Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213360 | sp|Q2V0Z5|MIS12_ARATH | 41.393 | 244 | 125 | 6 | 1 | 239 | 1 | 231 | 6.76e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213360 | G7JT53 | 92.683 | 246 | 18 | 0 | 1 | 246 | 4 | 249 | 3.07e-169 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1213360 | 0.805748 | 1.148967e-49 | -8.615850e-47 |
| Msa0017510 | Msa1213360 | 0.818472 | 1.925950e-52 | -8.615850e-47 |
| Msa0028420 | Msa1213360 | 0.802863 | 4.583425e-49 | -8.615850e-47 |
| Msa0089630 | Msa1213360 | 0.811379 | 7.209522e-51 | -8.615850e-47 |
| Msa0677410 | Msa1213360 | 0.804629 | 1.970564e-49 | -8.615850e-47 |
| Msa0157290 | Msa1213360 | 0.818961 | 1.491298e-52 | -8.615850e-47 |
| Msa0200260 | Msa1213360 | 0.804230 | 2.386746e-49 | -8.615850e-47 |
| Msa0392420 | Msa1213360 | 0.810337 | 1.212079e-50 | -8.615850e-47 |
| Msa0392460 | Msa1213360 | 0.806849 | 6.735710e-50 | -8.615850e-47 |
| Msa0392490 | Msa1213360 | 0.811676 | 6.214478e-51 | -8.615850e-47 |
| Msa0422850 | Msa1213360 | 0.804237 | 2.378682e-49 | -8.615850e-47 |
| Msa0422930 | Msa1213360 | 0.808051 | 3.744748e-50 | -8.615850e-47 |
| Msa0428590 | Msa1213360 | 0.808424 | 3.119090e-50 | -8.615850e-47 |
| Msa0475790 | Msa1213360 | 0.810470 | 1.134320e-50 | -8.615850e-47 |
| Msa1004600 | Msa1213360 | 0.801087 | 1.062414e-48 | -8.615850e-47 |
| Msa1005870 | Msa1213360 | 0.800944 | 1.136166e-48 | -8.615850e-47 |
| Msa1047980 | Msa1213360 | 0.810133 | 1.341334e-50 | -8.615850e-47 |
| Msa1103990 | Msa1213360 | 0.809662 | 1.693658e-50 | -8.615850e-47 |
| Msa0239570 | Msa1213360 | 0.801546 | 8.555007e-49 | -8.615850e-47 |
| Msa0261340 | Msa1213360 | 0.804993 | 1.654631e-49 | -8.615850e-47 |
| Msa0277180 | Msa1213360 | 0.820739 | 5.849710e-53 | -8.615850e-47 |
| Msa0316810 | Msa1213360 | 0.818188 | 2.232972e-52 | -8.615850e-47 |
| Msa0317280 | Msa1213360 | 0.811404 | 7.119750e-51 | -8.615850e-47 |
| Msa0344570 | Msa1213360 | 0.802556 | 5.304630e-49 | -8.615850e-47 |
| Msa1124110 | Msa1213360 | 0.803556 | 3.294473e-49 | -8.615850e-47 |
| Msa1151910 | Msa1213360 | 0.805405 | 1.356005e-49 | -8.615850e-47 |
| Msa1157870 | Msa1213360 | 0.802516 | 5.405984e-49 | -8.615850e-47 |
| Msa1213360 | Msa1213420 | 0.984049 | 1.917006e-159 | -8.615850e-47 |
| Msa1213360 | Msa1328710 | 0.801015 | 1.099012e-48 | -8.615850e-47 |
| Msa1213360 | Msa1374550 | 0.839233 | 1.791465e-57 | -8.615850e-47 |
| Msa0487570 | Msa1213360 | 0.812523 | 4.062469e-51 | -8.615850e-47 |
| Msa0487630 | Msa1213360 | 0.823048 | 1.707985e-53 | -8.615850e-47 |
| Msa0574890 | Msa1213360 | 0.823675 | 1.218974e-53 | -8.615850e-47 |
| Msa0843220 | Msa1213360 | 0.807623 | 4.617783e-50 | -8.615850e-47 |
| Msa0880140 | Msa1213360 | 0.814606 | 1.414219e-51 | -8.615850e-47 |
| Msa0896540 | Msa1213360 | 0.805356 | 1.389059e-49 | -8.615850e-47 |
| Msa0967380 | Msa1213360 | 0.806780 | 6.967489e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213360 | MtrunA17_Chr4g0061861 | 92.683 | 246 | 18 | 0 | 1 | 246 | 4 | 249 | 5.91e-173 | 476 |
| Msa1213360 | MtrunA17_Chr4g0062071 | 89.024 | 246 | 24 | 1 | 1 | 246 | 1 | 243 | 2.69e-151 | 421 |
