Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213420 | XP_024637200.1 | 92.683 | 246 | 18 | 0 | 1 | 246 | 4 | 249 | 6.43e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213420 | sp|Q2V0Z5|MIS12_ARATH | 41.393 | 244 | 125 | 6 | 1 | 239 | 1 | 231 | 6.76e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213420 | G7JT53 | 92.683 | 246 | 18 | 0 | 1 | 246 | 4 | 249 | 3.07e-169 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1213420 | 0.803388 | 3.570699e-49 | -8.615850e-47 |
| Msa0017510 | Msa1213420 | 0.822278 | 2.580634e-53 | -8.615850e-47 |
| Msa0028420 | Msa1213420 | 0.802408 | 5.691830e-49 | -8.615850e-47 |
| Msa0089630 | Msa1213420 | 0.813193 | 2.897431e-51 | -8.615850e-47 |
| Msa0110970 | Msa1213420 | 0.816382 | 5.692057e-52 | -8.615850e-47 |
| Msa0677410 | Msa1213420 | 0.811405 | 7.119009e-51 | -8.615850e-47 |
| Msa0683510 | Msa1213420 | 0.801365 | 9.318790e-49 | -8.615850e-47 |
| Msa0822870 | Msa1213420 | 0.800272 | 1.557569e-48 | -8.615850e-47 |
| Msa0157290 | Msa1213420 | 0.822612 | 2.158166e-53 | -8.615850e-47 |
| Msa0200260 | Msa1213420 | 0.809416 | 1.912480e-50 | -8.615850e-47 |
| Msa0392420 | Msa1213420 | 0.819695 | 1.014831e-52 | -8.615850e-47 |
| Msa0392460 | Msa1213420 | 0.816273 | 6.020028e-52 | -8.615850e-47 |
| Msa0392490 | Msa1213420 | 0.821852 | 3.239347e-53 | -8.615850e-47 |
| Msa0422850 | Msa1213420 | 0.804440 | 2.157609e-49 | -8.615850e-47 |
| Msa0422930 | Msa1213420 | 0.807764 | 4.309311e-50 | -8.615850e-47 |
| Msa0428590 | Msa1213420 | 0.812779 | 3.569876e-51 | -8.615850e-47 |
| Msa0475790 | Msa1213420 | 0.819369 | 1.204374e-52 | -8.615850e-47 |
| Msa1004600 | Msa1213420 | 0.801960 | 7.036936e-49 | -8.615850e-47 |
| Msa1047980 | Msa1213420 | 0.816706 | 4.815176e-52 | -8.615850e-47 |
| Msa1092010 | Msa1213420 | 0.803072 | 4.150151e-49 | -8.615850e-47 |
| Msa0239190 | Msa1213420 | 0.803393 | 3.561510e-49 | -8.615850e-47 |
| Msa0239570 | Msa1213420 | 0.815359 | 9.625651e-52 | -8.615850e-47 |
| Msa0261340 | Msa1213420 | 0.806719 | 7.176011e-50 | -8.615850e-47 |
| Msa0277180 | Msa1213420 | 0.833543 | 5.020992e-56 | -8.615850e-47 |
| Msa0316810 | Msa1213420 | 0.828791 | 7.387334e-55 | -8.615850e-47 |
| Msa0317280 | Msa1213420 | 0.815843 | 7.510911e-52 | -8.615850e-47 |
| Msa0344570 | Msa1213420 | 0.810413 | 1.167135e-50 | -8.615850e-47 |
| Msa1124110 | Msa1213420 | 0.801765 | 7.714184e-49 | -8.615850e-47 |
| Msa1151910 | Msa1213420 | 0.812926 | 3.315485e-51 | -8.615850e-47 |
| Msa1213360 | Msa1213420 | 0.984049 | 1.917006e-159 | -8.615850e-47 |
| Msa1213420 | Msa1300490 | 0.807292 | 5.428280e-50 | -8.615850e-47 |
| Msa1213420 | Msa1303250 | 0.800914 | 1.152309e-48 | -8.615850e-47 |
| Msa1213420 | Msa1374550 | 0.847160 | 1.378873e-59 | -8.615850e-47 |
| Msa0487570 | Msa1213420 | 0.821323 | 4.292834e-53 | -8.615850e-47 |
| Msa0487630 | Msa1213420 | 0.828585 | 8.284715e-55 | -8.615850e-47 |
| Msa0574890 | Msa1213420 | 0.833920 | 4.041303e-56 | -8.615850e-47 |
| Msa0843220 | Msa1213420 | 0.820689 | 6.007086e-53 | -8.615850e-47 |
| Msa0880140 | Msa1213420 | 0.818753 | 1.662771e-52 | -8.615850e-47 |
| Msa0896540 | Msa1213420 | 0.808051 | 3.743909e-50 | -8.615850e-47 |
