AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004600 MtrunA17_Chr7g0214681 99.174 121 1 0 1 121 1 121 8.58e-80 231
Msa1004600 MtrunA17_Chr5g0441811 48.201 139 68 1 1 139 2 136 6.18e-43 138
Msa1004600 MtrunA17_Chr3g0094381 48.551 138 67 1 1 138 2 135 4.23e-42 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004600 AT1G05785.7 66.942 121 40 0 1 121 1 121 2.65e-54 168
Msa1004600 AT1G05785.6 66.942 121 40 0 1 121 1 121 2.65e-54 168
Msa1004600 AT1G05785.1 66.942 121 40 0 1 121 1 121 3.40e-54 167
Msa1004600 AT1G05785.5 66.942 121 40 0 1 121 1 121 3.40e-54 167
Msa1004600 AT1G05785.2 66.942 121 40 0 1 121 1 121 3.40e-54 167
Msa1004600 AT1G05785.4 66.942 121 40 0 1 121 1 121 4.53e-54 166
Msa1004600 AT1G05785.3 64.167 120 42 1 9 127 3 122 1.38e-48 152
Msa1004600 AT3G49420.3 48.921 139 67 1 1 139 2 136 4.52e-44 141
Msa1004600 AT3G49420.1 48.921 139 67 1 1 139 2 136 4.52e-44 141
Msa1004600 AT3G49420.2 48.921 139 67 1 1 139 2 136 4.52e-44 141
Msa1004600 AT5G01430.2 48.921 139 67 1 1 139 2 136 4.52e-44 141
Msa1004600 AT5G01430.1 48.921 139 67 1 1 139 2 136 4.52e-44 141
Msa1004600 AT3G03180.1 47.826 138 68 1 2 139 3 136 3.24e-40 132
Msa1004600 AT3G03180.3 51.240 121 59 0 2 122 3 123 3.22e-39 130
Msa1004600 AT3G03180.2 44.118 102 53 1 38 139 1 98 2.01e-22 85.5

Find 63 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATCTTCTTCACGTTTCT+TGG 0.168278 7_1:+2142092 Msa1004600:CDS
TTTATATTGTGGCTATATTT+TGG 0.214973 7_1:+2144871 Msa1004600:three_prime_UTR
CTAAATTTCACGACAAATTT+CGG 0.257394 7_1:-2144848 None:intergenic
TGTTGTTGCTTCTAACTATA+GGG 0.262227 7_1:+2144709 Msa1004600:CDS
TTGTTGTTGCTTCTAACTAT+AGG 0.281747 7_1:+2144708 Msa1004600:CDS
GAGATTGGCATAGGGCTAAT+TGG 0.295268 7_1:+2142065 Msa1004600:intron
GGCATAGGGCTAATTGGTTT+TGG 0.297009 7_1:+2142071 Msa1004600:CDS
ACCAAAAGTATACAATTAAA+AGG 0.302412 7_1:-2145141 None:intergenic
AGACGAAAACGGGGATATAA+TGG 0.314103 7_1:-2141095 None:intergenic
TATACAATTAAAAGGAAATT+AGG 0.332587 7_1:-2145133 None:intergenic
TCAAGTATTATACCAACTAT+TGG 0.335018 7_1:-2143858 None:intergenic
CTCTACCATATCCCAGTTGT+TGG 0.338776 7_1:+2144025 Msa1004600:CDS
CGTATAACCCATCCAACAAC+TGG 0.347272 7_1:-2144037 None:intergenic
GGTATAATACTTGAAATATA+CGG 0.360101 7_1:+2143867 Msa1004600:CDS
CCCATCCAACAACTGGGATA+TGG 0.361362 7_1:-2144030 None:intergenic
CAGTTGTTGGATGGGTTATA+CGG 0.363526 7_1:+2144038 Msa1004600:CDS
GATGTAGACTTGTACATGTT+TGG 0.364577 7_1:+2145004 Msa1004600:three_prime_UTR
AAAGATGCTTATATGCCTTA+TGG 0.365602 7_1:-2144823 None:intergenic
AGACAGCTTCAGACGAAAAC+GGG 0.372307 7_1:-2141105 None:intergenic
GGTACTGCATCATTTCTTCT+AGG 0.375928 7_1:+2143810 Msa1004600:CDS
TTGGTTTATGGAAAATTTAG+AGG 0.376517 7_1:+2145159 Msa1004600:three_prime_UTR
ATTTCAGTAAATCTACAGTT+TGG 0.384537 7_1:+2145037 Msa1004600:three_prime_UTR
CACTAGTAGAGCAAACTATA+AGG 0.384542 7_1:+2142312 Msa1004600:CDS
ACCATATCCCAGTTGTTGGA+TGG 0.417356 7_1:+2144029 Msa1004600:CDS
GACGAAAACGGGGATATAAT+GGG 0.421019 7_1:-2141094 None:intergenic
GTAAAGCAGTTTGGTTTCCT+TGG 0.421788 7_1:+2144736 Msa1004600:exon
AATCAGATACTTTGGTTGGC+AGG 0.430906 7_1:+2142247 Msa1004600:intron
TAGGGGCTCGTAAAGCAGTT+TGG 0.437396 7_1:+2144727 Msa1004600:exon
GCATCTGGAATCAGATACTT+TGG 0.437779 7_1:+2142239 Msa1004600:intron
TGGTGTGTAAGCCAGCATTA+AGG 0.440682 7_1:+2145081 Msa1004600:three_prime_UTR
