Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238740 | MBA0583203.1 | 75.862 | 58 | 14 | 0 | 31 | 88 | 28 | 85 | 2.05e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238740 | sp|Q93W95|PMTD_ARATH | 67.241 | 58 | 19 | 0 | 31 | 88 | 523 | 580 | 1.10e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238740 | A0A7J8P1X6 | 75.862 | 58 | 14 | 0 | 31 | 88 | 28 | 85 | 9.77e-23 | 93.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084380 | Msa1238740 | 0.817580 | 3.063055e-52 | -8.615850e-47 |
| Msa0672690 | Msa1238740 | 0.816105 | 6.563776e-52 | -8.615850e-47 |
| Msa0731940 | Msa1238740 | 0.841237 | 5.368680e-58 | -8.615850e-47 |
| Msa0735170 | Msa1238740 | 0.805764 | 1.140594e-49 | -8.615850e-47 |
| Msa0810220 | Msa1238740 | 0.833161 | 6.250410e-56 | -8.615850e-47 |
| Msa0832340 | Msa1238740 | 0.809905 | 1.501829e-50 | -8.615850e-47 |
| Msa0131770 | Msa1238740 | 0.811250 | 7.691898e-51 | -8.615850e-47 |
| Msa0211150 | Msa1238740 | 0.816138 | 6.453149e-52 | -8.615850e-47 |
| Msa1238740 | Msa1276890 | 0.815374 | 9.551321e-52 | -8.615850e-47 |
| Msa1238740 | Msa1277660 | 0.800018 | 1.754706e-48 | -8.615850e-47 |
| Msa1238740 | Msa1327680 | 0.813748 | 2.187151e-51 | -8.615850e-47 |
| Msa1238740 | Msa1388970 | 0.814811 | 1.273914e-51 | -8.615850e-47 |
| Msa1238740 | Msa1411020 | 0.810754 | 9.848718e-51 | -8.615850e-47 |
| Msa1238740 | Msa1412640 | 0.814418 | 1.556625e-51 | -8.615850e-47 |
| Msa1238740 | Msa1424290 | 0.810092 | 1.368692e-50 | -8.615850e-47 |
| Msa1238740 | Msa1434350 | 0.808054 | 3.739477e-50 | -8.615850e-47 |
| Msa1238740 | Msa1439320 | 0.814214 | 1.726534e-51 | -8.615850e-47 |
| Msa1238740 | Msa1466540 | 0.813590 | 2.369408e-51 | -8.615850e-47 |
| Msa0405130 | Msa1238740 | 0.807136 | 5.858047e-50 | -8.615850e-47 |
| Msa0997370 | Msa1238740 | 0.810621 | 1.052485e-50 | -8.615850e-47 |
| Msa1002000 | Msa1238740 | 0.805686 | 1.184401e-49 | -8.615850e-47 |
| Msa1014540 | Msa1238740 | 0.803964 | 2.711560e-49 | -8.615850e-47 |
| Msa1075540 | Msa1238740 | 0.810257 | 1.261269e-50 | -8.615850e-47 |
| Msa0290870 | Msa1238740 | 0.807178 | 5.738168e-50 | -8.615850e-47 |
| Msa0331000 | Msa1238740 | 0.807648 | 4.561536e-50 | -8.615850e-47 |
| Msa0342750 | Msa1238740 | 0.804173 | 2.452332e-49 | -8.615850e-47 |
| Msa1121480 | Msa1238740 | 0.810358 | 1.199463e-50 | -8.615850e-47 |
| Msa1121490 | Msa1238740 | 0.826296 | 2.933059e-54 | -8.615850e-47 |
| Msa1137570 | Msa1238740 | 0.819849 | 9.359405e-53 | -8.615850e-47 |
| Msa1154280 | Msa1238740 | 0.800109 | 1.681792e-48 | -8.615850e-47 |
| Msa0585230 | Msa1238740 | 0.806556 | 7.767537e-50 | -8.615850e-47 |
| Msa0844490 | Msa1238740 | 0.822596 | 2.176684e-53 | -8.615850e-47 |
| Msa0888130 | Msa1238740 | 0.817228 | 3.677466e-52 | -8.615850e-47 |
| Msa0907950 | Msa1238740 | 0.802155 | 6.415651e-49 | -8.615850e-47 |
| Msa0927380 | Msa1238740 | 0.812881 | 3.391234e-51 | -8.615850e-47 |
| Msa0931520 | Msa1238740 | 0.808240 | 3.412709e-50 | -8.615850e-47 |
| Msa0947660 | Msa1238740 | 0.800969 | 1.122990e-48 | -8.615850e-47 |
| Msa0969520 | Msa1238740 | 0.808423 | 3.120076e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238740 | MtrunA17_Chr8g0350351 | 88.679 | 53 | 6 | 0 | 36 | 88 | 535 | 587 | 9.59e-26 | 99.4 |
| Msa1238740 | MtrunA17_Chr7g0246681 | 79.245 | 53 | 11 | 0 | 36 | 88 | 522 | 574 | 1.32e-23 | 93.2 |
| Msa1238740 | MtrunA17_Chr7g0246701 | 50.000 | 54 | 27 | 0 | 36 | 89 | 560 | 613 | 6.25e-12 | 60.1 |
| Msa1238740 | MtrunA17_Chr4g0055031 | 50.980 | 51 | 25 | 0 | 36 | 86 | 538 | 588 | 8.18e-12 | 59.7 |
