AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1240180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240180 MtrunA17_Chr8g0352241 94.048 252 10 2 1 251 1 248 4.38e-166 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240180 AT4G15030.1 61.268 284 68 4 1 251 1 275 1.56e-115 332
Msa1240180 AT4G15030.2 60.069 288 69 5 1 251 1 279 2.79e-112 324
Msa1240180 AT4G15030.3 60.069 288 69 5 1 251 1 279 2.79e-112 324

Find 69 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTCTCTTCACTTTCT+TGG 0.103766 8_2:-22590147 None:intergenic
AAGGAGCTACGATCAGATTT+TGG 0.151297 8_2:-22584511 None:intergenic
TTATCATATGTTTGTAATTT+AGG 0.183093 8_2:-22591010 None:intergenic
GTGCCTACAGTTAGTTTCTA+TGG 0.197234 8_2:+22585998 Msa1240180:intron
AACAAAGGTTTGAGATTTAT+TGG 0.205401 8_2:-22584487 None:intergenic
GCTAGTTGAAAATTTGTAAA+AGG 0.233730 8_2:+22584341 Msa1240180:five_prime_UTR
CGAAGAGAGGATTGCGAAAC+TGG 0.237898 8_2:+22584434 Msa1240180:five_prime_UTR
TATCAGGCTTTAATAAAATA+TGG 0.246167 8_2:+22591265 Msa1240180:three_prime_UTR
AGTAAATTTATCCATTTATC+AGG 0.248320 8_2:+22591249 Msa1240180:three_prime_UTR
CAAACAAGCTCTAGTTAAAT+TGG 0.261931 8_2:+22588881 Msa1240180:CDS
AATTTCATAACTGCATTAAT+AGG 0.277094 8_2:-22591174 None:intergenic
GAAGAATCTGCTACATGTTC+TGG 0.308849 8_2:+22591206 Msa1240180:three_prime_UTR
TGAAAATTTGTAAAAGGATA+AGG 0.316540 8_2:+22584347 Msa1240180:five_prime_UTR
TTGTAATTGCAGACAGTATC+AGG 0.337345 8_2:+22584671 Msa1240180:intron
GAGCTGGTAAACATGGAAAA+AGG 0.365567 8_2:+22590947 Msa1240180:three_prime_UTR
GAAAATTTGTAAAAGGATAA+GGG 0.391098 8_2:+22584348 Msa1240180:five_prime_UTR
ACAAAGGTTTGAGATTTATT+GGG 0.407887 8_2:-22584486 None:intergenic
ACACGCTAAGAGAGGGATAT+AGG 0.410948 8_2:+22586071 Msa1240180:CDS
CTAAAATTGCTTAATATACT+AGG 0.424715 8_2:+22591094 Msa1240180:three_prime_UTR
ATAGGCAACTTTAAGGTTGA+AGG 0.433714 8_2:-22586034 None:intergenic
AGTGAAGAGAGAAGGAGAAA+AGG 0.434606 8_2:+22590154 Msa1240180:CDS
ACCAGCCTTTGCTCCCATGA+TGG 0.442891 8_2:-22586756 None:intergenic
TCATTCACCATGACATCGTT+GGG 0.455151 8_2:+22584536 Msa1240180:exon
TTCGAAGAGTGATGATGATC+TGG 0.455182 8_2:+22590117 Msa1240180:CDS
ACGGTCAGAGGAAGATGATA+TGG 0.473518 8_2:+22586731 Msa1240180:CDS
TGCCTACAGTTAGTTTCTAT+GGG 0.476952 8_2:+22585999 Msa1240180:intron
TTCATTCACCATGACATCGT+TGG 0.490206 8_2:+22584535 Msa1240180:exon
AAGCATTGCAATGAGAAAGA+TGG 0.492067 8_2:+22588272 Msa1240180:CDS
AACATAGACGAGTTTCTTGA+GGG 0.498571 8_2:+22590863 Msa1240180:CDS
AATGTGTTGCAAGATTTATA+CGG 0.500196 8_2:+22586712 Msa1240180:intron
TCCATCATGGGAGCAAAGGC+TGG 0.509246 8_2:+22586755 Msa1240180:CDS
AAGATGATATGGATCCATCA+TGG 0.516160 8_2:+22586742 Msa1240180:CDS
ACAGAGAAGGAAGTCATGTC+TGG 0.518399 8_2:+22587646 Msa1240180:CDS
CAAAGGTTTGAGATTTATTG+GGG 0.529267 8_2:-22584485 None:intergenic
CAGTATCAGGCTCATATTCG+AGG 0.531781 8_2:+22584684 Msa1240180:CDS
ATGTAGCAGATTCTTCTACT+TGG 0.539283 8_2:-22591199 None:intergenic
GATGTCATGGTGAATGAAGA+AGG 0.541902 8_2:-22584530 None:intergenic
AGAAAGAAGACAACAAAAGC+TGG 0.545344 8_2:+22589985 Msa1240180:CDS
TGGATCCATCATGGGAGCAA+AGG 0.551016 8_2:+22586751 Msa1240180:CDS
GCATTTCTTGAGACAAGAGC+TGG 0.553229 8_2:+22590931 Msa1240180:three_prime_UTR
GAGACAAGAGCTGGTAAACA+TGG 0.557097 8_2:+22590940 Msa1240180:three_prime_UTR
TAGGCAGTGCTGGGAGCAAG+TGG 0.564184 8_2:+22590971 Msa1240180:three_prime_UTR
TTTAGTGTCAACAAGTTCGA+AGG 0.565832 8_2:-22591076 None:intergenic
GCCAAGAAAGTGAAGAGAGA+AGG 0.566074 8_2:+22590146 Msa1240180:CDS
TAACATAGACGAGTTTCTTG+AGG 0.575423 8_2:+22590862 Msa1240180:CDS
CAGAGATCCCAACGATGTCA+TGG 0.577645 8_2:-22584543 None:intergenic
TGCAAGATTTATACGGTCAG+AGG 0.578191 8_2:+22586719 Msa1240180:intron
CTACAAGAGGCAGAAAGAGA+AGG 0.586951 8_2:+22589955 Msa1240180:CDS
CAGGGAAACTTAACTACAAG+AGG 0.589540 8_2:+22589942 Msa1240180:CDS
GAGTGATGATGATCTGGACG+AGG 0.591426 8_2:+22590123 Msa1240180:CDS
AGATGATATGGATCCATCAT+GGG 0.599854 8_2:+22586743 Msa1240180:CDS
AAGGTTTGAGATTTATTGGG+GGG 0.601439 8_2:-22584483 None:intergenic
CTCTTCTCTGTCGAATATCG+CGG 0.603692 8_2:-22584570 None:intergenic
TCAACTAGCACTTAAACGAG+TGG 0.605889 8_2:-22584327 None:intergenic
TGCTTAATATACTAGGCAGA+AGG 0.608974 8_2:+22591101 Msa1240180:three_prime_UTR
TGGGAGCAAGTGGATAATGC+AGG 0.609766 8_2:+22590981 Msa1240180:three_prime_UTR
TCTCAGATGGAGAACAGAGA+AGG 0.612843 8_2:+22587633 Msa1240180:CDS
AAGGAAGTCATGTCTGGCAA+AGG 0.614471 8_2:+22587652 Msa1240180:CDS
AGATAAAGACACGCTAAGAG+AGG 0.617719 8_2:+22586063 Msa1240180:CDS
AAAAGCTGGACAGAAGAAAG+AGG 0.623216 8_2:+22589999 Msa1240180:CDS
GATAAAGACACGCTAAGAGA+GGG 0.626505 8_2:+22586064 Msa1240180:CDS
GTCACAGTACAAGAGTGGTA+AGG 0.635278 8_2:+22587425 Msa1240180:CDS
ATTACAGGTCAGTTTATATG+CGG 0.641502 8_2:+22588245 Msa1240180:intron
TTAAATTGGTAGCATGTGAG+AGG 0.651772 8_2:+22588895 Msa1240180:CDS
GACATGTCACAGTACAAGAG+TGG 0.670486 8_2:+22587420 Msa1240180:CDS
AGTGATGATGATCTGGACGA+GGG 0.693469 8_2:+22590124 Msa1240180:CDS