| Msa1213360 | MtrunA17_Chr4g0062041 | 81.081 | 37 | 7 | 0 | 200 | 236 | 1 | 37 | 9.70e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213360 | AT5G35520.1 | 41.393 | 244 | 125 | 6 | 1 | 239 | 1 | 231 | 6.87e-55 | 176 |
Find 63 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCATTGAGTTGTTTC+AGG | 0.169031 | 8_1:+73510959 | Msa1213360:CDS |
| TGAAATTGGGGAATCAAATT+TGG | 0.229151 | 8_1:+73509687 | Msa1213360:five_prime_UTR |
| TCTCGTAGTCTTTCTCAATT+TGG | 0.246763 | 8_1:+73512062 | Msa1213360:intron |
| ATTAATGAATTTAAATTATT+CGG | 0.253474 | 8_1:+73512025 | Msa1213360:three_prime_UTR |
| TCAAAAGGTTCAATCTGTTT+TGG | 0.255176 | 8_1:+73510133 | Msa1213360:CDS |
| CTGTACCTGTAATTGTTTAT+TGG | 0.268964 | 8_1:+73511965 | Msa1213360:three_prime_UTR |
| AAGGATTGACAACAATAAAA+TGG | 0.285180 | 8_1:+73511709 | Msa1213360:CDS |
| GGATCAAAAGCTCGCTGTTT+GGG | 0.327066 | 8_1:+73510154 | Msa1213360:CDS |
| TGAAGTGCCTGACAAGTTAC+AGG | 0.365071 | 8_1:+73512132 | Msa1213360:three_prime_UTR |
| GAACATACATTGAGAGTGTT+TGG | 0.366024 | 8_1:-73510227 | None:intergenic |
| GACTACCAATAAACAATTAC+AGG | 0.370178 | 8_1:-73511970 | None:intergenic |
| AATTGTTAGCCGAGTTTACT+AGG | 0.381196 | 8_1:+73512191 | Msa1213360:three_prime_UTR |
| TTTATTGGTAGTCTATTAGT+TGG | 0.385190 | 8_1:+73511980 | Msa1213360:three_prime_UTR |
| AGTGATAAGACCAGTCCAAC+TGG | 0.389779 | 8_1:-73511934 | None:intergenic |
| GTTTGGCAATTGAAAACCTT+CGG | 0.391014 | 8_1:-73510210 | None:intergenic |
| TGGATCAAAAGCTCGCTGTT+TGG | 0.391728 | 8_1:+73510153 | Msa1213360:CDS |
| CAGGAAAAGTGAAAGCAAAA+AGG | 0.393871 | 8_1:+73511690 | Msa1213360:CDS |
| GGAATCAAATTTGGCGGGAA+TGG | 0.406021 | 8_1:+73509696 | Msa1213360:exon |
| TCCTGGTTCTACTTCCGATC+TGG | 0.415979 | 8_1:+73510674 | Msa1213360:CDS |
| AAGAAAGAGGCACATGCATT+AGG | 0.422021 | 8_1:+73509658 | Msa1213360:five_prime_UTR |
| TTTGGCAATTGAAAACCTTC+GGG | 0.426623 | 8_1:-73510209 | None:intergenic |
| TGTTGATTGCATTCGTCAAA+AGG | 0.440105 | 8_1:+73510118 | Msa1213360:CDS |
| CTCAGAACTTCGAATGAAGA+TGG | 0.446442 | 8_1:+73511637 | Msa1213360:CDS |
| TCCTGTCTCTTCAATCAAGT+TGG | 0.449465 | 8_1:-73511672 | None:intergenic |
| AGTAGCTTCCGCATTGAGCT+TGG | 0.467482 | 8_1:-73509954 | None:intergenic |
| CACAAAAGGTGAATATGTAA+AGG | 0.468134 | 8_1:+73512287 | Msa1213360:three_prime_UTR |
| GTAATGCCTCATTGATGTAC+TGG | 0.468420 | 8_1:-73510920 | None:intergenic |
| TCTTGCATTGAGTTGTTTCA+GGG | 0.469644 | 8_1:+73510960 | Msa1213360:CDS |
| GCTAGAAGTTTGTAAGTGAT+AGG | 0.472429 | 8_1:+73512101 | Msa1213360:three_prime_UTR |
| ACAAAAGGTGAATATGTAAA+GGG | 0.486942 | 8_1:+73512288 | Msa1213360:three_prime_UTR |
| TCAAATTTGGCGGGAATGGA+AGG | 0.492575 | 8_1:+73509700 | Msa1213360:exon |
| TTTCATCAACCCAGTTGGAC+TGG | 0.493434 | 8_1:+73511924 | Msa1213360:three_prime_UTR |
| ATGAAACCTGTGTGAGATGT+TGG | 0.501041 | 8_1:-73509985 | None:intergenic |
| TAGCCGAGTTTACTAGGTTG+TGG | 0.504832 | 8_1:+73512197 | Msa1213360:three_prime_UTR |
| GTATCTCCCTGTAACTTGTC+AGG | 0.509059 | 8_1:-73512139 | None:intergenic |
| ACTTGTCAGGCACTTCACTT+TGG | 0.510637 | 8_1:-73512126 | None:intergenic |