| Msa1238740 | MtrunA17_Chr1g0203741 | 49.020 | 51 | 26 | 0 | 36 | 86 | 552 | 602 | 9.95e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238740 | AT4G00740.1 | 67.241 | 58 | 19 | 0 | 31 | 88 | 523 | 580 | 1.12e-20 | 85.1 |
| Msa1238740 | AT4G00740.2 | 67.241 | 58 | 19 | 0 | 31 | 88 | 523 | 580 | 1.12e-20 | 85.1 |
Find 55 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTACACAGCTATGTTAT+TGG | 0.240088 | 8_2:+19490644 | None:intergenic |
| ATCTTTGCCTTGTGTGATCC+AGG | 0.332559 | 8_2:+19490713 | None:intergenic |
| TAGTTGCGACCAAGACCTTC+TGG | 0.339893 | 8_2:-19490683 | Msa1238740:three_prime_UTR |
| ATGTAACCTTGTTGATTTGA+TGG | 0.340943 | 8_2:-19490861 | Msa1238740:CDS |
| TTTAACACCTTACACCTTGT+AGG | 0.357718 | 8_2:+19492489 | None:intergenic |
| TTGAGCTAAAACTTACTTTG+AGG | 0.390583 | 8_2:-19490624 | Msa1238740:three_prime_UTR |
| TGCCCTCTGGCCACAACATT+CGG | 0.393594 | 8_2:+19490828 | None:intergenic |
| GGATGTGGGTGGATCTTTCT+CGG | 0.396606 | 8_2:-19492521 | Msa1238740:CDS |
| TTGGCGGTGGAGTCCGGATG+TGG | 0.411795 | 8_2:-19492536 | Msa1238740:CDS |
| AAATGCTTGGCGGTGGAGTC+CGG | 0.413966 | 8_2:-19492542 | Msa1238740:CDS |
| TTAGGATATTATGAGAGAAA+TGG | 0.426046 | 8_2:-19490522 | Msa1238740:three_prime_UTR |
| CAATGAATTGTTGGAGGGGA+TGG | 0.444598 | 8_2:-19492572 | Msa1238740:CDS |
| GCTACTTTGTCAATTACGTC+CGG | 0.466285 | 8_2:+19490785 | None:intergenic |
| ACTATATACGATAAAGAGCC+TGG | 0.472314 | 8_2:-19490731 | Msa1238740:CDS |
| ATAGCTAATCAATGAATTGT+TGG | 0.479798 | 8_2:-19492581 | Msa1238740:intron |
| GAAGTTATTATATGCATCAA+AGG | 0.482944 | 8_2:-19490590 | Msa1238740:three_prime_UTR |
| GGATGGACGAGGCAAATGCT+TGG | 0.487682 | 8_2:-19492555 | Msa1238740:CDS |
| TACGAGGAGAAATTAATGTT+AGG | 0.488402 | 8_2:-19490540 | Msa1238740:three_prime_UTR |
| CTCGGTTAGATCATCCTACA+AGG | 0.501725 | 8_2:-19492503 | Msa1238740:CDS |
| TGTTATAGTGAGGGATATCC+CGG | 0.502098 | 8_2:-19490804 | Msa1238740:CDS |
| TGGCGGTGGAGTCCGGATGT+GGG | 0.505332 | 8_2:-19492535 | Msa1238740:CDS |
| AAGTTATTATATGCATCAAA+GGG | 0.509889 | 8_2:-19490589 | Msa1238740:three_prime_UTR |
| CTCACTATAACAGTGCCCTC+TGG | 0.516448 | 8_2:+19490815 | None:intergenic |
| CCTCGTATACACAATGAACA+AGG | 0.530316 | 8_2:+19490556 | None:intergenic |
| GAGAAAGATCCACCCACATC+CGG | 0.532655 | 8_2:+19492523 | None:intergenic |
| TTAGAGAGTCCAGAAGGTCT+TGG | 0.533077 | 8_2:+19490674 | None:intergenic |
| TTGCTCATGCCGTGAGGTGG+AGG | 0.535851 | 8_2:-19490757 | Msa1238740:CDS |
| GCTAAAACTTACTTTGAGGA+TGG | 0.541895 | 8_2:-19490620 | Msa1238740:three_prime_UTR |
| AGATAAAATAAAACTAACAT+AGG | 0.549976 | 8_2:+19490449 | None:intergenic |
| TGGACGAGGCAAATGCTTGG+CGG | 0.552742 | 8_2:-19492552 | Msa1238740:CDS |
| ACGAGGCAAATGCTTGGCGG+TGG | 0.553638 | 8_2:-19492549 | Msa1238740:CDS |
| AGAAGGTCTTGGTCGCAACT+AGG | 0.554152 | 8_2:+19490685 | None:intergenic |
| CCTCACGGCATGAGCAACAC+GGG | 0.554656 | 8_2:+19490763 | None:intergenic |
| CTACTTTGTCAATTACGTCC+GGG | 0.556729 | 8_2:+19490786 | None:intergenic |
| GCTAATCAATGAATTGTTGG+AGG | 0.557595 | 8_2:-19492578 | Msa1238740:CDS |
| CGGTGGAGTCCGGATGTGGG+TGG | 0.558668 | 8_2:-19492532 | Msa1238740:CDS |
| AAAACTTACTTTGAGGATGG+TGG | 0.558840 | 8_2:-19490617 | Msa1238740:three_prime_UTR |
| CCTTGTTCATTGTGTATACG+AGG | 0.565130 | 8_2:-19490556 | Msa1238740:three_prime_UTR |
| ACCTCACGGCATGAGCAACA+CGG | 0.569330 | 8_2:+19490762 | None:intergenic |
| CTAATCAATGAATTGTTGGA+GGG | 0.575903 | 8_2:-19492577 | Msa1238740:CDS |
| GTGTTGCTCATGCCGTGAGG+TGG | 0.581042 | 8_2:-19490760 | Msa1238740:CDS |
| GACCGAATGTTGTGGCCAGA+GGG | 0.589060 | 8_2:-19490830 | Msa1238740:CDS |
| ATTGTTGGAGGGGATGGACG+AGG | 0.589081 | 8_2:-19492566 | Msa1238740:CDS |
| TTATATGCATCAAAGGGACG+TGG | 0.600695 | 8_2:-19490583 | Msa1238740:three_prime_UTR |
