AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002000 MtrunA17_Chr6g0485881 95.607 387 16 1 12 397 1 387 0.0 753
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002000 AT3G24630.1 41.463 205 102 8 12 209 10 203 5.23e-29 119
Msa1002000 AT3G24630.2 41.463 205 102 8 12 209 10 203 5.23e-29 119

Find 146 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGTCTTCTCTCTTTC+TGG 0.005612 6_4:+86439881 None:intergenic
TTCTGAGACTAAACTTATTT+TGG 0.076991 6_4:-86438000 Msa1002000:three_prime_UTR
ATCCAATACAAGACTCTATT+TGG 0.158315 6_4:-86438189 Msa1002000:three_prime_UTR
TCAATCTTTGGTAGGATCTT+AGG 0.207375 6_4:+86438224 None:intergenic
TTCAAGATTGCAAATCTCTT+TGG 0.228602 6_4:-86438081 Msa1002000:three_prime_UTR
GGAACTTAAGAAAGTGATTA+AGG 0.234384 6_4:-86440236 Msa1002000:CDS
ATTGCAAAGGATTTGTTAAA+AGG 0.236779 6_4:-86440463 Msa1002000:CDS
TTTGAACACAATTCAGCTTA+TGG 0.266042 6_4:-86440280 Msa1002000:CDS
ATTCCATTAGTTTCAATCTT+TGG 0.272555 6_4:+86438212 None:intergenic
GAAAGTGATTAAGGAGAGTT+TGG 0.281612 6_4:-86440227 Msa1002000:CDS
GCAAATCTCTTTGGGAAGTT+TGG 0.283823 6_4:-86438072 Msa1002000:three_prime_UTR
CCACACTCAACAACTCCTTT+TGG 0.288999 6_4:+86440730 None:intergenic
CCCTACACAAGTTAGCAATA+AGG 0.311630 6_4:+86438106 None:intergenic
GCAAGAAGCTTCGAATAGTA+TGG 0.317136 6_4:-86440398 Msa1002000:CDS
TTCACCTTGTATATATAATA+AGG 0.318783 6_4:-86437551 Msa1002000:three_prime_UTR
CTTCAGAAGTGCTTGTGCTT+TGG 0.319474 6_4:+86440188 None:intergenic
TGCAACAATAGGTTGATAAA+TGG 0.321009 6_4:-86437942 Msa1002000:three_prime_UTR
CATCATCAACTGAAGAATTC+TGG 0.321444 6_4:+86438483 None:intergenic
CCTACACAAGTTAGCAATAA+GGG 0.324395 6_4:+86438107 None:intergenic
ACAATAGGTTTAGCTGCTTC+AGG 0.328588 6_4:+86439129 None:intergenic
GATTGACTTGAGCTTGTAGA+AGG 0.330319 6_4:+86440139 None:intergenic
GGTGAAGATGCTGATATCTA+AGG 0.331132 6_4:+86437568 None:intergenic
CAAGTCAATCTTCTGTTGTT+TGG 0.332774 6_4:-86440126 Msa1002000:CDS
GAGTTTCTCAATCTTGATAT+TGG 0.338989 6_4:-86438251 Msa1002000:three_prime_UTR
CGAAGCCTGTGCTCTCTAAT+AGG 0.344717 6_4:+86439812 None:intergenic
GATGAAATGCTCTTTCTAGA+TGG 0.352127 6_4:+86439252 None:intergenic
AGCTCAGAAGTGTCTTTGTC+TGG 0.357390 6_4:+86438320 None:intergenic
CTACCAAAGATTGAAACTAA+TGG 0.362800 6_4:-86438215 Msa1002000:three_prime_UTR
GGATATACAGCCCTTAGTTA+TGG 0.365845 6_4:-86437780 Msa1002000:three_prime_UTR
TCAAGATTGCAAATCTCTTT+GGG 0.367770 6_4:-86438080 Msa1002000:three_prime_UTR