AAAGGTTTGAGATTTATTGG+GGG 0.697684 8_2:-22584484 None:intergenic
ACATAGACGAGTTTCTTGAG+GGG 0.714392 8_2:+22590864 Msa1240180:CDS
AGATGGATTAGCAAGCTACG+AGG 0.761444 8_2:+22588289 Msa1240180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAAGATATTCATA+TGG - chr8_2:22586608-22586627 None:intergenic 10.0%
!!! TATGAATATCTTTTATTATT+TGG + chr8_2:22586608-22586627 Msa1240180:intron 10.0%
!! TTTACTAAATATTTATATTG+AGG + chr8_2:22586831-22586850 Msa1240180:intron 10.0%
!! ACTAAAAAAAATATATTATG+GGG - chr8_2:22587540-22587559 None:intergenic 10.0%
!! GACTAAAAAAAATATATTAT+GGG - chr8_2:22587541-22587560 None:intergenic 10.0%
!! AGACTAAAAAAAATATATTA+TGG - chr8_2:22587542-22587561 None:intergenic 10.0%
!!! AAAACAAAACCTAATTTTTT+TGG + chr8_2:22584405-22584424 Msa1240180:five_prime_UTR 15.0%
!! AAACAGGAAAAAATAAAAAA+TGG - chr8_2:22585349-22585368 None:intergenic 15.0%
!!! ATTTTTTATTTTTTCCTGTT+TGG + chr8_2:22585348-22585367 Msa1240180:intron 15.0%
!!! TTTTTTATTTTTTCCTGTTT+GGG + chr8_2:22585349-22585368 Msa1240180:intron 15.0%
!!! TAATAGATACAATTTGTTAA+TGG + chr8_2:22585583-22585602 Msa1240180:intron 15.0%
!!! AATAGATACAATTTGTTAAT+GGG + chr8_2:22585584-22585603 Msa1240180:intron 15.0%
!!! ACAACTTTTATATATTTTTC+AGG + chr8_2:22587015-22587034 Msa1240180:intron 15.0%
!!! TTTTATATATTTTTCAGGAT+TGG + chr8_2:22587020-22587039 Msa1240180:intron 15.0%
!!! TTTATATATTTTTCAGGATT+GGG + chr8_2:22587021-22587040 Msa1240180:intron 15.0%
!! CAAAATTTATACATTGTTTA+TGG + chr8_2:22587072-22587091 Msa1240180:intron 15.0%
!! TATCACATAAGTATAAAATA+GGG - chr8_2:22587149-22587168 None:intergenic 15.0%
!! ATATCACATAAGTATAAAAT+AGG - chr8_2:22587150-22587169 None:intergenic 15.0%
!!! ATTTTATACTTATGTGATAT+TGG + chr8_2:22587150-22587169 Msa1240180:intron 15.0%
!! TTATGAAGATGATTAAAAAT+TGG - chr8_2:22588023-22588042 None:intergenic 15.0%
!! ATTAAAAGTTAAAACATTTC+TGG + chr8_2:22589342-22589361 Msa1240180:intron 15.0%
!!! TATTTTCTATTTTTGAATGA+AGG - chr8_2:22589416-22589435 None:intergenic 15.0%
!! AGATTTAATTAAACTAATAC+AGG - chr8_2:22589486-22589505 None:intergenic 15.0%
!! AAATTACAAAAACAGATTTA+TGG - chr8_2:22589622-22589641 None:intergenic 15.0%
!! TAATAGTTAACTTAAATGTT+TGG + chr8_2:22590696-22590715 Msa1240180:intron 15.0%
!! TGAAAATACATGTTAATTAA+AGG - chr8_2:22590777-22590796 None:intergenic 15.0%
!!! TTTAATTAACATGTATTTTC+AGG + chr8_2:22590776-22590795 Msa1240180:intron 15.0%
!! TTATCATATGTTTGTAATTT+AGG - chr8_2:22591013-22591032 None:intergenic 15.0%
!! TGAAAATTTGTAAAAGGATA+AGG + chr8_2:22584347-22584366 Msa1240180:five_prime_UTR 20.0%
!! GAAAATTTGTAAAAGGATAA+GGG + chr8_2:22584348-22584367 Msa1240180:five_prime_UTR 20.0%
!! AAAAAGTTTATCAACGATTA+CGG + chr8_2:22584729-22584748 Msa1240180:CDS 20.0%
!!! CAATTTTCTTCTAAATAAGT+TGG + chr8_2:22585084-22585103 Msa1240180:intron 20.0%
!! ACAATAGGATTAATCAAATT+TGG + chr8_2:22585377-22585396 Msa1240180:intron 20.0%
!!! ATTTTTCTATTTCTAAGCAA+AGG - chr8_2:22586429-22586448 None:intergenic 20.0%
!! TTTGCTTAGAAATAGAAAAA+TGG + chr8_2:22586428-22586447 Msa1240180:intron 20.0%
!! TTGCTTAGAAATAGAAAAAT+GGG + chr8_2:22586429-22586448 Msa1240180:intron 20.0%
!!! TTATTATGCTAAGCTTTTTA+AGG + chr8_2:22586785-22586804 Msa1240180:CDS 20.0%
!! GTAAAAAAATAATTGTGCAA+AGG - chr8_2:22586816-22586835 None:intergenic 20.0%
!!! CACTATTTTTGTTAAAAACA+TGG - chr8_2:22586963-22586982 None:intergenic 20.0%
!!! TGTTTTTATAGTCTATTACT+AGG + chr8_2:22586981-22587000 Msa1240180:intron 20.0%
!!! ATAAAATAGGGTGATATTTT+TGG - chr8_2:22587137-22587156 None:intergenic 20.0%
!! TATGCAGATTATATCTTTAA+AGG + chr8_2:22587574-22587593 Msa1240180:intron 20.0%
!!! AATTGCATATTTTTGTAGAT+TGG + chr8_2:22587610-22587629 Msa1240180:intron 20.0%
!!! AAATAGTTCTAGTTAAACAT+GGG - chr8_2:22587734-22587753 None:intergenic 20.0%
!!! TTCAAAAAACAAATGCTTTT+TGG + chr8_2:22587752-22587771 Msa1240180:intron 20.0%
!! AAATAGAAGATGTAAACTAT+GGG - chr8_2:22587931-22587950 None:intergenic 20.0%
!! ATAGATTGATTAATGGTAAT+GGG - chr8_2:22588327-22588346 None:intergenic 20.0%
!! AATAGATTGATTAATGGTAA+TGG - chr8_2:22588328-22588347 None:intergenic 20.0%
!! TAGTCAAATAGATTGATTAA+TGG - chr8_2:22588334-22588353 None:intergenic 20.0%
!! AGATATAGCGTAAATTATAT+TGG + chr8_2:22588475-22588494 Msa1240180:intron 20.0%
!!! AATGCATTATGCTATTTATT+AGG + chr8_2:22588556-22588575 Msa1240180:intron 20.0%
!! TATTAATTGAGTTTGTGATA+TGG + chr8_2:22588657-22588676 Msa1240180:intron 20.0%
!! ATTTGAACACATCTAATTTA+AGG + chr8_2:22589208-22589227 Msa1240180:intron 20.0%
!! TTTGAACACATCTAATTTAA+GGG + chr8_2:22589209-22589228 Msa1240180:intron 20.0%
!! TAATAATAAGACATTTCCAA+AGG - chr8_2:22589326-22589345 None:intergenic 20.0%
!! AACAACTAGTAATATTATTG+AGG - chr8_2:22589534-22589553 None:intergenic 20.0%
!! CAAATTACAAAAATAGTACA+TGG - chr8_2:22589596-22589615 None:intergenic 20.0%
!! AAAATCACAAAAATAGTATG+TGG - chr8_2:22589645-22589664 None:intergenic 20.0%
!!! TGTTCATTTGAAGATTATTT+TGG + chr8_2:22589758-22589777 Msa1240180:intron 20.0%