ATTTACCTTGGTGGTGAAAG+AGG 0.445028 7_1:-2141164 None:intergenic
AAGACAGCTTCAGACGAAAA+CGG 0.478906 7_1:-2141106 None:intergenic
AAAATGAAAATTTACCTTGG+TGG 0.482642 7_1:-2141173 None:intergenic
TTTGTGAGGTGGCCAATAGT+TGG 0.500733 7_1:+2143846 Msa1004600:CDS
ATCAGATACTTTGGTTGGCA+GGG 0.502636 7_1:+2142248 Msa1004600:intron
ATCTCCTTCTGCAATAATCA+AGG 0.502775 7_1:-2144684 None:intergenic
CTGGAATCAGATACTTTGGT+TGG 0.506803 7_1:+2142243 Msa1004600:intron
CCATATCCCAGTTGTTGGAT+GGG 0.513262 7_1:+2144030 Msa1004600:CDS
GTGAAATTTAGTTTATATTG+TGG 0.515366 7_1:+2144860 Msa1004600:three_prime_UTR
AACATGTACAAGTCTACATC+AGG 0.518942 7_1:-2145001 None:intergenic
GTTGTTGCTTCTAACTATAG+GGG 0.519072 7_1:+2144710 Msa1004600:CDS
CTGTCATCAATCCTTAATGC+TGG 0.538050 7_1:-2145092 None:intergenic
GACCGTGGTTTGCTTGCTCT+AGG 0.538182 7_1:+2142131 Msa1004600:CDS
CGGGGATATAATGGGCCGGT+GGG 0.540183 7_1:-2141086 None:intergenic
AAACATGCAGAGATTGGCAT+AGG 0.550538 7_1:+2142056 Msa1004600:intron
AGGAATCAACTAACCTGAAG+AGG 0.556909 7_1:-2143899 None:intergenic
AGCTCCTTGATTATTGCAGA+AGG 0.563248 7_1:+2144680 Msa1004600:intron
TCAGATACTTTGGTTGGCAG+GGG 0.564679 7_1:+2142249 Msa1004600:intron
CAACAACTGGGATATGGTAG+AGG 0.565494 7_1:-2144024 None:intergenic
AGACTTGTACATGTTTGGAT+TGG 0.589538 7_1:+2145009 Msa1004600:three_prime_UTR
TTAGTCGTCTACCAGCATGA+AGG 0.605802 7_1:+2144972 Msa1004600:three_prime_UTR
TCAGGAGTGAGCCTTCATGC+TGG 0.615447 7_1:-2144983 None:intergenic
AACATGCAGAGATTGGCATA+GGG 0.629442 7_1:+2142057 Msa1004600:intron
ACTAGTGAAGAGTGACCACA+TGG 0.643753 7_1:-2142296 None:intergenic
AAAACGGGGATATAATGGGC+CGG 0.647305 7_1:-2141090 None:intergenic
GTAACAAATCTATGACCCAC+CGG 0.659380 7_1:+2141071 Msa1004600:five_prime_UTR
ACTTCAACAAAATAATGTGA+TGG 0.660768 7_1:+2145061 Msa1004600:three_prime_UTR
TGCTTGGTTGGCGTTCCATG+TGG 0.666201 7_1:+2142281 Msa1004600:CDS
GACAGCTTCAGACGAAAACG+GGG 0.667293 7_1:-2141104 None:intergenic
GTATAACCCATCCAACAACT+GGG 0.675755 7_1:-2144036 None:intergenic
AATAACCTCTTTCACCACCA+AGG 0.676631 7_1:+2141159 Msa1004600:five_prime_UTR
TTCCTAGAGCAAGCAAACCA+CGG 0.680667 7_1:-2142133 None:intergenic
CAGACAAATCACTAACACCA+AGG 0.704890 7_1:-2144753 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAAAATAAAAATAA+AGG - chr7_1:2141730-2141749 None:intergenic 0.0%
!! TTATTTAAATTGTTTAACTA+CGG + chr7_1:2141859-2141878 Msa1004600:intron 10.0%
!!! TATATATTTTTCTTTAGAAT+AGG + chr7_1:2142188-2142207 Msa1004600:intron 10.0%
!!! ATATATTTTTCTTTAGAATA+GGG + chr7_1:2142189-2142208 Msa1004600:intron 10.0%
!! AAAAAAATGAAAATTTACCT+TGG - chr7_1:2141179-2141198 None:intergenic 15.0%
!!! AATTTGATTGATTTCTAATA+AGG + chr7_1:2141236-2141255 Msa1004600:intron 15.0%
!!! ATTTGATTGATTTCTAATAA+GGG + chr7_1:2141237-2141256 Msa1004600:intron 15.0%
!! TTAAGTTATTTATCTAAACA+AGG - chr7_1:2141511-2141530 None:intergenic 15.0%
!!! AAATAAAAATAAAGGTGTAT+TGG - chr7_1:2141722-2141741 None:intergenic 15.0%
!! GAAATAAAATGTTTCATTAA+TGG - chr7_1:2142362-2142381 None:intergenic 15.0%
!!! TTATTTTCTTAAATTGTTAC+CGG - chr7_1:2142512-2142531 None:intergenic 15.0%
!! TATACAATTAAAAGGAAATT+AGG - chr7_1:2145136-2145155 None:intergenic 15.0%
!!! ATTTTTGCTTGTAATCAATA+TGG + chr7_1:2141349-2141368 Msa1004600:exon 20.0%
!!! TGATTTGGTTTTAAAAACAT+TGG - chr7_1:2141787-2141806 None:intergenic 20.0%
