400:intron 20.0%
! AATATCTACTTAAAATCCTG+AGG - chr4_4:79365665-79365684 None:intergenic 25.0%
!! TCTCACATTTAAATGGTTTT+TGG + chr4_4:79365721-79365740 Msa0706400:intron 25.0%
! TTACAAATTCAATGTAGCTA+GGG - chr4_4:79366397-79366416 None:intergenic 25.0%
! AAAGCTACAAATTCAACTTA+CGG - chr4_4:79366485-79366504 None:intergenic 25.0%
!!! ATTAGTGCTGTTATTTTTCA+TGG + chr4_4:79366562-79366581 Msa0706400:intron 25.0%
!!! TGTATGGTTTTTTTAATTGC+AGG + chr4_4:79367173-79367192 Msa0706400:intron 25.0%
!!! TAGTGTTTTTAAATCACTGT+TGG - chr4_4:79367257-79367276 None:intergenic 25.0%
! AACAACTTTGTGTTTATGTT+AGG + chr4_4:79367502-79367521 Msa0706400:intron 25.0%
!! ATATTTCTGAAAAGAAAAGC+GGG - chr4_4:79368026-79368045 None:intergenic 25.0%
! TATTAGCCAAATATTTAACG+TGG + chr4_4:79368198-79368217 Msa0706400:intron 25.0%
! AATTAAATGAAGGGATTGTT+CGG - chr4_4:79368539-79368558 None:intergenic 25.0%
! TATTATAACATAATAGGGGA+GGG - chr4_4:79368729-79368748 None:intergenic 25.0%
! ATATTATAACATAATAGGGG+AGG - chr4_4:79368730-79368749 None:intergenic 25.0%
! TATAAATAATTCTTAGGGGA+GGG - chr4_4:79368829-79368848 None:intergenic 25.0%
! ATATAAATAATTCTTAGGGG+AGG - chr4_4:79368830-79368849 None:intergenic 25.0%
!!! AATTGTTTTGTCTTGAATAG+TGG - chr4_4:79368912-79368931 None:intergenic 25.0%
!!! AGTGTAGATTTTAACATTAG+AGG + chr4_4:79369261-79369280 Msa0706400:intron 25.0%
!!! GTGTAGATTTTAACATTAGA+GGG + chr4_4:79369262-79369281 Msa0706400:intron 25.0%
!!! TGTAGATTTTAACATTAGAG+GGG + chr4_4:79369263-79369282 Msa0706400:intron 25.0%
! TGTAATTCAATCTTCTTTCA+AGG + chr4_4:79369294-79369313 Msa0706400:intron 25.0%
! GTAATTCAATCTTCTTTCAA+GGG + chr4_4:79369295-79369314 Msa0706400:intron 25.0%
!!! TCTAATATTTTTTGCATGAG+AGG + chr4_4:79369335-79369354 Msa0706400:intron 25.0%
!!! CTAATATTTTTTGCATGAGA+GGG + chr4_4:79369336-79369355 Msa0706400:intron 25.0%
!!! TAATATTTTTTGCATGAGAG+GGG + chr4_4:79369337-79369356 Msa0706400:intron 25.0%
!!! AGTGTATATTTTGACATAAC+AGG + chr4_4:79369365-79369384 Msa0706400:intron 25.0%
!!! GTGTATATTTTGACATAACA+GGG + chr4_4:79369366-79369385 Msa0706400:intron 25.0%
!!! TGTATATTTTGACATAACAG+GGG + chr4_4:79369367-79369386 Msa0706400:intron 25.0%
! TGTATTCATATATGTATTCC+TGG - chr4_4:79369502-79369521 None:intergenic 25.0%
! CTTATCTTAGAGTAACTAAA+AGG + chr4_4:79369689-79369708 Msa0706400:intron 25.0%
! ATATTGTATTTGGATGTAAG+GGG - chr4_4:79369755-79369774 None:intergenic 25.0%
!! TACAATATATTTTGCAACCT+AGG + chr4_4:79369767-79369786 Msa0706400:intron 25.0%
! AAAAATGCTGAATGGAAATT+CGG + chr4_4:79370072-79370091 Msa0706400:intron 25.0%
!! AAGATATCATAAGAAGTGTA+TGG + chr4_4:79370634-79370653 Msa0706400:intron 25.0%
! ATGTTATTCAATATACTGCA+TGG + chr4_4:79370714-79370733 Msa0706400:intron 25.0%
! TGTTATTCAATATACTGCAT+GGG + chr4_4:79370715-79370734 Msa0706400:intron 25.0%
!!! GCAATTTTTTTGGAATTGTT+TGG - chr4_4:79370848-79370867 None:intergenic 25.0%
