Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233740 | KEH18439.1 | 58.678 | 121 | 20 | 3 | 1 | 96 | 1 | 116 | 8.26e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233740 | A0A072TLS0 | 58.678 | 121 | 20 | 3 | 1 | 96 | 1 | 116 | 3.94e-33 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa1233740 | 0.809337 | 1.989124e-50 | -8.615850e-47 |
| Msa0036150 | Msa1233740 | 0.844672 | 6.539533e-59 | -8.615850e-47 |
| Msa0053480 | Msa1233740 | 0.809899 | 1.506197e-50 | -8.615850e-47 |
| Msa0059880 | Msa1233740 | -0.804479 | 2.117638e-49 | -8.615850e-47 |
| Msa0641020 | Msa1233740 | 0.816539 | 5.248770e-52 | -8.615850e-47 |
| Msa0641030 | Msa1233740 | 0.822125 | 2.800017e-53 | -8.615850e-47 |
| Msa0657860 | Msa1233740 | 0.841322 | 5.099113e-58 | -8.615850e-47 |
| Msa0691140 | Msa1233740 | 0.826947 | 2.051114e-54 | -8.615850e-47 |
| Msa0739410 | Msa1233740 | 0.825589 | 4.317844e-54 | -8.615850e-47 |
| Msa0759380 | Msa1233740 | 0.831063 | 2.063928e-55 | -8.615850e-47 |
| Msa0815380 | Msa1233740 | 0.820437 | 6.862119e-53 | -8.615850e-47 |
| Msa1233740 | Msa1279870 | 0.801318 | 9.527086e-49 | -8.615850e-47 |
| Msa1233740 | Msa1307770 | 0.878566 | 2.531723e-69 | -8.615850e-47 |
| Msa1233740 | Msa1329820 | 0.808266 | 3.369246e-50 | -8.615850e-47 |
| Msa1233740 | Msa1413880 | 0.823868 | 1.098349e-53 | -8.615850e-47 |
| Msa1233740 | Msa1445250 | 0.833518 | 5.092954e-56 | -8.615850e-47 |
| Msa0365360 | Msa1233740 | 0.881096 | 3.188367e-70 | -8.615850e-47 |
| Msa0389050 | Msa1233740 | 0.810586 | 1.070752e-50 | -8.615850e-47 |
| Msa0413040 | Msa1233740 | 0.818637 | 1.767037e-52 | -8.615850e-47 |
| Msa0457370 | Msa1233740 | 0.848174 | 7.249599e-60 | -8.615850e-47 |
| Msa1008340 | Msa1233740 | 0.802733 | 4.877176e-49 | -8.615850e-47 |
| Msa1008960 | Msa1233740 | 0.801466 | 8.885938e-49 | -8.615850e-47 |
| Msa1033670 | Msa1233740 | 0.804112 | 2.525732e-49 | -8.615850e-47 |
| Msa1211280 | Msa1233740 | 0.817686 | 2.899456e-52 | -8.615850e-47 |
| Msa1211370 | Msa1233740 | 0.827059 | 1.928198e-54 | -8.615850e-47 |
| Msa0535020 | Msa1233740 | 0.812282 | 4.586537e-51 | -8.615850e-47 |
| Msa0535050 | Msa1233740 | 0.818261 | 2.149455e-52 | -8.615850e-47 |
| Msa0544930 | Msa1233740 | 0.809535 | 1.803334e-50 | -8.615850e-47 |
| Msa0566010 | Msa1233740 | 0.808166 | 3.539814e-50 | -8.615850e-47 |
| Msa0575540 | Msa1233740 | 0.800723 | 1.260562e-48 | -8.615850e-47 |
| Msa0855520 | Msa1233740 | 0.805044 | 1.613879e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAATAAGGTTAGTTATT+TGG | 0.107289 | 8_2:-10734129 | None:intergenic |