!!! TTTTTAAAACCAAATCAAAC+CGG + chr7_1:2141790-2141809 Msa1004600:intron 20.0%
!!! CATGTTTTTCAAAATTTTCA+AGG - chr7_1:2142043-2142062 None:intergenic 20.0%
!! TATCGTACAAATATCAAAAT+TGG - chr7_1:2143038-2143057 None:intergenic 20.0%
!!! TTCCAAATCTACATTTATTT+TGG + chr7_1:2143105-2143124 Msa1004600:intron 20.0%
!! TTCCAAAATAAATGTAGATT+TGG - chr7_1:2143110-2143129 None:intergenic 20.0%
!!! TTCAACTTTTAATGATTACT+TGG + chr7_1:2143342-2143361 Msa1004600:intron 20.0%
!!! TATTTTTCTTTAAGAGTACT+CGG + chr7_1:2143591-2143610 Msa1004600:intron 20.0%
!!! ACATTATTTACTTCTTTTGT+AGG + chr7_1:2143788-2143807 Msa1004600:intron 20.0%
!!! CATTATTTACTTCTTTTGTA+GGG + chr7_1:2143789-2143808 Msa1004600:intron 20.0%
!! GGTATAATACTTGAAATATA+CGG + chr7_1:2143867-2143886 Msa1004600:CDS 20.0%
!! GAAATAAATATAGATAGCAT+AGG + chr7_1:2144191-2144210 Msa1004600:intron 20.0%
!!! TATTGAAAAGTGTTAGTTTA+TGG - chr7_1:2144258-2144277 None:intergenic 20.0%
!!! TTTTCAATATACTTTCCATT+TGG + chr7_1:2144269-2144288 Msa1004600:intron 20.0%
!! TTGAATTAAATCATACCAAA+TGG - chr7_1:2144287-2144306 None:intergenic 20.0%
!!! GTGAAATTTAGTTTATATTG+TGG + chr7_1:2144860-2144879 Msa1004600:three_prime_UTR 20.0%
!!! TTTATATTGTGGCTATATTT+TGG + chr7_1:2144871-2144890 Msa1004600:three_prime_UTR 20.0%
!!! TCCTTTTAATTGTATACTTT+TGG + chr7_1:2145140-2145159 Msa1004600:three_prime_UTR 20.0%
!!! ACCAAAAGTATACAATTAAA+AGG - chr7_1:2145144-2145163 None:intergenic 20.0%
!!! AATTGTATACTTTTGGTTTA+TGG + chr7_1:2145147-2145166 Msa1004600:three_prime_UTR 20.0%
!!! ATTTAGAGGAAATTTTGTTT+TGG + chr7_1:2145173-2145192 Msa1004600:three_prime_UTR 20.0%
!!! TTTAGAGGAAATTTTGTTTT+GGG + chr7_1:2145174-2145193 Msa1004600:three_prime_UTR 20.0%
! AAAATGAAAATTTACCTTGG+TGG - chr7_1:2141176-2141195 None:intergenic 25.0%
! TAAGCAATAACTTGAATTGA+AGG - chr7_1:2141204-2141223 None:intergenic 25.0%
! GATTTCTAATAAGGGTTAAT+TGG + chr7_1:2141245-2141264 Msa1004600:intron 25.0%
!! AAAATAAAGGTGTATTGGAT+TGG - chr7_1:2141717-2141736 None:intergenic 25.0%
! AATGTTTCAAAAACCAAAAC+CGG - chr7_1:2141950-2141969 None:intergenic 25.0%
!!! GATTCATGTTGACTTAATTT+TGG + chr7_1:2142211-2142230 Msa1004600:intron 25.0%
!!! TGTTGACTTAATTTTGGTTT+TGG + chr7_1:2142217-2142236 Msa1004600:intron 25.0%
! CACCTTTACTGAATAAAAAA+GGG - chr7_1:2142774-2142793 None:intergenic 25.0%
! ACACCTTTACTGAATAAAAA+AGG - chr7_1:2142775-2142794 None:intergenic 25.0%
! TTTGTACAGTAAATTTACCA+GGG - chr7_1:2143068-2143087 None:intergenic 25.0%
! ATTTGTACAGTAAATTTACC+AGG - chr7_1:2143069-2143088 None:intergenic 25.0%
! ATCAATAAATAACCTCTAAC+TGG - chr7_1:2143424-2143443 None:intergenic 25.0%
! AAAACAATTCTTCAGTTCAT+TGG - chr7_1:2143539-2143558 None:intergenic 25.0%
! TCAAACTAGATATTTATGAC+AGG - chr7_1:2143709-2143728 None:intergenic 25.0%
! TCAAGTATTATACCAACTAT+TGG - chr7_1:2143861-2143880 None:intergenic 25.0%
! TGGTATGATTTAATTCAACT+TGG + chr7_1:2144289-2144308 Msa1004600:intron 25.0%
! GGTATGATTTAATTCAACTT+GGG + chr7_1:2144290-2144309 Msa1004600:intron 25.0%
! ATGTCAAATACTCACATATA+GGG - chr7_1:2144593-2144612 None:intergenic 25.0%
! CTAAATTTCACGACAAATTT+CGG - chr7_1:2144851-2144870 None:intergenic 25.0%
! GTAAACAAGAACAAAAAACA+AGG + chr7_1:2144929-2144948 Msa1004600:three_prime_UTR 25.0%