!!! GTAATCTCAATTTTGTAAAA+AGG - chr8_2:22589789-22589808 None:intergenic 20.0%
!! AACCAATAAATAAATGAAAC+CGG - chr8_2:22589906-22589925 None:intergenic 20.0%
!! AATCAAAATGCTAAAATAAC+CGG - chr8_2:22590265-22590284 None:intergenic 20.0%
!!! AACAGATTAGTTAAAAATCA+GGG - chr8_2:22590896-22590915 None:intergenic 20.0%
!! CTAAAATTGCTTAATATACT+AGG + chr8_2:22591094-22591113 Msa1240180:three_prime_UTR 20.0%
!! AATTTCATAACTGCATTAAT+AGG - chr8_2:22591177-22591196 None:intergenic 20.0%
!! AGTAAATTTATCCATTTATC+AGG + chr8_2:22591249-22591268 Msa1240180:three_prime_UTR 20.0%
!!! TTTTATTAAAGCCTGATAAA+TGG - chr8_2:22591263-22591282 None:intergenic 20.0%
!!! TATCAGGCTTTAATAAAATA+TGG + chr8_2:22591265-22591284 Msa1240180:three_prime_UTR 20.0%
!! ACAAAAAATGTCTGATTATT+TGG + chr8_2:22591298-22591317 Msa1240180:three_prime_UTR 20.0%
! GCTAGTTGAAAATTTGTAAA+AGG + chr8_2:22584341-22584360 Msa1240180:five_prime_UTR 25.0%
!!! AAATTAGGTTTTGTTTTTGC+TGG - chr8_2:22584402-22584421 None:intergenic 25.0%
! TCGATTCTACCAAAAAAATT+AGG - chr8_2:22584417-22584436 None:intergenic 25.0%
!! ACAAAGGTTTGAGATTTATT+GGG - chr8_2:22584489-22584508 None:intergenic 25.0%
!! AACAAAGGTTTGAGATTTAT+TGG - chr8_2:22584490-22584509 None:intergenic 25.0%
!!! AATCGTTGATAAACTTTTTG+TGG - chr8_2:22584728-22584747 None:intergenic 25.0%
! ATTACAGTAACCAATGAAAT+CGG - chr8_2:22584844-22584863 None:intergenic 25.0%
! GAAAACATCTTACAACTTAT+AGG - chr8_2:22584933-22584952 None:intergenic 25.0%
!! GATGTTTTCATAAGCTATTT+TGG + chr8_2:22584944-22584963 Msa1240180:intron 25.0%
! TTCAAATAAGTCAATCCTAA+TGG + chr8_2:22585044-22585063 Msa1240180:intron 25.0%
! ATAAATGATAAGTGTCCATT+AGG - chr8_2:22585062-22585081 None:intergenic 25.0%
!!! TTTCTTCTAAATAAGTTGGT+TGG + chr8_2:22585088-22585107 Msa1240180:intron 25.0%
!!! TGATATTCGAACTGTTTTTT+TGG + chr8_2:22585320-22585339 Msa1240180:intron 25.0%
!! CAAATTTGGAGATATTGATT+TGG + chr8_2:22585391-22585410 Msa1240180:intron 25.0%
! AAAAACAAAAATGACATGCA+CGG - chr8_2:22585523-22585542 None:intergenic 25.0%
! AAATCTTTCTGTTCTTGAAT+TGG - chr8_2:22585558-22585577 None:intergenic 25.0%
!!! ATAAAAGTCCTTTTTCAATG+TGG - chr8_2:22585754-22585773 None:intergenic 25.0%
! TTAATCTCAGAAGAATTCAT+CGG - chr8_2:22585972-22585991 None:intergenic 25.0%
!!! TGTTTTAATAGGCAACTTTA+AGG - chr8_2:22586044-22586063 None:intergenic 25.0%
!!! GTGTCTTTATCTGTTTTAAT+AGG - chr8_2:22586055-22586074 None:intergenic 25.0%
! GGAAAAATAAGACAATATTG+AGG - chr8_2:22586156-22586175 None:intergenic 25.0%
! CAAGTTTCTTGTAATAAAAG+AGG - chr8_2:22586177-22586196 None:intergenic 25.0%
! TACTGGTATTAAAAAGAAGA+TGG - chr8_2:22586260-22586279 None:intergenic 25.0%
!!! GATCTTTGGTGTATTTTATT+TGG + chr8_2:22586386-22586405 Msa1240180:intron 25.0%
! AAAAATAAAACAGAACCCTA+AGG + chr8_2:22586519-22586538 Msa1240180:intron 25.0%
! TATAAATCTTGCAACACATT+TGG - chr8_2:22586712-22586731 None:intergenic 25.0%
! AATGTGTTGCAAGATTTATA+CGG + chr8_2:22586712-22586731 Msa1240180:intron 25.0%
!!! ATTTGCCCAATTTTGTTTAT+TGG + chr8_2:22587109-22587128 Msa1240180:intron 25.0%
!!! TTTGCCCAATTTTGTTTATT+GGG + chr8_2:22587110-22587129 Msa1240180:intron 25.0%
!!! TTGGGTTTTGATTATAGATT+TGG + chr8_2:22587175-22587194 Msa1240180:intron 25.0%
!! ATAGATTTGGTTGAATTAGT+TGG + chr8_2:22587188-22587207 Msa1240180:intron 25.0%
!! TCTAAAATGGCTTATATGAA+AGG + chr8_2:22587298-22587317 Msa1240180:intron 25.0%
! CAGTATCTTAAAAGGATTTA+AGG - chr8_2:22587393-22587412 None:intergenic 25.0%
!!! GCATTTAGAATATTTTTTCG+TGG + chr8_2:22587461-22587480 Msa1240180:intron 25.0%
! CAAGGTTCAAAATTACTAAA+AGG - chr8_2:22587503-22587522 None:intergenic 25.0%
!!! GAAATAGTTCTAGTTAAACA+TGG - chr8_2:22587735-22587754 None:intergenic 25.0%
! TTCTCCCACAAAAAAAAAAA+AGG + chr8_2:22587853-22587872 Msa1240180:intron 25.0%
!!! CCATCCTTTTTTTTTTTTGT+GGG - chr8_2:22587860-22587879 None:intergenic 25.0%
!!! ACCATCCTTTTTTTTTTTTG+TGG - chr8_2:22587861-22587880 None:intergenic 25.0%
! GAAATAGAAGATGTAAACTA+TGG - chr8_2:22587932-22587951 None:intergenic 25.0%
! TATAACAAATTAAAGACAGC+TGG - chr8_2:22588180-22588199 None:intergenic 25.0%
! CGTTAACTTCAAAATTGAAT+AGG - chr8_2:22588214-22588233 None:intergenic 25.0%
! AACGTTTCACATAATATTAC+AGG + chr8_2:22588230-22588249 Msa1240180:intron 25.0%
!! GTTTTTCCTAATGTTTTCTA+CGG - chr8_2:22588413-22588432 None:intergenic 25.0%
! GATCATCAGAAATTATAGTA+AGG - chr8_2:22588448-22588467 None:intergenic 25.0%
! AAGCAAATAGAATAAAAGAG+TGG - chr8_2:22588819-22588838 None:intergenic 25.0%
!!! AACTTTTGTTATTTTGAAGC+AGG + chr8_2:22588852-22588871 Msa1240180:CDS 25.0%
!!! ATCAGTTGATGAAGAAATTA+AGG + chr8_2:22589006-22589025 Msa1240180:intron 25.0%
! AAACATTTAACAAATATGGC+AGG - chr8_2:22589146-22589165 None:intergenic 25.0%
! GAGCAAACATTTAACAAATA+TGG - chr8_2:22589150-22589169 None:intergenic 25.0%
! TTATATACAATAACCAGAAG+AGG - chr8_2:22589172-22589191 None:intergenic 25.0%
! TTGATTATATCATTATCACC+TGG + chr8_2:22589279-22589298 Msa1240180:intron 25.0%