| AGCTTCCGCATTGAGCTTGG+TGG | 0.510752 | 8_1:-73509951 | None:intergenic |
| AATTGGGGAATCAAATTTGG+CGG | 0.519703 | 8_1:+73509690 | Msa1213360:five_prime_UTR |
| TGAAACCTGTGTGAGATGTT+GGG | 0.524390 | 8_1:-73509984 | None:intergenic |
| ATATGTAAAGGGAAAGTTGA+AGG | 0.528998 | 8_1:+73512299 | Msa1213360:three_prime_UTR |
| ATTGGGGAATCAAATTTGGC+GGG | 0.534605 | 8_1:+73509691 | Msa1213360:five_prime_UTR |
| ACTTCGTTGAAGAAGAGTTG+TGG | 0.543092 | 8_1:-73509775 | None:intergenic |
| CATCTTCATTCGAAGTTCTG+AGG | 0.545490 | 8_1:-73511636 | None:intergenic |
| TTCTCAATTTGGTTGTGCAA+AGG | 0.550792 | 8_1:+73512073 | Msa1213360:three_prime_UTR |
| CATTAATTTCAGTACAAGAG+AGG | 0.552215 | 8_1:-73512009 | None:intergenic |
| AATGAGAATGATGTTGATCC+TGG | 0.559856 | 8_1:+73510657 | Msa1213360:CDS |
| TCCAGATCGGAAGTAGAACC+AGG | 0.560356 | 8_1:-73510675 | None:intergenic |
| ACCAACTTGATTGAAGAGAC+AGG | 0.562272 | 8_1:+73511671 | Msa1213360:CDS |
| TATGTAAAGGGAAAGTTGAA+GGG | 0.566373 | 8_1:+73512300 | Msa1213360:three_prime_UTR |
| AACAGAGGAAGTGAAGAAAG+AGG | 0.576758 | 8_1:+73509645 | None:intergenic |
| TCAGAACTTCGAATGAAGAT+GGG | 0.584789 | 8_1:+73511638 | Msa1213360:CDS |
| AAGAAATTCATGCATTAGAG+AGG | 0.592371 | 8_1:+73510880 | Msa1213360:CDS |
| CTGCGCATCTAATTCCAGAT+CGG | 0.602596 | 8_1:-73510688 | None:intergenic |
| TCTGCTATATATGCTTCCAA+AGG | 0.618473 | 8_1:+73511737 | Msa1213360:CDS |
| TTACCACAACCTAGTAAACT+CGG | 0.619292 | 8_1:-73512200 | None:intergenic |
| GTGATAAGACCAGTCCAACT+GGG | 0.626319 | 8_1:-73511933 | None:intergenic |
| TAATGCCTCATTGATGTACT+GGG | 0.649912 | 8_1:-73510919 | None:intergenic |
| AGTAGAAATCGAAAGTATCG+AGG | 0.666017 | 8_1:-73509822 | None:intergenic |
| GAAGTGCCTGACAAGTTACA+GGG | 0.669427 | 8_1:+73512133 | Msa1213360:three_prime_UTR |
| CAATGCCCAGTACATCAATG+AGG | 0.688342 | 8_1:+73510914 | Msa1213360:CDS |
| AAGATCCCAACATCTCACAC+AGG | 0.719465 | 8_1:+73509979 | Msa1213360:CDS |
| AGCATCCACCAAGCTCAATG+CGG | 0.721723 | 8_1:+73509946 | Msa1213360:CDS |
| ATGCGCAGTTAGAATCACTG+AGG | 0.771532 | 8_1:+73510703 | Msa1213360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTAATTAACTTTAATT+AGG | + | chr8_1:73510044-73510063 | Msa1213360:intron | 10.0% |
| !! | CTTAAGAAAAAATTATACAA+AGG | - | chr8_1:73510609-73510628 | None:intergenic | 15.0% |
| !!! | TAAGATAAGATTTTTTTGAA+AGG | + | chr8_1:73511359-73511378 | Msa1213360:intron | 15.0% |
| !!! | AAGATAAGATTTTTTTGAAA+GGG | + | chr8_1:73511360-73511379 | Msa1213360:intron | 15.0% |
| !!! | AATAGTTTTATCACAATATA+GGG | - | chr8_1:73512228-73512247 | None:intergenic | 15.0% |
| !!! | AAATAGTTTTATCACAATAT+AGG | - | chr8_1:73512229-73512248 | None:intergenic | 15.0% |
| !!! | AATTTAAATCTTGTTGTTTC+AGG | + | chr8_1:73509921-73509940 | Msa1213360:intron | 20.0% |
| !!! | ATTTAAATCTTGTTGTTTCA+GGG | + | chr8_1:73509922-73509941 | Msa1213360:intron | 20.0% |
| !! | TAAGCAATTTCTTTGAATAA+TGG | - | chr8_1:73510021-73510040 | None:intergenic | 20.0% |
| !!! | CCTTTAATCTCTTTAAAAAA+AGG | - | chr8_1:73510380-73510399 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTAAAGAGATTAA+AGG | + | chr8_1:73510377-73510396 | Msa1213360:intron | 20.0% |