! ATTTCAGTAAATCTACAGTT+TGG + chr7_1:2145037-2145056 Msa1004600:three_prime_UTR 25.0%
! ACTTCAACAAAATAATGTGA+TGG + chr7_1:2145061-2145080 Msa1004600:three_prime_UTR 25.0%
! TTGGTTTATGGAAAATTTAG+AGG + chr7_1:2145159-2145178 Msa1004600:three_prime_UTR 25.0%
!!! TTAGAGGAAATTTTGTTTTG+GGG + chr7_1:2145175-2145194 Msa1004600:three_prime_UTR 25.0%
!! GTTGTTTTCGTAAGCTATTA+TGG + chr7_1:2141565-2141584 Msa1004600:intron 30.0%
AATAAGCTAAAAACAGTTCG+TGG + chr7_1:2141600-2141619 Msa1004600:intron 30.0%
!!! GGTTTTGGTTTTTGAAACAT+TGG + chr7_1:2141949-2141968 Msa1004600:intron 30.0%
TTTGAAAAACATGCAGAGAT+TGG + chr7_1:2142050-2142069 Msa1004600:intron 30.0%
! ATAATTCTTTTCTTTGACCG+TGG + chr7_1:2142116-2142135 Msa1004600:CDS 30.0%
!!! TTAATTTTGGTTTTGGCATC+TGG + chr7_1:2142224-2142243 Msa1004600:intron 30.0%
ATATCACAAGAGATGCATTA+GGG - chr7_1:2142400-2142419 None:intergenic 30.0%
!!! AGCCCTTTTTTATTCAGTAA+AGG + chr7_1:2142769-2142788 Msa1004600:intron 30.0%
CTTAATCTTAGTTAGCACAA+CGG - chr7_1:2142807-2142826 None:intergenic 30.0%
TTTGTATATCACATCAGCAT+AGG + chr7_1:2142917-2142936 Msa1004600:intron 30.0%
TTGGTCAAACACAAATAGAA+AGG - chr7_1:2143019-2143038 None:intergenic 30.0%
TCAGAAAATGACAAACCTAA+GGG - chr7_1:2143258-2143277 None:intergenic 30.0%
ATCAGAAAATGACAAACCTA+AGG - chr7_1:2143259-2143278 None:intergenic 30.0%
! AAAAGTAGGAACTATTTTGC+TGG - chr7_1:2143394-2143413 None:intergenic 30.0%
!! ATTTTACTTGAAGTACTCCT+TGG + chr7_1:2143482-2143501 Msa1004600:intron 30.0%
! GGATAATGAAGCATTCTATA+TGG + chr7_1:2143756-2143775 Msa1004600:intron 30.0%
!! GTCTCTTTTTCATTTTTGTG+AGG + chr7_1:2143832-2143851 Msa1004600:CDS 30.0%
!! TCTTTTTCATTTTTGTGAGG+TGG + chr7_1:2143835-2143854 Msa1004600:CDS 30.0%
! GCACTTATCATTGATGTTTT+TGG + chr7_1:2143968-2143987 Msa1004600:intron 30.0%
TTAATCATGCTAATCACGTA+TGG - chr7_1:2144469-2144488 None:intergenic 30.0%
TAGGGATATTGTGAGAATAT+AGG - chr7_1:2144575-2144594 None:intergenic 30.0%
CATGTCAAATACTCACATAT+AGG - chr7_1:2144594-2144613 None:intergenic 30.0%
! TTGTTGTTGCTTCTAACTAT+AGG + chr7_1:2144708-2144727 Msa1004600:CDS 30.0%
! TGTTGTTGCTTCTAACTATA+GGG + chr7_1:2144709-2144728 Msa1004600:CDS 30.0%
! TTTTGTAGTTGTTTGCCATA+AGG + chr7_1:2144808-2144827 Msa1004600:three_prime_UTR 30.0%
AAAGATGCTTATATGCCTTA+TGG - chr7_1:2144826-2144845 None:intergenic 30.0%
GAAGAAGAAGAAGAATGAAG+TGG - chr7_1:2141133-2141152 None:intergenic 35.0%
GAATCTTACTGTAACTGCAT+TGG + chr7_1:2141466-2141485 Msa1004600:intron 35.0%
AAGCTATTATGGAAAGCTTC+TGG + chr7_1:2141576-2141595 Msa1004600:intron 35.0%
TGTGAATTGTGACACTGTTT+AGG - chr7_1:2141655-2141674 None:intergenic 35.0%
TAAAACCAAATCAAACCGGA+CGG + chr7_1:2141794-2141813 Msa1004600:intron 35.0%
AAAGTAGTTGAACCATGACT+CGG + chr7_1:2141905-2141924 Msa1004600:intron 35.0%
CACTAGTAGAGCAAACTATA+AGG + chr7_1:2142312-2142331 Msa1004600:CDS 35.0%
CATATCACAAGAGATGCATT+AGG - chr7_1:2142401-2142420 None:intergenic 35.0%
CTAATGCATCTCTTGTGATA+TGG + chr7_1:2142399-2142418 Msa1004600:intron 35.0%
!! TGATATGGATTAGTGAATCC+TGG + chr7_1:2142414-2142433 Msa1004600:intron 35.0%
TGTACTTCTAGTCACACAAT+AGG - chr7_1:2142655-2142674 None:intergenic 35.0%
TCAAATAAGCCTCTTGTAGT+GGG + chr7_1:2142725-2142744 Msa1004600:intron 35.0%
! AGATGATAGTGTTGAAGCAA+TGG + chr7_1:2142948-2142967 Msa1004600:intron 35.0%
! GATGATAGTGTTGAAGCAAT+GGG + chr7_1:2142949-2142968 Msa1004600:intron 35.0%