!! AATATGATAATGTATGTTCG+TGG + chr8_2:22589432-22589451 Msa1240180:intron 25.0%
! ACAAAAATAGTACATGGAAA+TGG - chr8_2:22589590-22589609 None:intergenic 25.0%
! AAAAACCTTAATGACTTGAA+AGG - chr8_2:22589836-22589855 None:intergenic 25.0%
! TTAAATAATTGAAGGTTGTC+AGG + chr8_2:22589869-22589888 Msa1240180:intron 25.0%
! TTCCGGTTTCATTTATTTAT+TGG + chr8_2:22589901-22589920 Msa1240180:intron 25.0%
!! TTATTTTCAATAGATGTGCA+GGG + chr8_2:22589924-22589943 Msa1240180:intron 25.0%
! AATAAGAGGAAAATAAGAAG+GGG - chr8_2:22590054-22590073 None:intergenic 25.0%
! CAATAAGAGGAAAATAAGAA+GGG - chr8_2:22590055-22590074 None:intergenic 25.0%
! TCAATAAGAGGAAAATAAGA+AGG - chr8_2:22590056-22590075 None:intergenic 25.0%
!! ACGTATTTTCATTCAATAAG+AGG - chr8_2:22590068-22590087 None:intergenic 25.0%
! TGATGTAAAATAGCCATAAA+AGG - chr8_2:22590189-22590208 None:intergenic 25.0%
!!! TTTTATGGCTATTTTACATC+AGG + chr8_2:22590188-22590207 Msa1240180:intron 25.0%
!! GATATGAAACTCTGTATTTT+CGG + chr8_2:22590210-22590229 Msa1240180:intron 25.0%
!! CTAGTTCTTACTAAAAGAAA+CGG - chr8_2:22590379-22590398 None:intergenic 25.0%
!! TGTATTTGCATCTTTTGTAA+TGG + chr8_2:22590502-22590521 Msa1240180:intron 25.0%
! ACAATGTTTCACATCATAAT+AGG - chr8_2:22590564-22590583 None:intergenic 25.0%
! AAAACATTTCCTAGTAGTAT+TGG - chr8_2:22590590-22590609 None:intergenic 25.0%
!! AATGTTTTATATGCCAACAA+TGG + chr8_2:22590602-22590621 Msa1240180:intron 25.0%
!! ATGTTTTATATGCCAACAAT+GGG + chr8_2:22590603-22590622 Msa1240180:intron 25.0%
!! ATCATCAATTTTATGATCAC+TGG - chr8_2:22590822-22590841 None:intergenic 25.0%
!! CAACAGATTAGTTAAAAATC+AGG - chr8_2:22590897-22590916 None:intergenic 25.0%
!!! TTTGTTTTTGCTGGTTATAC+AGG - chr8_2:22584393-22584412 None:intergenic 30.0%
! AAAGGTTTGAGATTTATTGG+GGG - chr8_2:22584487-22584506 None:intergenic 30.0%
! CAAAGGTTTGAGATTTATTG+GGG - chr8_2:22584488-22584507 None:intergenic 30.0%
GATTTATCGAAGAATGAATG+AGG - chr8_2:22584630-22584649 None:intergenic 30.0%
ATGAGAAACAGAAACAAGTT+AGG - chr8_2:22584652-22584671 None:intergenic 30.0%
!! TGTTTTTGAACCGATTTCAT+TGG + chr8_2:22584831-22584850 Msa1240180:intron 30.0%
ACTTATTTGAACTTCTCAAC+TGG - chr8_2:22585035-22585054 None:intergenic 30.0%
AACTTATAAGCTCTCTCAAA+CGG + chr8_2:22585226-22585245 Msa1240180:intron 30.0%
!!! TATTTTTTCCTGTTTGGGAA+TGG + chr8_2:22585354-22585373 Msa1240180:intron 30.0%
!! TTTGGAGATATTGATTTGGT+TGG + chr8_2:22585395-22585414 Msa1240180:intron 30.0%
TCTTAATGTCCTACAGTAAA+TGG + chr8_2:22585418-22585437 Msa1240180:intron 30.0%
!! ATGCTTATATTGGTTTCCTA+CGG + chr8_2:22585619-22585638 Msa1240180:intron 30.0%
!! TTTTGATTCAAATGACCTTC+AGG + chr8_2:22585718-22585737 Msa1240180:intron 30.0%
ATCTTGCCATATGTATGATA+AGG + chr8_2:22586104-22586123 Msa1240180:intron 30.0%
AAATTGTACTATGACACCAA+AGG - chr8_2:22586310-22586329 None:intergenic 30.0%
! CTGATTTTTCTCTTATAGCA+AGG - chr8_2:22586366-22586385 None:intergenic 30.0%
! CTTGCTATAAGAGAAAAATC+AGG + chr8_2:22586364-22586383 Msa1240180:intron 30.0%
AAGAGAAAAATCAGGATCTT+TGG + chr8_2:22586372-22586391 Msa1240180:intron 30.0%
ATTTCAATAGTCATGCCTTA+GGG - chr8_2:22586537-22586556 None:intergenic 30.0%
TCAACATTTGCTCAATTTCT+AGG - chr8_2:22586906-22586925 None:intergenic 30.0%
TGGTCCCAATAAACAAAATT+GGG - chr8_2:22587117-22587136 None:intergenic 30.0%
TTGGTCCCAATAAACAAAAT+TGG - chr8_2:22587118-22587137 None:intergenic 30.0%
TACTTATGTGATATTGGCAT+TGG + chr8_2:22587156-22587175 Msa1240180:intron 30.0%
ACTTATGTGATATTGGCATT+GGG + chr8_2:22587157-22587176 Msa1240180:intron 30.0%
! AATCCATTAGCTCTTACATA+CGG - chr8_2:22587220-22587239 None:intergenic 30.0%
! AAGCTCTGTTTACTAGATTT+TGG + chr8_2:22587256-22587275 Msa1240180:intron 30.0%
GATGGTAATTGTGAGTTTAA+TGG - chr8_2:22587828-22587847 None:intergenic 30.0%
CCCACAAAAAAAAAAAAGGA+TGG + chr8_2:22587857-22587876 Msa1240180:intron 30.0%
TGTAAACTATGGGATTCATA+CGG - chr8_2:22587921-22587940 None:intergenic 30.0%
! ATTTAAAACTCAACTCTTGC+AGG + chr8_2:22588059-22588078 Msa1240180:intron 30.0%
GACAGGTAAGTGAAAAATAT+AGG - chr8_2:22588128-22588147 None:intergenic 30.0%
ATTACAGGTCAGTTTATATG+CGG + chr8_2:22588245-22588264 Msa1240180:intron 30.0%
TTGAAGTTAACCCAATCAAA+AGG + chr8_2:22588376-22588395 Msa1240180:intron 30.0%
TGAAGTTAACCCAATCAAAA+GGG + chr8_2:22588377-22588396 Msa1240180:intron 30.0%
AATTATAGTAAGGTTCTTCC+TGG - chr8_2:22588438-22588457 None:intergenic 30.0%
ATCACATTTACATGAAACAC+TGG - chr8_2:22588606-22588625 None:intergenic 30.0%
AGAATAAAAGAGTGGAAACA+TGG - chr8_2:22588811-22588830 None:intergenic 30.0%
TTCTATTTGCTTCATGTTAC+AGG + chr8_2:22588827-22588846 Msa1240180:intron 30.0%
! CAAACAAGCTCTAGTTAAAT+TGG + chr8_2:22588881-22588900 Msa1240180:CDS 30.0%
ATGGATTCAGAAGAAAACAA+TGG - chr8_2:22588960-22588979 None:intergenic 30.0%
GTGTACCAATAACAAATCAT+CGG + chr8_2:22589042-22589061 Msa1240180:intron 30.0%
!! ATACACCGATGATTTGTTAT+TGG - chr8_2:22589050-22589069 None:intergenic 30.0%
AAAGTTCTTGTTAGTTGCAT+GGG + chr8_2:22589253-22589272 Msa1240180:intron 30.0%
!!! GCATATACTGATTTTTTTCC+AGG - chr8_2:22589300-22589319 None:intergenic 30.0%
! GTGATTTTTAATGATTGCCT+TGG + chr8_2:22589657-22589676 Msa1240180:intron 30.0%
TGTAAATTCAAATTCGTCCA+AGG - chr8_2:22589677-22589696 None:intergenic 30.0%
CAAATGAACACATAAATAGC+AGG - chr8_2:22589748-22589767 None:intergenic 30.0%
ATTGAGATTACTCATCACTT+TGG + chr8_2:22589798-22589817 Msa1240180:intron 30.0%
TTGTCAGGTAAATCAAATTC+CGG + chr8_2:22589884-22589903 Msa1240180:intron 30.0%
!! GTTATTTTCAATAGATGTGC+AGG + chr8_2:22589923-22589942 Msa1240180:intron 30.0%
ATAAGAGGAAAATAAGAAGG+GGG - chr8_2:22590053-22590072 None:intergenic 30.0%
GATTGAATCCTTTCAATTGT+AGG + chr8_2:22590089-22590108 Msa1240180:intron 30.0%
!! AAGGTTTGAAGTTCCTTTTA+TGG + chr8_2:22590173-22590192 Msa1240180:intron 30.0%
!!! TCATCATTTGTTTTTGTTGC+AGG + chr8_2:22590234-22590253 Msa1240180:intron 30.0%
! CGTTTCTTTTAGTAAGAACT+AGG + chr8_2:22590377-22590396 Msa1240180:intron 30.0%
! TCTTTTAGTAAGAACTAGGA+AGG + chr8_2:22590381-22590400 Msa1240180:intron 30.0%
GCACTTATCATTGTAAATCT+AGG - chr8_2:22590407-22590426 None:intergenic 30.0%
! TAGTAGTCTTACAAGTATGT+TGG + chr8_2:22590464-22590483 Msa1240180:intron 30.0%
CATTGTTTACCAATACTACT+AGG + chr8_2:22590578-22590597 Msa1240180:intron 30.0%
AGTTCATAGCAGTAAATGTT+AGG - chr8_2:22590751-22590770 None:intergenic 30.0%
!! AACATGTATTTTCAGGAAAG+AGG + chr8_2:22590783-22590802 Msa1240180:intron 30.0%
!! ACATGTATTTTCAGGAAAGA+GGG + chr8_2:22590784-22590803 Msa1240180:intron 30.0%
!!! AAGAAATGCTTTTCAGGTAA+TGG - chr8_2:22590920-22590939 None:intergenic 30.0%
!! TTTTGCTGGTTATACAGGTA+AGG - chr8_2:22584388-22584407 None:intergenic 35.0%
!! TTTTTGGTAGAATCGAAGAG+AGG + chr8_2:22584421-22584440 Msa1240180:five_prime_UTR 35.0%
! AAGGTTTGAGATTTATTGGG+GGG - chr8_2:22584486-22584505 None:intergenic 35.0%
TATCGAAGAATGAATGAGGA+GGG - chr8_2:22584626-22584645 None:intergenic 35.0%
TTATCGAAGAATGAATGAGG+AGG - chr8_2:22584627-22584646 None:intergenic 35.0%
TTGTAATTGCAGACAGTATC+AGG + chr8_2:22584671-22584690 Msa1240180:intron 35.0%
!!! AAGCTATTTTGGTGAGCTTA+TGG + chr8_2:22584955-22584974 Msa1240180:intron 35.0%
GTTCATCATCCATTTACTGT+AGG - chr8_2:22585430-22585449 None:intergenic 35.0%
ATGAACAGTCTTCTCCATTA+AGG + chr8_2:22585444-22585463 Msa1240180:intron 35.0%
AGTCTTCTCCATTAAGGAAA+AGG + chr8_2:22585450-22585469 Msa1240180:intron 35.0%
TTCTCCATTAAGGAAAAGGA+AGG + chr8_2:22585454-22585473 Msa1240180:intron 35.0%
TCTTTCTGTTCTTGAATTGG+TGG - chr8_2:22585555-22585574 None:intergenic 35.0%
!! TTTGTTAATGGGTTTGTGAC+TGG + chr8_2:22585595-22585614 Msa1240180:intron 35.0%
!! TTGTTAATGGGTTTGTGACT+GGG + chr8_2:22585596-22585615 Msa1240180:intron 35.0%
TTCAAATGACCTTCAGGATT+TGG + chr8_2:22585724-22585743 Msa1240180:intron 35.0%
ATGTCAGAATCAGATTTCCA+TGG + chr8_2:22585899-22585918 Msa1240180:intron 35.0%
! TGCCTACAGTTAGTTTCTAT+GGG + chr8_2:22585999-22586018 Msa1240180:intron 35.0%
TTCCCATAGAAACTAACTGT+AGG - chr8_2:22586004-22586023 None:intergenic 35.0%
!! ATAGGCAACTTTAAGGTTGA+AGG - chr8_2:22586037-22586056 None:intergenic 35.0%
TGCCATATGTATGATAAGGA+TGG + chr8_2:22586108-22586127 Msa1240180:intron 35.0%
CACCATCCTTATCATACATA+TGG - chr8_2:22586113-22586132 None:intergenic 35.0%
GATTTCAATAGTCATGCCTT+AGG - chr8_2:22586538-22586557 None:intergenic 35.0%
TCCTAAAAGGATCTTCAGTA+GGG - chr8_2:22586581-22586600 None:intergenic 35.0%
TTCATATGGAAGCTCCTAAA+AGG - chr8_2:22586594-22586613 None:intergenic 35.0%
AGTTGAGAGAAAAGATGGTA+AGG - chr8_2:22586653-22586672 None:intergenic 35.0%
! AGACAAGTTGAGAGAAAAGA+TGG - chr8_2:22586658-22586677 None:intergenic 35.0%
AAGATGATATGGATCCATCA+TGG + chr8_2:22586742-22586761 Msa1240180:CDS 35.0%
AGATGATATGGATCCATCAT+GGG + chr8_2:22586743-22586762 Msa1240180:CDS 35.0%
GATACAAGTAACGCTAACAA+AGG - chr8_2:22586876-22586895 None:intergenic 35.0%
GTTAGCGTTACTTGTATCTT+TGG + chr8_2:22586878-22586897 Msa1240180:intron 35.0%
! GATTTGGTTGAATTAGTTGG+AGG + chr8_2:22587191-22587210 Msa1240180:intron 35.0%
AATCCGTATGTAAGAGCTAA+TGG + chr8_2:22587214-22587233 Msa1240180:intron 35.0%
CAGCAAGACAGTATCTTAAA+AGG - chr8_2:22587401-22587420 None:intergenic 35.0%
!!! TTTTGTAGATTGGTCTCAGA+TGG + chr8_2:22587620-22587639 Msa1240180:intron 35.0%
CATAACCAAGCAAAACTAGT+CGG - chr8_2:22587695-22587714 None:intergenic 35.0%
TCTAGTTAAACATGGGATGA+AGG - chr8_2:22587727-22587746 None:intergenic 35.0%
! TTTTGTGGGAGAAAAACAGA+TGG - chr8_2:22587846-22587865 None:intergenic 35.0%
! TTCCTTGTCATTTCCTATGA+TGG + chr8_2:22587949-22587968 Msa1240180:intron 35.0%
! AATATCTTGGTGACCATCAT+AGG - chr8_2:22587965-22587984 None:intergenic 35.0%
TCTGACAGTCTCAAATATCT+TGG - chr8_2:22587978-22587997 None:intergenic 35.0%
TGCAACAATGCAGTTAGAAT+AGG - chr8_2:22588150-22588169 None:intergenic 35.0%
! AAGCATTGCAATGAGAAAGA+TGG + chr8_2:22588272-22588291 Msa1240180:CDS 35.0%
!! ATTTGACTAGTCTGTTAGAG+AGG + chr8_2:22588345-22588364 Msa1240180:intron 35.0%