| Msa0896970 | Msa1213420 | 0.809907 | 1.500297e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213420 | MtrunA17_Chr4g0061861 | 92.683 | 246 | 18 | 0 | 1 | 246 | 4 | 249 | 5.91e-173 | 476 |
| Msa1213420 | MtrunA17_Chr4g0062071 | 89.024 | 246 | 24 | 1 | 1 | 246 | 1 | 243 | 2.69e-151 | 421 |
| Msa1213420 | MtrunA17_Chr4g0062041 | 81.081 | 37 | 7 | 0 | 200 | 236 | 1 | 37 | 9.70e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213420 | AT5G35520.1 | 41.393 | 244 | 125 | 6 | 1 | 239 | 1 | 231 | 6.87e-55 | 176 |
Find 63 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCATTGAGTTGTTTC+AGG | 0.169031 | 8_1:+73541220 | Msa1213420:CDS |
| TGAAATTGGGGAATCAAATT+TGG | 0.229151 | 8_1:+73539957 | Msa1213420:five_prime_UTR |
| TCTCGTAGTCTTTCTCAATT+TGG | 0.246763 | 8_1:+73542323 | Msa1213420:intron |
| ATTAATGAATTTAAATTATT+CGG | 0.253474 | 8_1:+73542286 | Msa1213420:three_prime_UTR |
| TCAAAAGGTTCAATCTGTTT+TGG | 0.255176 | 8_1:+73540394 | Msa1213420:CDS |
| CTGTACCTGTAATTGTTTAT+TGG | 0.268964 | 8_1:+73542226 | Msa1213420:three_prime_UTR |
| AAGGATTGACAACAATAAAA+TGG | 0.285180 | 8_1:+73541970 | Msa1213420:CDS |
| GGATCAAAAGCTCGCTGTTT+GGG | 0.327066 | 8_1:+73540415 | Msa1213420:CDS |
| TGAAGTGCCTGACAAGTTAC+AGG | 0.365071 | 8_1:+73542393 | Msa1213420:three_prime_UTR |
| GAACATACATTGAGAGTGTT+TGG | 0.366024 | 8_1:-73540488 | Msa1213390:intron |
| GACTACCAATAAACAATTAC+AGG | 0.370178 | 8_1:-73542231 | Msa1213390:intron |
| AATTGTTAGCCGAGTTTACT+AGG | 0.381196 | 8_1:+73542452 | Msa1213420:three_prime_UTR |
| TTTATTGGTAGTCTATTAGT+TGG | 0.385190 | 8_1:+73542241 | Msa1213420:three_prime_UTR |
| AGTGATAAGACCAGTCCAAC+TGG | 0.389779 | 8_1:-73542195 | Msa1213390:intron |
| GTTTGGCAATTGAAAACCTT+CGG | 0.391014 | 8_1:-73540471 | Msa1213390:intron |
| TGGATCAAAAGCTCGCTGTT+TGG | 0.391728 | 8_1:+73540414 | Msa1213420:CDS |
| CAGGAAAAGTGAAAGCAAAA+AGG | 0.393871 | 8_1:+73541951 | Msa1213420:CDS |
| GGAATCAAATTTGGCGGGAA+TGG | 0.406021 | 8_1:+73539966 | Msa1213420:exon |
| TCCTGGTTCTACTTCCGATC+TGG | 0.415979 | 8_1:+73540935 | Msa1213420:CDS |
| AAGAAAGAGGCACATGCATT+AGG | 0.422021 | 8_1:+73539928 | Msa1213420:five_prime_UTR |
| TTTGGCAATTGAAAACCTTC+GGG | 0.426623 | 8_1:-73540470 | Msa1213390:intron |
| TGTTGATTGCATTCGTCAAA+AGG | 0.440105 | 8_1:+73540379 | Msa1213420:CDS |
| CTCAGAACTTCGAATGAAGA+TGG | 0.446442 | 8_1:+73541898 | Msa1213420:CDS |
| TCCTGTCTCTTCAATCAAGT+TGG | 0.449465 | 8_1:-73541933 | Msa1213390:intron |
| AGTAGCTTCCGCATTGAGCT+TGG | 0.467482 | 8_1:-73540215 | Msa1213390:intron |
| CACAAAAGGTGAATATGTAA+AGG | 0.468134 | 8_1:+73542548 | Msa1213420:three_prime_UTR |
| GTAATGCCTCATTGATGTAC+TGG | 0.468420 | 8_1:-73541181 | Msa1213390:intron |
| TCTTGCATTGAGTTGTTTCA+GGG | 0.469644 | 8_1:+73541221 | Msa1213420:CDS |
| GCTAGAAGTTTGTAAGTGAT+AGG | 0.472429 | 8_1:+73542362 | Msa1213420:three_prime_UTR |
| ACAAAAGGTGAATATGTAAA+GGG | 0.486942 | 8_1:+73542549 | Msa1213420:three_prime_UTR |
| TCAAATTTGGCGGGAATGGA+AGG | 0.492575 | 8_1:+73539970 | Msa1213420:exon |
| TTTCATCAACCCAGTTGGAC+TGG | 0.493434 | 8_1:+73542185 | Msa1213420:three_prime_UTR |
| ATGAAACCTGTGTGAGATGT+TGG | 0.501041 | 8_1:-73540246 | Msa1213390:intron |