| TCGAAATAGACCGAATGTTG+TGG | 0.601142 | 8_2:-19490838 | Msa1238740:CDS |
| TGAGAATTAGAGAGTCCAGA+AGG | 0.604181 | 8_2:+19490668 | None:intergenic |
| AGACCGAATGTTGTGGCCAG+AGG | 0.605472 | 8_2:-19490831 | Msa1238740:CDS |
| CAGAGGGCACTGTTATAGTG+AGG | 0.611939 | 8_2:-19490814 | Msa1238740:CDS |
| TAATCAATGAATTGTTGGAG+GGG | 0.614985 | 8_2:-19492576 | Msa1238740:CDS |
| TATAGTAGACCTCCACCTCA+CGG | 0.650723 | 8_2:+19490748 | None:intergenic |
| AGAGGGCACTGTTATAGTGA+GGG | 0.653976 | 8_2:-19490813 | Msa1238740:CDS |
| TAAAGAGCCTGGATCACACA+AGG | 0.661539 | 8_2:-19490720 | Msa1238740:CDS |
| CTCGTATACACAATGAACAA+GGG | 0.666147 | 8_2:+19490557 | None:intergenic |
| TTTCGACCATCAAATCAACA+AGG | 0.677922 | 8_2:+19490855 | None:intergenic |
| CCCGTGTTGCTCATGCCGTG+AGG | 0.691507 | 8_2:-19490763 | Msa1238740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGCTTATAATT+TGG | - | chr8_2:19491179-19491198 | Msa1238740:intron | 10.0% |
| !!! | TTTTTTTTTGCTTATAATTT+GGG | - | chr8_2:19491180-19491199 | Msa1238740:intron | 10.0% |
| !!! | TTTTTTAAAAGATAAATACA+AGG | - | chr8_2:19492310-19492329 | Msa1238740:intron | 10.0% |
| !! | TATAAGAATTTATCATATAA+AGG | + | chr8_2:19492887-19492906 | None:intergenic | 10.0% |
| !!! | TTTTATCTTAGATATATATA+AGG | - | chr8_2:19493582-19493601 | Msa1238740:intron | 10.0% |
| !!! | GTTTTTTTTGCTTATATTAT+GGG | + | chr8_2:19490887-19490906 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTGCTTATATTA+TGG | + | chr8_2:19490888-19490907 | None:intergenic | 15.0% |
| !!! | ATCTTTTTTGCTTATATTTT+GGG | + | chr8_2:19490923-19490942 | None:intergenic | 15.0% |
| !!! | TATCTTTTTTGCTTATATTT+TGG | + | chr8_2:19490924-19490943 | None:intergenic | 15.0% |
| !!! | TAATAAACAAAAGTTTTTCT+TGG | + | chr8_2:19490986-19491005 | None:intergenic | 15.0% |
| !! | AAAACTAAAACATAAGAATT+TGG | + | chr8_2:19491139-19491158 | None:intergenic | 15.0% |
| !! | GTATATATATATTTACATCT+TGG | - | chr8_2:19491212-19491231 | Msa1238740:intron | 15.0% |
| !! | CAAAATAAAAAAAACCTAAA+TGG | + | chr8_2:19491742-19491761 | None:intergenic | 15.0% |
| !!! | TTGTCAAGTTTTATTTTATA+TGG | - | chr8_2:19493534-19493553 | Msa1238740:intron | 15.0% |
| !! | AGATAAAATAAAACTAACAT+AGG | + | chr8_2:19493570-19493589 | None:intergenic | 15.0% |
| !! | TCTTAAACATAGATTCAATA+CGG | + | chr8_2:19490560-19490579 | None:intergenic | 20.0% |
| !! | AATTACACTATCTCTTTAAT+TGG | - | chr8_2:19490702-19490721 | Msa1238740:exon | 20.0% |
| !! | ATTACACTATCTCTTTAATT+GGG | - | chr8_2:19490703-19490722 | Msa1238740:CDS | 20.0% |
| !!! | TTGTTTGGAAAAAGTTTTAT+AGG | + | chr8_2:19491098-19491117 | None:intergenic | 20.0% |
| !!! | ATAGTTTTTTGTGTTTTGTT+TGG | + | chr8_2:19491113-19491132 | None:intergenic | 20.0% |
| !! | TAGCTATTACATACATTAAA+TGG | + | chr8_2:19491422-19491441 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTTTTATTTTGAG+TGG | - | chr8_2:19491744-19491763 | Msa1238740:intron | 20.0% |
| !!! | AGGTTTTTTTTATTTTGAGT+GGG | - | chr8_2:19491745-19491764 | Msa1238740:intron | 20.0% |
| !! | TAAAACGTACATAACTTAAA+TGG | + | chr8_2:19491778-19491797 | None:intergenic | 20.0% |
| !! | AATAGTTGAGAGTTATTTAT+AGG | - | chr8_2:19492176-19492195 | Msa1238740:intron | 20.0% |
| !!! | ATTTTAGGTCTATTAGAATT+AGG | + | chr8_2:19492420-19492439 | None:intergenic | 20.0% |
| !! | GGTATTAAAAAAAATTTGGA+GGG | - | chr8_2:19492470-19492489 | Msa1238740:intron | 20.0% |
| !! | TGGGTATTAAAAAAAAATTG+AGG | - | chr8_2:19492505-19492524 | Msa1238740:CDS | 20.0% |
| !!! | GTTAATTGATAACTTAACTA+TGG | + | chr8_2:19492638-19492657 | None:intergenic | 20.0% |
| !! | GTTAAGTTATCAATTAACTA+TGG | - | chr8_2:19492640-19492659 | Msa1238740:intron | 20.0% |