| !! | AATTGTATTGTTTGATATCT+TGG | - | chr8_1:73510455-73510474 | None:intergenic | 20.0% |
| !! | AAAAATTATACAAAGGAACA+AGG | - | chr8_1:73510602-73510621 | None:intergenic | 20.0% |
| !! | AATCAAATGAGAAACAAAAT+AGG | - | chr8_1:73510806-73510825 | None:intergenic | 20.0% |
| !! | ATTTCTATTTAATCAATCCT+GGG | + | chr8_1:73511080-73511099 | Msa1213360:intron | 20.0% |
| !! | CAAAAGAACATTGAATTATT+TGG | + | chr8_1:73511183-73511202 | Msa1213360:intron | 20.0% |
| !! | AACATTGAATTATTTGGATA+CGG | + | chr8_1:73511189-73511208 | Msa1213360:intron | 20.0% |
| !!! | AGATAAGATTTTTTTGAAAG+GGG | + | chr8_1:73511361-73511380 | Msa1213360:intron | 20.0% |
| !! | AAATAATGTCAAAAATTTCC+TGG | + | chr8_1:73511465-73511484 | Msa1213360:intron | 20.0% |
| !!! | CATTAGGTTGTTTTGAAATT+GGG | + | chr8_1:73509674-73509693 | Msa1213360:five_prime_UTR | 25.0% |
| !!! | ATTAGGTTGTTTTGAAATTG+GGG | + | chr8_1:73509675-73509694 | Msa1213360:five_prime_UTR | 25.0% |
| !! | CAATTTCTTTGAATAATGGA+AGG | - | chr8_1:73510017-73510036 | None:intergenic | 25.0% |
| ! | GAAGAGAAAAACAATGATAA+AGG | - | chr8_1:73510190-73510209 | None:intergenic | 25.0% |
| ! | TTAAAATGCATGATATGATG+TGG | + | chr8_1:73510497-73510516 | Msa1213360:intron | 25.0% |
| !! | GTTTCTCATTTGATTTATCT+TGG | + | chr8_1:73510811-73510830 | Msa1213360:intron | 25.0% |
| ! | GATTTCTATTTAATCAATCC+TGG | + | chr8_1:73511079-73511098 | Msa1213360:intron | 25.0% |
| ! | TATAGTTAATGCATACAAAC+AGG | - | chr8_1:73511122-73511141 | None:intergenic | 25.0% |
| !! | TATATTACTGACTGTGTAAT+TGG | - | chr8_1:73511229-73511248 | None:intergenic | 25.0% |
| !!! | GATAAGATTTTTTTGAAAGG+GGG | + | chr8_1:73511362-73511381 | Msa1213360:intron | 25.0% |
| !! | GTTTCATTTCTCTTTTACTA+AGG | - | chr8_1:73511445-73511464 | None:intergenic | 25.0% |
| ! | AAGGATTGACAACAATAAAA+TGG | + | chr8_1:73511709-73511728 | Msa1213360:CDS | 25.0% |
| !! | CAACATGAATTATTTTCACA+AGG | + | chr8_1:73511786-73511805 | Msa1213360:intron | 25.0% |
| ! | AAATGTTCAAATCAGAACTA+TGG | - | chr8_1:73511819-73511838 | None:intergenic | 25.0% |
| !! | TTTATTGGTAGTCTATTAGT+TGG | + | chr8_1:73511980-73511999 | Msa1213360:three_prime_UTR | 25.0% |
| !! | ATTTCTTTTTACTGCACAAA+AGG | + | chr8_1:73512273-73512292 | Msa1213360:three_prime_UTR | 25.0% |
| ! | ACAAAAGGTGAATATGTAAA+GGG | + | chr8_1:73512288-73512307 | Msa1213360:three_prime_UTR | 25.0% |
| !!! | GCATTAGGTTGTTTTGAAAT+TGG | + | chr8_1:73509673-73509692 | Msa1213360:five_prime_UTR | 30.0% |
| TGAAATTGGGGAATCAAATT+TGG | + | chr8_1:73509687-73509706 | Msa1213360:five_prime_UTR | 30.0% | |
| !! | TGATTCTTTGTTTCTGTGAA+AGG | + | chr8_1:73510094-73510113 | Msa1213360:intron | 30.0% |
| !! | GATTCTTTGTTTCTGTGAAA+GGG | + | chr8_1:73510095-73510114 | Msa1213360:intron | 30.0% |
| ! | TCAAAAGGTTCAATCTGTTT+TGG | + | chr8_1:73510133-73510152 | Msa1213360:CDS | 30.0% |
| TTCGCTATTCACAAATATTG+CGG | + | chr8_1:73510262-73510281 | Msa1213360:intron | 30.0% | |
| ACATAAAAAACCCAGATATG+CGG | + | chr8_1:73510335-73510354 | Msa1213360:intron | 30.0% | |