| CACAATAAGGTTAGTTATTT+GGG | 0.139676 | 8_2:-10734128 | None:intergenic |
| ATTGGATTGTTATCAATTCT+TGG | 0.282494 | 8_2:-10734160 | None:intergenic |
| CTTCTCCTGGACATAGTTTC+GGG | 0.330620 | 8_2:+10734449 | Msa1233740:CDS |
| GCTTCTCCTGGACATAGTTT+CGG | 0.332231 | 8_2:+10734448 | Msa1233740:CDS |
| ATGTCCAGGAGAAGCTGTTT+TGG | 0.365010 | 8_2:-10734440 | None:intergenic |
| TTGGTTTGTGCCTCACAATA+AGG | 0.374489 | 8_2:-10734141 | None:intergenic |
| TAACAAGTTTCTTGAGAAGT+TGG | 0.386760 | 8_2:-10734194 | None:intergenic |
| CTATGACAAGGAGACGAATA+AGG | 0.404170 | 8_2:+10735166 | Msa1233740:CDS |
| TCATCACTGTTGTCTTCGTC+TGG | 0.416477 | 8_2:+10734472 | Msa1233740:CDS |
| TTTCCTCAACAGAAGTAAGA+TGG | 0.459688 | 8_2:-10734095 | None:intergenic |
| AAGGTTAGTTATTTGGGGAG+TGG | 0.468986 | 8_2:-10734122 | None:intergenic |
| ATAGCCAAAACAGCTTCTCC+TGG | 0.492914 | 8_2:+10734436 | Msa1233740:intron |
| TCGTCTCCTTGTCATAGATC+CGG | 0.510051 | 8_2:-10735160 | None:intergenic |
| TAGCCATCTTACTTCTGTTG+AGG | 0.559009 | 8_2:+10734092 | Msa1233740:CDS |
| ACAATAAGGTTAGTTATTTG+GGG | 0.580656 | 8_2:-10734127 | None:intergenic |
| GATGACCCGAAACTATGTCC+AGG | 0.595604 | 8_2:-10734454 | None:intergenic |
| TCGGGAACAAGATGTTGCGC+CGG | 0.609502 | 8_2:+10735141 | Msa1233740:intron |
| TTGTCTTCGTCTGGAAGACA+TGG | 0.614761 | 8_2:+10734481 | Msa1233740:CDS |
| AAATAACTAACCTTATTGTG+AGG | 0.630050 | 8_2:+10734131 | Msa1233740:CDS |
| GGAGACGAATAAGGACATGA+TGG | 0.638826 | 8_2:+10735175 | Msa1233740:CDS |
| AAGGACATGATGGTGGCGCA+TGG | 0.647224 | 8_2:+10735185 | Msa1233740:CDS |
| GACGAATAAGGACATGATGG+TGG | 0.671825 | 8_2:+10735178 | Msa1233740:CDS |
| GTTGCGCCGGATCTATGACA+AGG | 0.706254 | 8_2:+10735154 | Msa1233740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCTTTTTCAATCAAAAA+AGG | + | chr8_2:10734898-10734917 | Msa1233740:intron | 15.0% |
| !!! | TAATCTTTTTCAATCAAAAA+AGG | + | chr8_2:10734898-10734917 | Msa1233740:intron | 15.0% |
| !!! | AACAAATTGTGTTTGAAATA+AGG | + | chr8_2:10734386-10734405 | Msa1233740:intron | 20.0% |
| !! | TAGACAATTAATAACTCAAA+TGG | - | chr8_2:10734779-10734798 | None:intergenic | 20.0% |
| !! | TCCTTCAACAAAAAAATAAA+AGG | + | chr8_2:10734807-10734826 | Msa1233740:intron | 20.0% |
| !! | ATTGTGTCAAAACTTATTAA+AGG | + | chr8_2:10735040-10735059 | Msa1233740:intron | 20.0% |
| !!! | AACAAATTGTGTTTGAAATA+AGG | + | chr8_2:10734386-10734405 | Msa1233740:intron | 20.0% |