| TAGCCGAGTTTACTAGGTTG+TGG | 0.504832 | 8_1:+73542458 | Msa1213420:three_prime_UTR |
| GTATCTCCCTGTAACTTGTC+AGG | 0.509059 | 8_1:-73542400 | Msa1213390:intron |
| ACTTGTCAGGCACTTCACTT+TGG | 0.510637 | 8_1:-73542387 | Msa1213390:intron |
| AGCTTCCGCATTGAGCTTGG+TGG | 0.510752 | 8_1:-73540212 | Msa1213390:intron |
| AATTGGGGAATCAAATTTGG+CGG | 0.519703 | 8_1:+73539960 | Msa1213420:five_prime_UTR |
| TGAAACCTGTGTGAGATGTT+GGG | 0.524390 | 8_1:-73540245 | Msa1213390:intron |
| ATATGTAAAGGGAAAGTTGA+AGG | 0.528998 | 8_1:+73542560 | Msa1213420:three_prime_UTR |
| ATTGGGGAATCAAATTTGGC+GGG | 0.534605 | 8_1:+73539961 | Msa1213420:five_prime_UTR |
| ACTTCGTTGAAGAAGAGTTG+TGG | 0.543092 | 8_1:-73540045 | Msa1213390:intron |
| CATCTTCATTCGAAGTTCTG+AGG | 0.545490 | 8_1:-73541897 | Msa1213390:intron |
| TTCTCAATTTGGTTGTGCAA+AGG | 0.550792 | 8_1:+73542334 | Msa1213420:three_prime_UTR |
| CATTAATTTCAGTACAAGAG+AGG | 0.552215 | 8_1:-73542270 | Msa1213390:intron |
| AATGAGAATGATGTTGATCC+TGG | 0.559856 | 8_1:+73540918 | Msa1213420:CDS |
| TCCAGATCGGAAGTAGAACC+AGG | 0.560356 | 8_1:-73540936 | Msa1213390:intron |
| ACCAACTTGATTGAAGAGAC+AGG | 0.562272 | 8_1:+73541932 | Msa1213420:CDS |
| TATGTAAAGGGAAAGTTGAA+GGG | 0.566373 | 8_1:+73542561 | Msa1213420:three_prime_UTR |
| AACAGAGGAAGTGAAGAAAG+AGG | 0.576758 | 8_1:+73539915 | None:intergenic |
| TCAGAACTTCGAATGAAGAT+GGG | 0.584789 | 8_1:+73541899 | Msa1213420:CDS |
| AAGAAATTCATGCATTAGAG+AGG | 0.592371 | 8_1:+73541141 | Msa1213420:CDS |
| CTGCGCATCTAATTCCAGAT+CGG | 0.602596 | 8_1:-73540949 | Msa1213390:intron |
| TCTGCTATATATGCTTCCAA+AGG | 0.618473 | 8_1:+73541998 | Msa1213420:CDS |
| TTACCACAACCTAGTAAACT+CGG | 0.619292 | 8_1:-73542461 | Msa1213390:intron |
| GTGATAAGACCAGTCCAACT+GGG | 0.626319 | 8_1:-73542194 | Msa1213390:intron |
| TAATGCCTCATTGATGTACT+GGG | 0.649912 | 8_1:-73541180 | Msa1213390:intron |
| AGTAGAAATCGAAAGTATCG+AGG | 0.666017 | 8_1:-73540092 | Msa1213390:intron |
| GAAGTGCCTGACAAGTTACA+GGG | 0.669427 | 8_1:+73542394 | Msa1213420:three_prime_UTR |
| CAATGCCCAGTACATCAATG+AGG | 0.688342 | 8_1:+73541175 | Msa1213420:CDS |
| AAGATCCCAACATCTCACAC+AGG | 0.719465 | 8_1:+73540240 | Msa1213420:CDS |
| AGCATCCACCAAGCTCAATG+CGG | 0.721723 | 8_1:+73540207 | Msa1213420:CDS |
| ATGCGCAGTTAGAATCACTG+AGG | 0.771532 | 8_1:+73540964 | Msa1213420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTAATTAACTTTAATT+AGG | + | chr8_1:73540305-73540324 | Msa1213420:intron | 10.0% |
| !! | CTTAAGAAAAAATTATACAA+AGG | - | chr8_1:73540870-73540889 | Msa1213390:intron | 15.0% |
| !!! | TAAGATAAGATTTTTTTGAA+AGG | + | chr8_1:73541620-73541639 | Msa1213420:intron | 15.0% |
| !!! | AAGATAAGATTTTTTTGAAA+GGG | + | chr8_1:73541621-73541640 | Msa1213420:intron | 15.0% |
| !!! | AATAGTTTTATCACAATATA+GGG | - | chr8_1:73542489-73542508 | Msa1213390:intron | 15.0% |
| !!! | AAATAGTTTTATCACAATAT+AGG | - | chr8_1:73542490-73542509 | Msa1213390:intron | 15.0% |
| !!! | AAATTAAATCTTGTTGTTTC+AGG | + | chr8_1:73540182-73540201 | Msa1213420:intron | 20.0% |
| !!! | AATTAAATCTTGTTGTTTCA+GGG | + | chr8_1:73540183-73540202 | Msa1213420:intron | 20.0% |