!! CTGCAGGAAACTTTTTAACT+AGG - chr7_1:2143182-2143201 None:intergenic 35.0%
ATATATTAACGCTACCTCCT+TGG - chr7_1:2143206-2143225 None:intergenic 35.0%
ATATTTCCGACATATCCCTT+AGG + chr7_1:2143240-2143259 Msa1004600:intron 35.0%
GATTACTTGGACAAAGAAAC+TGG + chr7_1:2143355-2143374 Msa1004600:intron 35.0%
!!! GTAAACTTCTGTTTTTGCCA+AGG - chr7_1:2143502-2143521 None:intergenic 35.0%
!!! ATTGATGTTTTTGGTTGCAG+TGG + chr7_1:2143977-2143996 Msa1004600:intron 35.0%
!!! TTTTTGGTTGCAGTGGTTTT+TGG + chr7_1:2143984-2144003 Msa1004600:intron 35.0%
CAGACAGACATACAAAAAGA+GGG - chr7_1:2144131-2144150 None:intergenic 35.0%
ACAGACAGACATACAAAAAG+AGG - chr7_1:2144132-2144151 None:intergenic 35.0%
TACACATGCATACATACAAG+TGG - chr7_1:2144165-2144184 None:intergenic 35.0%
!! TAAATGACACCGATTCCATA+GGG + chr7_1:2144232-2144251 Msa1004600:intron 35.0%
ATTTCCTGTCTGTATCAGTA+AGG + chr7_1:2144336-2144355 Msa1004600:intron 35.0%
CTCTTTGCAAGTCATCATAT+AGG - chr7_1:2144438-2144457 None:intergenic 35.0%
TCATATTTGCAACACACACA+TGG - chr7_1:2144495-2144514 None:intergenic 35.0%
GTGTGTGTTGCAAATATGAT+CGG + chr7_1:2144496-2144515 Msa1004600:intron 35.0%
! CTTCTAGATTGACTGTGTTT+TGG + chr7_1:2144528-2144547 Msa1004600:intron 35.0%
ATCTCCTTCTGCAATAATCA+AGG - chr7_1:2144687-2144706 None:intergenic 35.0%
! GTTGTTGCTTCTAACTATAG+GGG + chr7_1:2144710-2144729 Msa1004600:CDS 35.0%
CAAAAAACAAGGATACAAGC+TGG + chr7_1:2144940-2144959 Msa1004600:three_prime_UTR 35.0%
AACATGTACAAGTCTACATC+AGG - chr7_1:2145004-2145023 None:intergenic 35.0%
GATGTAGACTTGTACATGTT+TGG + chr7_1:2145004-2145023 Msa1004600:three_prime_UTR 35.0%
AGACTTGTACATGTTTGGAT+TGG + chr7_1:2145009-2145028 Msa1004600:three_prime_UTR 35.0%
GTAACAAATCTATGACCCAC+CGG + chr7_1:2141071-2141090 Msa1004600:five_prime_UTR 40.0%
GACGAAAACGGGGATATAAT+GGG - chr7_1:2141097-2141116 None:intergenic 40.0%
AGACGAAAACGGGGATATAA+TGG - chr7_1:2141098-2141117 None:intergenic 40.0%
AAGACAGCTTCAGACGAAAA+CGG - chr7_1:2141109-2141128 None:intergenic 40.0%
AATAACCTCTTTCACCACCA+AGG + chr7_1:2141159-2141178 Msa1004600:five_prime_UTR 40.0%
!! ATTTACCTTGGTGGTGAAAG+AGG - chr7_1:2141167-2141186 None:intergenic 40.0%
TCACAACTCACAAGTGCTTA+TGG + chr7_1:2141670-2141689 Msa1004600:intron 40.0%
TACTTTAAACCGCTCGAATC+AGG - chr7_1:2141891-2141910 None:intergenic 40.0%
AAACATGCAGAGATTGGCAT+AGG + chr7_1:2142056-2142075 Msa1004600:intron 40.0%
AACATGCAGAGATTGGCATA+GGG + chr7_1:2142057-2142076 Msa1004600:intron 40.0%
! GCATCTGGAATCAGATACTT+TGG + chr7_1:2142239-2142258 Msa1004600:intron 40.0%
CTGGAATCAGATACTTTGGT+TGG + chr7_1:2142243-2142262 Msa1004600:intron 40.0%
AATCAGATACTTTGGTTGGC+AGG + chr7_1:2142247-2142266 Msa1004600:intron 40.0%
ATCAGATACTTTGGTTGGCA+GGG + chr7_1:2142248-2142267 Msa1004600:intron 40.0%
!! ATGGATTAGTGAATCCTGGT+AGG + chr7_1:2142418-2142437 Msa1004600:intron 40.0%
GACACAACTTTAATCCGAAG+TGG + chr7_1:2142596-2142615 Msa1004600:intron 40.0%
ACAACTTTAATCCGAAGTGG+CGG + chr7_1:2142599-2142618 Msa1004600:intron 40.0%
ATAAGCCTCTTGCAAATGCA+AGG + chr7_1:2142690-2142709 Msa1004600:intron 40.0%
CAAGAGGCTTATTTGACAAG+AGG - chr7_1:2142721-2142740 None:intergenic 40.0%
GTCAAATAAGCCTCTTGTAG+TGG + chr7_1:2142724-2142743 Msa1004600:intron 40.0%
! TTGTACGATAGTTGATACCC+TGG + chr7_1:2143048-2143067 Msa1004600:intron 40.0%