! AACTCAAAGTTATAATTGGT+TGG + chr4_4:79371068-79371087 Msa0706400:intron 25.0%
!! TAAAGTCATAATTTGCAAAC+TGG - chr4_4:79371276-79371295 None:intergenic 25.0%
! ATATACGCTAAAAATTGAGT+AGG - chr4_4:79371390-79371409 None:intergenic 25.0%
CAAATTGACAAAAAACACAC+AGG - chr4_4:79365451-79365470 None:intergenic 30.0%
!!! GTTTTTTGTCAATTTGCTTC+TGG + chr4_4:79365455-79365474 Msa0706400:CDS 30.0%
AATGCAGCACAATTCAAAAT+TGG - chr4_4:79365517-79365536 None:intergenic 30.0%
TGTGCTGCATTATTCATTTA+TGG + chr4_4:79365526-79365545 Msa0706400:intron 30.0%
GTGCTGCATTATTCATTTAT+GGG + chr4_4:79365527-79365546 Msa0706400:intron 30.0%
ACATGTGCACAAACTTTAAT+TGG + chr4_4:79365580-79365599 Msa0706400:intron 30.0%
ATAACTACATCTTATGCAAG+AGG + chr4_4:79365604-79365623 Msa0706400:intron 30.0%
CTACATGTCTCACATTTAAA+TGG + chr4_4:79365714-79365733 Msa0706400:intron 30.0%
! TGATTTTCTTTGAATGGATC+AGG + chr4_4:79365856-79365875 Msa0706400:intron 30.0%
! GATTTTCTTTGAATGGATCA+GGG + chr4_4:79365857-79365876 Msa0706400:intron 30.0%
GTTCATTATGTTAGTCCTTT+AGG + chr4_4:79366340-79366359 Msa0706400:intron 30.0%
CTTACAAATTCAATGTAGCT+AGG - chr4_4:79366398-79366417 None:intergenic 30.0%
TACAAATTCAACTTACGGTA+AGG - chr4_4:79366480-79366499 None:intergenic 30.0%
! TTTGTACCTTTTACTACTGT+TGG + chr4_4:79366527-79366546 Msa0706400:intron 30.0%
AAGTAAAGCCTTGAATCATT+TGG + chr4_4:79366626-79366645 Msa0706400:intron 30.0%
ATGTACTAATGACCTATCAA+AGG - chr4_4:79366785-79366804 None:intergenic 30.0%
AGGTCATTAGTACATATTGT+TGG + chr4_4:79366790-79366809 Msa0706400:intron 30.0%
TCTGTTTAGAAAGCTATTTG+TGG + chr4_4:79367088-79367107 Msa0706400:intron 30.0%
ATGCATTTCAAGAGTTTACT+CGG + chr4_4:79367322-79367341 Msa0706400:intron 30.0%
CTAAAGCCACGTTAAATATT+TGG - chr4_4:79368207-79368226 None:intergenic 30.0%
AAAATTCATTATATGGAGCC+AGG - chr4_4:79368505-79368524 None:intergenic 30.0%
GATATGATCATATGAAGAGT+AGG - chr4_4:79368607-79368626 None:intergenic 30.0%
ATTATAACATAATAGGGGAG+GGG - chr4_4:79368728-79368747 None:intergenic 30.0%
TTGTAATCTAAGCATCTCTT+AGG - chr4_4:79368804-79368823 None:intergenic 30.0%
ATAAATAATTCTTAGGGGAG+GGG - chr4_4:79368828-79368847 None:intergenic 30.0%
!! GTAGATTTTAACATTAGAGG+GGG + chr4_4:79369264-79369283 Msa0706400:intron 30.0%
AATGTAATTTAAGCATCTCC+CGG + chr4_4:79369395-79369414 Msa0706400:intron 30.0%
! CATTTCCTTTTATTGCCATA+CGG + chr4_4:79369625-79369644 Msa0706400:intron 30.0%
TATTGTATTTGGATGTAAGG+GGG - chr4_4:79369754-79369773 None:intergenic 30.0%
GATTTAGTTGAAGTAATCCT+AGG - chr4_4:79369787-79369806 None:intergenic 30.0%
AAGACAACTACAAATAAGTG+GGG - chr4_4:79369882-79369901 None:intergenic 30.0%
GAAGACAACTACAAATAAGT+GGG - chr4_4:79369883-79369902 None:intergenic 30.0%
TATTTGTAGTTGTCTTCCTT+TGG + chr4_4:79369886-79369905 Msa0706400:intron 30.0%
CTAGTAGTTAACATTACCAA+AGG - chr4_4:79369905-79369924 None:intergenic 30.0%
GTATCTTACATAAAACGCAA+AGG - chr4_4:79370001-79370020 None:intergenic 30.0%