| !! | TAAGCAATTTCTTTGAATAA+TGG | - | chr8_1:73540282-73540301 | Msa1213390:intron | 20.0% |
| !!! | CCTTTAATCTCTTTAAAAAA+AGG | - | chr8_1:73540641-73540660 | Msa1213390:intron | 20.0% |
| !!! | CCTTTTTTTAAAGAGATTAA+AGG | + | chr8_1:73540638-73540657 | Msa1213420:intron | 20.0% |
| !! | AATTGTATTGTTTGATATCT+TGG | - | chr8_1:73540716-73540735 | Msa1213390:intron | 20.0% |
| !! | AAAAATTATACAAAGGAACA+AGG | - | chr8_1:73540863-73540882 | Msa1213390:intron | 20.0% |
| !! | AATCAAATGAGAAACAAAAT+AGG | - | chr8_1:73541067-73541086 | Msa1213390:intron | 20.0% |
| !! | ATTTCTATTTAATCAATCCT+GGG | + | chr8_1:73541341-73541360 | Msa1213420:intron | 20.0% |
| !! | CAAAAGAACATTGAATTATT+TGG | + | chr8_1:73541444-73541463 | Msa1213420:intron | 20.0% |
| !! | AACATTGAATTATTTGGATA+CGG | + | chr8_1:73541450-73541469 | Msa1213420:intron | 20.0% |
| !!! | AGATAAGATTTTTTTGAAAG+GGG | + | chr8_1:73541622-73541641 | Msa1213420:intron | 20.0% |
| !! | AAATAATGTCAAAAATTTCC+TGG | + | chr8_1:73541726-73541745 | Msa1213420:intron | 20.0% |
| !!! | CATTAGGTTGTTTTGAAATT+GGG | + | chr8_1:73539944-73539963 | Msa1213420:five_prime_UTR | 25.0% |
| !!! | ATTAGGTTGTTTTGAAATTG+GGG | + | chr8_1:73539945-73539964 | Msa1213420:five_prime_UTR | 25.0% |
| !! | CAATTTCTTTGAATAATGGA+AGG | - | chr8_1:73540278-73540297 | Msa1213390:intron | 25.0% |
| ! | GAAGAGAAAAACAATGATAA+AGG | - | chr8_1:73540451-73540470 | Msa1213390:intron | 25.0% |
| ! | TTAAAATGCATGATATGATG+TGG | + | chr8_1:73540758-73540777 | Msa1213420:intron | 25.0% |
| !! | GTTTCTCATTTGATTTATCT+TGG | + | chr8_1:73541072-73541091 | Msa1213420:intron | 25.0% |
| ! | GATTTCTATTTAATCAATCC+TGG | + | chr8_1:73541340-73541359 | Msa1213420:intron | 25.0% |
| ! | TATAGTTAATGCATACAAAC+AGG | - | chr8_1:73541383-73541402 | Msa1213390:intron | 25.0% |
| !! | TATATTACTGACTGTGTAAT+TGG | - | chr8_1:73541490-73541509 | Msa1213390:intron | 25.0% |
| !!! | GATAAGATTTTTTTGAAAGG+GGG | + | chr8_1:73541623-73541642 | Msa1213420:intron | 25.0% |
| !! | GTTTCATTTCTCTTTTACTA+AGG | - | chr8_1:73541706-73541725 | Msa1213390:intron | 25.0% |
| ! | AAGGATTGACAACAATAAAA+TGG | + | chr8_1:73541970-73541989 | Msa1213420:CDS | 25.0% |
| !! | CAACATGAATTATTTTCACA+AGG | + | chr8_1:73542047-73542066 | Msa1213420:intron | 25.0% |
| ! | AAATGTTCAAATCAGAACTA+TGG | - | chr8_1:73542080-73542099 | Msa1213390:intron | 25.0% |
| !! | TTTATTGGTAGTCTATTAGT+TGG | + | chr8_1:73542241-73542260 | Msa1213420:three_prime_UTR | 25.0% |
| !! | ATTTCTTTTTACTGCACAAA+AGG | + | chr8_1:73542534-73542553 | Msa1213420:three_prime_UTR | 25.0% |
| ! | ACAAAAGGTGAATATGTAAA+GGG | + | chr8_1:73542549-73542568 | Msa1213420:three_prime_UTR | 25.0% |
| !!! | GCATTAGGTTGTTTTGAAAT+TGG | + | chr8_1:73539943-73539962 | Msa1213420:five_prime_UTR | 30.0% |
| TGAAATTGGGGAATCAAATT+TGG | + | chr8_1:73539957-73539976 | Msa1213420:five_prime_UTR | 30.0% | |
| !! | TGATTCTTTGTTTCTGTGAA+AGG | + | chr8_1:73540355-73540374 | Msa1213420:intron | 30.0% |
| !! | GATTCTTTGTTTCTGTGAAA+GGG | + | chr8_1:73540356-73540375 | Msa1213420:intron | 30.0% |
| ! | TCAAAAGGTTCAATCTGTTT+TGG | + | chr8_1:73540394-73540413 | Msa1213420:CDS | 30.0% |