AAAAAGTTTCCTGCAGTCCA+AGG + chr7_1:2143186-2143205 Msa1004600:intron 40.0%
GACAAACCTAAGGGATATGT+CGG - chr7_1:2143249-2143268 None:intergenic 40.0%
TAACTGGCAAGTGGAAAAGT+AGG - chr7_1:2143408-2143427 None:intergenic 40.0%
AATAACCTCTAACTGGCAAG+TGG - chr7_1:2143417-2143436 None:intergenic 40.0%
GGTACTGCATCATTTCTTCT+AGG + chr7_1:2143810-2143829 Msa1004600:CDS 40.0%
AGGAATCAACTAACCTGAAG+AGG - chr7_1:2143902-2143921 None:intergenic 40.0%
GAGAGTTCAAGAAGTCATCT+AGG - chr7_1:2143922-2143941 None:intergenic 40.0%
GTATAACCCATCCAACAACT+GGG - chr7_1:2144039-2144058 None:intergenic 40.0%
!! CAGTTGTTGGATGGGTTATA+CGG + chr7_1:2144038-2144057 Msa1004600:CDS 40.0%
GACATACAAAAAGAGGGAGA+GGG - chr7_1:2144125-2144144 None:intergenic 40.0%
AGACATACAAAAAGAGGGAG+AGG - chr7_1:2144126-2144145 None:intergenic 40.0%
!! CTAAATGACACCGATTCCAT+AGG + chr7_1:2144231-2144250 Msa1004600:intron 40.0%
AGTTTATGGCCCTATGGAAT+CGG - chr7_1:2144244-2144263 None:intergenic 40.0%
! AGTGTTAGTTTATGGCCCTA+TGG - chr7_1:2144250-2144269 None:intergenic 40.0%
CAAACCTTACTGATACAGAC+AGG - chr7_1:2144343-2144362 None:intergenic 40.0%
AGCTCCTTGATTATTGCAGA+AGG + chr7_1:2144680-2144699 Msa1004600:intron 40.0%
! GTAAAGCAGTTTGGTTTCCT+TGG + chr7_1:2144736-2144755 Msa1004600:exon 40.0%
CAGACAAATCACTAACACCA+AGG - chr7_1:2144756-2144775 None:intergenic 40.0%
!!! GGCTATATTTTGGTGCTTCA+AGG + chr7_1:2144881-2144900 Msa1004600:three_prime_UTR 40.0%
CTGTCATCAATCCTTAATGC+TGG - chr7_1:2145095-2145114 None:intergenic 40.0%
!! AAAACGGGGATATAATGGGC+CGG - chr7_1:2141093-2141112 None:intergenic 45.0%
AGACAGCTTCAGACGAAAAC+GGG - chr7_1:2141108-2141127 None:intergenic 45.0%
CTGTAGACAATGCCAGCTTA+CGG - chr7_1:2141834-2141853 None:intergenic 45.0%
AGCTGGCATTGTCTACAGTT+CGG + chr7_1:2141836-2141855 Msa1004600:intron 45.0%
GAGATTGGCATAGGGCTAAT+TGG + chr7_1:2142065-2142084 Msa1004600:intron 45.0%
!! GGCATAGGGCTAATTGGTTT+TGG + chr7_1:2142071-2142090 Msa1004600:CDS 45.0%
GGCATCTTCTTCACGTTTCT+TGG + chr7_1:2142092-2142111 Msa1004600:CDS 45.0%
TTCCTAGAGCAAGCAAACCA+CGG - chr7_1:2142136-2142155 None:intergenic 45.0%
TCAGATACTTTGGTTGGCAG+GGG + chr7_1:2142249-2142268 Msa1004600:intron 45.0%
! GGGTAGCAATTTTGCTTGGT+TGG + chr7_1:2142269-2142288 Msa1004600:CDS 45.0%
ACTAGTGAAGAGTGACCACA+TGG - chr7_1:2142299-2142318 None:intergenic 45.0%
TGTCAGTGTCAGTGCTTCAT+AGG - chr7_1:2142481-2142500 None:intergenic 45.0%
TGACACTGACACATAGACTC+CGG + chr7_1:2142490-2142509 Msa1004600:intron 45.0%
CCTTACCTTGCATTTGCAAG+AGG - chr7_1:2142698-2142717 None:intergenic 45.0%
CCTCTTGCAAATGCAAGGTA+AGG + chr7_1:2142695-2142714 Msa1004600:intron 45.0%
! ATAAGCCTCTTGTAGTGGGA+TGG + chr7_1:2142729-2142748 Msa1004600:intron 45.0%
! TAAGCCTCTTGTAGTGGGAT+GGG + chr7_1:2142730-2142749 Msa1004600:intron 45.0%
CCAGTTTAGCAGATCTAGAG+AGG - chr7_1:2142888-2142907 None:intergenic 45.0%
CCTCTCTAGATCTGCTAAAC+TGG + chr7_1:2142885-2142904 Msa1004600:intron 45.0%
! CTGATGACTCGTTGATTGAG+AGG + chr7_1:2143274-2143293 Msa1004600:intron 45.0%
! CTTTTCCACTTGCCAGTTAG+AGG + chr7_1:2143409-2143428 Msa1004600:intron 45.0%
!! TTTAAGAGTACTCGGCTGCA+TGG + chr7_1:2143599-2143618 Msa1004600:intron 45.0%
TTTGTGAGGTGGCCAATAGT+TGG + chr7_1:2143846-2143865 Msa1004600:CDS 45.0%
! ACGGTTGTGTTTTCCTCTTC+AGG + chr7_1:2143886-2143905 Msa1004600:CDS 45.0%