! CCATTCAGCATTTTTACTAT+GGG - chr4_4:79370067-79370086 None:intergenic 30.0%
! TCCATTCAGCATTTTTACTA+TGG - chr4_4:79370068-79370087 None:intergenic 30.0%
! ATATCATAAGAAGTGTATGG+AGG + chr4_4:79370637-79370656 Msa0706400:intron 30.0%
! TATCATAAGAAGTGTATGGA+GGG + chr4_4:79370638-79370657 Msa0706400:intron 30.0%
GTTATTCAATATACTGCATG+GGG + chr4_4:79370716-79370735 Msa0706400:intron 30.0%
TTGTATGCATTGTTCTAACA+TGG - chr4_4:79370805-79370824 None:intergenic 30.0%
! TAGTACAGTTTGTTCCATTT+CGG + chr4_4:79371232-79371251 Msa0706400:CDS 30.0%
ACAAGAGATTGATAAGTTCA+AGG - chr4_4:79371307-79371326 None:intergenic 30.0%
!!! CTCAATTTTTAGCGTATATG+CGG + chr4_4:79371391-79371410 Msa0706400:CDS 30.0%
ACAAAAAACACACAGGATAG+GGG - chr4_4:79365444-79365463 None:intergenic 35.0%
GACAAAAAACACACAGGATA+GGG - chr4_4:79365445-79365464 None:intergenic 35.0%
TGACAAAAAACACACAGGAT+AGG - chr4_4:79365446-79365465 None:intergenic 35.0%
!! CAATTTGCTTCTGGTTTGTA+AGG + chr4_4:79365464-79365483 Msa0706400:intron 35.0%
!! TAGCAGGTTTGTTACTTACA+AGG + chr4_4:79365487-79365506 Msa0706400:intron 35.0%
TCACTTGGATTGAGCATTAA+AGG + chr4_4:79365632-79365651 Msa0706400:intron 35.0%
CATTAAAGGTTGTTTACCTC+AGG + chr4_4:79365646-79365665 Msa0706400:intron 35.0%
!!! CAAGATGTTTTTGGTTGGAT+TGG + chr4_4:79365903-79365922 Msa0706400:CDS 35.0%
TATCAAAGAGACTGGATCTA+CGG - chr4_4:79366053-79366072 None:intergenic 35.0%
!!! CATCGACACGGTAATTTTTT+CGG + chr4_4:79366077-79366096 Msa0706400:intron 35.0%
AATTCAACTTACGGTAAGGT+GGG - chr4_4:79366476-79366495 None:intergenic 35.0%
AAATTCAACTTACGGTAAGG+TGG - chr4_4:79366477-79366496 None:intergenic 35.0%
TACGAACCAACAGTAGTAAA+AGG - chr4_4:79366536-79366555 None:intergenic 35.0%
TCCATTAATGACATGTAGCA+TGG + chr4_4:79366663-79366682 Msa0706400:intron 35.0%
TCCATGCTACATGTCATTAA+TGG - chr4_4:79366667-79366686 None:intergenic 35.0%
!! AAGGTACTATTTGGTGCATA+AGG - chr4_4:79366766-79366785 None:intergenic 35.0%
CACCAAATAGTACCTTTGAT+AGG + chr4_4:79366770-79366789 Msa0706400:intron 35.0%
!! GACCTATCAAAGGTACTATT+TGG - chr4_4:79366775-79366794 None:intergenic 35.0%
AACAGGTCAAGAATCAAGAT+AGG + chr4_4:79367549-79367568 Msa0706400:intron 35.0%
AATATCTCTTTGGCAACTCA+AGG - chr4_4:79367575-79367594 None:intergenic 35.0%
TTGGTATGGATACCGAATAA+AGG + chr4_4:79368260-79368279 Msa0706400:intron 35.0%
TGGTATGGATACCGAATAAA+GGG + chr4_4:79368261-79368280 Msa0706400:intron 35.0%
CGTTAACAAGACCCTTTATT+CGG - chr4_4:79368275-79368294 None:intergenic 35.0%
TGTAATTCAAGCTTCTCATG+GGG - chr4_4:79368698-79368717 None:intergenic 35.0%
GTGTAATTCAAGCTTCTCAT+GGG - chr4_4:79368699-79368718 None:intergenic 35.0%
AGTGTAATTCAAGCTTCTCA+TGG - chr4_4:79368700-79368719 None:intergenic 35.0%
!! ATTTTAACATTAGAGGGGGA+GGG + chr4_4:79369268-79369287 Msa0706400:intron 35.0%
ATTCAATCTTCTTTCAAGGG+AGG + chr4_4:79369298-79369317 Msa0706400:intron 35.0%
TTCAATCTTCTTTCAAGGGA+GGG + chr4_4:79369299-79369318 Msa0706400:intron 35.0%