| TTCGCTATTCACAAATATTG+CGG | + | chr8_1:73540523-73540542 | Msa1213420:intron | 30.0% | |
| ACATAAAAAACCCAGATATG+CGG | + | chr8_1:73540596-73540615 | Msa1213420:intron | 30.0% | |
| AAGAGATTAAAGGAAATGCA+TGG | + | chr8_1:73540648-73540667 | Msa1213420:intron | 30.0% | |
| !!! | AGGTTTTAGATAAGAGATGA+AGG | - | chr8_1:73540843-73540862 | Msa1213390:intron | 30.0% |
| ! | AAGAAAGTGTACTTTCTTTC+AGG | + | chr8_1:73540887-73540906 | Msa1213420:intron | 30.0% |
| ! | AGAAAGTGTACTTTCTTTCA+GGG | + | chr8_1:73540888-73540907 | Msa1213420:intron | 30.0% |
| AAGAAATTCATGCATTAGAG+AGG | + | chr8_1:73541141-73541160 | Msa1213420:CDS | 30.0% | |
| AACGTTAAAACATGAGCAAA+AGG | - | chr8_1:73541269-73541288 | Msa1213390:intron | 30.0% | |
| TTTGCAAATAATGAACATCC+AGG | + | chr8_1:73541533-73541552 | Msa1213420:intron | 30.0% | |
| TCTTTACATGTAGACATGAA+AGG | - | chr8_1:73541599-73541618 | Msa1213390:intron | 30.0% | |
| ! | AATGATATTCTGGTTACCTT+TGG | - | chr8_1:73542017-73542036 | Msa1213390:intron | 30.0% |
| CAGAAGAATGAATGATATTC+TGG | - | chr8_1:73542027-73542046 | Msa1213390:intron | 30.0% | |
| ATTTGAACATTTCTGTATGC+AGG | + | chr8_1:73542088-73542107 | Msa1213420:intron | 30.0% | |
| ! | ATATTTTTCATCAACCCAGT+TGG | + | chr8_1:73542180-73542199 | Msa1213420:three_prime_UTR | 30.0% |
| CTGTACCTGTAATTGTTTAT+TGG | + | chr8_1:73542226-73542245 | Msa1213420:three_prime_UTR | 30.0% | |
| GACTACCAATAAACAATTAC+AGG | - | chr8_1:73542234-73542253 | Msa1213390:intron | 30.0% | |
| CATTAATTTCAGTACAAGAG+AGG | - | chr8_1:73542273-73542292 | Msa1213390:intron | 30.0% | |
| CACAAAAGGTGAATATGTAA+AGG | + | chr8_1:73542548-73542567 | Msa1213420:three_prime_UTR | 30.0% | |
| ATATGTAAAGGGAAAGTTGA+AGG | + | chr8_1:73542560-73542579 | Msa1213420:three_prime_UTR | 30.0% | |
| TATGTAAAGGGAAAGTTGAA+GGG | + | chr8_1:73542561-73542580 | Msa1213420:three_prime_UTR | 30.0% | |
| AATTGGGGAATCAAATTTGG+CGG | + | chr8_1:73539960-73539979 | Msa1213420:five_prime_UTR | 35.0% | |
| !! | AGTAGAAATCGAAAGTATCG+AGG | - | chr8_1:73540095-73540114 | Msa1213390:intron | 35.0% |
| AAGAAGAAGAAGAAGCGAAA+GGG | - | chr8_1:73540131-73540150 | Msa1213390:intron | 35.0% | |
| AAAGAAGAAGAAGAAGCGAA+AGG | - | chr8_1:73540132-73540151 | Msa1213390:intron | 35.0% | |
| ! | TGTTGATTGCATTCGTCAAA+AGG | + | chr8_1:73540379-73540398 | Msa1213420:CDS | 35.0% |
| TTTGGCAATTGAAAACCTTC+GGG | - | chr8_1:73540473-73540492 | Msa1213390:intron | 35.0% | |
| GTTTGGCAATTGAAAACCTT+CGG | - | chr8_1:73540474-73540493 | Msa1213390:intron | 35.0% | |
| !! | GAACATACATTGAGAGTGTT+TGG | - | chr8_1:73540491-73540510 | Msa1213390:intron | 35.0% |
| ACAAATATTGCGGAGAATCA+TGG | + | chr8_1:73540533-73540552 | Msa1213420:intron | 35.0% | |
| CTGTAATGCAACTTTGATTG+AGG | - | chr8_1:73540568-73540587 | Msa1213390:intron | 35.0% | |
| ATATCTTGGCAAGTAGTGAT+TGG | - | chr8_1:73540702-73540721 | Msa1213390:intron | 35.0% | |
| AATGAGAATGATGTTGATCC+TGG | + | chr8_1:73540918-73540937 | Msa1213420:CDS | 35.0% | |
| AGTCTTCATTCTGTAGATAG+TGG | + | chr8_1:73541033-73541052 | Msa1213420:intron | 35.0% | |
| ! | TTGGTAATAAATGTGCTGTC+AGG | + | chr8_1:73541091-73541110 | Msa1213420:intron | 35.0% |