!! TTTGACTAGTCTGTTAGAGA+GGG + chr8_2:22588346-22588365 Msa1240180:intron 35.0%
AGAAGACCGTAGAAAACATT+AGG + chr8_2:22588404-22588423 Msa1240180:intron 35.0%
AAACATTAGGAAAAACCACC+AGG + chr8_2:22588417-22588436 Msa1240180:intron 35.0%
!!! GCTGTTGTTTGTCTTGTTTT+AGG + chr8_2:22588533-22588552 Msa1240180:intron 35.0%
ATTAACTTCAGCTCTTCTTG+AGG + chr8_2:22588753-22588772 Msa1240180:intron 35.0%
TTAACTTCAGCTCTTCTTGA+GGG + chr8_2:22588754-22588773 Msa1240180:intron 35.0%
! TTAAATTGGTAGCATGTGAG+AGG + chr8_2:22588895-22588914 Msa1240180:CDS 35.0%
TTCAGAAGAAAACAATGGCA+CGG - chr8_2:22588955-22588974 None:intergenic 35.0%
AATCCATATCCTCTAGTGAA+GGG + chr8_2:22588973-22588992 Msa1240180:intron 35.0%
ACATTCTACAATTCTCCTTC+TGG + chr8_2:22589111-22589130 Msa1240180:intron 35.0%
TTAAATGTTTGCTCCTCTTC+TGG + chr8_2:22589156-22589175 Msa1240180:intron 35.0%
AACTAACAAGAACTTTGCAC+GGG - chr8_2:22589249-22589268 None:intergenic 35.0%
CAACTAACAAGAACTTTGCA+CGG - chr8_2:22589250-22589269 None:intergenic 35.0%
CAAAGTTCTTGTTAGTTGCA+TGG + chr8_2:22589252-22589271 Msa1240180:intron 35.0%
AATCAGTATATGCTGACCTT+TGG + chr8_2:22589307-22589326 Msa1240180:intron 35.0%
TAATTTCTGTAGTCTGTCTC+TGG + chr8_2:22589378-22589397 Msa1240180:intron 35.0%
TCCTGAATGTCAAAGCATAT+TGG - chr8_2:22589708-22589727 None:intergenic 35.0%
! TGTCTCCTTTCAAGTCATTA+AGG + chr8_2:22589828-22589847 Msa1240180:intron 35.0%
AGAAAGAAGACAACAAAAGC+TGG + chr8_2:22589985-22590004 Msa1240180:CDS 35.0%
GTTTCACATCATAATAGGCA+AGG - chr8_2:22590559-22590578 None:intergenic 35.0%
! TCAGCTTTTAAGCATGATCA+TGG + chr8_2:22590643-22590662 Msa1240180:intron 35.0%
! GACAGAATTTTCAGAGTAGA+AGG - chr8_2:22590729-22590748 None:intergenic 35.0%
TAACATAGACGAGTTTCTTG+AGG + chr8_2:22590862-22590881 Msa1240180:CDS 35.0%
AACATAGACGAGTTTCTTGA+GGG + chr8_2:22590863-22590882 Msa1240180:CDS 35.0%
! TGTCTCAAGAAATGCTTTTC+AGG - chr8_2:22590926-22590945 None:intergenic 35.0%
GGTAAACATGGAAAAAGGTT+AGG + chr8_2:22590952-22590971 Msa1240180:three_prime_UTR 35.0%
TTTAGTGTCAACAAGTTCGA+AGG - chr8_2:22591079-22591098 None:intergenic 35.0%
TGCTTAATATACTAGGCAGA+AGG + chr8_2:22591101-22591120 Msa1240180:three_prime_UTR 35.0%
ATGTAGCAGATTCTTCTACT+TGG - chr8_2:22591202-22591221 None:intergenic 35.0%
TCAACTAGCACTTAAACGAG+TGG - chr8_2:22584330-22584349 None:intergenic 40.0%
!! CGATCAGATTTTGGGAACAA+AGG - chr8_2:22584505-22584524 None:intergenic 40.0%
! AGGAGCTACGATCAGATTTT+GGG - chr8_2:22584513-22584532 None:intergenic 40.0%
! AAGGAGCTACGATCAGATTT+TGG - chr8_2:22584514-22584533 None:intergenic 40.0%
GATGTCATGGTGAATGAAGA+AGG - chr8_2:22584533-22584552 None:intergenic 40.0%
TTCATTCACCATGACATCGT+TGG + chr8_2:22584535-22584554 Msa1240180:exon 40.0%
TCATTCACCATGACATCGTT+GGG + chr8_2:22584536-22584555 Msa1240180:exon 40.0%
GAGGAGGGAATGAAAAGAAA+CGG - chr8_2:22584611-22584630 None:intergenic 40.0%
TCCATTAAGGAAAAGGAAGG+AGG + chr8_2:22585457-22585476 Msa1240180:intron 40.0%
TGTGACTGGGATGCTTATAT+TGG + chr8_2:22585609-22585628 Msa1240180:intron 40.0%
!! TATATTGGTTTCCTACGGCT+TGG + chr8_2:22585624-22585643 Msa1240180:intron 40.0%
! AGATTTTATCACCAAGCCGT+AGG - chr8_2:22585638-22585657 None:intergenic 40.0%
! AATGACCTTCAGGATTTGGT+TGG + chr8_2:22585728-22585747 Msa1240180:intron 40.0%
! TTGGTTGGCCACATTGAAAA+AGG + chr8_2:22585743-22585762 Msa1240180:intron 40.0%
! GCAAGTTCCTTTTACCATCT+TGG + chr8_2:22585862-22585881 Msa1240180:intron 40.0%
AGCAGTACCAAGATGGTAAA+AGG - chr8_2:22585872-22585891 None:intergenic 40.0%
ATTCTCTAGCAGTACCAAGA+TGG - chr8_2:22585879-22585898 None:intergenic 40.0%
! GTGCCTACAGTTAGTTTCTA+TGG + chr8_2:22585998-22586017 Msa1240180:intron 40.0%
AGATAAAGACACGCTAAGAG+AGG + chr8_2:22586063-22586082 Msa1240180:CDS 40.0%
GATAAAGACACGCTAAGAGA+GGG + chr8_2:22586064-22586083 Msa1240180:CDS 40.0%
AAGCTACAAGAGATGACTAC+TGG - chr8_2:22586277-22586296 None:intergenic 40.0%
! AGTCATCTCTTGTAGCTTGT+TGG + chr8_2:22586279-22586298 Msa1240180:intron 40.0%
!! GTCATCTCTTGTAGCTTGTT+GGG + chr8_2:22586280-22586299 Msa1240180:intron 40.0%
!! TAGCTTGTTGGGTTATCCTT+TGG + chr8_2:22586291-22586310 Msa1240180:intron 40.0%
TAAAAGGATCTTCAGTAGGG+TGG - chr8_2:22586578-22586597 None:intergenic 40.0%
! ACCCTACTGAAGATCCTTTT+AGG + chr8_2:22586577-22586596 Msa1240180:intron 40.0%
CTCCTAAAAGGATCTTCAGT+AGG - chr8_2:22586582-22586601 None:intergenic 40.0%
GAAAAGATGGTAAGGAAGAG+CGG - chr8_2:22586645-22586664 None:intergenic 40.0%
TGCAAGATTTATACGGTCAG+AGG + chr8_2:22586719-22586738 Msa1240180:intron 40.0%
CAGGATTGGGACATTCTATT+TGG + chr8_2:22587034-22587053 Msa1240180:intron 40.0%
GGGGAAATTGACAAATCACA+AGG - chr8_2:22587521-22587540 None:intergenic 40.0%
!!! TTTCACCGACTAGTTTTGCT+TGG + chr8_2:22587687-22587706 Msa1240180:intron 40.0%
AACTATGGGATTCATACGGA+TGG - chr8_2:22587917-22587936 None:intergenic 40.0%
GACCATCATAGGAAATGACA+AGG - chr8_2:22587954-22587973 None:intergenic 40.0%