| !! | TAGACAATTAATAACTCAAA+TGG | - | chr8_2:10734779-10734798 | None:intergenic | 20.0% |
| !! | TCCTTCAACAAAAAAATAAA+AGG | + | chr8_2:10734807-10734826 | Msa1233740:intron | 20.0% |
| !! | ATTGTGTCAAAACTTATTAA+AGG | + | chr8_2:10735040-10735059 | Msa1233740:intron | 20.0% |
| !! | ACAATAAGGTTAGTTATTTG+GGG | - | chr8_2:10734130-10734149 | None:intergenic | 25.0% |
| !! | CACAATAAGGTTAGTTATTT+GGG | - | chr8_2:10734131-10734150 | None:intergenic | 25.0% |
| !! | TCACAATAAGGTTAGTTATT+TGG | - | chr8_2:10734132-10734151 | None:intergenic | 25.0% |
| ! | AAATAACTAACCTTATTGTG+AGG | + | chr8_2:10734131-10734150 | Msa1233740:CDS | 25.0% |
| ! | ATTGGATTGTTATCAATTCT+TGG | - | chr8_2:10734163-10734182 | None:intergenic | 25.0% |
| !!! | TTGTTAGCTTTTTCAAAAAC+AGG | + | chr8_2:10734211-10734230 | Msa1233740:CDS | 25.0% |
| ! | TATACCCTAATGATTATCAT+AGG | - | chr8_2:10734414-10734433 | None:intergenic | 25.0% |
| !! | TTACTGTTGCTATTAAACTT+AGG | + | chr8_2:10734581-10734600 | Msa1233740:intron | 25.0% |
| ! | ATAACTCAAATGGATAATTC+TGG | - | chr8_2:10734769-10734788 | None:intergenic | 25.0% |
| !!! | GCCTTTTATTTTTTTGTTGA+AGG | - | chr8_2:10734811-10734830 | None:intergenic | 25.0% |
| ! | TGATTGAAAAAGATTAACCT+AGG | - | chr8_2:10734894-10734913 | None:intergenic | 25.0% |
| !! | AATATAAGAAGTCTAAAGCA+AGG | + | chr8_2:10735065-10735084 | Msa1233740:intron | 25.0% |
| ! | GTAAATTCTCATTTCAAAAG+TGG | + | chr8_2:10735097-10735116 | Msa1233740:intron | 25.0% |
| !! | ACAATAAGGTTAGTTATTTG+GGG | - | chr8_2:10734130-10734149 | None:intergenic | 25.0% |
| !! | CACAATAAGGTTAGTTATTT+GGG | - | chr8_2:10734131-10734150 | None:intergenic | 25.0% |
| !! | TCACAATAAGGTTAGTTATT+TGG | - | chr8_2:10734132-10734151 | None:intergenic | 25.0% |
| ! | AAATAACTAACCTTATTGTG+AGG | + | chr8_2:10734131-10734150 | Msa1233740:CDS | 25.0% |
| ! | ATTGGATTGTTATCAATTCT+TGG | - | chr8_2:10734163-10734182 | None:intergenic | 25.0% |
| !!! | TTGTTAGCTTTTTCAAAAAC+AGG | + | chr8_2:10734211-10734230 | Msa1233740:CDS | 25.0% |
| ! | TATACCCTAATGATTATCAT+AGG | - | chr8_2:10734414-10734433 | None:intergenic | 25.0% |
| !! | TTACTGTTGCTATTAAACTT+AGG | + | chr8_2:10734581-10734600 | Msa1233740:intron | 25.0% |
| ! | ATAACTCAAATGGATAATTC+TGG | - | chr8_2:10734769-10734788 | None:intergenic | 25.0% |
| !!! | GCCTTTTATTTTTTTGTTGA+AGG | - | chr8_2:10734811-10734830 | None:intergenic | 25.0% |
| ! | TGATTGAAAAAGATTAACCT+AGG | - | chr8_2:10734894-10734913 | None:intergenic | 25.0% |
| !! | AATATAAGAAGTCTAAAGCA+AGG | + | chr8_2:10735065-10735084 | Msa1233740:intron | 25.0% |
| ! | GTAAATTCTCATTTCAAAAG+TGG | + | chr8_2:10735097-10735116 | Msa1233740:intron | 25.0% |
| !!! | AAGTTGGTTTTTACTTGGAT+TGG | - | chr8_2:10734181-10734200 | None:intergenic | 30.0% |
| !!! | TTGAGAAGTTGGTTTTTACT+TGG | - | chr8_2:10734186-10734205 | None:intergenic | 30.0% |
| TAACAAGTTTCTTGAGAAGT+TGG | - | chr8_2:10734197-10734216 | None:intergenic | 30.0% | |
| AGGAACCTATGATAATCATT+AGG | + | chr8_2:10734406-10734425 | Msa1233740:intron | 30.0% | |
| GGAACCTATGATAATCATTA+GGG | + | chr8_2:10734407-10734426 | Msa1233740:intron | 30.0% | |
| CTCAACAATGACATTTCAAA+TGG | - | chr8_2:10734560-10734579 | None:intergenic | 30.0% | |
| AATGGTTAAACTACATGAGA+GGG | - | chr8_2:10734609-10734628 | None:intergenic | 30.0% | |
| ATGAACAAGACAAGAAAGAA+TGG | - | chr8_2:10734627-10734646 | None:intergenic | 30.0% | |
| AGTACATTGTAGCAAAATCA+GGG | - | chr8_2:10734663-10734682 | None:intergenic | 30.0% | |
| AAGTACATTGTAGCAAAATC+AGG | - | chr8_2:10734664-10734683 | None:intergenic | 30.0% | |
| TTGAAAAAGATTAACCTAGG+TGG | - | chr8_2:10734891-10734910 | None:intergenic | 30.0% | |
| CACAATTGTTGGATGAAAAT+TGG | - | chr8_2:10734957-10734976 | None:intergenic | 30.0% | |
| TTTCATCCAACAATTGTGAT+TGG | + | chr8_2:10734959-10734978 | Msa1233740:intron | 30.0% | |
| AGTTAACCAATCACAATTGT+TGG | - | chr8_2:10734968-10734987 | None:intergenic | 30.0% | |
| ATTTCAAAAGTGGTAGAGAA+TGG | + | chr8_2:10735107-10735126 | Msa1233740:intron | 30.0% | |
| !!! | AAGTTGGTTTTTACTTGGAT+TGG | - | chr8_2:10734181-10734200 | None:intergenic | 30.0% |
| !!! | TTGAGAAGTTGGTTTTTACT+TGG | - | chr8_2:10734186-10734205 | None:intergenic | 30.0% |
| TAACAAGTTTCTTGAGAAGT+TGG | - | chr8_2:10734197-10734216 | None:intergenic | 30.0% | |
| AGGAACCTATGATAATCATT+AGG | + | chr8_2:10734406-10734425 | Msa1233740:intron | 30.0% | |
| GGAACCTATGATAATCATTA+GGG | + | chr8_2:10734407-10734426 | Msa1233740:intron | 30.0% | |
| CTCAACAATGACATTTCAAA+TGG | - | chr8_2:10734560-10734579 | None:intergenic | 30.0% | |
| AATGGTTAAACTACATGAGA+GGG | - | chr8_2:10734609-10734628 | None:intergenic | 30.0% | |
| ATGAACAAGACAAGAAAGAA+TGG | - | chr8_2:10734627-10734646 | None:intergenic | 30.0% | |
| AGTACATTGTAGCAAAATCA+GGG | - | chr8_2:10734663-10734682 | None:intergenic | 30.0% | |
| AAGTACATTGTAGCAAAATC+AGG | - | chr8_2:10734664-10734683 | None:intergenic | 30.0% | |
| TTGAAAAAGATTAACCTAGG+TGG | - | chr8_2:10734891-10734910 | None:intergenic | 30.0% | |
| CACAATTGTTGGATGAAAAT+TGG | - | chr8_2:10734957-10734976 | None:intergenic | 30.0% | |
| TTTCATCCAACAATTGTGAT+TGG | + | chr8_2:10734959-10734978 | Msa1233740:intron | 30.0% | |
| AGTTAACCAATCACAATTGT+TGG | - | chr8_2:10734968-10734987 | None:intergenic | 30.0% | |
| ATTTCAAAAGTGGTAGAGAA+TGG | + | chr8_2:10735107-10735126 | Msa1233740:intron | 30.0% | |
| TTTCCTCAACAGAAGTAAGA+TGG | - | chr8_2:10734098-10734117 | None:intergenic | 35.0% | |
| !!! | GCTTTTTCAAAAACAGGATC+TGG | + | chr8_2:10734217-10734236 | Msa1233740:CDS | 35.0% |
| CTATGTGGATGTTAGCAATA+GGG | - | chr8_2:10734303-10734322 | None:intergenic | 35.0% | |
| !! | TCGTTTCCTGTTTCTTTTAC+TGG | + | chr8_2:10734508-10734527 | Msa1233740:intron | 35.0% |
| GTTAGACCAGTAAAAGAAAC+AGG | - | chr8_2:10734517-10734536 | None:intergenic | 35.0% | |
| GAATGGTTAAACTACATGAG+AGG | - | chr8_2:10734610-10734629 | None:intergenic | 35.0% | |
| ! | TGTCTTGTTCATTCATCCAA+AGG | + | chr8_2:10734635-10734654 | Msa1233740:intron | 35.0% |
| ATAGCACTTGAAGAAGAAGT+TGG | - | chr8_2:10734733-10734752 | None:intergenic | 35.0% | |
| AACTTCTTCTTCAAGTGCTA+TGG | + | chr8_2:10734732-10734751 | Msa1233740:intron | 35.0% | |
| TTAAATACTGCTAACCACCT+AGG | + | chr8_2:10734874-10734893 | Msa1233740:intron | 35.0% | |
| TTGGATGAAAATTGGACTGT+TGG | - | chr8_2:10734949-10734968 | None:intergenic | 35.0% | |
| GTTAACTGCATGCAAGTTTA+GGG | + | chr8_2:10734981-10735000 | Msa1233740:intron | 35.0% | |
| TTTCCTCAACAGAAGTAAGA+TGG | - | chr8_2:10734098-10734117 | None:intergenic | 35.0% | |
| !!! | GCTTTTTCAAAAACAGGATC+TGG | + | chr8_2:10734217-10734236 | Msa1233740:CDS | 35.0% |
| CTATGTGGATGTTAGCAATA+GGG | - | chr8_2:10734303-10734322 | None:intergenic | 35.0% | |
| !! | TCGTTTCCTGTTTCTTTTAC+TGG | + | chr8_2:10734508-10734527 | Msa1233740:intron | 35.0% |
| GTTAGACCAGTAAAAGAAAC+AGG | - | chr8_2:10734517-10734536 | None:intergenic | 35.0% | |
| GAATGGTTAAACTACATGAG+AGG | - | chr8_2:10734610-10734629 | None:intergenic | 35.0% | |
| ! | TGTCTTGTTCATTCATCCAA+AGG | + | chr8_2:10734635-10734654 | Msa1233740:intron | 35.0% |
| ATAGCACTTGAAGAAGAAGT+TGG | - | chr8_2:10734733-10734752 | None:intergenic | 35.0% | |
| AACTTCTTCTTCAAGTGCTA+TGG | + | chr8_2:10734732-10734751 | Msa1233740:intron | 35.0% | |
| TTAAATACTGCTAACCACCT+AGG | + | chr8_2:10734874-10734893 | Msa1233740:intron | 35.0% | |
| TTGGATGAAAATTGGACTGT+TGG | - | chr8_2:10734949-10734968 | None:intergenic | 35.0% | |
| GTTAACTGCATGCAAGTTTA+GGG | + | chr8_2:10734981-10735000 | Msa1233740:intron | 35.0% | |
| TAGCCATCTTACTTCTGTTG+AGG | + | chr8_2:10734092-10734111 | Msa1233740:CDS | 40.0% | |
| ! | AAGGTTAGTTATTTGGGGAG+TGG | - | chr8_2:10734125-10734144 | None:intergenic | 40.0% |
| !! | TTGGTTTGTGCCTCACAATA+AGG | - | chr8_2:10734144-10734163 | None:intergenic | 40.0% |
| CCTATGTGGATGTTAGCAAT+AGG | - | chr8_2:10734304-10734323 | None:intergenic | 40.0% | |
| CCTATTGCTAACATCCACAT+AGG | + | chr8_2:10734301-10734320 | Msa1233740:intron | 40.0% | |
| TGCATCATAGGTTACCTATG+TGG | - | chr8_2:10734318-10734337 | None:intergenic | 40.0% | |
| GTGGAATTCGTTTGCATCAT+AGG | - | chr8_2:10734330-10734349 | None:intergenic | 40.0% | |
| ATTTGTCTCTTGCTTGTGAG+TGG | - | chr8_2:10734349-10734368 | None:intergenic | 40.0% | |
| CAAATGGCATTTAATCCACC+TGG | - | chr8_2:10734544-10734563 | None:intergenic | 40.0% | |
| CAACAAGCTCAAAGAAAGGT+TGG | - | chr8_2:10734690-10734709 | None:intergenic | 40.0% | |
| !! | CCTTTCTTTGAGCTTGTTGT+CGG | + | chr8_2:10734691-10734710 | Msa1233740:intron | 40.0% |
| ! | ACTTGAAGAAGAAGTTGGTC+AGG | - | chr8_2:10734728-10734747 | None:intergenic | 40.0% |
| ! | TCAAGTGCTATGGATTGTGT+TGG | + | chr8_2:10734742-10734761 | Msa1233740:intron | 40.0% |
| GGTTAACTGCATGCAAGTTT+AGG | + | chr8_2:10734980-10734999 | Msa1233740:intron | 40.0% | |
| CACAATTGTTGCATGCACTT+AGG | - | chr8_2:10735026-10735045 | None:intergenic | 40.0% | |
| GAGAATGGTTCATTGCTTGT+CGG | + | chr8_2:10735122-10735141 | Msa1233740:intron | 40.0% | |
| AGAATGGTTCATTGCTTGTC+GGG | + | chr8_2:10735123-10735142 | Msa1233740:intron | 40.0% | |
| CTATGACAAGGAGACGAATA+AGG | + | chr8_2:10735166-10735185 | Msa1233740:CDS | 40.0% | |
| TAGCCATCTTACTTCTGTTG+AGG | + | chr8_2:10734092-10734111 | Msa1233740:CDS | 40.0% | |
| ! | AAGGTTAGTTATTTGGGGAG+TGG | - | chr8_2:10734125-10734144 | None:intergenic | 40.0% |
| !! | TTGGTTTGTGCCTCACAATA+AGG | - | chr8_2:10734144-10734163 | None:intergenic | 40.0% |
| CCTATGTGGATGTTAGCAAT+AGG | - | chr8_2:10734304-10734323 | None:intergenic | 40.0% | |
| CCTATTGCTAACATCCACAT+AGG | + | chr8_2:10734301-10734320 | Msa1233740:intron | 40.0% | |
| TGCATCATAGGTTACCTATG+TGG | - | chr8_2:10734318-10734337 | None:intergenic | 40.0% | |
| GTGGAATTCGTTTGCATCAT+AGG | - | chr8_2:10734330-10734349 | None:intergenic | 40.0% | |
| ATTTGTCTCTTGCTTGTGAG+TGG | - | chr8_2:10734349-10734368 | None:intergenic | 40.0% | |
| CAAATGGCATTTAATCCACC+TGG | - | chr8_2:10734544-10734563 | None:intergenic | 40.0% | |
| CAACAAGCTCAAAGAAAGGT+TGG | - | chr8_2:10734690-10734709 | None:intergenic | 40.0% | |
| !! | CCTTTCTTTGAGCTTGTTGT+CGG | + | chr8_2:10734691-10734710 | Msa1233740:intron | 40.0% |
| ! | ACTTGAAGAAGAAGTTGGTC+AGG | - | chr8_2:10734728-10734747 | None:intergenic | 40.0% |
| ! | TCAAGTGCTATGGATTGTGT+TGG | + | chr8_2:10734742-10734761 | Msa1233740:intron | 40.0% |
| GGTTAACTGCATGCAAGTTT+AGG | + | chr8_2:10734980-10734999 | Msa1233740:intron | 40.0% | |
| CACAATTGTTGCATGCACTT+AGG | - | chr8_2:10735026-10735045 | None:intergenic | 40.0% | |
| GAGAATGGTTCATTGCTTGT+CGG | + | chr8_2:10735122-10735141 | Msa1233740:intron | 40.0% | |
| AGAATGGTTCATTGCTTGTC+GGG | + | chr8_2:10735123-10735142 | Msa1233740:intron | 40.0% | |
| CTATGACAAGGAGACGAATA+AGG | + | chr8_2:10735166-10735185 | Msa1233740:CDS | 40.0% | |
| ATAGCCAAAACAGCTTCTCC+TGG | + | chr8_2:10734436-10734455 | Msa1233740:intron | 45.0% | |
| ! | ATGTCCAGGAGAAGCTGTTT+TGG | - | chr8_2:10734443-10734462 | None:intergenic | 45.0% |
| GCTTCTCCTGGACATAGTTT+CGG | + | chr8_2:10734448-10734467 | Msa1233740:CDS | 45.0% | |
| CTTCTCCTGGACATAGTTTC+GGG | + | chr8_2:10734449-10734468 | Msa1233740:CDS | 45.0% | |
| TCATCACTGTTGTCTTCGTC+TGG | + | chr8_2:10734472-10734491 | Msa1233740:CDS | 45.0% | |
| TTGTCTTCGTCTGGAAGACA+TGG | + | chr8_2:10734481-10734500 | Msa1233740:CDS | 45.0% | |
| ! | TTTACTGGTCTAACACCACC+AGG | + | chr8_2:10734523-10734542 | Msa1233740:intron | 45.0% |
| ATGGCATTTAATCCACCTGG+TGG | - | chr8_2:10734541-10734560 | None:intergenic | 45.0% | |
| ! | TAGCAAAATCAGGGCACCTT+TGG | - | chr8_2:10734654-10734673 | None:intergenic | 45.0% |
| CCGACAACAAGCTCAAAGAA+AGG | - | chr8_2:10734694-10734713 | None:intergenic | 45.0% | |
| ! | GTCTAAAGCAAGGTCTTGAG+TGG | + | chr8_2:10735075-10735094 | Msa1233740:intron | 45.0% |
| TCGTCTCCTTGTCATAGATC+CGG | - | chr8_2:10735163-10735182 | None:intergenic | 45.0% | |
| GGAGACGAATAAGGACATGA+TGG | + | chr8_2:10735175-10735194 | Msa1233740:CDS | 45.0% | |
| GACGAATAAGGACATGATGG+TGG | + | chr8_2:10735178-10735197 | Msa1233740:CDS | 45.0% | |
| ATAGCCAAAACAGCTTCTCC+TGG | + | chr8_2:10734436-10734455 | Msa1233740:intron | 45.0% | |
| ! | ATGTCCAGGAGAAGCTGTTT+TGG | - | chr8_2:10734443-10734462 | None:intergenic | 45.0% |
| GCTTCTCCTGGACATAGTTT+CGG | + | chr8_2:10734448-10734467 | Msa1233740:CDS | 45.0% | |
| CTTCTCCTGGACATAGTTTC+GGG | + | chr8_2:10734449-10734468 | Msa1233740:CDS | 45.0% | |
| TCATCACTGTTGTCTTCGTC+TGG | + | chr8_2:10734472-10734491 | Msa1233740:CDS | 45.0% | |
| TTGTCTTCGTCTGGAAGACA+TGG | + | chr8_2:10734481-10734500 | Msa1233740:CDS | 45.0% | |
| ! | TTTACTGGTCTAACACCACC+AGG | + | chr8_2:10734523-10734542 | Msa1233740:intron | 45.0% |
| ATGGCATTTAATCCACCTGG+TGG | - | chr8_2:10734541-10734560 | None:intergenic | 45.0% | |
| ! | TAGCAAAATCAGGGCACCTT+TGG | - | chr8_2:10734654-10734673 | None:intergenic | 45.0% |
| CCGACAACAAGCTCAAAGAA+AGG | - | chr8_2:10734694-10734713 | None:intergenic | 45.0% | |
| ! | GTCTAAAGCAAGGTCTTGAG+TGG | + | chr8_2:10735075-10735094 | Msa1233740:intron | 45.0% |
| TCGTCTCCTTGTCATAGATC+CGG | - | chr8_2:10735163-10735182 | None:intergenic | 45.0% | |
| GGAGACGAATAAGGACATGA+TGG | + | chr8_2:10735175-10735194 | Msa1233740:CDS | 45.0% | |
| GACGAATAAGGACATGATGG+TGG | + | chr8_2:10735178-10735197 | Msa1233740:CDS | 45.0% | |
| GATGACCCGAAACTATGTCC+AGG | - | chr8_2:10734457-10734476 | None:intergenic | 50.0% | |
| GATGACCCGAAACTATGTCC+AGG | - | chr8_2:10734457-10734476 | None:intergenic | 50.0% | |
| ! | ACTGGTCTAACACCACCAGG+TGG | + | chr8_2:10734526-10734545 | Msa1233740:intron | 55.0% |
| TCGGGAACAAGATGTTGCGC+CGG | + | chr8_2:10735141-10735160 | Msa1233740:intron | 55.0% | |
| GTTGCGCCGGATCTATGACA+AGG | + | chr8_2:10735154-10735173 | Msa1233740:CDS | 55.0% | |
| !! | AAGGACATGATGGTGGCGCA+TGG | + | chr8_2:10735185-10735204 | Msa1233740:CDS | 55.0% |
| ! | ACTGGTCTAACACCACCAGG+TGG | + | chr8_2:10734526-10734545 | Msa1233740:intron | 55.0% |
| TCGGGAACAAGATGTTGCGC+CGG | + | chr8_2:10735141-10735160 | Msa1233740:intron | 55.0% | |
| GTTGCGCCGGATCTATGACA+AGG | + | chr8_2:10735154-10735173 | Msa1233740:CDS | 55.0% | |
| !! | AAGGACATGATGGTGGCGCA+TGG | + | chr8_2:10735185-10735204 | Msa1233740:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 10734091 | 10735208 | 10734091 | ID=Msa1233740;Name=Msa1233740 |
| chr8_2 | mRNA | 10734091 | 10735208 | 10734091 | ID=Msa1233740-mRNA-1;Parent=Msa1233740;Name=Msa1233740-mRNA-1;_AED=0.15;_eAED=0.26;_QI=0|0|0|1|0|0|3|0|96 |
| chr8_2 | exon | 10734091 | 10734258 | 10734091 | ID=Msa1233740-mRNA-1:exon:4203;Parent=Msa1233740-mRNA-1 |
| chr8_2 | exon | 10734440 | 10734502 | 10734440 | ID=Msa1233740-mRNA-1:exon:4204;Parent=Msa1233740-mRNA-1 |
| chr8_2 | exon | 10735152 | 10735208 | 10735152 | ID=Msa1233740-mRNA-1:exon:4205;Parent=Msa1233740-mRNA-1 |
| chr8_2 | CDS | 10734091 | 10734258 | 10734091 | ID=Msa1233740-mRNA-1:cds;Parent=Msa1233740-mRNA-1 |
| chr8_2 | CDS | 10734440 | 10734502 | 10734440 | ID=Msa1233740-mRNA-1:cds;Parent=Msa1233740-mRNA-1 |
| chr8_2 | CDS | 10735152 | 10735208 | 10735152 | ID=Msa1233740-mRNA-1:cds;Parent=Msa1233740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