ATGTAATTTAAGCATCTCCC+GGG + chr4_4:79369396-79369415 Msa0706400:intron 35.0%
CGTATGGCAATAAAAGGAAA+TGG - chr4_4:79369627-79369646 None:intergenic 35.0%
TAACTAAAAGGACCAATGAG+AGG + chr4_4:79369701-79369720 Msa0706400:intron 35.0%
AAGGTTAGGTCAACAGTTTA+AGG - chr4_4:79369818-79369837 None:intergenic 35.0%
TGGAAAAGCAACTAAAGGTT+AGG - chr4_4:79369832-79369851 None:intergenic 35.0%
CACATTGGAAAAGCAACTAA+AGG - chr4_4:79369837-79369856 None:intergenic 35.0%
!!! CTTTAGTTGCTTTTCCAATG+TGG + chr4_4:79369835-79369854 Msa0706400:intron 35.0%
GGAAGACAACTACAAATAAG+TGG - chr4_4:79369884-79369903 None:intergenic 35.0%
! GCATTTTTACTATGGGAATG+AGG - chr4_4:79370060-79370079 None:intergenic 35.0%
CCCATAGTAAAAATGCTGAA+TGG + chr4_4:79370064-79370083 Msa0706400:intron 35.0%
ACTCTATGTTTCATTCGAAG+TGG + chr4_4:79370348-79370367 Msa0706400:intron 35.0%
TATGTTTCATTCGAAGTGGA+AGG + chr4_4:79370352-79370371 Msa0706400:intron 35.0%
! TATACTGCATGGGGAATTTT+TGG + chr4_4:79370725-79370744 Msa0706400:intron 35.0%
TTACATGGGAATGACAACTA+TGG + chr4_4:79370768-79370787 Msa0706400:intron 35.0%
!!! GCAAGAGGATGCAATTTTTT+TGG - chr4_4:79370858-79370877 None:intergenic 35.0%
TCCTAGTGCTAATGTCTAAT+TGG + chr4_4:79370887-79370906 Msa0706400:intron 35.0%
ACCAATTAGACATTAGCACT+AGG - chr4_4:79370891-79370910 None:intergenic 35.0%
TGTCTAATTGGTATCCTACT+AGG + chr4_4:79370899-79370918 Msa0706400:intron 35.0%
TAATTGGTATCCTACTAGGA+TGG + chr4_4:79370903-79370922 Msa0706400:intron 35.0%
!! CAAGTGCATCTTTTGTTTCT+TGG - chr4_4:79370944-79370963 None:intergenic 35.0%
! AGATGCACTTGTTAAAGCAT+CGG + chr4_4:79370953-79370972 Msa0706400:CDS 35.0%
!! CGATAAGGATTGATAATGGT+AGG - chr4_4:79370980-79370999 None:intergenic 35.0%
CCAACGATAAGGATTGATAA+TGG - chr4_4:79370984-79371003 None:intergenic 35.0%
CCATTATCAATCCTTATCGT+TGG + chr4_4:79370981-79371000 Msa0706400:CDS 35.0%
AAAAAACTACATAAGCCCTG+AGG - chr4_4:79371133-79371152 None:intergenic 35.0%
! AGTACAGTTTGTTCCATTTC+GGG + chr4_4:79371233-79371252 Msa0706400:CDS 35.0%
TGTAAACTTCTTCCTATTGC+AGG + chr4_4:79371324-79371343 Msa0706400:intron 35.0%
CAAAAAACACACAGGATAGG+GGG - chr4_4:79365443-79365462 None:intergenic 40.0%
ATGCAAGAGGAACTTTCACT+TGG + chr4_4:79365617-79365636 Msa0706400:intron 40.0%
CATTCTCTCTGAGCAAACAA+TGG + chr4_4:79365691-79365710 Msa0706400:intron 40.0%
!! GGAAGAGCACAAGATGTTTT+TGG + chr4_4:79365894-79365913 Msa0706400:CDS 40.0%
!!! GAGCACAAGATGTTTTTGGT+TGG + chr4_4:79365898-79365917 Msa0706400:CDS 40.0%
! TTTGGTTGGATTGGAGAAAG+TGG + chr4_4:79365912-79365931 Msa0706400:CDS 40.0%
! TTGGTTGGATTGGAGAAAGT+GGG + chr4_4:79365913-79365932 Msa0706400:CDS 40.0%
AGAAAGTGGGAAAAGGTGAT+TGG + chr4_4:79365926-79365945 Msa0706400:CDS 40.0%
GATGGTGATATCAAAGAGAC+TGG - chr4_4:79366061-79366080 None:intergenic 40.0%
CTTTGATATCACCATCGACA+CGG + chr4_4:79366065-79366084 Msa0706400:CDS 40.0%
CGAAAAAATTACCGTGTCGA+TGG - chr4_4:79366079-79366098 None:intergenic 40.0%