| TAATAAATGTGCTGTCAGGT+GGG | + | chr8_1:73541095-73541114 | Msa1213420:intron | 35.0% | |
| TAATGCCTCATTGATGTACT+GGG | - | chr8_1:73541183-73541202 | Msa1213390:intron | 35.0% | |
| ! | TCTTGCATTGAGTTGTTTCA+GGG | + | chr8_1:73541221-73541240 | Msa1213420:CDS | 35.0% |
| CATACAAACAGGTACCAAAA+TGG | - | chr8_1:73541372-73541391 | Msa1213390:intron | 35.0% | |
| AATCAAAAGACAGACTATCC+TGG | - | chr8_1:73541554-73541573 | Msa1213390:intron | 35.0% | |
| AGTATTAACATCCTGACCTA+TGG | - | chr8_1:73541678-73541697 | Msa1213390:intron | 35.0% | |
| TCAGAACTTCGAATGAAGAT+GGG | + | chr8_1:73541899-73541918 | Msa1213420:CDS | 35.0% | |
| CAGGAAAAGTGAAAGCAAAA+AGG | + | chr8_1:73541951-73541970 | Msa1213420:CDS | 35.0% | |
| TCTGCTATATATGCTTCCAA+AGG | + | chr8_1:73541998-73542017 | Msa1213420:CDS | 35.0% | |
| TCTCGTAGTCTTTCTCAATT+TGG | + | chr8_1:73542323-73542342 | Msa1213420:intron | 35.0% | |
| TTCTCAATTTGGTTGTGCAA+AGG | + | chr8_1:73542334-73542353 | Msa1213420:three_prime_UTR | 35.0% | |
| GCTAGAAGTTTGTAAGTGAT+AGG | + | chr8_1:73542362-73542381 | Msa1213420:three_prime_UTR | 35.0% | |
| AATTGTTAGCCGAGTTTACT+AGG | + | chr8_1:73542452-73542471 | Msa1213420:three_prime_UTR | 35.0% | |
| TTACCACAACCTAGTAAACT+CGG | - | chr8_1:73542464-73542483 | Msa1213390:intron | 35.0% | |
| ! | AAGAAAGAGGCACATGCATT+AGG | + | chr8_1:73539928-73539947 | Msa1213420:five_prime_UTR | 40.0% |
| ATTGGGGAATCAAATTTGGC+GGG | + | chr8_1:73539961-73539980 | Msa1213420:five_prime_UTR | 40.0% | |
| ACTTCGTTGAAGAAGAGTTG+TGG | - | chr8_1:73540048-73540067 | Msa1213390:intron | 40.0% | |
| AGAAGAAGAAGAAGCGAAAG+GGG | - | chr8_1:73540130-73540149 | Msa1213390:intron | 40.0% | |
| TGAAACCTGTGTGAGATGTT+GGG | - | chr8_1:73540248-73540267 | Msa1213390:intron | 40.0% | |
| ATGAAACCTGTGTGAGATGT+TGG | - | chr8_1:73540249-73540268 | Msa1213390:intron | 40.0% | |
| !! | CATTGTTTTTCTCTTCCCGA+AGG | + | chr8_1:73540455-73540474 | Msa1213420:CDS | 40.0% |
| ACTGAGGAAAAAACTAGCTG+AGG | + | chr8_1:73540980-73540999 | Msa1213420:CDS | 40.0% | |
| GTAATAAATGTGCTGTCAGG+TGG | + | chr8_1:73541094-73541113 | Msa1213420:intron | 40.0% | |
| AATAAATGTGCTGTCAGGTG+GGG | + | chr8_1:73541096-73541115 | Msa1213420:intron | 40.0% | |
| GTAATGCCTCATTGATGTAC+TGG | - | chr8_1:73541184-73541203 | Msa1213390:intron | 40.0% | |
| ! | CTCTTGCATTGAGTTGTTTC+AGG | + | chr8_1:73541220-73541239 | Msa1213420:CDS | 40.0% |
| !! | ATACTAGTTCTGAGTAGCAC+AGG | - | chr8_1:73541305-73541324 | Msa1213390:intron | 40.0% |
| ! | AATCCTGGGATTCTCCATTT+TGG | + | chr8_1:73541355-73541374 | Msa1213420:intron | 40.0% |
| CTGACCTATGGTACCTTTAT+TGG | - | chr8_1:73541666-73541685 | Msa1213390:intron | 40.0% | |
| !! | CAATAAAGGTACCATAGGTC+AGG | + | chr8_1:73541664-73541683 | Msa1213420:intron | 40.0% |
| CATCTTCATTCGAAGTTCTG+AGG | - | chr8_1:73541900-73541919 | Msa1213390:intron | 40.0% | |
| CTCAGAACTTCGAATGAAGA+TGG | + | chr8_1:73541898-73541917 | Msa1213420:CDS | 40.0% | |
| ACCAACTTGATTGAAGAGAC+AGG | + | chr8_1:73541932-73541951 | Msa1213420:CDS | 40.0% | |
| TCCTGTCTCTTCAATCAAGT+TGG | - | chr8_1:73541936-73541955 | Msa1213390:intron | 40.0% | |
| GAAAGACTACGAGATTCTTC+AGG | - | chr8_1:73542317-73542336 | Msa1213390:intron | 40.0% | |