CAATGCAGTTAGAATAGGAC+AGG - chr8_2:22588145-22588164 None:intergenic 40.0%
GTTAACCCAATCAAAAGGGA+AGG + chr8_2:22588381-22588400 Msa1240180:intron 40.0%
!! CTTCTCCTTCCCTTTTGATT+GGG - chr8_2:22588389-22588408 None:intergenic 40.0%
! TCTTCTCCTTCCCTTTTGAT+TGG - chr8_2:22588390-22588409 None:intergenic 40.0%
TATAGTAAGGTTCTTCCTGG+TGG - chr8_2:22588435-22588454 None:intergenic 40.0%
AACAGCAACACCCACTAAAT+GGG - chr8_2:22588519-22588538 None:intergenic 40.0%
TCAGAAGAAAACAATGGCAC+GGG - chr8_2:22588954-22588973 None:intergenic 40.0%
GAATCCATATCCTCTAGTGA+AGG + chr8_2:22588972-22588991 Msa1240180:intron 40.0%
GATATTAGTCCCTTCACTAG+AGG - chr8_2:22588985-22589004 None:intergenic 40.0%
GCCAATATGCTTTGACATTC+AGG + chr8_2:22589704-22589723 Msa1240180:intron 40.0%
CAGGGAAACTTAACTACAAG+AGG + chr8_2:22589942-22589961 Msa1240180:CDS 40.0%
AAAAGCTGGACAGAAGAAAG+AGG + chr8_2:22589999-22590018 Msa1240180:CDS 40.0%
AGGAAAATAAGAAGGGGGTT+GGG - chr8_2:22590048-22590067 None:intergenic 40.0%
GAACGACTCCTACAATTGAA+AGG - chr8_2:22590100-22590119 None:intergenic 40.0%
! TTCGAAGAGTGATGATGATC+TGG + chr8_2:22590117-22590136 Msa1240180:CDS 40.0%
TCCTTCTCTCTTCACTTTCT+TGG - chr8_2:22590150-22590169 None:intergenic 40.0%
AGTGAAGAGAGAAGGAGAAA+AGG + chr8_2:22590154-22590173 Msa1240180:CDS 40.0%
! GTTTTTGTTGCAGGATAGAC+CGG + chr8_2:22590243-22590262 Msa1240180:intron 40.0%
! TAATGGTTTGCCAAATCGCT+AGG + chr8_2:22590519-22590538 Msa1240180:intron 40.0%
ACTTTCCTAACCTAGCGATT+TGG - chr8_2:22590532-22590551 None:intergenic 40.0%
GCTTAAATCTGACCCATTGT+TGG - chr8_2:22590618-22590637 None:intergenic 40.0%
CAATGGGTCAGATTTAAGCA+AGG + chr8_2:22590619-22590638 Msa1240180:intron 40.0%
!! ATTTTCAGGAAAGAGGGCTT+TGG + chr8_2:22590790-22590809 Msa1240180:intron 40.0%
ACATAGACGAGTTTCTTGAG+GGG + chr8_2:22590864-22590883 Msa1240180:CDS 40.0%
GAGCTGGTAAACATGGAAAA+AGG + chr8_2:22590947-22590966 Msa1240180:three_prime_UTR 40.0%
GAAGAATCTGCTACATGTTC+TGG + chr8_2:22591206-22591225 Msa1240180:three_prime_UTR 40.0%
CTCTTCTCTGTCGAATATCG+CGG - chr8_2:22584573-22584592 None:intergenic 45.0%
CAGTATCAGGCTCATATTCG+AGG + chr8_2:22584684-22584703 Msa1240180:CDS 45.0%
CCTATTGTCCATTCCCAAAC+AGG - chr8_2:22585365-22585384 None:intergenic 45.0%
CCTGTTTGGGAATGGACAAT+AGG + chr8_2:22585362-22585381 Msa1240180:intron 45.0%
! GCCTCCTTCCTTTTCCTTAA+TGG - chr8_2:22585461-22585480 None:intergenic 45.0%
CAGGGGGTTGTTTGAATTTC+CGG - chr8_2:22585493-22585512 None:intergenic 45.0%
ACATGCACGGTTTATAGCAG+GGG - chr8_2:22585510-22585529 None:intergenic 45.0%
GACATGCACGGTTTATAGCA+GGG - chr8_2:22585511-22585530 None:intergenic 45.0%
TGACATGCACGGTTTATAGC+AGG - chr8_2:22585512-22585531 None:intergenic 45.0%
GTGATCTGTCAGAAGTCTGA+TGG + chr8_2:22585677-22585696 Msa1240180:intron 45.0%
CACAGTAAGCTGAAATGCCA+TGG - chr8_2:22585919-22585938 None:intergenic 45.0%
ACACGCTAAGAGAGGGATAT+AGG + chr8_2:22586071-22586090 Msa1240180:CDS 45.0%
ACGGTCAGAGGAAGATGATA+TGG + chr8_2:22586731-22586750 Msa1240180:CDS 45.0%
GACATGTCACAGTACAAGAG+TGG + chr8_2:22587420-22587439 Msa1240180:CDS 45.0%
GTCACAGTACAAGAGTGGTA+AGG + chr8_2:22587425-22587444 Msa1240180:CDS 45.0%
TCTCAGATGGAGAACAGAGA+AGG + chr8_2:22587633-22587652 Msa1240180:CDS 45.0%
ACAGAGAAGGAAGTCATGTC+TGG + chr8_2:22587646-22587665 Msa1240180:CDS 45.0%
AAGGAAGTCATGTCTGGCAA+AGG + chr8_2:22587652-22587671 Msa1240180:CDS 45.0%
! GTCATGTCTGGCAAAGGTAT+TGG + chr8_2:22587658-22587677 Msa1240180:intron 45.0%
!! AGATGGATTAGCAAGCTACG+AGG + chr8_2:22588289-22588308 Msa1240180:CDS 45.0%
GATTAGCAAGCTACGAGGTA+AGG + chr8_2:22588294-22588313 Msa1240180:intron 45.0%
ACTAAATGGGGACAGCTACA+TGG - chr8_2:22588506-22588525 None:intergenic 45.0%
ATGTAGCTGTCCCCATTTAG+TGG + chr8_2:22588505-22588524 Msa1240180:intron 45.0%
TGTAGCTGTCCCCATTTAGT+GGG + chr8_2:22588506-22588525 Msa1240180:intron 45.0%
ACAGCAACACCCACTAAATG+GGG - chr8_2:22588518-22588537 None:intergenic 45.0%
CAACAGCAACACCCACTAAA+TGG - chr8_2:22588520-22588539 None:intergenic 45.0%
AGTCCCTTCACTAGAGGATA+TGG - chr8_2:22588979-22588998 None:intergenic 45.0%
CTACAAGAGGCAGAAAGAGA+AGG + chr8_2:22589955-22589974 Msa1240180:CDS 45.0%
GAGGTGAGAAACGAGAACAT+TGG + chr8_2:22590018-22590037 Msa1240180:intron 45.0%
GAAAATAAGAAGGGGGTTGG+GGG - chr8_2:22590046-22590065 None:intergenic 45.0%
GGAAAATAAGAAGGGGGTTG+GGG - chr8_2:22590047-22590066 None:intergenic 45.0%
GAGGAAAATAAGAAGGGGGT+TGG - chr8_2:22590049-22590068 None:intergenic 45.0%
! AGTGATGATGATCTGGACGA+GGG + chr8_2:22590124-22590143 Msa1240180:CDS 45.0%
GCCAAGAAAGTGAAGAGAGA+AGG + chr8_2:22590146-22590165 Msa1240180:CDS 45.0%
GTTTGCCAAATCGCTAGGTT+AGG + chr8_2:22590524-22590543 Msa1240180:intron 45.0%
GCATTTCTTGAGACAAGAGC+TGG + chr8_2:22590931-22590950 Msa1240180:three_prime_UTR 45.0%
GAGACAAGAGCTGGTAAACA+TGG + chr8_2:22590940-22590959 Msa1240180:three_prime_UTR 45.0%
GAAAAAGGTTAGGCAGTGCT+GGG + chr8_2:22590962-22590981 Msa1240180:three_prime_UTR 45.0%
!!! TTTTATTTTTTTTCTTTTTT+TGG - chr8_2:22586509-22586528 None:intergenic 5.0%