TGTAGCTAGGGACTTTCATT+AGG - chr4_4:79366385-79366404 None:intergenic 40.0%
ATTCAACTTACGGTAAGGTG+GGG - chr4_4:79366475-79366494 None:intergenic 40.0%
GCAGTACACCAAATGATTCA+AGG - chr4_4:79366637-79366656 None:intergenic 40.0%
GAATGAAGATCCTGCAAACT+TGG + chr4_4:79366727-79366746 Msa0706400:intron 40.0%
TCAAATCCAACCAAGTTTGC+AGG - chr4_4:79366740-79366759 None:intergenic 40.0%
! CTGTTATCAAAAGTGTGCGA+AGG - chr4_4:79366845-79366864 None:intergenic 40.0%
TGACTTCAAATCTAGCTGCA+TGG + chr4_4:79366952-79366971 Msa0706400:intron 40.0%
TTCAAATCTAGCTGCATGGT+TGG + chr4_4:79366956-79366975 Msa0706400:intron 40.0%
TCAAATCTAGCTGCATGGTT+GGG + chr4_4:79366957-79366976 Msa0706400:intron 40.0%
TCCATACTAACACAACTTGC+GGG - chr4_4:79367225-79367244 None:intergenic 40.0%
GTCCATACTAACACAACTTG+CGG - chr4_4:79367226-79367245 None:intergenic 40.0%
TTAGGTATCTGCAATTCCAG+TGG + chr4_4:79367520-79367539 Msa0706400:intron 40.0%
!! AGGGATGATTTCTGGTTCTA+TGG - chr4_4:79368456-79368475 None:intergenic 40.0%
GTAATTCAAGCTTCTCATGG+GGG - chr4_4:79368697-79368716 None:intergenic 40.0%
TCTAAGCATCTCTTAGGAGA+GGG - chr4_4:79368798-79368817 None:intergenic 40.0%
ATCTAAGCATCTCTTAGGAG+AGG - chr4_4:79368799-79368818 None:intergenic 40.0%
!! GATTTTAACATTAGAGGGGG+AGG + chr4_4:79369267-79369286 Msa0706400:intron 40.0%
! TTTTAACATTAGAGGGGGAG+GGG + chr4_4:79369269-79369288 Msa0706400:intron 40.0%
TCAATCTTCTTTCAAGGGAG+GGG + chr4_4:79369300-79369319 Msa0706400:intron 40.0%
!!! TATTTTTTGCATGAGAGGGG+AGG + chr4_4:79369340-79369359 Msa0706400:intron 40.0%
!!! ATTTTTTGCATGAGAGGGGA+GGG + chr4_4:79369341-79369360 Msa0706400:intron 40.0%
TGTAATTTAAGCATCTCCCG+GGG + chr4_4:79369397-79369416 Msa0706400:intron 40.0%
TATTCCTGGCAAACTACTAC+AGG - chr4_4:79369488-79369507 None:intergenic 40.0%
GTGAACCGTATGGCAATAAA+AGG - chr4_4:79369633-79369652 None:intergenic 40.0%
GGAAGAAAATGCAACCACAT+TGG - chr4_4:79369852-79369871 None:intergenic 40.0%
ACAAATAAGTGGGGAGATGA+AGG - chr4_4:79369873-79369892 None:intergenic 40.0%
GTTGAACGCAATAAAGCTCT+TGG + chr4_4:79369952-79369971 Msa0706400:intron 40.0%
! TCTGTAGAGTTGCTATTCAG+TGG + chr4_4:79370022-79370041 Msa0706400:intron 40.0%
TACTATGGGAATGAGGATCA+GGG - chr4_4:79370053-79370072 None:intergenic 40.0%
TTACTATGGGAATGAGGATC+AGG - chr4_4:79370054-79370073 None:intergenic 40.0%
!! GATCACAGTTTCTAGAGCTA+GGG + chr4_4:79370285-79370304 Msa0706400:intron 40.0%
!! TTGCTTTGTGCTGCTTACAT+GGG + chr4_4:79370754-79370773 Msa0706400:intron 40.0%
TTAGACATTAGCACTAGGAG+TGG - chr4_4:79370886-79370905 None:intergenic 40.0%
! AGGAGCTGATTTCAAAGAGA+TGG + chr4_4:79371010-79371029 Msa0706400:CDS 40.0%
! AGCTGATTTCAAAGAGATGG+AGG + chr4_4:79371013-79371032 Msa0706400:CDS 40.0%
!! AGTTATAATTGGTTGGCCTG+AGG + chr4_4:79371075-79371094 Msa0706400:intron 40.0%
TGGTATGTAATGTCACCTCA+GGG + chr4_4:79371115-79371134 Msa0706400:intron 40.0%
TTGTTCAATGTCGCAGATCT+TGG + chr4_4:79371152-79371171 Msa0706400:intron 40.0%