| AAGAGATTAAAGGAATTGCA+TGG | + | chr8_1:73510387-73510406 | Msa1213360:intron | 30.0% | |
| !!! | AGGTTTTAGATAAGAGATGA+AGG | - | chr8_1:73510582-73510601 | None:intergenic | 30.0% |
| ! | AAGAAAGTGTACTTTCTTTC+AGG | + | chr8_1:73510626-73510645 | Msa1213360:intron | 30.0% |
| ! | AGAAAGTGTACTTTCTTTCA+GGG | + | chr8_1:73510627-73510646 | Msa1213360:intron | 30.0% |
| AAGAAATTCATGCATTAGAG+AGG | + | chr8_1:73510880-73510899 | Msa1213360:CDS | 30.0% | |
| AACGTTAAAACATGAGCAAA+AGG | - | chr8_1:73511008-73511027 | None:intergenic | 30.0% | |
| TTTGCAAATAATGAACATCC+AGG | + | chr8_1:73511272-73511291 | Msa1213360:intron | 30.0% | |
| TCTTTACATGTAGACATGAA+AGG | - | chr8_1:73511338-73511357 | None:intergenic | 30.0% | |
| ! | AATGATATTCTGGTTACCTT+TGG | - | chr8_1:73511756-73511775 | None:intergenic | 30.0% |
| CAGAAGAATGAATGATATTC+TGG | - | chr8_1:73511766-73511785 | None:intergenic | 30.0% | |
| ATTTGAACATTTCTGTATGC+AGG | + | chr8_1:73511827-73511846 | Msa1213360:intron | 30.0% | |
| ! | ATATTTTTCATCAACCCAGT+TGG | + | chr8_1:73511919-73511938 | Msa1213360:three_prime_UTR | 30.0% |
| CTGTACCTGTAATTGTTTAT+TGG | + | chr8_1:73511965-73511984 | Msa1213360:three_prime_UTR | 30.0% | |
| GACTACCAATAAACAATTAC+AGG | - | chr8_1:73511973-73511992 | None:intergenic | 30.0% | |
| CATTAATTTCAGTACAAGAG+AGG | - | chr8_1:73512012-73512031 | None:intergenic | 30.0% | |
| CACAAAAGGTGAATATGTAA+AGG | + | chr8_1:73512287-73512306 | Msa1213360:three_prime_UTR | 30.0% | |
| ATATGTAAAGGGAAAGTTGA+AGG | + | chr8_1:73512299-73512318 | Msa1213360:three_prime_UTR | 30.0% | |
| TATGTAAAGGGAAAGTTGAA+GGG | + | chr8_1:73512300-73512319 | Msa1213360:three_prime_UTR | 30.0% | |
| AATTGGGGAATCAAATTTGG+CGG | + | chr8_1:73509690-73509709 | Msa1213360:five_prime_UTR | 35.0% | |
| !! | AGTAGAAATCGAAAGTATCG+AGG | - | chr8_1:73509825-73509844 | None:intergenic | 35.0% |
| AAGAAGAAGAAGAAGCGAAA+GGG | - | chr8_1:73509861-73509880 | None:intergenic | 35.0% | |
| AAAGAAGAAGAAGAAGCGAA+AGG | - | chr8_1:73509862-73509881 | None:intergenic | 35.0% | |
| ! | TGTTGATTGCATTCGTCAAA+AGG | + | chr8_1:73510118-73510137 | Msa1213360:CDS | 35.0% |
| TTTGGCAATTGAAAACCTTC+GGG | - | chr8_1:73510212-73510231 | None:intergenic | 35.0% | |
| GTTTGGCAATTGAAAACCTT+CGG | - | chr8_1:73510213-73510232 | None:intergenic | 35.0% | |
| !! | GAACATACATTGAGAGTGTT+TGG | - | chr8_1:73510230-73510249 | None:intergenic | 35.0% |
| ACAAATATTGCGGAGAATCA+TGG | + | chr8_1:73510272-73510291 | Msa1213360:intron | 35.0% | |
| CTGTAATGCAACTTTGATTG+AGG | - | chr8_1:73510307-73510326 | None:intergenic | 35.0% | |
| ATATCTTGGCAAGTAGTGAT+TGG | - | chr8_1:73510441-73510460 | None:intergenic | 35.0% | |
| AATGAGAATGATGTTGATCC+TGG | + | chr8_1:73510657-73510676 | Msa1213360:CDS | 35.0% | |
| AGTCTTCATTCTGTAGATAG+TGG | + | chr8_1:73510772-73510791 | Msa1213360:intron | 35.0% | |
| ! | TTGGTAATAAATGTGCTGTC+AGG | + | chr8_1:73510830-73510849 | Msa1213360:intron | 35.0% |
| TAATAAATGTGCTGTCAGGT+GGG | + | chr8_1:73510834-73510853 | Msa1213360:intron | 35.0% | |
| TAATGCCTCATTGATGTACT+GGG | - | chr8_1:73510922-73510941 | None:intergenic | 35.0% | |