| !! | TGAAAATACATTATGAATCA+AGG | - | chr8_2:19492986-19493005 | Msa1238740:intron | 20.0% |
| !! | AAGTTATTATATGCATCAAA+GGG | - | chr8_2:19493427-19493446 | Msa1238740:intron | 20.0% |
| !!! | CAAGTTTTATTTTATATGGA+AGG | - | chr8_2:19493538-19493557 | Msa1238740:intron | 20.0% |
| !!! | TAAGACGTCATTTTTATTTG+TGG | - | chr8_2:19490575-19490594 | Msa1238740:three_prime_UTR | 25.0% |
| !!! | AAGACGTCATTTTTATTTGT+GGG | - | chr8_2:19490576-19490595 | Msa1238740:three_prime_UTR | 25.0% |
| ! | GATGTAAAAACAATTCTCAT+TGG | + | chr8_2:19491073-19491092 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | - | chr8_2:19491184-19491203 | Msa1238740:intron | 25.0% |
| ! | ATAGCTAATCAATGAATTGT+TGG | - | chr8_2:19491435-19491454 | Msa1238740:intron | 25.0% |
| !! | TATCATATTTAGGACCATTT+AGG | - | chr8_2:19491725-19491744 | Msa1238740:intron | 25.0% |
| !!! | GGTTTTTTTTATTTTGAGTG+GGG | - | chr8_2:19491746-19491765 | Msa1238740:intron | 25.0% |
| !!! | GTTTTTTTTATTTTGAGTGG+GGG | - | chr8_2:19491747-19491766 | Msa1238740:intron | 25.0% |
| !!! | TTTTTTTTATTTTGAGTGGG+GGG | - | chr8_2:19491748-19491767 | Msa1238740:intron | 25.0% |
| !!! | AATGTATAAGAGTATTCATG+TGG | - | chr8_2:19492087-19492106 | Msa1238740:intron | 25.0% |
| !!! | ATGTATAAGAGTATTCATGT+GGG | - | chr8_2:19492088-19492107 | Msa1238740:intron | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+TGG | + | chr8_2:19492258-19492277 | None:intergenic | 25.0% |
| !!! | TGGGGGTATTAAAAAAAATT+TGG | - | chr8_2:19492466-19492485 | Msa1238740:intron | 25.0% |
| ! | GGGTATTAAAAAAAATTTGG+AGG | - | chr8_2:19492469-19492488 | Msa1238740:intron | 25.0% |
| ! | ATAACTTAACTATGGTTAGT+TGG | + | chr8_2:19492630-19492649 | None:intergenic | 25.0% |
| !! | TTTTCAACTTCAAGTCTTTT+TGG | - | chr8_2:19492691-19492710 | Msa1238740:intron | 25.0% |
| ! | AGATTGAACATATAGATTGA+AGG | + | chr8_2:19493037-19493056 | None:intergenic | 25.0% |
| ! | TAAAACACTTGTATAGAGTA+AGG | + | chr8_2:19493076-19493095 | None:intergenic | 25.0% |
| ! | TACTTTCTTTCACAAAAACA+AGG | - | chr8_2:19493100-19493119 | Msa1238740:intron | 25.0% |
| ! | ACTTTCTTTCACAAAAACAA+GGG | - | chr8_2:19493101-19493120 | Msa1238740:intron | 25.0% |
| ! | AATCAAGTCAATAAGCAATA+GGG | + | chr8_2:19493131-19493150 | None:intergenic | 25.0% |
| ! | GAAGTTATTATATGCATCAA+AGG | - | chr8_2:19493426-19493445 | Msa1238740:intron | 25.0% |
| ! | TTAGGATATTATGAGAGAAA+TGG | - | chr8_2:19493494-19493513 | Msa1238740:intron | 25.0% |
| ACTCGATTTCAGGAATATTT+GGG | - | chr8_2:19490427-19490446 | Msa1238740:three_prime_UTR | 30.0% | |
| CAACCTATTGAATGAAAGAA+TGG | - | chr8_2:19490606-19490625 | Msa1238740:three_prime_UTR | 30.0% | |
| ATGCCATTCTTTCATTCAAT+AGG | + | chr8_2:19490612-19490631 | None:intergenic | 30.0% | |
| CTATCTCTTTAATTGGGAAT+CGG | - | chr8_2:19490709-19490728 | Msa1238740:CDS | 30.0% | |
| TATCTCTTTAATTGGGAATC+GGG | - | chr8_2:19490710-19490729 | Msa1238740:CDS | 30.0% | |
| ATTCGATGCTATAAAGTACA+AGG | + | chr8_2:19490782-19490801 | None:intergenic | 30.0% | |
| ! | AAACAATTCTCATTGGCTAT+TGG | + | chr8_2:19491066-19491085 | None:intergenic | 30.0% |
| CATCTTGGACTATATGTATA+TGG | - | chr8_2:19491227-19491246 | Msa1238740:intron | 30.0% | |
| GAATTTAAACCGAAGAAAAC+TGG | - | chr8_2:19491309-19491328 | Msa1238740:intron | 30.0% | |
| ! | ACCAAATTTCCAGTTTTCTT+CGG | + | chr8_2:19491321-19491340 | None:intergenic | 30.0% |
| AAAGCTAAGTGATCATAATC+TGG | + | chr8_2:19491382-19491401 | None:intergenic | 30.0% | |
| ! | ATTATGATCACTTAGCTTTC+AGG | - | chr8_2:19491383-19491402 | Msa1238740:intron | 30.0% |
| CTAATCAATGAATTGTTGGA+GGG | - | chr8_2:19491439-19491458 | Msa1238740:intron | 30.0% | |