| GGAATCAAATTTGGCGGGAA+TGG | + | chr8_1:73539966-73539985 | Msa1213420:exon | 45.0% | |
| TCAAATTTGGCGGGAATGGA+AGG | + | chr8_1:73539970-73539989 | Msa1213420:exon | 45.0% | |
| !! | AAGCGAAAGGGGTTAGTTAC+TGG | - | chr8_1:73540119-73540138 | Msa1213390:intron | 45.0% |
| AAGATCCCAACATCTCACAC+AGG | + | chr8_1:73540240-73540259 | Msa1213420:CDS | 45.0% | |
| TGGATCAAAAGCTCGCTGTT+TGG | + | chr8_1:73540414-73540433 | Msa1213420:CDS | 45.0% | |
| GGATCAAAAGCTCGCTGTTT+GGG | + | chr8_1:73540415-73540434 | Msa1213420:CDS | 45.0% | |
| AAGGTATGTGACCGCAATCT+AGG | - | chr8_1:73540622-73540641 | Msa1213390:intron | 45.0% | |
| CTGCGCATCTAATTCCAGAT+CGG | - | chr8_1:73540952-73540971 | Msa1213390:intron | 45.0% | |
| ATGCGCAGTTAGAATCACTG+AGG | + | chr8_1:73540964-73540983 | Msa1213420:CDS | 45.0% | |
| CAATGCCCAGTACATCAATG+AGG | + | chr8_1:73541175-73541194 | Msa1213420:CDS | 45.0% | |
| GTACCAAAATGGAGAATCCC+AGG | - | chr8_1:73541361-73541380 | Msa1213390:intron | 45.0% | |
| ! | TTGAAAGGGGGCCAACATTT+TGG | + | chr8_1:73541635-73541654 | Msa1213420:intron | 45.0% |
| ! | TGAAAGGGGGCCAACATTTT+GGG | + | chr8_1:73541636-73541655 | Msa1213420:intron | 45.0% |
| ! | TATTGGTGCCCCCAAAATGT+TGG | - | chr8_1:73541649-73541668 | Msa1213390:intron | 45.0% |
| !!! | CATTTTGGGGGCACCAATAA+AGG | + | chr8_1:73541650-73541669 | Msa1213420:intron | 45.0% |
| !! | GGCACCAATAAAGGTACCAT+AGG | + | chr8_1:73541659-73541678 | Msa1213420:intron | 45.0% |
| AGCTCTGCACTATTGCAAGT+AGG | + | chr8_1:73541749-73541768 | Msa1213420:intron | 45.0% | |
| GCAGTTGTCATGATCTCTAC+AGG | - | chr8_1:73541878-73541897 | Msa1213390:intron | 45.0% | |
| TTTCATCAACCCAGTTGGAC+TGG | + | chr8_1:73542185-73542204 | Msa1213420:three_prime_UTR | 45.0% | |
| GTGATAAGACCAGTCCAACT+GGG | - | chr8_1:73542197-73542216 | Msa1213390:intron | 45.0% | |
| AGTGATAAGACCAGTCCAAC+TGG | - | chr8_1:73542198-73542217 | Msa1213390:intron | 45.0% | |
| ACTTGTCAGGCACTTCACTT+TGG | - | chr8_1:73542390-73542409 | Msa1213390:intron | 45.0% | |
| ! | TGAAGTGCCTGACAAGTTAC+AGG | + | chr8_1:73542393-73542412 | Msa1213420:three_prime_UTR | 45.0% |
| ! | GAAGTGCCTGACAAGTTACA+GGG | + | chr8_1:73542394-73542413 | Msa1213420:three_prime_UTR | 45.0% |
| ! | GTATCTCCCTGTAACTTGTC+AGG | - | chr8_1:73542403-73542422 | Msa1213390:intron | 45.0% |
| TAGCCGAGTTTACTAGGTTG+TGG | + | chr8_1:73542458-73542477 | Msa1213420:three_prime_UTR | 45.0% | |
| !! | AATTTAATTAACTTTAATTA+GGG | + | chr8_1:73540306-73540325 | Msa1213420:intron | 5.0% |
| !! | ATTAATGAATTTAAATTATT+CGG | + | chr8_1:73542286-73542305 | Msa1213420:three_prime_UTR | 5.0% |
| !! | GAGCGACGCTGTTTTCGAAT+CGG | + | chr8_1:73540008-73540027 | Msa1213420:CDS | 50.0% |
| AGCATCCACCAAGCTCAATG+CGG | + | chr8_1:73540207-73540226 | Msa1213420:CDS | 50.0% | |
| AGTAGCTTCCGCATTGAGCT+TGG | - | chr8_1:73540218-73540237 | Msa1213390:intron | 50.0% | |
| GCAATCTAGGCCGCATATCT+GGG | - | chr8_1:73540609-73540628 | Msa1213390:intron | 50.0% | |
| CAGATATGCGGCCTAGATTG+CGG | + | chr8_1:73540608-73540627 | Msa1213420:intron | 50.0% | |
| !! | TCCTGGTTCTACTTCCGATC+TGG | + | chr8_1:73540935-73540954 | Msa1213420:CDS | 50.0% |