| ! | TCTTGCATTGAGTTGTTTCA+GGG | + | chr8_1:73510960-73510979 | Msa1213360:CDS | 35.0% |
| CATACAAACAGGTACCAAAA+TGG | - | chr8_1:73511111-73511130 | None:intergenic | 35.0% | |
| AATCAAAAGACAGACTATCC+TGG | - | chr8_1:73511293-73511312 | None:intergenic | 35.0% | |
| AGTATTAACATCCTGACCTA+TGG | - | chr8_1:73511417-73511436 | None:intergenic | 35.0% | |
| TCAGAACTTCGAATGAAGAT+GGG | + | chr8_1:73511638-73511657 | Msa1213360:CDS | 35.0% | |
| CAGGAAAAGTGAAAGCAAAA+AGG | + | chr8_1:73511690-73511709 | Msa1213360:CDS | 35.0% | |
| TCTGCTATATATGCTTCCAA+AGG | + | chr8_1:73511737-73511756 | Msa1213360:CDS | 35.0% | |
| TCTCGTAGTCTTTCTCAATT+TGG | + | chr8_1:73512062-73512081 | Msa1213360:intron | 35.0% | |
| TTCTCAATTTGGTTGTGCAA+AGG | + | chr8_1:73512073-73512092 | Msa1213360:three_prime_UTR | 35.0% | |
| GCTAGAAGTTTGTAAGTGAT+AGG | + | chr8_1:73512101-73512120 | Msa1213360:three_prime_UTR | 35.0% | |
| AATTGTTAGCCGAGTTTACT+AGG | + | chr8_1:73512191-73512210 | Msa1213360:three_prime_UTR | 35.0% | |
| TTACCACAACCTAGTAAACT+CGG | - | chr8_1:73512203-73512222 | None:intergenic | 35.0% | |
| ! | AAGAAAGAGGCACATGCATT+AGG | + | chr8_1:73509658-73509677 | Msa1213360:five_prime_UTR | 40.0% |
| ATTGGGGAATCAAATTTGGC+GGG | + | chr8_1:73509691-73509710 | Msa1213360:five_prime_UTR | 40.0% | |
| ACTTCGTTGAAGAAGAGTTG+TGG | - | chr8_1:73509778-73509797 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGCGAAAG+GGG | - | chr8_1:73509860-73509879 | None:intergenic | 40.0% | |
| TGAAACCTGTGTGAGATGTT+GGG | - | chr8_1:73509987-73510006 | None:intergenic | 40.0% | |
| ATGAAACCTGTGTGAGATGT+TGG | - | chr8_1:73509988-73510007 | None:intergenic | 40.0% | |
| !! | CATTGTTTTTCTCTTCCCGA+AGG | + | chr8_1:73510194-73510213 | Msa1213360:CDS | 40.0% |
| ACTGAGGAAAAAACTAGCTG+AGG | + | chr8_1:73510719-73510738 | Msa1213360:CDS | 40.0% | |
| GTAATAAATGTGCTGTCAGG+TGG | + | chr8_1:73510833-73510852 | Msa1213360:intron | 40.0% | |
| AATAAATGTGCTGTCAGGTG+GGG | + | chr8_1:73510835-73510854 | Msa1213360:intron | 40.0% | |
| GTAATGCCTCATTGATGTAC+TGG | - | chr8_1:73510923-73510942 | None:intergenic | 40.0% | |
| ! | CTCTTGCATTGAGTTGTTTC+AGG | + | chr8_1:73510959-73510978 | Msa1213360:CDS | 40.0% |
| !! | ATACTAGTTCTGAGTAGCAC+AGG | - | chr8_1:73511044-73511063 | None:intergenic | 40.0% |
| ! | AATCCTGGGATTCTCCATTT+TGG | + | chr8_1:73511094-73511113 | Msa1213360:intron | 40.0% |
| CTGACCTATGGTACCTTTAT+TGG | - | chr8_1:73511405-73511424 | None:intergenic | 40.0% | |
| !! | CAATAAAGGTACCATAGGTC+AGG | + | chr8_1:73511403-73511422 | Msa1213360:intron | 40.0% |
| CATCTTCATTCGAAGTTCTG+AGG | - | chr8_1:73511639-73511658 | None:intergenic | 40.0% | |
| CTCAGAACTTCGAATGAAGA+TGG | + | chr8_1:73511637-73511656 | Msa1213360:CDS | 40.0% | |
| ACCAACTTGATTGAAGAGAC+AGG | + | chr8_1:73511671-73511690 | Msa1213360:CDS | 40.0% | |
| TCCTGTCTCTTCAATCAAGT+TGG | - | chr8_1:73511675-73511694 | None:intergenic | 40.0% | |
| GAAAGACTACGAGATTCTTC+AGG | - | chr8_1:73512056-73512075 | None:intergenic | 40.0% | |
| GGAATCAAATTTGGCGGGAA+TGG | + | chr8_1:73509696-73509715 | Msa1213360:exon | 45.0% | |