GATAGGCTTGAAAGTTCATC+TGG + chr4_4:79371189-79371208 Msa0706400:CDS 40.0%
CTACTTTGAACATCCCGAAA+TGG - chr4_4:79371249-79371268 None:intergenic 40.0%
CATTTCGGGATGTTCAAAGT+AGG + chr4_4:79371247-79371266 Msa0706400:intron 40.0%
AAACTTCTTCCTATTGCAGG+TGG + chr4_4:79371327-79371346 Msa0706400:intron 40.0%
GAAATTTCACCACCTGCAAT+AGG - chr4_4:79371339-79371358 None:intergenic 40.0%
!! CTTCTGGTTTGTAAGGTAGC+AGG + chr4_4:79365471-79365490 Msa0706400:intron 45.0%
GGATTGGAGAAAGTGGGAAA+AGG + chr4_4:79365919-79365938 Msa0706400:CDS 45.0%
GTGATTGGAGAGGAATCTCA+AGG + chr4_4:79365941-79365960 Msa0706400:CDS 45.0%
GACGGCGATTGAGATTACTT+CGG - chr4_4:79366029-79366048 None:intergenic 45.0%
GAAGATCCTGCAAACTTGGT+TGG + chr4_4:79366731-79366750 Msa0706400:intron 45.0%
!! ACGTGGCTTTAGAGTGTGAT+CGG + chr4_4:79368215-79368234 Msa0706400:intron 45.0%
TACCAACTGAGCTAAGCTCA+CGG - chr4_4:79368246-79368265 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr4_4:79368246-79368265 Msa0706400:intron 45.0%
AACATAATAGGGGAGGGGAA+GGG - chr4_4:79368723-79368742 None:intergenic 45.0%
TAACATAATAGGGGAGGGGA+AGG - chr4_4:79368724-79368743 None:intergenic 45.0%
CTAAGCATCTCTTAGGAGAG+GGG - chr4_4:79368797-79368816 None:intergenic 45.0%
!!! TTTTTTGCATGAGAGGGGAG+GGG + chr4_4:79369342-79369361 Msa0706400:intron 45.0%
GTAATTTAAGCATCTCCCGG+GGG + chr4_4:79369398-79369417 Msa0706400:intron 45.0%
GTTGTGTGTAGTGAACCGTA+TGG - chr4_4:79369643-79369662 None:intergenic 45.0%
!! TCAAAAGGTGTTGCCTTGCA+TGG - chr4_4:79369727-79369746 None:intergenic 45.0%
ATGTAAGGGGGCTACTCAAA+AGG - chr4_4:79369742-79369761 None:intergenic 45.0%
! GTGCAATAGTTAGTCTGAGC+TGG + chr4_4:79370263-79370282 Msa0706400:intron 45.0%
!! GGATCACAGTTTCTAGAGCT+AGG + chr4_4:79370284-79370303 Msa0706400:intron 45.0%
!!! GCATGGGGAATTTTTGGAGT+TGG + chr4_4:79370731-79370750 Msa0706400:intron 45.0%
!! GTTGCTTTGTGCTGCTTACA+TGG + chr4_4:79370753-79370772 Msa0706400:intron 45.0%
!! TTGGAATTGTTTGGTGCGCA+AGG - chr4_4:79370839-79370858 None:intergenic 45.0%
CTACTAGGATGGAGTTGTGA+CGG + chr4_4:79370914-79370933 Msa0706400:intron 45.0%
TCAATCCTTATCGTTGGCGT+AGG + chr4_4:79370987-79371006 Msa0706400:CDS 45.0%
GTGGTATGTAATGTCACCTC+AGG + chr4_4:79371114-79371133 Msa0706400:intron 45.0%
CAGATCTTGGATGCAGACAA+AGG + chr4_4:79371165-79371184 Msa0706400:intron 45.0%
TGGATGCAGACAAAGGAGAT+AGG + chr4_4:79371172-79371191 Msa0706400:CDS 45.0%
!! AATATTTATTTATGTAAAAA+TGG - chr4_4:79368866-79368885 None:intergenic 5.0%
!!! GAATTTTAATTATAATAAAA+TGG + chr4_4:79369152-79369171 Msa0706400:intron 5.0%
GGCTGAGAAGAGACTGCTAT+TGG + chr4_4:79365548-79365567 Msa0706400:intron 50.0%
TGAATGGATCAGGGATTCCG+TGG + chr4_4:79365866-79365885 Msa0706400:intron 50.0%
TTGTGCTCTTCCTCAGTCCA+CGG - chr4_4:79365886-79365905 None:intergenic 50.0%
GTGGGAAAAGGTGATTGGAG+AGG + chr4_4:79365931-79365950 Msa0706400:CDS 50.0%
! GCATGACTTGCAACATGCGT+AGG - chr4_4:79365988-79366007 None:intergenic 50.0%