| TAATCAATGAATTGTTGGAG+GGG | - | chr8_2:19491440-19491459 | Msa1238740:intron | 30.0% | |
| !! | GGAGTTTTTGGATATTTTGA+TGG | - | chr8_2:19491592-19491611 | Msa1238740:intron | 30.0% |
| AGTCATGCTGTATCATATTT+AGG | - | chr8_2:19491715-19491734 | Msa1238740:intron | 30.0% | |
| TTATGAATCATAGAATCCCA+GGG | - | chr8_2:19492036-19492055 | Msa1238740:intron | 30.0% | |
| CATTCTACTATGAGTCTTTA+TGG | + | chr8_2:19492120-19492139 | None:intergenic | 30.0% | |
| ACCTAAAATGCTAAAACAAG+AGG | - | chr8_2:19492431-19492450 | Msa1238740:intron | 30.0% | |
| !!! | TCCTCTTGTTTTAGCATTTT+AGG | + | chr8_2:19492435-19492454 | None:intergenic | 30.0% |
| TAAAAAAAAATTGAGGCCCA+TGG | - | chr8_2:19492512-19492531 | Msa1238740:CDS | 30.0% | |
| TATAAGCTGAAAAGAGGTTA+TGG | + | chr8_2:19492808-19492827 | None:intergenic | 30.0% | |
| TGTTCATATAAGCTGAAAAG+AGG | + | chr8_2:19492814-19492833 | None:intergenic | 30.0% | |
| CAATCAAGTCAATAAGCAAT+AGG | + | chr8_2:19493132-19493151 | None:intergenic | 30.0% | |
| !! | ATGTAACCTTGTTGATTTGA+TGG | - | chr8_2:19493155-19493174 | Msa1238740:intron | 30.0% |
| CAATTACACAGCTATGTTAT+TGG | + | chr8_2:19493375-19493394 | None:intergenic | 30.0% | |
| TTGAGCTAAAACTTACTTTG+AGG | - | chr8_2:19493392-19493411 | Msa1238740:intron | 30.0% | |
| TACGAGGAGAAATTAATGTT+AGG | - | chr8_2:19493476-19493495 | Msa1238740:intron | 30.0% | |
| GACTCGATTTCAGGAATATT+TGG | - | chr8_2:19490426-19490445 | Msa1238740:three_prime_UTR | 35.0% | |
| GATTTCAGGAATATTTGGGT+TGG | - | chr8_2:19490431-19490450 | Msa1238740:three_prime_UTR | 35.0% | |
| ATCTCTTTAATTGGGAATCG+GGG | - | chr8_2:19490711-19490730 | Msa1238740:CDS | 35.0% | |
| TATAAAGTACAAGGTGCAAG+TGG | + | chr8_2:19490773-19490792 | None:intergenic | 35.0% | |
| TGCTTATATTATGGGACGAA+GGG | + | chr8_2:19490879-19490898 | None:intergenic | 35.0% | |
| TTGCTTATATTATGGGACGA+AGG | + | chr8_2:19490880-19490899 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGCTATTGGTTA+TGG | + | chr8_2:19491060-19491079 | None:intergenic | 35.0% |
| CTTGGACTATATGTATATGG+AGG | - | chr8_2:19491230-19491249 | Msa1238740:intron | 35.0% | |
| ACCGAAGAAAACTGGAAATT+TGG | - | chr8_2:19491317-19491336 | Msa1238740:intron | 35.0% | |
| AGTGATCATAATCTGGAAAC+TGG | + | chr8_2:19491375-19491394 | None:intergenic | 35.0% | |
| GCTAATCAATGAATTGTTGG+AGG | - | chr8_2:19491438-19491457 | Msa1238740:intron | 35.0% | |
| TTTAACACCTTACACCTTGT+AGG | + | chr8_2:19491530-19491549 | None:intergenic | 35.0% | |
| ! | TACAAGGTGTAAGGTGTTAA+AGG | - | chr8_2:19491529-19491548 | Msa1238740:intron | 35.0% |
| !! | AAGGAGGTATTGTTTCTTGA+TGG | - | chr8_2:19491548-19491567 | Msa1238740:intron | 35.0% |
| !! | TTGATGGTGAATTGAGTAGT+TGG | - | chr8_2:19491564-19491583 | Msa1238740:intron | 35.0% |
| GTTATGAATCATAGAATCCC+AGG | - | chr8_2:19492035-19492054 | Msa1238740:intron | 35.0% | |
| TCACTATGACATTTATCCCT+GGG | + | chr8_2:19492055-19492074 | None:intergenic | 35.0% | |
| ATCACTATGACATTTATCCC+TGG | + | chr8_2:19492056-19492075 | None:intergenic | 35.0% | |
| GGGATAAATGTCATAGTGAT+CGG | - | chr8_2:19492056-19492075 | Msa1238740:intron | 35.0% | |
| TTGGGTGTAACGCATATATA+CGG | + | chr8_2:19492338-19492357 | None:intergenic | 35.0% | |
| TATATATGCGTTACACCCAA+AGG | - | chr8_2:19492338-19492357 | Msa1238740:intron | 35.0% | |
| ! | AGTTGGTTGGTTAGATTGTT+AGG | + | chr8_2:19492613-19492632 | None:intergenic | 35.0% |
| ! | CTTAACTATGGTTAGTTGGT+TGG | + | chr8_2:19492626-19492645 | None:intergenic | 35.0% |
| ATCAATCATTCTCCCAATGA+TGG | + | chr8_2:19492967-19492986 | None:intergenic | 35.0% | |
| TTTCGACCATCAAATCAACA+AGG | + | chr8_2:19493164-19493183 | None:intergenic | 35.0% | |
| ACTATATACGATAAAGAGCC+TGG | - | chr8_2:19493285-19493304 | Msa1238740:intron | 35.0% | |
| ! | GCTAAAACTTACTTTGAGGA+TGG | - | chr8_2:19493396-19493415 | Msa1238740:intron | 35.0% |
| ! | AAAACTTACTTTGAGGATGG+TGG | - | chr8_2:19493399-19493418 | Msa1238740:intron | 35.0% |
| CTCGTATACACAATGAACAA+GGG | + | chr8_2:19493462-19493481 | None:intergenic | 35.0% | |
| ! | TGGACAGAGAGTGTATAGTT+TGG | - | chr8_2:19490451-19490470 | Msa1238740:three_prime_UTR | 40.0% |
| ! | TTGCTTATAATTTGGGACGG+AGG | - | chr8_2:19491187-19491206 | Msa1238740:intron | 40.0% |
| GGAAACTGGCATGTTATAGA+AGG | + | chr8_2:19491361-19491380 | None:intergenic | 40.0% | |
| AGATCATCCTACAAGGTGTA+AGG | - | chr8_2:19491520-19491539 | Msa1238740:intron | 40.0% | |
| ! | AAGGTGTAAGGTGTTAAAGG+AGG | - | chr8_2:19491532-19491551 | Msa1238740:intron | 40.0% |
| ATGGTGAATTGAGTAGTTGG+AGG | - | chr8_2:19491567-19491586 | Msa1238740:intron | 40.0% | |
| TGAATTGAGTAGTTGGAGGA+GGG | - | chr8_2:19491571-19491590 | Msa1238740:intron | 40.0% | |
| !! | TTGATGGTGAGTTGAGTAGT+TGG | - | chr8_2:19491608-19491627 | Msa1238740:intron | 40.0% |
| TAAATGTCATAGTGATCGGC+AGG | - | chr8_2:19492060-19492079 | Msa1238740:intron | 40.0% | |
| AAATGTCATAGTGATCGGCA+GGG | - | chr8_2:19492061-19492080 | Msa1238740:intron | 40.0% | |
| AGTTATTTATAGGCGTGAGC+AGG | - | chr8_2:19492186-19492205 | Msa1238740:intron | 40.0% | |
| GTTATTTATAGGCGTGAGCA+GGG | - | chr8_2:19492187-19492206 | Msa1238740:intron | 40.0% | |
| !! | TTGGCTCTGGGAATGAAAAT+AGG | - | chr8_2:19492232-19492251 | Msa1238740:intron | 40.0% |
| !! | CGCTAGTCATTTTCACCTTT+GGG | + | chr8_2:19492356-19492375 | None:intergenic | 40.0% |
| !! | ACGCTAGTCATTTTCACCTT+TGG | + | chr8_2:19492357-19492376 | None:intergenic | 40.0% |
| !!! | TCTTGCTTTTGGTGTTAGGT+GGG | + | chr8_2:19492394-19492413 | None:intergenic | 40.0% |
| ! | GAATTAGGTCCTCTTGCTTT+TGG | + | chr8_2:19492405-19492424 | None:intergenic | 40.0% |
| TTGTGTAGAGCTTCCATCAT+TGG | - | chr8_2:19492951-19492970 | Msa1238740:intron | 40.0% | |
| TGTGTAGAGCTTCCATCATT+GGG | - | chr8_2:19492952-19492971 | Msa1238740:intron | 40.0% | |
| AGGAAGAAACTCGCAAATCT+AGG | + | chr8_2:19493017-19493036 | None:intergenic | 40.0% | |
| TCGAAATAGACCGAATGTTG+TGG | - | chr8_2:19493178-19493197 | Msa1238740:intron | 40.0% | |
| TGTTATAGTGAGGGATATCC+CGG | - | chr8_2:19493212-19493231 | Msa1238740:intron | 40.0% | |
| CTACTTTGTCAATTACGTCC+GGG | + | chr8_2:19493233-19493252 | None:intergenic | 40.0% | |
| ! | GCTACTTTGTCAATTACGTC+CGG | + | chr8_2:19493234-19493253 | None:intergenic | 40.0% |
| TGAGAATTAGAGAGTCCAGA+AGG | + | chr8_2:19493351-19493370 | None:intergenic | 40.0% | |
| TTATATGCATCAAAGGGACG+TGG | - | chr8_2:19493433-19493452 | Msa1238740:intron | 40.0% | |
| CCTCGTATACACAATGAACA+AGG | + | chr8_2:19493463-19493482 | None:intergenic | 40.0% | |
| CCTTGTTCATTGTGTATACG+AGG | - | chr8_2:19493460-19493479 | Msa1238740:intron | 40.0% | |
| GTACAAGGTGCAAGTGGTAA+TGG | + | chr8_2:19490767-19490786 | None:intergenic | 45.0% | |
| AGTTGAAGCTAATGCCTCTG+TGG | - | chr8_2:19491257-19491276 | Msa1238740:intron | 45.0% | |
| AATGCCTCTGTGGTGAAAAG+TGG | - | chr8_2:19491267-19491286 | Msa1238740:intron | 45.0% | |
| !! | TCTTCCACTTTTCACCACAG+AGG | + | chr8_2:19491274-19491293 | None:intergenic | 45.0% |
| CAATGAATTGTTGGAGGGGA+TGG | - | chr8_2:19491444-19491463 | Msa1238740:intron | 45.0% | |
| CTCGGTTAGATCATCCTACA+AGG | - | chr8_2:19491513-19491532 | Msa1238740:intron | 45.0% | |
| GTGAATTGAGTAGTTGGAGG+AGG | - | chr8_2:19491570-19491589 | Msa1238740:intron | 45.0% | |
| ! | TAGTTGGAGGAGGGAGTTTT+TGG | - | chr8_2:19491580-19491599 | Msa1238740:intron | 45.0% |
| ! | TGGTGAGTTGAGTAGTTGGA+TGG | - | chr8_2:19491612-19491631 | Msa1238740:intron | 45.0% |
| !!! | TTGCTTTTGGTGTTAGGTGG+GGG | + | chr8_2:19492392-19492411 | None:intergenic | 45.0% |
| !!! | CTTGCTTTTGGTGTTAGGTG+GGG | + | chr8_2:19492393-19492412 | None:intergenic | 45.0% |
| !!! | CTCTTGCTTTTGGTGTTAGG+TGG | + | chr8_2:19492395-19492414 | None:intergenic | 45.0% |
| CACCTAACACCAAAAGCAAG+AGG | - | chr8_2:19492393-19492412 | Msa1238740:intron | 45.0% | |
| !!! | GTCCTCTTGCTTTTGGTGTT+AGG | + | chr8_2:19492398-19492417 | None:intergenic | 45.0% |
| ACAAGAGGACAGAGAATGAC+TGG | - | chr8_2:19492446-19492465 | Msa1238740:intron | 45.0% | |
| CAAGAGGACAGAGAATGACT+GGG | - | chr8_2:19492447-19492466 | Msa1238740:intron | 45.0% | |
| AAGAGGACAGAGAATGACTG+GGG | - | chr8_2:19492448-19492467 | Msa1238740:intron | 45.0% | |
| TTGGAGGGCAGTAGTATTAG+TGG | - | chr8_2:19492485-19492504 | Msa1238740:intron | 45.0% | |
| TGGAGGGCAGTAGTATTAGT+GGG | - | chr8_2:19492486-19492505 | Msa1238740:intron | 45.0% | |
| AAAAAATTGAGGCCCATGGC+TGG | - | chr8_2:19492516-19492535 | Msa1238740:CDS | 45.0% | |
| AAAAATTGAGGCCCATGGCT+GGG | - | chr8_2:19492517-19492536 | Msa1238740:CDS | 45.0% | |
| !! | AGAGGGCACTGTTATAGTGA+GGG | - | chr8_2:19493203-19493222 | Msa1238740:intron | 45.0% |
| TATAGTAGACCTCCACCTCA+CGG | + | chr8_2:19493271-19493290 | None:intergenic | 45.0% | |
| TAAAGAGCCTGGATCACACA+AGG | - | chr8_2:19493296-19493315 | Msa1238740:intron | 45.0% | |
| ATCTTTGCCTTGTGTGATCC+AGG | + | chr8_2:19493306-19493325 | None:intergenic | 45.0% | |
| TTAGAGAGTCCAGAAGGTCT+TGG | + | chr8_2:19493345-19493364 | None:intergenic | 45.0% | |
| !! | TTTACATTATTAAATATTAA+TGG | - | chr8_2:19492007-19492026 | Msa1238740:intron | 5.0% |
| GAGAAAGATCCACCCACATC+CGG | + | chr8_2:19491496-19491515 | None:intergenic | 50.0% | |
| GGATGTGGGTGGATCTTTCT+CGG | - | chr8_2:19491495-19491514 | Msa1238740:intron | 50.0% | |
| AGCCTCCGAATTCTTAGGGA+CGG | + | chr8_2:19492213-19492232 | None:intergenic | 50.0% | |
| TCCCTAAGAATTCGGAGGCT+TGG | - | chr8_2:19492213-19492232 | Msa1238740:intron | 50.0% | |
| GCCAAGCCTCCGAATTCTTA+GGG | + | chr8_2:19492217-19492236 | None:intergenic | 50.0% | |
| AGCCAAGCCTCCGAATTCTT+AGG | + | chr8_2:19492218-19492237 | None:intergenic | 50.0% | |
| AGAGGACAGAGAATGACTGG+GGG | - | chr8_2:19492449-19492468 | Msa1238740:intron | 50.0% | |
| AAAATTGAGGCCCATGGCTG+GGG | - | chr8_2:19492518-19492537 | Msa1238740:CDS | 50.0% | |
| GCAAACAGCTCAACAGAGCT+GGG | + | chr8_2:19492548-19492567 | None:intergenic | 50.0% | |
| TGCAAACAGCTCAACAGAGC+TGG | + | chr8_2:19492549-19492568 | None:intergenic | 50.0% | |
| AGTTAGACTAACTCACGCCC+AGG | + | chr8_2:19492586-19492605 | None:intergenic | 50.0% | |
| CTCACTATAACAGTGCCCTC+TGG | + | chr8_2:19493204-19493223 | None:intergenic | 50.0% | |
| !! | CAGAGGGCACTGTTATAGTG+AGG | - | chr8_2:19493202-19493221 | Msa1238740:intron | 50.0% |
| AGAAGGTCTTGGTCGCAACT+AGG | + | chr8_2:19493334-19493353 | None:intergenic | 50.0% | |
| TAGTTGCGACCAAGACCTTC+TGG | - | chr8_2:19493333-19493352 | Msa1238740:intron | 50.0% | |
| ATTGTTGGAGGGGATGGACG+AGG | - | chr8_2:19491450-19491469 | Msa1238740:intron | 55.0% | |
| GGATGGACGAGGCAAATGCT+TGG | - | chr8_2:19491461-19491480 | Msa1238740:intron | 55.0% | |
| TGGACGAGGCAAATGCTTGG+CGG | - | chr8_2:19491464-19491483 | Msa1238740:intron | 55.0% | |
| AAATGCTTGGCGGTGGAGTC+CGG | - | chr8_2:19491474-19491493 | Msa1238740:intron | 55.0% | |
| CAGGGCCGTCCCTAAGAATT+CGG | - | chr8_2:19492205-19492224 | Msa1238740:intron | 55.0% | |
| AGAATTCGGAGGCTTGGCTC+TGG | - | chr8_2:19492219-19492238 | Msa1238740:intron | 55.0% | |