| TCAAATTTGGCGGGAATGGA+AGG | + | chr8_1:73509700-73509719 | Msa1213360:exon | 45.0% | |
| !! | AAGCGAAAGGGGTTAGTTAC+TGG | - | chr8_1:73509849-73509868 | None:intergenic | 45.0% |
| AAGATCCCAACATCTCACAC+AGG | + | chr8_1:73509979-73509998 | Msa1213360:CDS | 45.0% | |
| TGGATCAAAAGCTCGCTGTT+TGG | + | chr8_1:73510153-73510172 | Msa1213360:CDS | 45.0% | |
| GGATCAAAAGCTCGCTGTTT+GGG | + | chr8_1:73510154-73510173 | Msa1213360:CDS | 45.0% | |
| AAGGTATGTGACCGCAATCT+AGG | - | chr8_1:73510361-73510380 | None:intergenic | 45.0% | |
| CTGCGCATCTAATTCCAGAT+CGG | - | chr8_1:73510691-73510710 | None:intergenic | 45.0% | |
| ATGCGCAGTTAGAATCACTG+AGG | + | chr8_1:73510703-73510722 | Msa1213360:CDS | 45.0% | |
| CAATGCCCAGTACATCAATG+AGG | + | chr8_1:73510914-73510933 | Msa1213360:CDS | 45.0% | |
| GTACCAAAATGGAGAATCCC+AGG | - | chr8_1:73511100-73511119 | None:intergenic | 45.0% | |
| ! | TTGAAAGGGGGCCAACATTT+TGG | + | chr8_1:73511374-73511393 | Msa1213360:intron | 45.0% |
| ! | TGAAAGGGGGCCAACATTTT+GGG | + | chr8_1:73511375-73511394 | Msa1213360:intron | 45.0% |
| ! | TATTGGTGCCCCCAAAATGT+TGG | - | chr8_1:73511388-73511407 | None:intergenic | 45.0% |
| !!! | CATTTTGGGGGCACCAATAA+AGG | + | chr8_1:73511389-73511408 | Msa1213360:intron | 45.0% |
| !! | GGCACCAATAAAGGTACCAT+AGG | + | chr8_1:73511398-73511417 | Msa1213360:intron | 45.0% |
| AGCTCTGCACTATTGCAAGT+AGG | + | chr8_1:73511488-73511507 | Msa1213360:intron | 45.0% | |
| GCAGTTGTCATGATCTCTAC+AGG | - | chr8_1:73511617-73511636 | None:intergenic | 45.0% | |
| TTTCATCAACCCAGTTGGAC+TGG | + | chr8_1:73511924-73511943 | Msa1213360:three_prime_UTR | 45.0% | |
| GTGATAAGACCAGTCCAACT+GGG | - | chr8_1:73511936-73511955 | None:intergenic | 45.0% | |
| AGTGATAAGACCAGTCCAAC+TGG | - | chr8_1:73511937-73511956 | None:intergenic | 45.0% | |
| ACTTGTCAGGCACTTCACTT+TGG | - | chr8_1:73512129-73512148 | None:intergenic | 45.0% | |
| ! | TGAAGTGCCTGACAAGTTAC+AGG | + | chr8_1:73512132-73512151 | Msa1213360:three_prime_UTR | 45.0% |
| ! | GAAGTGCCTGACAAGTTACA+GGG | + | chr8_1:73512133-73512152 | Msa1213360:three_prime_UTR | 45.0% |
| ! | GTATCTCCCTGTAACTTGTC+AGG | - | chr8_1:73512142-73512161 | None:intergenic | 45.0% |
| TAGCCGAGTTTACTAGGTTG+TGG | + | chr8_1:73512197-73512216 | Msa1213360:three_prime_UTR | 45.0% | |
| !! | AATTTAATTAACTTTAATTA+GGG | + | chr8_1:73510045-73510064 | Msa1213360:intron | 5.0% |
| !! | ATTAATGAATTTAAATTATT+CGG | + | chr8_1:73512025-73512044 | Msa1213360:three_prime_UTR | 5.0% |
| !! | GAGCGACGCTGTTTTCGAAT+CGG | + | chr8_1:73509738-73509757 | Msa1213360:CDS | 50.0% |
| AGCATCCACCAAGCTCAATG+CGG | + | chr8_1:73509946-73509965 | Msa1213360:CDS | 50.0% | |
| AGTAGCTTCCGCATTGAGCT+TGG | - | chr8_1:73509957-73509976 | None:intergenic | 50.0% | |
| GCAATCTAGGCCGCATATCT+GGG | - | chr8_1:73510348-73510367 | None:intergenic | 50.0% | |
| CAGATATGCGGCCTAGATTG+CGG | + | chr8_1:73510347-73510366 | Msa1213360:intron | 50.0% | |
| !! | TCCTGGTTCTACTTCCGATC+TGG | + | chr8_1:73510674-73510693 | Msa1213360:CDS | 50.0% |
| TCCAGATCGGAAGTAGAACC+AGG | - | chr8_1:73510678-73510697 | None:intergenic | 50.0% | |
| ! | GAAAGGGGGCCAACATTTTG+GGG | + | chr8_1:73511376-73511395 | Msa1213360:intron | 50.0% |
| ! | AAAGGGGGCCAACATTTTGG+GGG | + | chr8_1:73511377-73511396 | Msa1213360:intron | 50.0% |
| TTGCAATAGTGCAGAGCTCC+AGG | - | chr8_1:73511486-73511505 | None:intergenic | 50.0% | |
| AGCTTCCGCATTGAGCTTGG+TGG | - | chr8_1:73509954-73509973 | None:intergenic | 55.0% | |
| GCGGAGAATCATGGTCAACG+TGG | + | chr8_1:73510281-73510300 | Msa1213360:intron | 55.0% | |
| CGCAATCTAGGCCGCATATC+TGG | - | chr8_1:73510349-73510368 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 73509648 | 73512330 | 73509648 | ID=Msa1213360;Name=Msa1213360 |
| chr8_1 | mRNA | 73509648 | 73512330 | 73509648 | ID=Msa1213360-mRNA-1;Parent=Msa1213360;Name=Msa1213360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=67|1|1|1|0.75|0.66|9|375|246 |
| chr8_1 | exon | 73509648 | 73509848 | 73509648 | ID=Msa1213360-mRNA-1:exon:24974;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73509943 | 73510000 | 73509943 | ID=Msa1213360-mRNA-1:exon:24975;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73510116 | 73510241 | 73510116 | ID=Msa1213360-mRNA-1:exon:24976;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73510648 | 73510740 | 73510648 | ID=Msa1213360-mRNA-1:exon:24977;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73510852 | 73510981 | 73510852 | ID=Msa1213360-mRNA-1:exon:24978;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73511621 | 73511758 | 73511621 | ID=Msa1213360-mRNA-1:exon:24979;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73511849 | 73512047 | 73511849 | ID=Msa1213360-mRNA-1:exon:24980;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73512070 | 73512236 | 73512070 | ID=Msa1213360-mRNA-1:exon:24981;Parent=Msa1213360-mRNA-1 |
| chr8_1 | exon | 73512260 | 73512330 | 73512260 | ID=Msa1213360-mRNA-1:exon:24982;Parent=Msa1213360-mRNA-1 |
| chr8_1 | five_prime_UTR | 73509648 | 73509714 | 73509648 | ID=Msa1213360-mRNA-1:five_prime_utr;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73509715 | 73509848 | 73509715 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73509943 | 73510000 | 73509943 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73510116 | 73510241 | 73510116 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73510648 | 73510740 | 73510648 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73510852 | 73510981 | 73510852 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73511621 | 73511758 | 73511621 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | CDS | 73511849 | 73511910 | 73511849 | ID=Msa1213360-mRNA-1:cds;Parent=Msa1213360-mRNA-1 |
| chr8_1 | three_prime_UTR | 73511911 | 73512047 | 73511911 | ID=Msa1213360-mRNA-1:three_prime_utr;Parent=Msa1213360-mRNA-1 |
| chr8_1 | three_prime_UTR | 73512070 | 73512236 | 73512070 | ID=Msa1213360-mRNA-1:three_prime_utr;Parent=Msa1213360-mRNA-1 |
| chr8_1 | three_prime_UTR | 73512260 | 73512330 | 73512260 | ID=Msa1213360-mRNA-1:three_prime_utr;Parent=Msa1213360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