GGCGATTGAGATTACTTCGG+CGG - chr4_4:79366026-79366045 None:intergenic 50.0%
GCCCGCAAGTTGTGTTAGTA+TGG + chr4_4:79367221-79367240 Msa0706400:intron 50.0%
GGTATCTGCAATTCCAGTGG+AGG + chr4_4:79367523-79367542 Msa0706400:intron 50.0%
AATTCCAGTGGAGGCAGAAC+AGG + chr4_4:79367532-79367551 Msa0706400:intron 50.0%
ATATGACCCGTGCGACAACA+CGG + chr4_4:79367656-79367675 Msa0706400:intron 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - chr4_4:79368245-79368264 None:intergenic 50.0%
! GTCTTGTTAACGAGTGCCTC+CGG + chr4_4:79368283-79368302 Msa0706400:intron 50.0%
TCTTGTTAACGAGTGCCTCC+GGG + chr4_4:79368284-79368303 Msa0706400:intron 50.0%
!! AGAATGCTTAAGGAGTGCCC+CGG - chr4_4:79368305-79368324 None:intergenic 50.0%
ACCAGAAATCATCCCTTCGC+CGG + chr4_4:79368460-79368479 Msa0706400:intron 50.0%
AATCACCAATCCCACCTCTC+CGG - chr4_4:79368482-79368501 None:intergenic 50.0%
TTCAAGCTTCTCATGGGGGA+GGG - chr4_4:79368693-79368712 None:intergenic 50.0%
ATTCAAGCTTCTCATGGGGG+AGG - chr4_4:79368694-79368713 None:intergenic 50.0%
! TGTGCCTGTAGTAGTTTGCC+AGG + chr4_4:79369481-79369500 Msa0706400:intron 50.0%
CTAGGAGTGGAAAACGCAAG+AGG - chr4_4:79370873-79370892 None:intergenic 50.0%
CGTCACAACTCCATCCTAGT+AGG - chr4_4:79370916-79370935 None:intergenic 50.0%
ATCCTTATCGTTGGCGTAGG+AGG + chr4_4:79370990-79371009 Msa0706400:CDS 50.0%
! ATCAGGGATTCCGTGGACTG+AGG + chr4_4:79365873-79365892 Msa0706400:intron 55.0%
AGAGACTGGATCTACGGCGA+CGG - chr4_4:79366047-79366066 None:intergenic 55.0%
TTGACCTGTTCTGCCTCCAC+TGG - chr4_4:79367539-79367558 None:intergenic 55.0%
TATGACCCGTGCGACAACAC+GGG + chr4_4:79367657-79367676 Msa0706400:intron 55.0%
ATGTCACCCGTGTTGTCGCA+CGG - chr4_4:79367666-79367685 None:intergenic 55.0%
ATATGACCCGTGCGTCAGCA+CGG + chr4_4:79367829-79367848 Msa0706400:intron 55.0%
TCCCGTGAGCTTAGCTCAGT+TGG + chr4_4:79368241-79368260 Msa0706400:intron 55.0%
CTTGTTAACGAGTGCCTCCG+GGG + chr4_4:79368285-79368304 Msa0706400:intron 55.0%
TCCGGCGAAGGGATGATTTC+TGG - chr4_4:79368464-79368483 None:intergenic 55.0%
AAATCATCCCTTCGCCGGAG+AGG + chr4_4:79368465-79368484 Msa0706400:intron 55.0%
! GAGGTGGGATTGGTGATTCC+TGG + chr4_4:79368484-79368503 Msa0706400:intron 55.0%
TCAAGCTTCTCATGGGGGAG+GGG - chr4_4:79368692-79368711 None:intergenic 55.0%
ATTTAAGCATCTCCCGGGGG+AGG + chr4_4:79369401-79369420 Msa0706400:intron 55.0%
TTTAAGCATCTCCCGGGGGA+GGG + chr4_4:79369402-79369421 Msa0706400:intron 55.0%
GGATATTACAACCCTCCCCC+GGG - chr4_4:79369416-79369435 None:intergenic 55.0%
GGGATATTACAACCCTCCCC+CGG - chr4_4:79369417-79369436 None:intergenic 55.0%
GACCAATGAGAGGCCATGCA+AGG + chr4_4:79369711-79369730 Msa0706400:intron 55.0%
TGCCTTGCATGGCCTCTCAT+TGG - chr4_4:79369716-79369735 None:intergenic 55.0%
CTCCTCCTACGCCAACGATA+AGG - chr4_4:79370995-79371014 None:intergenic 55.0%
TCATCACAGCTAAGCGCCTC+AGG - chr4_4:79371094-79371113 None:intergenic 55.0%
AGGCGCTTAGCTGTGATGAG+TGG + chr4_4:79371095-79371114 Msa0706400:intron 55.0%