CTCAAGATCAAGGCGAAATC+AGG 0.377524 6_4:-86439335 Msa1002000:three_prime_UTR
TTGAACCTTCCTTGGTTTGA+AGG 0.381403 6_4:+86439616 None:intergenic
CTTGAAACTACTCATTTCAA+TGG 0.383813 6_4:-86439851 Msa1002000:CDS
TCCATCTTCTTTGCAGCTTG+TGG 0.385624 6_4:-86440569 Msa1002000:CDS
GTCTTTGTCTGGCTCGAAAT+CGG 0.387248 6_4:+86438331 None:intergenic
CAATCTTGTTGCAAGGTTGA+TGG 0.390483 6_4:-86440044 Msa1002000:CDS
TCTGTGACAGAATATTTCTA+AGG 0.402815 6_4:-86440791 Msa1002000:intron
ACAGCCCTTAGTTATGGATC+TGG 0.405068 6_4:-86437774 Msa1002000:three_prime_UTR
CACAAGCACTTCTGAAGGAT+TGG 0.417407 6_4:-86440182 Msa1002000:CDS
ATGGTCAATAAATGATTTGC+TGG 0.418671 6_4:+86438280 None:intergenic
GTTGGTAGTTGAACCTTCCT+TGG 0.422665 6_4:+86439608 None:intergenic
GAAAACTCTTCTCGAGGAAC+CGG 0.426957 6_4:+86439674 None:intergenic
GTGGAAGTCTGAGGAGATAT+AGG 0.427056 6_4:-86440711 Msa1002000:CDS
TTCCTTGGTTTGAAGGAGAA+AGG 0.427524 6_4:+86439623 None:intergenic
GAACTATGCTTTCTTACCTT+CGG 0.429427 6_4:+86439917 None:intergenic
GAGATATGAAGTGCAACAAT+AGG 0.438346 6_4:-86437953 Msa1002000:three_prime_UTR
TGTTTGGTATGACAAACTTT+CGG 0.440918 6_4:-86440110 Msa1002000:CDS
ATCCAAATAGAGTCTTGTAT+TGG 0.447170 6_4:+86438187 None:intergenic
TCAATCCTCGACACACTTCG+CGG 0.449222 6_4:+86439288 None:intergenic
CAAGAAGAAGGAATGAGTTT+CGG 0.458989 6_4:-86438963 Msa1002000:three_prime_UTR
TTTAGAAATCCAAAAGCAAA+AGG 0.462194 6_4:-86439650 Msa1002000:CDS
CAGAAAGAGAGAAGACACTA+AGG 0.462255 6_4:-86439880 Msa1002000:CDS
AATTGTAATGTTCTTTACCT+TGG 0.464078 6_4:+86439410 None:intergenic
ACAGATGGAAATGTTCTTGA+AGG 0.464421 6_4:+86440007 None:intergenic
AATCTTGTTGCAAGGTTGAT+GGG 0.467441 6_4:-86440043 Msa1002000:CDS
GGATCATCACATGTCACAAA+TGG 0.467560 6_4:+86440751 None:intergenic
GGATAATATTTGTGCAATGT+TGG 0.470489 6_4:-86437979 Msa1002000:three_prime_UTR
CATCAACCTTGCAACAAGAT+TGG 0.470581 6_4:+86440045 None:intergenic
CCCTTATTGCTAACTTGTGT+AGG 0.479938 6_4:-86438107 Msa1002000:three_prime_UTR
CAAATCCTTTGCAATATCAT+CGG 0.484517 6_4:+86440471 None:intergenic
CTAACTGTGATGACTCTTGA+AGG 0.485315 6_4:+86438135 None:intergenic
ATCTTCTTTGCAGCTTGTGG+AGG 0.488367 6_4:-86440566 Msa1002000:CDS
ATTGATGCAAATGTGAATGA+TGG 0.489421 6_4:-86440331 Msa1002000:CDS
CAACATGAGAAAAGAGATGA+TGG 0.491361 6_4:-86439589 Msa1002000:exon
GTCAAATTCTCACAAAATGA+AGG 0.492656 6_4:-86440689 Msa1002000:CDS
AAAGAAGAGAAGGTATCAAA+AGG 0.495584 6_4:-86440613 Msa1002000:CDS
TCCACAAGCTGCAAAGAAGA+TGG 0.495903 6_4:+86440568 None:intergenic