CAACAACTGGGATATGGTAG+AGG - chr7_1:2144027-2144046 None:intergenic 45.0%
CTCTACCATATCCCAGTTGT+TGG + chr7_1:2144025-2144044 Msa1004600:CDS 45.0%
ACCATATCCCAGTTGTTGGA+TGG + chr7_1:2144029-2144048 Msa1004600:CDS 45.0%
CCATATCCCAGTTGTTGGAT+GGG + chr7_1:2144030-2144049 Msa1004600:CDS 45.0%
CGTATAACCCATCCAACAAC+TGG - chr7_1:2144040-2144059 None:intergenic 45.0%
ACAATCTCTGCCCATATGAC+AGG + chr7_1:2144365-2144384 Msa1004600:intron 45.0%
TGATGTCCCACCTGTCATAT+GGG - chr7_1:2144378-2144397 None:intergenic 45.0%
TTGATGTCCCACCTGTCATA+TGG - chr7_1:2144379-2144398 None:intergenic 45.0%
ATGACAGGTGGGACATCAAA+TGG + chr7_1:2144380-2144399 Msa1004600:intron 45.0%
TTAGTCGTCTACCAGCATGA+AGG + chr7_1:2144972-2144991 Msa1004600:three_prime_UTR 45.0%
TGGTGTGTAAGCCAGCATTA+AGG + chr7_1:2145081-2145100 Msa1004600:three_prime_UTR 45.0%
!!! TTTTTAAAATTATTTATGAA+TGG + chr7_1:2143735-2143754 Msa1004600:intron 5.0%
GACAGCTTCAGACGAAAACG+GGG - chr7_1:2141107-2141126 None:intergenic 50.0%
! TCGAACCGTCCGGTTTGATT+TGG - chr7_1:2141802-2141821 None:intergenic 50.0%
GTTCAATCAGTCGAACCGTC+CGG - chr7_1:2141812-2141831 None:intergenic 50.0%
CGACTGATTGAACCGTAAGC+TGG + chr7_1:2141819-2141838 Msa1004600:intron 50.0%
! GTAGTTGAACCATGACTCGG+AGG + chr7_1:2141908-2141927 Msa1004600:intron 50.0%
! GCAGGGGTAGCAATTTTGCT+TGG + chr7_1:2142265-2142284 Msa1004600:CDS 50.0%
ATGTCTGACGACATCCTACC+AGG - chr7_1:2142435-2142454 None:intergenic 50.0%
ACTATGTAGCACCGCCACTT+CGG - chr7_1:2142613-2142632 None:intergenic 50.0%
AGATCCCATCCCACTACAAG+AGG - chr7_1:2142737-2142756 None:intergenic 50.0%
AAGTTTCCTGCAGTCCAAGG+AGG + chr7_1:2143189-2143208 Msa1004600:intron 50.0%
CCCATCCAACAACTGGGATA+TGG - chr7_1:2144033-2144052 None:intergenic 50.0%
TACAAAAAGAGGGAGAGGGC+AGG - chr7_1:2144121-2144140 None:intergenic 50.0%
ATCTCTGCCCATATGACAGG+TGG + chr7_1:2144368-2144387 Msa1004600:intron 50.0%
TCTCTGCCCATATGACAGGT+GGG + chr7_1:2144369-2144388 Msa1004600:intron 50.0%
GGAGCTGCAAAAGAGCAGAA+GGG - chr7_1:2144666-2144685 None:intergenic 50.0%
AGGAGCTGCAAAAGAGCAGA+AGG - chr7_1:2144667-2144686 None:intergenic 50.0%
TAGGGGCTCGTAAAGCAGTT+TGG + chr7_1:2144727-2144746 Msa1004600:exon 50.0%
! CGGTTTCGTCCTGATTCGAG+CGG + chr7_1:2141879-2141898 Msa1004600:intron 55.0%
! CCATGACTCGGAGGTCTTCT+CGG + chr7_1:2141917-2141936 Msa1004600:intron 55.0%
ACTCGGAGGTCTTCTCGGTT+CGG + chr7_1:2141922-2141941 Msa1004600:intron 55.0%
!! GACCGTGGTTTGCTTGCTCT+AGG + chr7_1:2142131-2142150 Msa1004600:CDS 55.0%
TGCTTGGTTGGCGTTCCATG+TGG + chr7_1:2142281-2142300 Msa1004600:CDS 55.0%
!! CACGTGTCGGTGTTAGACAC+TGG - chr7_1:2142560-2142579 None:intergenic 55.0%
GTTGTGTCCAGTGTCCGACA+CGG - chr7_1:2142584-2142603 None:intergenic 55.0%
AACACCAGTGTCGTGTGCAG+TGG + chr7_1:2143131-2143150 Msa1004600:intron 55.0%
ACACCAGTGTCGTGTGCAGT+GGG + chr7_1:2143132-2143151 Msa1004600:intron 55.0%
TTTCCCACTGCACACGACAC+TGG - chr7_1:2143138-2143157 None:intergenic 55.0%
AAAAGAGGGAGAGGGCAGGA+GGG - chr7_1:2144117-2144136 None:intergenic 55.0%
AAAAAGAGGGAGAGGGCAGG+AGG - chr7_1:2144118-2144137 None:intergenic 55.0%
TCAGGAGTGAGCCTTCATGC+TGG - chr7_1:2144986-2145005 None:intergenic 55.0%
!! CGGGGATATAATGGGCCGGT+GGG - chr7_1:2141089-2141108 None:intergenic 60.0%
!! ACGGGGATATAATGGGCCGG+TGG - chr7_1:2141090-2141109 None:intergenic 60.0%