| ! | GAATTCGGAGGCTTGGCTCT+GGG | - | chr8_2:19492220-19492239 | Msa1238740:intron | 55.0% |
| AAATTGAGGCCCATGGCTGG+GGG | - | chr8_2:19492519-19492538 | Msa1238740:CDS | 55.0% | |
| AGACCGAATGTTGTGGCCAG+AGG | - | chr8_2:19493185-19493204 | Msa1238740:intron | 55.0% | |
| GACCGAATGTTGTGGCCAGA+GGG | - | chr8_2:19493186-19493205 | Msa1238740:intron | 55.0% | |
| TGCCCTCTGGCCACAACATT+CGG | + | chr8_2:19493191-19493210 | None:intergenic | 55.0% | |
| ACCTCACGGCATGAGCAACA+CGG | + | chr8_2:19493257-19493276 | None:intergenic | 55.0% | |
| ACGAGGCAAATGCTTGGCGG+TGG | - | chr8_2:19491467-19491486 | Msa1238740:intron | 60.0% | |
| GGCCGTCCCTAAGAATTCGG+AGG | - | chr8_2:19492208-19492227 | Msa1238740:intron | 60.0% | |
| TTGAGCTGTTTGCACCCCCC+AGG | - | chr8_2:19492555-19492574 | Msa1238740:CDS | 60.0% | |
| CCTCACGGCATGAGCAACAC+GGG | + | chr8_2:19493256-19493275 | None:intergenic | 60.0% | |
| ! | GTGTTGCTCATGCCGTGAGG+TGG | - | chr8_2:19493256-19493275 | Msa1238740:intron | 60.0% |
| TTGCTCATGCCGTGAGGTGG+AGG | - | chr8_2:19493259-19493278 | Msa1238740:intron | 60.0% | |
| TTGGCGGTGGAGTCCGGATG+TGG | - | chr8_2:19491480-19491499 | Msa1238740:intron | 65.0% | |
| TGGCGGTGGAGTCCGGATGT+GGG | - | chr8_2:19491481-19491500 | Msa1238740:intron | 65.0% | |
| GACTAACTCACGCCCAGGCC+CGG | + | chr8_2:19492581-19492600 | None:intergenic | 65.0% | |
| ! | CCCGTGTTGCTCATGCCGTG+AGG | - | chr8_2:19493253-19493272 | Msa1238740:intron | 65.0% |
| CGGTGGAGTCCGGATGTGGG+TGG | - | chr8_2:19491484-19491503 | Msa1238740:intron | 70.0% | |
| TTGAGGCCCATGGCTGGGGG+AGG | - | chr8_2:19492522-19492541 | Msa1238740:CDS | 70.0% | |
| GCTGTTTGCACCCCCCAGGC+CGG | - | chr8_2:19492559-19492578 | Msa1238740:CDS | 70.0% | |
| CTGTTTGCACCCCCCAGGCC+GGG | - | chr8_2:19492560-19492579 | Msa1238740:CDS | 70.0% | |
| GCTGGGCCTCCCCCAGCCAT+GGG | + | chr8_2:19492531-19492550 | None:intergenic | 75.0% | |
| AGCTGGGCCTCCCCCAGCCA+TGG | + | chr8_2:19492532-19492551 | None:intergenic | 75.0% | |
| ! | TCACGCCCAGGCCCGGCCTG+GGG | + | chr8_2:19492574-19492593 | None:intergenic | 80.0% |
| ! | CTCACGCCCAGGCCCGGCCT+GGG | + | chr8_2:19492575-19492594 | None:intergenic | 80.0% |
| ! | ACTCACGCCCAGGCCCGGCC+TGG | + | chr8_2:19492576-19492595 | None:intergenic | 80.0% |
| ! | TGCACCCCCCAGGCCGGGCC+TGG | - | chr8_2:19492565-19492584 | Msa1238740:CDS | 85.0% |
| ! | GCACCCCCCAGGCCGGGCCT+GGG | - | chr8_2:19492566-19492585 | Msa1238740:CDS | 85.0% |
| ! | ACGCCCAGGCCCGGCCTGGG+GGG | + | chr8_2:19492572-19492591 | None:intergenic | 85.0% |
| ! | CACGCCCAGGCCCGGCCTGG+GGG | + | chr8_2:19492573-19492592 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 19490418 | 19493620 | 19490418 | ID=Msa1238740;Name=Msa1238740 |
| chr8_2 | mRNA | 19490418 | 19493620 | 19490418 | ID=Msa1238740-mRNA-1;Parent=Msa1238740;Name=Msa1238740-mRNA-1;_AED=0.52;_eAED=0.52;_QI=0|0|0.33|0.33|1|1|3|285|94 |
| chr8_2 | exon | 19490418 | 19490883 | 19490418 | ID=Msa1238740-mRNA-1:exon:7222;Parent=Msa1238740-mRNA-1 |
| chr8_2 | exon | 19492502 | 19492599 | 19492502 | ID=Msa1238740-mRNA-1:exon:7221;Parent=Msa1238740-mRNA-1 |
| chr8_2 | exon | 19493615 | 19493620 | 19493615 | ID=Msa1238740-mRNA-1:exon:7220;Parent=Msa1238740-mRNA-1 |
| chr8_2 | CDS | 19493615 | 19493620 | 19493615 | ID=Msa1238740-mRNA-1:cds;Parent=Msa1238740-mRNA-1 |
| chr8_2 | CDS | 19492502 | 19492599 | 19492502 | ID=Msa1238740-mRNA-1:cds;Parent=Msa1238740-mRNA-1 |
| chr8_2 | CDS | 19490703 | 19490883 | 19490703 | ID=Msa1238740-mRNA-1:cds;Parent=Msa1238740-mRNA-1 |
| chr8_2 | three_prime_UTR | 19490418 | 19490702 | 19490418 | ID=Msa1238740-mRNA-1:three_prime_utr;Parent=Msa1238740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