!! ATATAATAATTTATCTAAAA+TGG + chr8_2:22587285-22587304 Msa1240180:intron 5.0%
!!! TTTTTTTTTTAAATAATTGA+AGG + chr8_2:22589861-22589880 Msa1240180:intron 5.0%
CGAAGAGAGGATTGCGAAAC+TGG + chr8_2:22584434-22584453 Msa1240180:five_prime_UTR 50.0%
CAGAGATCCCAACGATGTCA+TGG - chr8_2:22584546-22584565 None:intergenic 50.0%
CATGCACGGTTTATAGCAGG+GGG - chr8_2:22585509-22585528 None:intergenic 50.0%
TGTGGCCAACCAAATCCTGA+AGG - chr8_2:22585736-22585755 None:intergenic 50.0%
TGGATCCATCATGGGAGCAA+AGG + chr8_2:22586751-22586770 Msa1240180:CDS 50.0%
TCAGCTCTTCTTGAGGGCTA+AGG + chr8_2:22588760-22588779 Msa1240180:intron 50.0%
ATGGCACGGGCAACAAAACT+TGG - chr8_2:22588941-22588960 None:intergenic 50.0%
!! GGCAGGAAGCATTATCCAGA+AGG - chr8_2:22589129-22589148 None:intergenic 50.0%
! GAGTGATGATGATCTGGACG+AGG + chr8_2:22590123-22590142 Msa1240180:CDS 50.0%
GGAAAAAGGTTAGGCAGTGC+TGG + chr8_2:22590961-22590980 Msa1240180:three_prime_UTR 50.0%
TGGGAGCAAGTGGATAATGC+AGG + chr8_2:22590981-22591000 Msa1240180:three_prime_UTR 50.0%
GGAAGGAGGCTACAGTCATC+CGG + chr8_2:22585471-22585490 Msa1240180:intron 55.0%
TCCATCATGGGAGCAAAGGC+TGG + chr8_2:22586755-22586774 Msa1240180:CDS 55.0%
ACCAGCCTTTGCTCCCATGA+TGG - chr8_2:22586759-22586778 None:intergenic 55.0%
! TAGGCAGTGCTGGGAGCAAG+TGG + chr8_2:22590971-22590990 Msa1240180:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 22584323 22591326 22584323 ID=Msa1240180;Name=Msa1240180
chr8_2 mRNA 22584323 22591326 22584323 ID=Msa1240180-mRNA-1;Parent=Msa1240180;Name=Msa1240180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=222|1|1|1|0.9|1|11|428|251
chr8_2 exon 22584323 22584600 22584323 ID=Msa1240180-mRNA-1:exon:8003;Parent=Msa1240180-mRNA-1
chr8_2 exon 22584683 22584750 22584683 ID=Msa1240180-mRNA-1:exon:8004;Parent=Msa1240180-mRNA-1
chr8_2 exon 22586008 22586092 22586008 ID=Msa1240180-mRNA-1:exon:8005;Parent=Msa1240180-mRNA-1
chr8_2 exon 22586725 22586808 22586725 ID=Msa1240180-mRNA-1:exon:8006;Parent=Msa1240180-mRNA-1
chr8_2 exon 22587407 22587446 22587407 ID=Msa1240180-mRNA-1:exon:8007;Parent=Msa1240180-mRNA-1
chr8_2 exon 22587628 22587673 22587628 ID=Msa1240180-mRNA-1:exon:8008;Parent=Msa1240180-mRNA-1
chr8_2 exon 22588252 22588310 22588252 ID=Msa1240180-mRNA-1:exon:8009;Parent=Msa1240180-mRNA-1
chr8_2 exon 22588849 22588916 22588849 ID=Msa1240180-mRNA-1:exon:8010;Parent=Msa1240180-mRNA-1
chr8_2 exon 22589937 22590020 22589937 ID=Msa1240180-mRNA-1:exon:8011;Parent=Msa1240180-mRNA-1
chr8_2 exon 22590111 22590175 22590111 ID=Msa1240180-mRNA-1:exon:8012;Parent=Msa1240180-mRNA-1
chr8_2 exon 22590798 22591326 22590798 ID=Msa1240180-mRNA-1:exon:8013;Parent=Msa1240180-mRNA-1
chr8_2 five_prime_UTR 22584323 22584544 22584323 ID=Msa1240180-mRNA-1:five_prime_utr;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22584545 22584600 22584545 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22584683 22584750 22584683 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22586008 22586092 22586008 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22586725 22586808 22586725 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22587407 22587446 22587407 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22587628 22587673 22587628 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22588252 22588310 22588252 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22588849 22588916 22588849 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22589937 22590020 22589937 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22590111 22590175 22590111 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 CDS 22590798 22590898 22590798 ID=Msa1240180-mRNA-1:cds;Parent=Msa1240180-mRNA-1
chr8_2 three_prime_UTR 22590899 22591326 22590899 ID=Msa1240180-mRNA-1:three_prime_utr;Parent=Msa1240180-mRNA-1
Gene Sequence

>Msa1240180

ATGACATCGTTGGGATCTCTGAAATCCGCGATATTCGACAGAGAAGAGAGAAAACAACAGTATCAGGCTCATATTCGAGGTCTTAATGCATACGATCGCCACAAAAAGTTTATCAACGATTACGTTAGTTTCTATGGGAAAGAAGAAAAACCTTCAACCTTAAAGTTGCCTATTAAAACAGATAAAGACACGCTAAGAGAGGGATATAGATTTATACGGTCAGAGGAAGATGATATGGATCCATCATGGGAGCAAAGGCTGGTGAAGCGTTATTATGCTAAGCTTTTTAAGGAATACTGTCTTGCTGACATGTCACAGTACAAGAGTGGTAAGATTGGTCTCAGATGGAGAACAGAGAAGGAAGTCATGTCTGGCAAAGGTCAGTTTATATGCGGCAACAAGCATTGCAATGAGAAAGATGGATTAGCAAGCTACGAGGTGAACTTTTGTTATTTTGAAGCAGGAGAGAACAAACAAGCTCTAGTTAAATTGGTAGCATGTGAGAGATGTGCAGGGAAACTTAACTACAAGAGGCAGAAAGAGAAGGAGCAATTAGAAAGAAGACAACAAAAGCTGGACAGAAGAAAGAGGAGTCGTTCGAAGAGTGATGATGATCTGGACGAGGGCCAAGAAAGTGAAGAGAGAAGGAGAAAAGGAAAGAGGGCTTTGGTTTCAGCCAGTGATCATAAAATTGATGATGATAATGATTCTGATGATGATAACATAGACGAGTTTCTTGAGGGGATGTTTCCCTGA

Protein sequence

>Msa1240180

MTSLGSLKSAIFDREERKQQYQAHIRGLNAYDRHKKFINDYVSFYGKEEKPSTLKLPIKTDKDTLREGYRFIRSEEDDMDPSWEQRLVKRYYAKLFKEYCLADMSQYKSGKIGLRWRTEKEVMSGKGQFICGNKHCNEKDGLASYEVNFCYFEAGENKQALVKLVACERCAGKLNYKRQKEKEQLERRQQKLDRRKRSRSKSDDDLDEGQESEERRRKGKRALVSASDHKIDDDNDSDDDNIDEFLEGMFP*