CCGAGAAGACCTCCGAGTCA+TGG - chr7_1:2141920-2141939 None:intergenic 60.0%
!! AGGTCTTCTCGGTTCGGTGC+CGG + chr7_1:2141928-2141947 Msa1004600:intron 60.0%
!!! TCTCGGTTCGGTGCCGGTTT+TGG + chr7_1:2141934-2141953 Msa1004600:intron 60.0%
ACACCGACACGTGTCCGTGT+CGG + chr7_1:2142567-2142586 Msa1004600:intron 60.0%
TGTCCGACACGGACACGTGT+CGG - chr7_1:2142573-2142592 None:intergenic 60.0%
ACGCTACCTCCTTGGACTGC+AGG - chr7_1:2143198-2143217 None:intergenic 60.0%
AAAGAGGGAGAGGGCAGGAG+GGG - chr7_1:2144116-2144135 None:intergenic 60.0%
CACGTGTCCGTGTCGGACAC+TGG + chr7_1:2142574-2142593 Msa1004600:intron 65.0%
AAGAGGGAGAGGGCAGGAGG+GGG - chr7_1:2144115-2144134 None:intergenic 65.0%
AGAGGGCAGGAGGGGGAAGG+CGG - chr7_1:2144108-2144127 None:intergenic 70.0%
GGGAGAGGGCAGGAGGGGGA+AGG - chr7_1:2144111-2144130 None:intergenic 75.0%
! GGGCAGGAGGGGGAAGGCGG+AGG - chr7_1:2144105-2144124 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 2141059 2145282 2141059 ID=Msa1004600;Name=Msa1004600
chr7_1 mRNA 2141059 2145282 2141059 ID=Msa1004600-mRNA-1;Parent=Msa1004600;Name=Msa1004600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=153|0.83|0.85|1|0.66|0.71|7|543|139
chr7_1 exon 2141059 2141180 2141059 ID=Msa1004600-mRNA-1:exon:822;Parent=Msa1004600-mRNA-1
chr7_1 exon 2141337 2141395 2141337 ID=Msa1004600-mRNA-1:exon:823;Parent=Msa1004600-mRNA-1
chr7_1 exon 2142066 2142157 2142066 ID=Msa1004600-mRNA-1:exon:824;Parent=Msa1004600-mRNA-1
chr7_1 exon 2142253 2142333 2142253 ID=Msa1004600-mRNA-1:exon:825;Parent=Msa1004600-mRNA-1
chr7_1 exon 2143810 2143907 2143810 ID=Msa1004600-mRNA-1:exon:826;Parent=Msa1004600-mRNA-1
chr7_1 exon 2143997 2144059 2143997 ID=Msa1004600-mRNA-1:exon:827;Parent=Msa1004600-mRNA-1
chr7_1 exon 2144682 2145282 2144682 ID=Msa1004600-mRNA-1:exon:828;Parent=Msa1004600-mRNA-1
chr7_1 five_prime_UTR 2141059 2141180 2141059 ID=Msa1004600-mRNA-1:five_prime_utr;Parent=Msa1004600-mRNA-1
chr7_1 five_prime_UTR 2141337 2141367 2141337 ID=Msa1004600-mRNA-1:five_prime_utr;Parent=Msa1004600-mRNA-1
chr7_1 CDS 2141368 2141395 2141368 ID=Msa1004600-mRNA-1:cds;Parent=Msa1004600-mRNA-1
chr7_1 CDS 2142066 2142157 2142066 ID=Msa1004600-mRNA-1:cds;Parent=Msa1004600-mRNA-1
chr7_1 CDS 2142253 2142333 2142253 ID=Msa1004600-mRNA-1:cds;Parent=Msa1004600-mRNA-1
chr7_1 CDS 2143810 2143907 2143810 ID=Msa1004600-mRNA-1:cds;Parent=Msa1004600-mRNA-1
chr7_1 CDS 2143997 2144059 2143997 ID=Msa1004600-mRNA-1:cds;Parent=Msa1004600-mRNA-1
chr7_1 CDS 2144682 2144739 2144682 ID=Msa1004600-mRNA-1:cds;Parent=Msa1004600-mRNA-1
chr7_1 three_prime_UTR 2144740 2145282 2144740 ID=Msa1004600-mRNA-1:three_prime_utr;Parent=Msa1004600-mRNA-1
Gene Sequence

>Msa1004600

ATGGCTTATGATATTGATGAGATGAAGAAGATTGGCATAGGGCTAATTGGTTTTGGCATCTTCTTCACGTTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTAGGAAACATACTTTGGTTGGCAGGGGTAGCAATTTTGCTTGGTTGGCGTTCCATGTGGTCACTCTTCACTAGTAGAGCAAACTATAAGGGTACTGCATCATTTCTTCTAGGTCTCTTTTTCATTTTTGTGAGGTGGCCAATAGTTGGTATAATACTTGAAATATACGGTTGTGTTTTCCTCTTCAGTGGTTTTTGGTCATCTGTCAAAGTGTTCCTCTACCATATCCCAGTTGTTGGATGGGTTATACGCTCCTTGATTATTGCAGAAGGAGATTTTGTTGTTGCTTCTAACTATAGGGGCTCGTAA

Protein sequence

>Msa1004600

MAYDIDEMKKIGIGLIGFGIFFTFLGIILFFDRGLLALGNILWLAGVAILLGWRSMWSLFTSRANYKGTASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSVKVFLYHIPVVGWVIRSLIIAEGDFVVASNYRGS*