| TCCAGATCGGAAGTAGAACC+AGG | - | chr8_1:73540939-73540958 | Msa1213390:intron | 50.0% | |
| ! | GAAAGGGGGCCAACATTTTG+GGG | + | chr8_1:73541637-73541656 | Msa1213420:intron | 50.0% |
| ! | AAAGGGGGCCAACATTTTGG+GGG | + | chr8_1:73541638-73541657 | Msa1213420:intron | 50.0% |
| TTGCAATAGTGCAGAGCTCC+AGG | - | chr8_1:73541747-73541766 | Msa1213390:intron | 50.0% | |
| AGCTTCCGCATTGAGCTTGG+TGG | - | chr8_1:73540215-73540234 | Msa1213390:intron | 55.0% | |
| GCGGAGAATCATGGTCAACG+TGG | + | chr8_1:73540542-73540561 | Msa1213420:intron | 55.0% | |
| CGCAATCTAGGCCGCATATC+TGG | - | chr8_1:73540610-73540629 | Msa1213390:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 73539918 | 73542591 | 73539918 | ID=Msa1213420;Name=Msa1213420 |
| chr8_1 | mRNA | 73539918 | 73542591 | 73539918 | ID=Msa1213420-mRNA-1;Parent=Msa1213420;Name=Msa1213420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=67|1|1|1|0.75|0.66|9|375|246 |
| chr8_1 | exon | 73539918 | 73540118 | 73539918 | ID=Msa1213420-mRNA-1:exon:24983;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73540204 | 73540261 | 73540204 | ID=Msa1213420-mRNA-1:exon:24984;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73540377 | 73540502 | 73540377 | ID=Msa1213420-mRNA-1:exon:24985;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73540909 | 73541001 | 73540909 | ID=Msa1213420-mRNA-1:exon:24986;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73541113 | 73541242 | 73541113 | ID=Msa1213420-mRNA-1:exon:24987;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73541882 | 73542019 | 73541882 | ID=Msa1213420-mRNA-1:exon:24988;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73542110 | 73542308 | 73542110 | ID=Msa1213420-mRNA-1:exon:24989;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73542331 | 73542497 | 73542331 | ID=Msa1213420-mRNA-1:exon:24990;Parent=Msa1213420-mRNA-1 |
| chr8_1 | exon | 73542521 | 73542591 | 73542521 | ID=Msa1213420-mRNA-1:exon:24991;Parent=Msa1213420-mRNA-1 |
| chr8_1 | five_prime_UTR | 73539918 | 73539984 | 73539918 | ID=Msa1213420-mRNA-1:five_prime_utr;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73539985 | 73540118 | 73539985 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73540204 | 73540261 | 73540204 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73540377 | 73540502 | 73540377 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73540909 | 73541001 | 73540909 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73541113 | 73541242 | 73541113 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73541882 | 73542019 | 73541882 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | CDS | 73542110 | 73542171 | 73542110 | ID=Msa1213420-mRNA-1:cds;Parent=Msa1213420-mRNA-1 |
| chr8_1 | three_prime_UTR | 73542172 | 73542308 | 73542172 | ID=Msa1213420-mRNA-1:three_prime_utr;Parent=Msa1213420-mRNA-1 |
| chr8_1 | three_prime_UTR | 73542331 | 73542497 | 73542331 | ID=Msa1213420-mRNA-1:three_prime_utr;Parent=Msa1213420-mRNA-1 |
| chr8_1 | three_prime_UTR | 73542521 | 73542591 | 73542521 | ID=Msa1213420-mRNA-1:three_prime_utr;Parent=Msa1213420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