TGTCACCCGTGTTGTCGCAC+GGG - chr4_4:79367665-79367684 None:intergenic 60.0%
TATGACCCGTGCGTCAGCAC+GGG + chr4_4:79367830-79367849 Msa0706400:intron 60.0%
!! ATGCTTAAGGAGTGCCCCGG+AGG - chr4_4:79368302-79368321 None:intergenic 60.0%
AATCCCACCTCTCCGGCGAA+GGG - chr4_4:79368475-79368494 None:intergenic 60.0%
! ATCGACCCGTGCTGACGCAC+GGG - chr4_4:79367838-79367857 None:intergenic 65.0%
! CATCGACCCGTGCTGACGCA+CGG - chr4_4:79367839-79367858 None:intergenic 65.0%
TCATCCCTTCGCCGGAGAGG+TGG + chr4_4:79368468-79368487 Msa0706400:intron 65.0%
CATCCCTTCGCCGGAGAGGT+GGG + chr4_4:79368469-79368488 Msa0706400:intron 65.0%
CAATCCCACCTCTCCGGCGA+AGG - chr4_4:79368476-79368495 None:intergenic 65.0%
CTTCGCCGGAGAGGTGGGAT+TGG + chr4_4:79368474-79368493 Msa0706400:intron 65.0%
CGTGCGTCAGCACGGGTCGA+TGG + chr4_4:79367837-79367856 Msa0706400:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79365401 79371440 79365401 ID=Msa0706400;Name=Msa0706400
chr4_4 mRNA 79365401 79371440 79365401 ID=Msa0706400-mRNA-1;Parent=Msa0706400;Name=Msa0706400-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.4|0.75|0.8|5|0|196
chr4_4 exon 79365401 79365476 79365401 ID=Msa0706400-mRNA-1:exon:25506;Parent=Msa0706400-mRNA-1
chr4_4 exon 79365878 79366086 79365878 ID=Msa0706400-mRNA-1:exon:25507;Parent=Msa0706400-mRNA-1
chr4_4 exon 79370921 79371034 79370921 ID=Msa0706400-mRNA-1:exon:25508;Parent=Msa0706400-mRNA-1
chr4_4 exon 79371168 79371264 79371168 ID=Msa0706400-mRNA-1:exon:25509;Parent=Msa0706400-mRNA-1
chr4_4 exon 79371346 79371440 79371346 ID=Msa0706400-mRNA-1:exon:25510;Parent=Msa0706400-mRNA-1
chr4_4 CDS 79365401 79365476 79365401 ID=Msa0706400-mRNA-1:cds;Parent=Msa0706400-mRNA-1
chr4_4 CDS 79365878 79366086 79365878 ID=Msa0706400-mRNA-1:cds;Parent=Msa0706400-mRNA-1
chr4_4 CDS 79370921 79371034 79370921 ID=Msa0706400-mRNA-1:cds;Parent=Msa0706400-mRNA-1
chr4_4 CDS 79371168 79371264 79371168 ID=Msa0706400-mRNA-1:cds;Parent=Msa0706400-mRNA-1
chr4_4 CDS 79371346 79371440 79371346 ID=Msa0706400-mRNA-1:cds;Parent=Msa0706400-mRNA-1
Gene Sequence

>Msa0706400

ATGTTTGTTGCAGAGTTTTTGAGAGCTGTTTTTTGTGTGCCCCCTATCCTGTGTGTTTTTTGTCAATTTGCTTCTGGGATTCCGTGGACTGAGGAAGAGCACAAGATGTTTTTGGTTGGATTGGAGAAAGTGGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAATAAGAACGCCTACGCATGTTGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCATCGACACGGATGGAGTTGTGACGGATCTCCAAGAAACAAAAGATGCACTTGTTAAAGCATCGGACCTACCATTATCAATCCTTATCGTTGGCGTAGGAGGAGCTGATTTCAAAGAGATGGAGATCTTGGATGCAGACAAAGGAGATAGGCTTGAAAGTTCATCTGGACGTGTTGCTTCACGTGATATAGTACAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAATTACCTACTCAATTTTTAGCGTATATGCGGAGCAGAAATATCCAACCAAATCTCTAG

Protein sequence

>Msa0706400

MFVAEFLRAVFCVPPILCVFCQFASGIPWTEEEHKMFLVGLEKVGKGDWRGISRNYVKIRTPTHVASHAQKYFLRRSNLNRRRRRSSLFDITIDTDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGDRLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYMRSRNIQPNL*