AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211280 MtrunA17_Chr4g0059971 97.822 597 13 0 1 597 1 597 0.0 1206
Msa1211280 MtrunA17_Chr4g0059991 69.244 569 173 2 18 584 5 573 0.0 853
Msa1211280 MtrunA17_Chr4g0059981 68.213 582 183 2 10 590 7 587 0.0 840
Msa1211280 MtrunA17_Chr5g0415791 48.527 577 275 8 14 584 17 577 0.0 552
Msa1211280 MtrunA17_Chr8g0362781 41.075 577 325 7 17 584 11 581 1.16e-157 464
Msa1211280 MtrunA17_Chr8g0362801 46.908 469 235 6 122 584 1 461 5.66e-150 441
Msa1211280 MtrunA17_Chr4g0060001 41.058 548 306 7 39 581 34 569 1.47e-147 439
Msa1211280 MtrunA17_Chr8g0390331 39.071 581 338 8 18 596 2 568 3.07e-140 419
Msa1211280 MtrunA17_Chr7g0255621 37.847 576 341 9 15 584 1 565 6.07e-138 414
Msa1211280 MtrunA17_Chr7g0240281 39.362 564 322 7 39 593 29 581 1.54e-134 405
Msa1211280 MtrunA17_Chr7g0255601 38.462 585 330 14 15 584 3 572 5.09e-134 404
Msa1211280 MtrunA17_Chr7g0240271 37.063 572 337 8 16 579 9 565 5.84e-134 404
Msa1211280 MtrunA17_Chr5g0422881 36.678 578 345 7 10 585 7 565 2.77e-133 402
Msa1211280 MtrunA17_Chr7g0241741 37.500 552 332 7 40 590 28 567 2.00e-130 394
Msa1211280 MtrunA17_Chr2g0331511 37.262 577 337 8 15 581 1 562 2.05e-130 396
Msa1211280 MtrunA17_Chr3g0104011 35.945 587 351 7 7 589 3 568 2.19e-130 394
Msa1211280 MtrunA17_Chr4g0005901 36.007 586 338 9 6 585 18 572 3.83e-129 390
Msa1211280 MtrunA17_Chr8g0375311 36.380 547 338 5 40 585 46 583 1.61e-128 389
Msa1211280 MtrunA17_Chr8g0375291 36.189 572 345 7 16 576 12 574 2.37e-128 389
Msa1211280 MtrunA17_Chr4g0003761 35.924 579 358 10 18 593 13 581 7.93e-128 388
Msa1211280 MtrunA17_Chr2g0331521 37.766 564 321 10 30 581 18 563 1.12e-127 387
Msa1211280 MtrunA17_Chr8g0375351 35.800 581 359 8 5 582 11 580 1.45e-126 384
Msa1211280 MtrunA17_Chr1g0147631 38.686 548 318 9 39 581 30 564 1.49e-126 384
Msa1211280 MtrunA17_Chr1g0157601 36.106 565 347 8 18 581 2 553 1.43e-125 381
Msa1211280 MtrunA17_Chr7g0255611 34.524 588 362 10 3 584 4 574 4.85e-124 378
Msa1211280 MtrunA17_Chr8g0375321 35.478 575 347 8 16 582 19 577 2.51e-123 376
Msa1211280 MtrunA17_Chr8g0375341 34.412 587 365 6 5 585 11 583 2.65e-122 373
Msa1211280 MtrunA17_Chr3g0142091 36.116 551 331 5 39 587 31 562 1.74e-121 371
Msa1211280 MtrunA17_Chr2g0331481 36.991 565 344 8 20 581 11 566 2.13e-119 367
Msa1211280 MtrunA17_Chr5g0415841 39.440 464 269 8 125 584 4 459 6.99e-119 360
Msa1211280 MtrunA17_Chr8g0375331 35.456 581 351 8 13 585 3 567 1.24e-118 363
Msa1211280 MtrunA17_Chr1g0157611 36.396 566 343 9 21 581 1 554 3.03e-118 362
Msa1211280 MtrunA17_Chr2g0331471 36.720 561 343 8 24 581 78 629 6.49e-118 365
Msa1211280 MtrunA17_Chr2g0331461 37.876 565 339 8 20 581 11 566 1.29e-117 363
Msa1211280 MtrunA17_Chr8g0375361 36.131 548 338 7 40 585 45 582 3.80e-117 360
Msa1211280 MtrunA17_Chr3g0142101 33.910 578 352 11 17 585 11 567 1.18e-115 356
Msa1211280 MtrunA17_Chr1g0177591 34.880 582 347 12 3 581 12 564 4.96e-113 349
Msa1211280 MtrunA17_Chr5g0399061 35.209 551 344 7 39 585 32 573 2.08e-112 348
Msa1211280 MtrunA17_Chr1g0157621 36.053 527 327 6 55 581 1 517 1.46e-111 345
Msa1211280 MtrunA17_Chr4g0008651 33.504 585 356 10 18 585 2 570 3.87e-110 342
Msa1211280 MtrunA17_Chr7g0261811 32.881 590 365 10 14 590 2 573 3.40e-109 340
Msa1211280 MtrunA17_Chr5g0400371 32.765 586 378 9 3 582 81 656 2.40e-108 340
Msa1211280 MtrunA17_Chr7g0240211 37.581 463 269 7 125 579 4 454 5.30e-107 330
Msa1211280 MtrunA17_Chr7g0240181 37.581 463 269 7 125 579 4 454 5.59e-107 330
Msa1211280 MtrunA17_Chr7g0235521 37.581 463 269 7 125 579 4 454 9.66e-107 330
Msa1211280 MtrunA17_Chr7g0261771 33.571 560 352 8 40 594 37 581 2.31e-106 333
Msa1211280 MtrunA17_Chr3g0112671 33.276 586 360 10 3 584 2 560 7.32e-106 330
Msa1211280 MtrunA17_Chr7g0240131 37.365 463 270 7 125 579 4 454 1.92e-105 326
Msa1211280 MtrunA17_Chr5g0439381 34.087 575 341 7 23 584 7 556 4.59e-105 329
Msa1211280 MtrunA17_Chr3g0112611 34.549 576 348 9 25 584 7 569 5.83e-105 328
Msa1211280 MtrunA17_Chr5g0399071 33.333 552 353 6 39 585 30 571 1.46e-104 327
Msa1211280 MtrunA17_Chr7g0240381 32.594 586 351 10 15 584 1 558 1.43e-103 325
Msa1211280 MtrunA17_Chr7g0261881 31.987 594 365 11 14 590 2 573 1.38e-102 323
Msa1211280 MtrunA17_Chr4g0014841 34.854 548 323 10 40 585 35 550 4.01e-102 320
Msa1211280 MtrunA17_Chr3g0114501 34.120 551 348 9 40 588 28 565 4.56e-101 318
Msa1211280 MtrunA17_Chr3g0077151 33.696 552 321 10 39 585 33 544 1.71e-100 315
Msa1211280 MtrunA17_Chr4g0014801 34.458 563 333 10 28 585 21 552 3.08e-100 315
Msa1211280 MtrunA17_Chr4g0056431 34.664 551 350 6 39 585 30 574 5.57e-100 316
Msa1211280 MtrunA17_Chr4g0014781 35.584 548 321 10 40 585 35 552 6.03e-100 315
Msa1211280 MtrunA17_Chr1g0213711 32.865 569 362 7 17 582 4 555 9.48e-100 315
Msa1211280 MtrunA17_Chr4g0063591 36.166 553 330 11 39 586 27 561 3.14e-99 313
Msa1211280 MtrunA17_Chr1g0166791 32.762 583 366 11 18 590 4 570 3.26e-99 314
Msa1211280 MtrunA17_Chr7g0214731 34.392 567 331 13 39 584 66 612 6.30e-99 314
Msa1211280 MtrunA17_Chr4g0014791 36.066 549 315 11 40 585 35 550 1.55e-98 311
Msa1211280 MtrunA17_Chr7g0240151 36.069 463 258 8 125 579 4 436 1.11e-97 305
Msa1211280 MtrunA17_Chr7g0214461 30.623 578 384 6 21 596 63 625 2.71e-97 310
Msa1211280 MtrunA17_Chr1g0187241 32.269 595 368 10 7 590 2 572 9.09e-97 307
Msa1211280 MtrunA17_Chr7g0217461 32.143 560 371 6 28 583 16 570 1.61e-96 306
Msa1211280 MtrunA17_Chr4g0014871 34.608 549 326 11 40 585 36 554 8.19e-96 304
Msa1211280 MtrunA17_Chr2g0326211 34.828 580 333 10 18 585 2 548 1.43e-95 303
Msa1211280 MtrunA17_Chr7g0261851 32.609 552 350 7 40 585 34 569 1.90e-95 304
Msa1211280 MtrunA17_Chr4g0054891 31.193 545 362 4 40 582 116 649 2.36e-95 306
Msa1211280 MtrunA17_Chr8g0353031 33.514 555 335 8 39 585 23 551 1.15e-93 298
Msa1211280 MtrunA17_Chr1g0166711 33.333 555 351 8 40 590 31 570 1.49e-93 299
Msa1211280 MtrunA17_Chr1g0193391 32.977 561 348 10 39 595 22 558 1.85e-93 299
Msa1211280 MtrunA17_Chr7g0218851 30.986 568 362 10 25 582 35 582 3.34e-93 298
Msa1211280 MtrunA17_Chr1g0177611 36.712 444 259 9 141 581 11 435 8.17e-93 292
Msa1211280 MtrunA17_Chr2g0325951 33.161 579 344 12 18 585 2 548 2.85e-92 294
Msa1211280 MtrunA17_Chr7g0261791 29.863 586 384 8 12 585 1 571 3.86e-92 295
Msa1211280 MtrunA17_Chr1g0177631 37.472 443 257 8 141 581 11 435 8.92e-91 287
Msa1211280 MtrunA17_Chr7g0271221 32.465 576 360 9 20 591 3 553 7.89e-90 289
Msa1211280 MtrunA17_Chr2g0276751 31.729 561 346 11 37 591 41 570 8.13e-89 286
Msa1211280 MtrunA17_Chr3g0133341 31.570 567 348 8 32 584 10 550 1.21e-87 283
Msa1211280 MtrunA17_Chr2g0325961 32.874 581 344 15 18 585 2 549 1.55e-87 282
Msa1211280 MtrunA17_Chr1g0166741 32.200 559 348 8 39 590 32 566 2.56e-87 282
Msa1211280 MtrunA17_Chr4g0069581 33.581 539 333 7 53 588 5 521 2.11e-85 276
Msa1211280 MtrunA17_Chr4g0014861 36.404 445 262 9 143 585 4 429 8.93e-85 271
Msa1211280 MtrunA17_Chr7g0261661 32.842 475 291 10 125 590 4 459 1.59e-84 273
Msa1211280 MtrunA17_Chr2g0284701 31.188 606 395 11 5 596 2 599 1.68e-84 275
Msa1211280 MtrunA17_Chr3g0082631 36.092 435 253 6 164 585 38 460 6.00e-84 270
Msa1211280 MtrunA17_Chr1g0166771 31.274 518 329 8 52 564 9 504 2.61e-83 271
Msa1211280 MtrunA17_Chr1g0166731 34.746 472 293 7 121 590 9 467 1.24e-82 267
Msa1211280 MtrunA17_Chr4g0011471 29.795 537 364 5 49 582 31 557 2.57e-82 269
Msa1211280 MtrunA17_Chr8g0379971 32.639 576 353 10 37 584 23 591 6.85e-82 268
Msa1211280 MtrunA17_Chr8g0362711 29.818 550 379 5 37 584 27 571 8.98e-82 268
Msa1211280 MtrunA17_Chr5g0415961 29.682 566 360 12 37 584 27 572 4.14e-76 253
Msa1211280 MtrunA17_Chr8g0379991 30.000 570 353 10 55 584 1 564 1.46e-71 240
Msa1211280 MtrunA17_Chr4g0011041 25.342 584 419 8 7 582 5 579 9.24e-67 228
Msa1211280 MtrunA17_Chr6g0451841 28.440 545 339 13 53 581 24 533 4.26e-66 225
Msa1211280 MtrunA17_Chr7g0261751 30.110 455 271 8 40 456 37 482 1.37e-65 223
Msa1211280 MtrunA17_Chr3g0112631 34.532 278 174 5 307 584 3 272 8.91e-57 193
Msa1211280 MtrunA17_Chr3g0142121 36.957 276 155 6 310 585 13 269 1.60e-54 187
Msa1211280 MtrunA17_Chr7g0261731 30.312 353 222 5 12 351 1 342 7.43e-54 187
Msa1211280 MtrunA17_Chr3g0142111 32.278 316 202 6 16 322 21 333 2.26e-51 180
Msa1211280 MtrunA17_Chr4g0060071 32.776 299 170 5 294 584 23 298 1.43e-46 166
Msa1211280 MtrunA17_Chr1g0147591 42.786 201 103 5 161 356 7 200 1.66e-44 157
Msa1211280 MtrunA17_Chr7g0234181 27.556 450 279 10 133 581 10 413 2.24e-40 152
Msa1211280 MtrunA17_Chr7g0261721 36.493 211 131 3 384 594 4 211 1.29e-38 142
Msa1211280 MtrunA17_Chr7g0234381 27.706 462 287 11 121 581 3 418 1.68e-38 147
Msa1211280 MtrunA17_Chr7g0234151 27.489 462 288 10 121 581 3 418 1.14e-37 144
Msa1211280 MtrunA17_Chr2g0326221 31.276 243 134 4 343 585 15 224 7.47e-30 117
Msa1211280 MtrunA17_Chr3g0112651 35.714 140 90 0 142 281 38 177 9.23e-25 102
Msa1211280 MtrunA17_Chr8g0362791 53.012 83 39 0 38 120 40 122 1.17e-22 94.4
Msa1211280 MtrunA17_Chr7g0261831 32.515 163 96 4 265 424 3 154 1.75e-19 87.4
Msa1211280 MtrunA17_Chr4g0060061 33.058 121 81 0 146 266 8 128 4.13e-19 84.0
Msa1211280 MtrunA17_Chr8g0382591 36.975 119 71 4 307 423 3 119 4.41e-18 81.3
Msa1211280 MtrunA17_Chr7g0240221 42.683 82 47 0 39 120 32 113 3.22e-17 78.2
Msa1211280 MtrunA17_Chr7g0240191 42.683 82 47 0 39 120 32 113 3.22e-17 78.2
Msa1211280 MtrunA17_Chr7g0240161 42.683 82 47 0 39 120 32 113 3.22e-17 78.2
Msa1211280 MtrunA17_Chr7g0240141 42.683 82 47 0 39 120 32 113 4.52e-17 77.8
Msa1211280 MtrunA17_Chr7g0235511 42.857 84 46 1 39 120 32 115 9.21e-16 73.9
Msa1211280 MtrunA17_Chr1g0147581 32.174 115 70 2 444 558 10 116 2.35e-14 69.7
Msa1211280 MtrunA17_Chr5g0415851 45.333 75 38 1 48 122 6 77 9.91e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211280 AT5G62680.1 62.411 564 209 3 23 584 30 592 0.0 754
Msa1211280 AT1G18880.1 60.417 576 222 4 20 592 2 574 0.0 748
Msa1211280 AT3G47960.1 60.791 556 215 3 30 584 55 608 0.0 715
Msa1211280 AT1G69870.1 46.528 576 289 7 13 584 34 594 0.0 531
Msa1211280 AT1G27080.1 44.324 555 277 9 39 584 17 548 7.76e-156 459
Msa1211280 AT1G27080.2 43.478 529 267 9 65 584 1 506 2.20e-142 424
Msa1211280 AT5G28470.2 37.818 550 319 7 39 581 20 553 2.60e-138 414
Msa1211280 AT1G69860.1 39.510 572 314 8 23 585 2 550 9.76e-137 410
Msa1211280 AT1G52190.1 36.749 566 346 8 22 581 7 566 5.18e-136 410
Msa1211280 AT5G28470.1 37.636 550 318 8 39 581 20 551 3.27e-135 406
Msa1211280 AT1G68570.1 37.372 586 353 7 21 597 1 581 2.50e-133 402
Msa1211280 AT3G54140.1 36.054 588 355 8 4 590 2 569 1.11e-131 397
Msa1211280 AT3G54140.2 36.054 588 355 8 4 590 2 569 1.11e-131 397
Msa1211280 AT3G16180.1 36.077 571 351 10 18 581 2 565 2.19e-130 395
Msa1211280 AT5G01180.2 36.348 575 345 8 21 585 1 564 4.23e-129 390
Msa1211280 AT5G01180.3 36.348 575 345 8 21 585 1 564 4.23e-129 390
Msa1211280 AT5G01180.1 36.348 575 345 8 21 585 1 564 4.23e-129 390
Msa1211280 AT1G68570.2 37.681 552 337 6 48 597 5 551 7.65e-128 387
Msa1211280 AT2G02040.1 34.648 583 370 7 7 588 13 585 3.04e-122 374
Msa1211280 AT1G62200.1 38.504 548 319 6 40 584 56 588 2.60e-121 371
Msa1211280 AT1G62200.2 36.742 577 318 7 40 584 56 617 3.57e-118 364
Msa1211280 AT1G62200.3 36.742 577 318 7 40 584 70 631 8.57e-118 363
Msa1211280 AT2G02020.1 33.559 590 326 8 12 583 1 542 2.58e-107 333
Msa1211280 AT4G21680.1 33.818 550 349 6 40 583 32 572 2.75e-104 327
Msa1211280 AT3G54450.1 33.996 553 335 10 39 585 15 543 1.37e-103 324
Msa1211280 AT3G45660.1 34.220 564 344 9 22 585 7 543 2.37e-103 324
Msa1211280 AT3G45660.3 34.220 564 344 9 22 585 7 543 2.37e-103 324
Msa1211280 AT3G45660.2 34.220 564 344 9 22 585 28 564 4.73e-103 323
Msa1211280 AT3G45650.1 34.369 547 332 9 39 585 25 544 1.10e-102 322
Msa1211280 AT2G37900.1 34.062 549 336 9 39 584 41 566 2.81e-102 322
Msa1211280 AT3G21670.1 33.507 576 352 7 18 587 11 561 3.57e-102 322
Msa1211280 AT5G13400.1 34.452 566 348 11 39 593 67 620 9.03e-102 322
Msa1211280 AT3G53960.1 32.727 550 350 7 39 584 40 573 3.46e-99 314
Msa1211280 AT1G59740.1 33.276 577 359 10 13 580 14 573 4.08e-99 314
Msa1211280 AT3G45680.1 32.566 565 355 7 21 585 5 543 6.13e-99 312
Msa1211280 AT1G12110.1 33.989 559 339 7 39 585 30 570 6.31e-98 311
Msa1211280 AT3G45650.2 32.810 573 332 10 39 585 25 570 5.82e-97 308
Msa1211280 AT3G45720.1 32.305 551 338 9 39 585 22 541 2.54e-96 305
Msa1211280 AT2G26690.1 34.432 546 340 8 39 582 27 556 3.97e-95 303
Msa1211280 AT5G46050.1 30.940 585 383 8 11 590 2 570 2.07e-94 301
Msa1211280 AT1G32450.1 30.308 584 384 7 15 582 6 582 2.34e-94 302
Msa1211280 AT1G33440.1 32.746 568 350 10 37 596 39 582 3.01e-94 301
Msa1211280 AT2G37900.2 33.399 506 311 8 83 585 6 488 3.20e-93 295
Msa1211280 AT5G46040.1 32.079 558 358 7 40 592 31 572 6.14e-93 297
Msa1211280 AT2G26690.2 34.451 537 334 8 48 582 3 523 8.21e-93 296
Msa1211280 AT5G19640.1 29.564 619 380 12 1 594 4 591 5.02e-92 296
Msa1211280 AT2G40460.1 32.206 562 352 9 40 595 28 566 1.18e-91 294
Msa1211280 AT1G22550.1 32.404 574 357 8 18 585 12 560 1.94e-91 293
Msa1211280 AT3G45700.1 31.327 565 356 7 21 585 1 533 3.24e-91 292
Msa1211280 AT3G45710.1 30.906 563 364 7 23 585 8 545 6.79e-91 291
Msa1211280 AT2G26690.3 34.345 527 328 8 58 582 1 511 4.29e-90 288
Msa1211280 AT1G22540.1 33.029 548 331 8 39 581 33 549 3.35e-88 284
Msa1211280 AT1G72125.1 32.586 580 362 8 10 585 3 557 4.95e-88 284
Msa1211280 AT1G72130.1 32.491 554 316 12 39 583 28 532 2.03e-87 281
Msa1211280 AT1G22570.1 32.404 574 358 10 18 585 12 561 1.19e-85 278
Msa1211280 AT1G27040.1 30.144 554 359 7 37 583 28 560 1.48e-85 278
Msa1211280 AT1G27040.2 30.144 554 359 7 37 583 24 556 1.71e-85 277
Msa1211280 AT1G72140.1 30.705 596 357 12 1 586 5 554 3.27e-85 276
Msa1211280 AT1G69850.1 29.848 593 394 8 12 590 1 585 1.16e-84 276
Msa1211280 AT1G27040.3 30.314 541 349 7 50 583 9 528 1.41e-83 271
Msa1211280 AT1G72120.1 32.069 580 361 10 10 585 3 553 5.42e-82 268
Msa1211280 AT1G22570.2 32.477 545 338 10 47 585 4 524 5.30e-81 265
Msa1211280 AT3G45690.1 29.806 567 322 14 23 585 6 500 4.21e-78 256
Msa1211280 AT5G46050.2 32.489 474 299 8 122 590 1 458 1.08e-77 254
Msa1211280 AT5G62730.1 29.749 558 355 9 37 585 57 586 3.21e-77 256
Msa1211280 AT5G62730.2 29.818 550 349 9 45 585 6 527 1.42e-76 253
Msa1211280 AT2G02020.2 29.899 592 324 13 12 583 1 521 7.43e-76 251
Msa1211280 AT5G14940.1 29.144 549 341 13 53 584 24 541 3.68e-75 249
Msa1211280 AT1G72130.2 32.166 457 256 10 136 583 3 414 1.62e-73 241
Msa1211280 AT1G72130.3 32.166 457 256 10 136 583 3 414 1.62e-73 241
Msa1211280 AT3G01350.1 27.568 555 348 12 53 582 24 549 4.41e-64 221
Msa1211280 AT3G25260.1 28.647 569 348 12 15 581 3 515 1.11e-62 216
Msa1211280 AT3G25280.1 27.241 569 360 15 18 581 2 521 1.89e-51 185
Msa1211280 AT5G11570.1 34.231 260 158 2 322 581 230 476 6.21e-47 172
Msa1211280 AT5G11570.1 34.667 225 140 3 35 256 12 232 1.76e-37 145
Msa1211280 AT2G38100.1 24.299 535 346 18 60 583 14 500 9.50e-28 117
Msa1211280 AT2G38100.3 24.299 535 346 18 60 583 20 506 1.22e-27 117
Msa1211280 AT2G38100.2 24.105 531 344 18 64 583 2 484 1.53e-27 117

Find 107 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTGATACATATTT+TGG 0.129529 8_1:+70846640 Msa1211280:CDS
ATTAACAATGTTACAATTAA+AGG 0.135122 8_1:-70849868 None:intergenic
GGAATAAATGTTATTATATA+TGG 0.143817 8_1:+70849825 Msa1211280:three_prime_UTR
CATATATAACTGTGCATAAA+TGG 0.151166 8_1:+70846241 Msa1211280:exon
CCAAATCTGCTACAGGAAAT+TGG 0.223411 8_1:+70849620 Msa1211280:CDS
CTCCCTTTATTAAGATCTTC+TGG 0.250656 8_1:-70849646 None:intergenic
CCAATTTCCTGTAGCAGATT+TGG 0.255669 8_1:-70849620 None:intergenic
CAGCCTCTGTGGATGATCTT+AGG 0.259636 8_1:-70846356 None:intergenic
TTCCTTACACATATCAATTC+AGG 0.263655 8_1:+70847728 Msa1211280:CDS
CATTCCAAACAGGGATTACT+TGG 0.266253 8_1:+70847178 Msa1211280:intron
TAATGTTAAGCATGACATTA+TGG 0.268892 8_1:+70849191 Msa1211280:CDS
ATTGGTGTTGGAATATTTCT+AGG 0.270353 8_1:+70849295 Msa1211280:CDS
TTCTCTATATTTGTACCATT+TGG 0.275198 8_1:-70849737 None:intergenic
TGCATATTATTATACTTTCA+TGG 0.309975 8_1:-70849793 None:intergenic
GAAGAAATATGTATATAGTT+GGG 0.330670 8_1:-70846191 None:intergenic
TTACCAGAAGATCTTAATAA+AGG 0.332263 8_1:+70849643 Msa1211280:CDS
GGATTTGGTTTACTGTTAAT+AGG 0.335496 8_1:+70847307 Msa1211280:CDS
TTTCTTGGTTGCATTCCAAT+AGG 0.353350 8_1:-70849382 None:intergenic
CTGCTGCTACTACTACTAAT+AGG 0.356018 8_1:-70849760 None:intergenic
ACCAACTTTGCTACCTTGCT+TGG 0.356960 8_1:+70846613 Msa1211280:CDS
TTAGCTTTAACTAAGCCTAT+TGG 0.370660 8_1:+70849367 Msa1211280:CDS
GGAAGAAATATGTATATAGT+TGG 0.380320 8_1:-70846192 None:intergenic
GGCGCGATTTCGTCGATGTC+TGG 0.381630 8_1:+70849406 Msa1211280:CDS
ATCACAGTCCTTCAAAGAAT+TGG 0.387420 8_1:+70849277 Msa1211280:CDS
GTTCCTCAGTTGATACTAGC+TGG 0.396535 8_1:+70849439 Msa1211280:CDS
GAATCAATAGTTTCTTCAAT+TGG 0.404560 8_1:+70847407 Msa1211280:CDS
TAATAATATGCACAATCTTA+AGG 0.406091 8_1:+70849804 Msa1211280:three_prime_UTR
TTCCAACACCAATTCTTTGA+AGG 0.409566 8_1:-70849285 None:intergenic
AACTAGAAAACAAAGGTCAT+TGG 0.414450 8_1:-70846160 None:intergenic
TCAAATGTGAGCTGGGCAAT+TGG 0.416070 8_1:+70847490 Msa1211280:CDS
AGACCATGTAACTTAGCATT+TGG 0.416324 8_1:+70847343 Msa1211280:CDS
AAAGCCATTTGTCCTGTTGT+TGG 0.429093 8_1:-70847274 None:intergenic
AGATCTTAATAAAGGGAGAT+TGG 0.435026 8_1:+70849651 Msa1211280:CDS
TACCAGAAGATCTTAATAAA+GGG 0.436377 8_1:+70849644 Msa1211280:CDS
GGATCAGCTGATGAACCATC+TGG 0.441864 8_1:-70848971 None:intergenic
GTGAGCTGGGCAATTGGTCT+TGG 0.444917 8_1:+70847496 Msa1211280:CDS
TGGAACATTAGCAAACTTGT+TGG 0.452206 8_1:+70846519 Msa1211280:CDS
CATATTTCTTCCTCCTGACC+AGG 0.457374 8_1:+70846203 Msa1211280:five_prime_UTR
AGAACCAACAACAGGACAAA+TGG 0.467232 8_1:+70847270 Msa1211280:CDS
AGTGGAAGAGTTGAAATGTT+TGG 0.475400 8_1:+70849018 Msa1211280:CDS
AAGGTCATGCCTTTCATCAT+AGG 0.477830 8_1:+70846380 Msa1211280:CDS
AAAATTGCTGAAAACCATAT+AGG 0.479481 8_1:-70849052 None:intergenic
AGTAGTAGTAGCAGCAGCAT+TGG 0.482165 8_1:+70849766 Msa1211280:CDS
ACTAGAAAACAAAGGTCATT+GGG 0.483791 8_1:-70846159 None:intergenic
CTAAGATCATCCACAGAGGC+TGG 0.484422 8_1:+70846357 Msa1211280:CDS
ATATATAACTGTGCATAAAT+GGG 0.485238 8_1:+70846242 Msa1211280:exon
AAAACAGATTCAGGAAAGAA+AGG 0.485517 8_1:+70847385 Msa1211280:CDS
AAGAAATATGTATATAGTTG+GGG 0.488382 8_1:-70846190 None:intergenic
ACAACTATTCTATCATAGAT+TGG 0.488817 8_1:-70849217 None:intergenic
AATTAGAAATTTGAAAGGAT+CGG 0.488922 8_1:+70849888 Msa1211280:three_prime_UTR
CCTGAGAATATGAAAAGCAT+TGG 0.492874 8_1:+70849517 Msa1211280:CDS
GAAATTTGAAAGGATCGGAA+TGG 0.493644 8_1:+70849893 Msa1211280:three_prime_UTR
AAATTTGAAAGGATCGGAAT+GGG 0.497160 8_1:+70849894 Msa1211280:three_prime_UTR
ATCTAGATAACACCCTGGTC+AGG 0.498936 8_1:-70846216 None:intergenic
CTTTCCTTTGCACAGTGTGG+TGG 0.509167 8_1:-70847235 None:intergenic
CTTCAATCAAATAGACGAAT+GGG 0.509746 8_1:+70849124 Msa1211280:CDS
TACCTGAATTGATATGTGTA+AGG 0.513650 8_1:-70847730 None:intergenic
GTCCTTCAAAGAATTGGTGT+TGG 0.515088 8_1:+70849283 Msa1211280:CDS
ACCAAGCAAGGTAGCAAAGT+TGG 0.519987 8_1:-70846614 None:intergenic
ATTGGAATGCAACCAAGAAA+AGG 0.521618 8_1:+70849385 Msa1211280:CDS
ACAACTTCCAAATCTGCTAC+AGG 0.522592 8_1:+70849613 Msa1211280:CDS
ATATACAATCAAATGTGAGC+TGG 0.522986 8_1:+70847482 Msa1211280:CDS
GAGAATATGAAAAGCATTGG+AGG 0.523033 8_1:+70849520 Msa1211280:CDS
ACATGCAAAGAACCAACAAC+AGG 0.523772 8_1:+70847262 Msa1211280:CDS
GCTATTAACATCAAAGCAGC+AGG 0.526773 8_1:-70847523 None:intergenic
TTACTGTTAATAGGTGCTGC+AGG 0.527961 8_1:+70847316 Msa1211280:CDS
CAAGTTTGCTAATGTTCCAA+TGG 0.533736 8_1:-70846515 None:intergenic
TATACAATCAAATGTGAGCT+GGG 0.543295 8_1:+70847483 Msa1211280:CDS
GAAAGCATTGGATGCTGAGA+AGG 0.544284 8_1:-70847664 None:intergenic
TCGGTGAATCTTCGGAGCAA+AGG 0.545760 8_1:-70849241 None:intergenic
ATGGTTCATCAGCTGATCCA+TGG 0.546248 8_1:+70848975 Msa1211280:CDS
CTAGTGATGGGACTACCACT+TGG 0.547626 8_1:-70847592 None:intergenic
TGTTGTTGGTTCTTTGCATG+TGG 0.552280 8_1:-70847260 None:intergenic
TGCACCAGGTATCTTGAAGT+TGG 0.552408 8_1:-70849152 None:intergenic
ACTTCAATCAAATAGACGAA+TGG 0.564079 8_1:+70849123 Msa1211280:CDS
TACCATTTGTGCAAAAGTGA+AGG 0.567355 8_1:-70847440 None:intergenic
AAGCTTTGAATTAATAGACA+TGG 0.568737 8_1:-70847707 None:intergenic
GGAGAAAGAGAGACAGAAGA+AGG 0.569451 8_1:+70846263 Msa1211280:CDS
ACACCAAATGCTAAGTTACA+TGG 0.574582 8_1:-70847346 None:intergenic
AGAGAAGAAAGCACCAAGCA+AGG 0.574955 8_1:-70846626 None:intergenic
GTTGCTGAACAATAACTAGA+TGG 0.575128 8_1:-70849078 None:intergenic
TAATCAAAGAGTGAAAGCAT+TGG 0.577528 8_1:-70847676 None:intergenic
GATCATCCACAGAGGCTGGA+AGG 0.582360 8_1:+70846361 Msa1211280:CDS
TTGTTAATTAGAAATTTGAA+AGG 0.583405 8_1:+70849883 Msa1211280:three_prime_UTR
AACACCAACTTCAAGATACC+TGG 0.590112 8_1:+70849148 Msa1211280:CDS
CATTAATTACCTATGATGAA+AGG 0.593430 8_1:-70846389 None:intergenic
AGCTTTGAATTAATAGACAT+GGG 0.599389 8_1:-70847706 None:intergenic
GCATGACCTTCCAGCCTCTG+TGG 0.600147 8_1:-70846367 None:intergenic
TCTTTGCAGCATACAACAAG+TGG 0.605971 8_1:+70849000 Msa1211280:CDS
AACATCATCAATATCTTCAG+TGG 0.606716 8_1:+70846586 Msa1211280:CDS
TATGTAAAAGTTAAACCAAG+TGG 0.609163 8_1:+70847577 Msa1211280:CDS
TGTATGCTGCAAAGACTCCA+TGG 0.610232 8_1:-70848992 None:intergenic
GCACTTTCCTTTGCACAGTG+TGG 0.621780 8_1:-70847238 None:intergenic
TAGATAACACCCTGGTCAGG+AGG 0.622012 8_1:-70846213 None:intergenic
TAACATTAAGAAGACAGTGT+AGG 0.625125 8_1:-70849176 None:intergenic
TCATCCACCACACTGTGCAA+AGG 0.625702 8_1:+70847231 Msa1211280:CDS
AGAAATATGTATATAGTTGG+GGG 0.626474 8_1:-70846189 None:intergenic
ATATTTCTTCCTCCTGACCA+GGG 0.635142 8_1:+70846204 Msa1211280:five_prime_UTR
CAAGACAAAATAAATCCAGA+TGG 0.635882 8_1:+70848956 Msa1211280:CDS
AGAATATGAAAAGCATTGGA+GGG 0.646435 8_1:+70849521 Msa1211280:CDS
AAGACAGTGTAGGATGCACC+AGG 0.652597 8_1:-70849166 None:intergenic
TTTGAATTAATAGACATGGG+TGG 0.673189 8_1:-70847703 None:intergenic
GAGGTTGAACTAGAAAACAA+AGG 0.698480 8_1:-70846167 None:intergenic
AATTGAGAAAGAAAACAACA+TGG 0.708030 8_1:+70846301 Msa1211280:CDS
AATCCAGCTAGTATCAACTG+AGG 0.717630 8_1:-70849442 None:intergenic
ATGCAATCTAGATAACACCC+TGG 0.728647 8_1:-70846221 None:intergenic
GAACCTAAGATCATCCACAG+AGG 0.792669 8_1:+70846353 Msa1211280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATACTATAATTAATTTGT+AGG - chr8_1:70846919-70846938 None:intergenic 10.0%
!! ATAAATGAATTAAAATTTGA+TGG - chr8_1:70847763-70847782 None:intergenic 10.0%
!! GAATATTTATATGTAAAATT+AGG + chr8_1:70848234-70848253 Msa1211280:intron 10.0%
!! AATTTAATATCTAAACTTAA+CGG + chr8_1:70848629-70848648 Msa1211280:intron 10.0%
!! TAATACTATTAGATAAAAAT+AGG + chr8_1:70848903-70848922 Msa1211280:intron 10.0%
!! AATACTATTAGATAAAAATA+GGG + chr8_1:70848904-70848923 Msa1211280:intron 10.0%
!!! AATGAAACTTTTGAAAAATT+AGG + chr8_1:70846490-70846509 Msa1211280:CDS 15.0%
!!! AATATTTAGTTTTAGTCAAA+TGG - chr8_1:70846733-70846752 None:intergenic 15.0%
!!! AAAAACTTTTCAATTAATTG+TGG + chr8_1:70846801-70846820 Msa1211280:intron 15.0%
!!! TATATTTTCTTAAATCCTTA+CGG - chr8_1:70847009-70847028 None:intergenic 15.0%
!!! TTTGAAACAAAAAAACTTAA+AGG - chr8_1:70848019-70848038 None:intergenic 15.0%
!!! TAAGTTTTTTTGTTTCAAAT+TGG + chr8_1:70848020-70848039 Msa1211280:intron 15.0%
!! AGATAATTTAAAAGATCAAT+TGG + chr8_1:70848437-70848456 Msa1211280:intron 15.0%
!! AAATGTAACAAATTTACAAA+AGG - chr8_1:70848532-70848551 None:intergenic 15.0%
!! AGATATTAAATTAAATCATC+TGG - chr8_1:70848621-70848640 None:intergenic 15.0%
!! AAACAAATAAAAAATCTACT+AGG - chr8_1:70848863-70848882 None:intergenic 15.0%
!! GGAATAAATGTTATTATATA+TGG + chr8_1:70849825-70849844 Msa1211280:three_prime_UTR 15.0%
!! ATTAACAATGTTACAATTAA+AGG - chr8_1:70849871-70849890 None:intergenic 15.0%
!! TTGTTAATTAGAAATTTGAA+AGG + chr8_1:70849883-70849902 Msa1211280:three_prime_UTR 15.0%
!! AAGAAATATGTATATAGTTG+GGG - chr8_1:70846193-70846212 None:intergenic 20.0%
!! GAAGAAATATGTATATAGTT+GGG - chr8_1:70846194-70846213 None:intergenic 20.0%
!! ATATATAACTGTGCATAAAT+GGG + chr8_1:70846242-70846261 Msa1211280:exon 20.0%
!!! GTTTTAACTTTTTTCAACAT+TGG - chr8_1:70846776-70846795 None:intergenic 20.0%
!!! AATTTTTCATGAAACATTCT+AGG - chr8_1:70846837-70846856 None:intergenic 20.0%
!!! ATAATTAATTTGTAGGAGTT+TGG - chr8_1:70846912-70846931 None:intergenic 20.0%
!! TAAGAAAATATATGTTGTAC+TGG + chr8_1:70846939-70846958 Msa1211280:intron 20.0%
!! ACATTAAAAAAGCAAAGTAA+CGG - chr8_1:70847819-70847838 None:intergenic 20.0%
!!! TGGTAGTGATAATTTTTTAA+AGG + chr8_1:70847944-70847963 Msa1211280:intron 20.0%
!! GTTATAATCATGTAACTTAA+AGG - chr8_1:70847988-70848007 None:intergenic 20.0%
!! TGATTAAGTTTGATGAAATT+AGG - chr8_1:70848076-70848095 None:intergenic 20.0%
!! AATTATCTCTTGTTACAAAT+TGG - chr8_1:70848425-70848444 None:intergenic 20.0%
!! TTAATCTATGTGAAAAAATC+AGG + chr8_1:70848562-70848581 Msa1211280:intron 20.0%
!! TATCTTAAATGAACAAGATA+TGG - chr8_1:70848771-70848790 None:intergenic 20.0%
!!! AAATGTTGAGTTGAATAATT+TGG - chr8_1:70848794-70848813 None:intergenic 20.0%
!!! AACATTTTCATAAACTAGAT+TGG + chr8_1:70848807-70848826 Msa1211280:intron 20.0%
!! ATTAGATAAAAATAGGGTAT+TGG + chr8_1:70848910-70848929 Msa1211280:intron 20.0%
!!! TATTTTTATTACATGATTGC+TGG + chr8_1:70849676-70849695 Msa1211280:CDS 20.0%
!!! ATTTTTATTACATGATTGCT+GGG + chr8_1:70849677-70849696 Msa1211280:CDS 20.0%
!! TGCATATTATTATACTTTCA+TGG - chr8_1:70849796-70849815 None:intergenic 20.0%
!! TAATAATATGCACAATCTTA+AGG + chr8_1:70849804-70849823 Msa1211280:three_prime_UTR 20.0%
!! AATTAGAAATTTGAAAGGAT+CGG + chr8_1:70849888-70849907 Msa1211280:three_prime_UTR 20.0%
! AGAAATATGTATATAGTTGG+GGG - chr8_1:70846192-70846211 None:intergenic 25.0%
! GGAAGAAATATGTATATAGT+TGG - chr8_1:70846195-70846214 None:intergenic 25.0%
! CATATATAACTGTGCATAAA+TGG + chr8_1:70846241-70846260 Msa1211280:exon 25.0%
! AATTGAGAAAGAAAACAACA+TGG + chr8_1:70846301-70846320 Msa1211280:CDS 25.0%
! CATTAATTACCTATGATGAA+AGG - chr8_1:70846392-70846411 None:intergenic 25.0%
!!! GCTTGAAATTTTTTATGAAC+AGG + chr8_1:70846466-70846485 Msa1211280:intron 25.0%
!! TTCTTCTCTGATACATATTT+TGG + chr8_1:70846640-70846659 Msa1211280:CDS 25.0%
!!! GTTTGGTGTTTCATAAAATT+TGG - chr8_1:70846895-70846914 None:intergenic 25.0%
! TGTATATAATATCGTCATGT+CGG + chr8_1:70847035-70847054 Msa1211280:intron 25.0%
! GAATCAATAGTTTCTTCAAT+TGG + chr8_1:70847407-70847426 Msa1211280:CDS 25.0%
! TATGTAAAAGTTAAACCAAG+TGG + chr8_1:70847577-70847596 Msa1211280:CDS 25.0%
! ACTTGAAAAATACTAGTGAT+GGG - chr8_1:70847607-70847626 None:intergenic 25.0%
!!! TAGTATTTTTCAAGTCTTAG+TGG + chr8_1:70847612-70847631 Msa1211280:CDS 25.0%
!!! AGCTTTGAATTAATAGACAT+GGG - chr8_1:70847709-70847728 None:intergenic 25.0%
!!! AAGCTTTGAATTAATAGACA+TGG - chr8_1:70847710-70847729 None:intergenic 25.0%
! CATTAAAAAAGCAAAGTAAC+GGG - chr8_1:70847818-70847837 None:intergenic 25.0%
!!! GTTACTTTGCTTTTTTAATG+TGG + chr8_1:70847818-70847837 Msa1211280:intron 25.0%
!! TAAAGGCCAAATACTATTTT+CGG + chr8_1:70847961-70847980 Msa1211280:intron 25.0%
! GTTTGATGAAATTAGGATAA+TGG - chr8_1:70848069-70848088 None:intergenic 25.0%
!!! CTTAATCAAAAAGTGTTATG+TGG + chr8_1:70848088-70848107 Msa1211280:intron 25.0%
! CCATCTAACATTAAGATTAT+AGG - chr8_1:70848331-70848350 None:intergenic 25.0%
! CCTATAATCTTAATGTTAGA+TGG + chr8_1:70848328-70848347 Msa1211280:intron 25.0%
! TGGTAACAAAAGAAACTTAA+AGG + chr8_1:70848457-70848476 Msa1211280:intron 25.0%
! AATGAACAAGATATGGAAAT+TGG - chr8_1:70848764-70848783 None:intergenic 25.0%
! AAAATTGCTGAAAACCATAT+AGG - chr8_1:70849055-70849074 None:intergenic 25.0%
! TAATGTTAAGCATGACATTA+TGG + chr8_1:70849191-70849210 Msa1211280:CDS 25.0%
! ACAACTATTCTATCATAGAT+TGG - chr8_1:70849220-70849239 None:intergenic 25.0%
! TTACCAGAAGATCTTAATAA+AGG + chr8_1:70849643-70849662 Msa1211280:CDS 25.0%
! TACCAGAAGATCTTAATAAA+GGG + chr8_1:70849644-70849663 Msa1211280:CDS 25.0%
!! ACTTTTTGATGTTTTCCAAA+TGG + chr8_1:70849722-70849741 Msa1211280:CDS 25.0%
! TTCTCTATATTTGTACCATT+TGG - chr8_1:70849740-70849759 None:intergenic 25.0%
!!! TTTGTGAAAAAAGTACTTCT+AGG - chr8_1:70849952-70849971 None:intergenic 25.0%
TTTGAAAAATTAGGAGCCAT+TGG + chr8_1:70846499-70846518 Msa1211280:CDS 30.0%
AACATCATCAATATCTTCAG+TGG + chr8_1:70846586-70846605 Msa1211280:CDS 30.0%
GCAAGGAAGAAGATTTAAAA+GGG - chr8_1:70847159-70847178 None:intergenic 30.0%
TGCAAGGAAGAAGATTTAAA+AGG - chr8_1:70847160-70847179 None:intergenic 30.0%
! CAAATGGCTTTTCTAATATC+AGG + chr8_1:70847286-70847305 Msa1211280:CDS 30.0%
! GCTTTTCTAATATCAGGATT+TGG + chr8_1:70847292-70847311 Msa1211280:CDS 30.0%
! GGATTTGGTTTACTGTTAAT+AGG + chr8_1:70847307-70847326 Msa1211280:CDS 30.0%
TTCAATCCAAAAACAGATTC+AGG + chr8_1:70847376-70847395 Msa1211280:CDS 30.0%
! TTCTTTCCTGAATCTGTTTT+TGG - chr8_1:70847385-70847404 None:intergenic 30.0%
AAAACAGATTCAGGAAAGAA+AGG + chr8_1:70847385-70847404 Msa1211280:CDS 30.0%
ATATACAATCAAATGTGAGC+TGG + chr8_1:70847482-70847501 Msa1211280:CDS 30.0%
TATACAATCAAATGTGAGCT+GGG + chr8_1:70847483-70847502 Msa1211280:CDS 30.0%
!!! AGCATGTGTGTTATTTTTCA+TGG + chr8_1:70847543-70847562 Msa1211280:CDS 30.0%
!!! GCATGTGTGTTATTTTTCAT+GGG + chr8_1:70847544-70847563 Msa1211280:CDS 30.0%
GACTTGAAAAATACTAGTGA+TGG - chr8_1:70847608-70847627 None:intergenic 30.0%
! TAATCAAAGAGTGAAAGCAT+TGG - chr8_1:70847679-70847698 None:intergenic 30.0%
TTTGAATTAATAGACATGGG+TGG - chr8_1:70847706-70847725 None:intergenic 30.0%
TTCCTTACACATATCAATTC+AGG + chr8_1:70847728-70847747 Msa1211280:CDS 30.0%
TACCTGAATTGATATGTGTA+AGG - chr8_1:70847733-70847752 None:intergenic 30.0%
! ATGGATGGAGTACAATTTTA+TGG - chr8_1:70847787-70847806 None:intergenic 30.0%
! ATTGTACTCCATCCATTTTA+AGG + chr8_1:70847791-70847810 Msa1211280:intron 30.0%
! AGTAGACACGTTTAATTTAG+AGG - chr8_1:70847870-70847889 None:intergenic 30.0%
CATTTATCACTAGTAACAGT+TGG + chr8_1:70847924-70847943 Msa1211280:intron 30.0%
AAAGGACCGAAAATAGTATT+TGG - chr8_1:70847970-70847989 None:intergenic 30.0%
GTGGATGTTTAATGTTAAGT+TGG + chr8_1:70848107-70848126 Msa1211280:intron 30.0%
!! AACAAAGTTTGCTGAAAAGA+TGG + chr8_1:70848367-70848386 Msa1211280:intron 30.0%
ACAAAAAACTAATGTGATCG+AGG + chr8_1:70848734-70848753 Msa1211280:intron 30.0%
CAAGACAAAATAAATCCAGA+TGG + chr8_1:70848956-70848975 Msa1211280:CDS 30.0%
ACTTCAATCAAATAGACGAA+TGG + chr8_1:70849123-70849142 Msa1211280:CDS 30.0%
CTTCAATCAAATAGACGAAT+GGG + chr8_1:70849124-70849143 Msa1211280:CDS 30.0%
TAACATTAAGAAGACAGTGT+AGG - chr8_1:70849179-70849198 None:intergenic 30.0%
!! ATTGGTGTTGGAATATTTCT+AGG + chr8_1:70849295-70849314 Msa1211280:CDS 30.0%
!! TTAGCTTTAACTAAGCCTAT+TGG + chr8_1:70849367-70849386 Msa1211280:CDS 30.0%
!! AGAATATGAAAAGCATTGGA+GGG + chr8_1:70849521-70849540 Msa1211280:CDS 30.0%
AGATCTTAATAAAGGGAGAT+TGG + chr8_1:70849651-70849670 Msa1211280:CDS 30.0%
AAATTTGAAAGGATCGGAAT+GGG + chr8_1:70849894-70849913 Msa1211280:three_prime_UTR 30.0%
! GGTATTTTCATGTTTCATTG+TGG + chr8_1:70849915-70849934 Msa1211280:three_prime_UTR 30.0%
GAGGTTGAACTAGAAAACAA+AGG - chr8_1:70846170-70846189 None:intergenic 35.0%
AATATGTATATAGTTGGGGG+AGG - chr8_1:70846189-70846208 None:intergenic 35.0%
!! CAAGTTTGCTAATGTTCCAA+TGG - chr8_1:70846518-70846537 None:intergenic 35.0%
TGGAACATTAGCAAACTTGT+TGG + chr8_1:70846519-70846538 Msa1211280:CDS 35.0%
! TTGCAGCTGTAATGTTTTTC+AGG - chr8_1:70846567-70846586 None:intergenic 35.0%
!! TATATGTTGTACTGGCTTGT+TGG + chr8_1:70846947-70846966 Msa1211280:intron 35.0%
TATTCCAAGTAATCCCTGTT+TGG - chr8_1:70847185-70847204 None:intergenic 35.0%
AGACCATGTAACTTAGCATT+TGG + chr8_1:70847343-70847362 Msa1211280:CDS 35.0%
ACACCAAATGCTAAGTTACA+TGG - chr8_1:70847349-70847368 None:intergenic 35.0%
!! TACCTTCACTTTTGCACAAA+TGG + chr8_1:70847438-70847457 Msa1211280:CDS 35.0%
TACCATTTGTGCAAAAGTGA+AGG - chr8_1:70847443-70847462 None:intergenic 35.0%
!!! TGTGTGTTATTTTTCATGGG+AGG + chr8_1:70847547-70847566 Msa1211280:CDS 35.0%
! AAAGTAACGGGACCTTAAAA+TGG - chr8_1:70847806-70847825 None:intergenic 35.0%
CTCTCAAAACTAAAGCTCAT+AGG + chr8_1:70848147-70848166 Msa1211280:intron 35.0%
! AAGCTCATAGGTGTGTTATT+CGG + chr8_1:70848159-70848178 Msa1211280:intron 35.0%
TTTGCTGAAAAGATGGATGA+CGG + chr8_1:70848374-70848393 Msa1211280:intron 35.0%
GTCATAAAAGTTGTCTCACA+TGG - chr8_1:70848701-70848720 None:intergenic 35.0%
AGTGGAAGAGTTGAAATGTT+TGG + chr8_1:70849018-70849037 Msa1211280:CDS 35.0%
! TGGTGAGAGTTTTACCTATA+TGG + chr8_1:70849038-70849057 Msa1211280:CDS 35.0%
GTTGCTGAACAATAACTAGA+TGG - chr8_1:70849081-70849100 None:intergenic 35.0%
!!! CTTCTTTTTCGGTGAATCTT+CGG - chr8_1:70849252-70849271 None:intergenic 35.0%
ATCACAGTCCTTCAAAGAAT+TGG + chr8_1:70849277-70849296 Msa1211280:CDS 35.0%
TTCCAACACCAATTCTTTGA+AGG - chr8_1:70849288-70849307 None:intergenic 35.0%
TTTCTTGGTTGCATTCCAAT+AGG - chr8_1:70849385-70849404 None:intergenic 35.0%
ATTGGAATGCAACCAAGAAA+AGG + chr8_1:70849385-70849404 Msa1211280:CDS 35.0%
! CCAATGCTTTTCATATTCTC+AGG - chr8_1:70849520-70849539 None:intergenic 35.0%
! CCTGAGAATATGAAAAGCAT+TGG + chr8_1:70849517-70849536 Msa1211280:CDS 35.0%
!! GAGAATATGAAAAGCATTGG+AGG + chr8_1:70849520-70849539 Msa1211280:CDS 35.0%
CTCCCTTTATTAAGATCTTC+TGG - chr8_1:70849649-70849668 None:intergenic 35.0%
GAAATTTGAAAGGATCGGAA+TGG + chr8_1:70849893-70849912 Msa1211280:three_prime_UTR 35.0%
!! TGAAAAAAGTACTTCTAGGC+AGG - chr8_1:70849948-70849967 None:intergenic 35.0%
ATATTTCTTCCTCCTGACCA+GGG + chr8_1:70846204-70846223 Msa1211280:five_prime_UTR 40.0%
ATGCAATCTAGATAACACCC+TGG - chr8_1:70846224-70846243 None:intergenic 40.0%
AAGGTCATGCCTTTCATCAT+AGG + chr8_1:70846380-70846399 Msa1211280:CDS 40.0%
! CTGCACAATCACTTCTTTTC+TGG + chr8_1:70846684-70846703 Msa1211280:CDS 40.0%
! CTTCAGATTAAAGGTGTGTC+TGG - chr8_1:70847064-70847083 None:intergenic 40.0%
! ACACCTTTAATCTGAAGCGT+TGG + chr8_1:70847067-70847086 Msa1211280:intron 40.0%
TGCTACATAGTGTATGTGTC+TGG + chr8_1:70847090-70847109 Msa1211280:intron 40.0%
TTCTTCCTTGCATTCCAAAC+AGG + chr8_1:70847168-70847187 Msa1211280:intron 40.0%
TCTTCCTTGCATTCCAAACA+GGG + chr8_1:70847169-70847188 Msa1211280:intron 40.0%
! TAATCCCTGTTTGGAATGCA+AGG - chr8_1:70847176-70847195 None:intergenic 40.0%
CATTCCAAACAGGGATTACT+TGG + chr8_1:70847178-70847197 Msa1211280:intron 40.0%
!! TGTTGTTGGTTCTTTGCATG+TGG - chr8_1:70847263-70847282 None:intergenic 40.0%
ACATGCAAAGAACCAACAAC+AGG + chr8_1:70847262-70847281 Msa1211280:CDS 40.0%
AGAACCAACAACAGGACAAA+TGG + chr8_1:70847270-70847289 Msa1211280:CDS 40.0%
AAAGCCATTTGTCCTGTTGT+TGG - chr8_1:70847277-70847296 None:intergenic 40.0%
! TTACTGTTAATAGGTGCTGC+AGG + chr8_1:70847316-70847335 Msa1211280:CDS 40.0%
GCTATTAACATCAAAGCAGC+AGG - chr8_1:70847526-70847545 None:intergenic 40.0%
TAACGGGACCTTAAAATGGA+TGG - chr8_1:70847802-70847821 None:intergenic 40.0%
ATAACTTAAAGAGCCACGAG+AGG + chr8_1:70848499-70848518 Msa1211280:intron 40.0%
TCTTTGCAGCATACAACAAG+TGG + chr8_1:70849000-70849019 Msa1211280:CDS 40.0%
AACACCAACTTCAAGATACC+TGG + chr8_1:70849148-70849167 Msa1211280:CDS 40.0%
CGAAGATTCACCGAAAAAGA+AGG + chr8_1:70849250-70849269 Msa1211280:CDS 40.0%
AGATTCACCGAAAAAGAAGG+CGG + chr8_1:70849253-70849272 Msa1211280:CDS 40.0%
GTCCTTCAAAGAATTGGTGT+TGG + chr8_1:70849283-70849302 Msa1211280:CDS 40.0%
!!! TTTCGTCGATGTCTGGTTTT+TGG + chr8_1:70849413-70849432 Msa1211280:CDS 40.0%
AATCCAGCTAGTATCAACTG+AGG - chr8_1:70849445-70849464 None:intergenic 40.0%
! GCTGAAACTTTTACTGCTGT+TGG + chr8_1:70849466-70849485 Msa1211280:CDS 40.0%
!!! GTCACTTTTCTATTGTGGCT+TGG + chr8_1:70849543-70849562 Msa1211280:CDS 40.0%
ACAACTTCCAAATCTGCTAC+AGG + chr8_1:70849613-70849632 Msa1211280:CDS 40.0%
CCAATTTCCTGTAGCAGATT+TGG - chr8_1:70849623-70849642 None:intergenic 40.0%
CCAAATCTGCTACAGGAAAT+TGG + chr8_1:70849620-70849639 Msa1211280:CDS 40.0%
CTGCTGCTACTACTACTAAT+AGG - chr8_1:70849763-70849782 None:intergenic 40.0%
CATATTTCTTCCTCCTGACC+AGG + chr8_1:70846203-70846222 Msa1211280:five_prime_UTR 45.0%
ATCTAGATAACACCCTGGTC+AGG - chr8_1:70846219-70846238 None:intergenic 45.0%
GGAGAAAGAGAGACAGAAGA+AGG + chr8_1:70846263-70846282 Msa1211280:CDS 45.0%
GAACCTAAGATCATCCACAG+AGG + chr8_1:70846353-70846372 Msa1211280:CDS 45.0%
ACCAACTTTGCTACCTTGCT+TGG + chr8_1:70846613-70846632 Msa1211280:CDS 45.0%
ACCAAGCAAGGTAGCAAAGT+TGG - chr8_1:70846617-70846636 None:intergenic 45.0%
!! AGAGAAGAAAGCACCAAGCA+AGG - chr8_1:70846629-70846648 None:intergenic 45.0%
CGACTAGGGTTGAATTTCAG+TGG - chr8_1:70846979-70846998 None:intergenic 45.0%
CTTACGGATCAAAGCGACTA+GGG - chr8_1:70846993-70847012 None:intergenic 45.0%
GCACCAACGCTTCAGATTAA+AGG - chr8_1:70847073-70847092 None:intergenic 45.0%
TCAAATGTGAGCTGGGCAAT+TGG + chr8_1:70847490-70847509 Msa1211280:CDS 45.0%
!! GAAAGCATTGGATGCTGAGA+AGG - chr8_1:70847667-70847686 None:intergenic 45.0%
!! AAAGAGCCACGAGAGGTATT+TGG + chr8_1:70848506-70848525 Msa1211280:intron 45.0%
AAAAGGCCAAATACCTCTCG+TGG - chr8_1:70848515-70848534 None:intergenic 45.0%
ATGGTTCATCAGCTGATCCA+TGG + chr8_1:70848975-70848994 Msa1211280:CDS 45.0%
TGTATGCTGCAAAGACTCCA+TGG - chr8_1:70848995-70849014 None:intergenic 45.0%
TGCACCAGGTATCTTGAAGT+TGG - chr8_1:70849155-70849174 None:intergenic 45.0%
! TGTGATGCCGCCTTCTTTTT+CGG - chr8_1:70849263-70849282 None:intergenic 45.0%
!!! GTCGATGTCTGGTTTTTGGT+TGG + chr8_1:70849417-70849436 Msa1211280:CDS 45.0%
! GTTCCTCAGTTGATACTAGC+TGG + chr8_1:70849439-70849458 Msa1211280:CDS 45.0%
!!! GGAGGGTCACTTTTCTATTG+TGG + chr8_1:70849538-70849557 Msa1211280:CDS 45.0%
!! CTTTTCTATTGTGGCTTGGC+AGG + chr8_1:70849547-70849566 Msa1211280:CDS 45.0%
AGTAGTAGTAGCAGCAGCAT+TGG + chr8_1:70849766-70849785 Msa1211280:CDS 45.0%
!!! AATATTTTAAATCAAATAAT+CGG - chr8_1:70848207-70848226 None:intergenic 5.0%
TAGATAACACCCTGGTCAGG+AGG - chr8_1:70846216-70846235 None:intergenic 50.0%
CAGCCTCTGTGGATGATCTT+AGG - chr8_1:70846359-70846378 None:intergenic 50.0%
CTAAGATCATCCACAGAGGC+TGG + chr8_1:70846357-70846376 Msa1211280:CDS 50.0%
CCTTACGGATCAAAGCGACT+AGG - chr8_1:70846994-70847013 None:intergenic 50.0%
! CCTAGTCGCTTTGATCCGTA+AGG + chr8_1:70846991-70847010 Msa1211280:intron 50.0%
TCATCCACCACACTGTGCAA+AGG + chr8_1:70847231-70847250 Msa1211280:CDS 50.0%
CTTTCCTTTGCACAGTGTGG+TGG - chr8_1:70847238-70847257 None:intergenic 50.0%
GCACTTTCCTTTGCACAGTG+TGG - chr8_1:70847241-70847260 None:intergenic 50.0%
! CTAGTGATGGGACTACCACT+TGG - chr8_1:70847595-70847614 None:intergenic 50.0%
GGATCAGCTGATGAACCATC+TGG - chr8_1:70848974-70848993 None:intergenic 50.0%
AAGACAGTGTAGGATGCACC+AGG - chr8_1:70849169-70849188 None:intergenic 50.0%
TCGGTGAATCTTCGGAGCAA+AGG - chr8_1:70849244-70849263 None:intergenic 50.0%
! GACGAAATCGCGCCTTTTCT+TGG - chr8_1:70849400-70849419 None:intergenic 50.0%
GATCATCCACAGAGGCTGGA+AGG + chr8_1:70846361-70846380 Msa1211280:CDS 55.0%
! GTGAGCTGGGCAATTGGTCT+TGG + chr8_1:70847496-70847515 Msa1211280:CDS 55.0%
GCATGACCTTCCAGCCTCTG+TGG - chr8_1:70846370-70846389 None:intergenic 60.0%
GGCGCGATTTCGTCGATGTC+TGG + chr8_1:70849406-70849425 Msa1211280:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70846162 70850000 70846162 ID=Msa1211280;Name=Msa1211280
chr8_1 mRNA 70846162 70850000 70846162 ID=Msa1211280-mRNA-1;Parent=Msa1211280;Name=Msa1211280-mRNA-1;_AED=0.36;_eAED=0.36;_QI=98|1|1|1|1|1|4|202|597
chr8_1 exon 70846162 70846401 70846162 ID=Msa1211280-mRNA-1:exon:23715;Parent=Msa1211280-mRNA-1
chr8_1 exon 70846488 70846705 70846488 ID=Msa1211280-mRNA-1:exon:23716;Parent=Msa1211280-mRNA-1
chr8_1 exon 70847190 70847749 70847190 ID=Msa1211280-mRNA-1:exon:23717;Parent=Msa1211280-mRNA-1
chr8_1 exon 70848925 70850000 70848925 ID=Msa1211280-mRNA-1:exon:23718;Parent=Msa1211280-mRNA-1
chr8_1 five_prime_UTR 70846162 70846259 70846162 ID=Msa1211280-mRNA-1:five_prime_utr;Parent=Msa1211280-mRNA-1
chr8_1 CDS 70846260 70846401 70846260 ID=Msa1211280-mRNA-1:cds;Parent=Msa1211280-mRNA-1
chr8_1 CDS 70846488 70846705 70846488 ID=Msa1211280-mRNA-1:cds;Parent=Msa1211280-mRNA-1
chr8_1 CDS 70847190 70847749 70847190 ID=Msa1211280-mRNA-1:cds;Parent=Msa1211280-mRNA-1
chr8_1 CDS 70848925 70849798 70848925 ID=Msa1211280-mRNA-1:cds;Parent=Msa1211280-mRNA-1
chr8_1 three_prime_UTR 70849799 70850000 70849799 ID=Msa1211280-mRNA-1:three_prime_utr;Parent=Msa1211280-mRNA-1
Gene Sequence

>Msa1211280

ATGGGAGAAAGAGAGACAGAAGAAGGAACAACAATGAAGACAATTGAGAAAGAAAACAACATGGAAAATAGTGAGAAACATGAAACAAATGATGAACCTAAGATCATCCACAGAGGCTGGAAGGTCATGCCTTTCATCATAGGAAATGAAACTTTTGAAAAATTAGGAGCCATTGGAACATTAGCAAACTTGTTGGTCTATCTTACAACTGTATTCAACCTGAAAAACATTACAGCTGCAAACATCATCAATATCTTCAGTGGCAGTACCAACTTTGCTACCTTGCTTGGTGCTTTCTTCTCTGATACATATTTTGGTCGCTACAATACATTAGCATTCTGCACAATCACTTCTTTTCTGGGATTACTTGGAATACAACTTACAGCAGTATTCAAGAATCTTCATCCACCACACTGTGCAAAGGAAAGTGCCACATGCAAAGAACCAACAACAGGACAAATGGCTTTTCTAATATCAGGATTTGGTTTACTGTTAATAGGTGCTGCAGGAGTTAGACCATGTAACTTAGCATTTGGTGTTGATCAATTCAATCCAAAAACAGATTCAGGAAAGAAAGGAATCAATAGTTTCTTCAATTGGTATTTCTTTACCTTCACTTTTGCACAAATGGTATCTTTAACACTAATTGTGTATATACAATCAAATGTGAGCTGGGCAATTGGTCTTGGAATTCCTGCTGCTTTGATGTTAATAGCATGTGTGTTATTTTTCATGGGAGGTAAATTGTATGTAAAAGTTAAACCAAGTGGTAGTCCCATCACTAGTATTTTTCAAGTCTTAGTGGTTGCAATCAAGAAAAGAAGACTTAGTCTACCTTCTCAGCATCCAATGCTTTCACTCTTTGATTATGTGCCACCCATGTCTATTAATTCAAAGCTTCCTTACACATATCAATTCAGGGTATTGGACAAAGCTGCAATGATAACATCACAAGACAAAATAAATCCAGATGGTTCATCAGCTGATCCATGGAGTCTTTGCAGCATACAACAAGTGGAAGAGTTGAAATGTTTGGTGAGAGTTTTACCTATATGGTTTTCAGCAATTTTGTACCATCTAGTTATTGTTCAGCAACACACACTTCTTGTTTTTCAAGCACTTCAATCAAATAGACGAATGGGAAACACCAACTTCAAGATACCTGGTGCATCCTACACTGTCTTCTTAATGTTAAGCATGACATTATGGTTACCAATCTATGATAGAATAGTTGTTCCTTTGCTCCGAAGATTCACCGAAAAAGAAGGCGGCATCACAGTCCTTCAAAGAATTGGTGTTGGAATATTTCTAGGTTTACTAAGCATACTTGTATCAGCATTTGTTGAAACACAAAGAAGACACTTAGCTTTAACTAAGCCTATTGGAATGCAACCAAGAAAAGGCGCGATTTCGTCGATGTCTGGTTTTTGGTTGGTTCCTCAGTTGATACTAGCTGGATTTGCTGAAACTTTTACTGCTGTTGGACAAATTGAATTTTACTATAAACAGTTTCCTGAGAATATGAAAAGCATTGGAGGGTCACTTTTCTATTGTGGCTTGGCAGGTTCTAGTTATTTAAGTGCTTTTCTTGTTTCTGTTGTTCATAGAACAACTTCCAAATCTGCTACAGGAAATTGGTTACCAGAAGATCTTAATAAAGGGAGATTGGAATATTTTTATTACATGATTGCTGGGATAGAAGTCTTGAATTTTGTGTACTTTTTGATGTTTTCCAAATGGTACAAATATAGAGAACCTATTAGTAGTAGTAGCAGCAGCATTGGTAGTCCATGA

Protein sequence

>Msa1211280

MGERETEEGTTMKTIEKENNMENSEKHETNDEPKIIHRGWKVMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLKNITAANIINIFSGSTNFATLLGAFFSDTYFGRYNTLAFCTITSFLGLLGIQLTAVFKNLHPPHCAKESATCKEPTTGQMAFLISGFGLLLIGAAGVRPCNLAFGVDQFNPKTDSGKKGINSFFNWYFFTFTFAQMVSLTLIVYIQSNVSWAIGLGIPAALMLIACVLFFMGGKLYVKVKPSGSPITSIFQVLVVAIKKRRLSLPSQHPMLSLFDYVPPMSINSKLPYTYQFRVLDKAAMITSQDKINPDGSSADPWSLCSIQQVEELKCLVRVLPIWFSAILYHLVIVQQHTLLVFQALQSNRRMGNTNFKIPGASYTVFLMLSMTLWLPIYDRIVVPLLRRFTEKEGGITVLQRIGVGIFLGLLSILVSAFVETQRRHLALTKPIGMQPRKGAISSMSGFWLVPQLILAGFAETFTAVGQIEFYYKQFPENMKSIGGSLFYCGLAGSSYLSAFLVSVVHRTTSKSATGNWLPEDLNKGRLEYFYYMIAGIEVLNFVYFLMFSKWYKYREPISSSSSSIGSP*