CCGATCAAGATCGGAAGGAC+TGG 0.502887 6_4:+86437643 None:intergenic
TGCACGTAGTCAGCCACATC+AGG 0.507609 6_4:+86437615 None:intergenic
ACAACCCAGATCCATAACTA+AGG 0.507724 6_4:+86437769 None:intergenic
CAGCCCTTAGTTATGGATCT+GGG 0.510574 6_4:-86437773 Msa1002000:three_prime_UTR
CCTTATTGCTAACTTGTGTA+GGG 0.510663 6_4:-86438106 Msa1002000:three_prime_UTR
CATTAGTTTCAATCTTTGGT+AGG 0.513835 6_4:+86438216 None:intergenic
TAAGACAAAGTGCCGAAAGC+CGG 0.516544 6_4:-86440665 Msa1002000:CDS
ATGGAATGTGGAACTGTGGT+TGG 0.517006 6_4:-86437923 Msa1002000:three_prime_UTR
TTTCTCCTTCAAACCAAGGA+AGG 0.517620 6_4:-86439621 Msa1002000:CDS
CACAAAACCAAAGACACAAA+AGG 0.518586 6_4:-86439211 Msa1002000:three_prime_UTR
CTGATTAGACTGTTTAGATG+TGG 0.518894 6_4:+86437722 None:intergenic
CGAGGTTTCATGAGTACAAT+CGG 0.522887 6_4:+86439734 None:intergenic
TCTCAGAAAACCGATACAAA+AGG 0.524589 6_4:-86439388 Msa1002000:three_prime_UTR
ACCTCTAGTCTTATTTGCAT+AGG 0.528727 6_4:+86438857 None:intergenic
GAAAGTACAGATTTGAAGAT+CGG 0.534078 6_4:-86437700 Msa1002000:three_prime_UTR
CAGCTTGTGGAGGTCTCTAG+AGG 0.534580 6_4:-86440556 Msa1002000:CDS
TAGTCCTTATTATATATACA+AGG 0.535662 6_4:+86437547 None:intergenic
GTGGCAAAAGCTCAAGATCA+AGG 0.536217 6_4:-86439345 Msa1002000:three_prime_UTR
GTAGTCCTATTAGAGAGCAC+AGG 0.539680 6_4:-86439817 Msa1002000:CDS
TTTGCAGATAATTGCGAGGA+GGG 0.540057 6_4:-86438506 Msa1002000:intron
TGGAACTGTGGTTGGAGGCA+TGG 0.542412 6_4:-86437915 Msa1002000:three_prime_UTR
CAGATGGAAATGTTCTTGAA+GGG 0.547681 6_4:+86440008 None:intergenic
TCCTTCCGATCTTGATCGGA+CGG 0.552448 6_4:-86437639 Msa1002000:three_prime_UTR
CCAGTCCTTCCGATCTTGAT+CGG 0.559187 6_4:-86437643 Msa1002000:three_prime_UTR
CAAAGCACAAGCACTTCTGA+AGG 0.559925 6_4:-86440187 Msa1002000:CDS
GTCTCTAGAGATGCTTCGTA+AGG 0.563353 6_4:-86440422 Msa1002000:CDS
TATGGATCTGGGTTGTGTGC+GGG 0.564068 6_4:-86437762 Msa1002000:three_prime_UTR
ACGAGCTTCCTCAGCAAGGA+TGG 0.565299 6_4:+86438427 None:intergenic
CAGGACCGTCCGATCAAGAT+CGG 0.569220 6_4:+86437634 None:intergenic
AAAGTACCAATCTTGTTGCA+AGG 0.570805 6_4:-86440051 Msa1002000:CDS
CAACTCTTCTATCCTTCCTG+TGG 0.571879 6_4:+86437515 None:intergenic
TAAACAAGACAAAGAAGAGA+AGG 0.573687 6_4:-86440623 Msa1002000:CDS
TTCCTTTCTCCTTCAAACCA+AGG 0.576989 6_4:-86439625 Msa1002000:CDS
GTGAAGATGCTGATATCTAA+GGG 0.579426 6_4:+86437569 None:intergenic
AGATGGAAATGTTCTTGAAG+GGG 0.581235 6_4:+86440009 None:intergenic
CAAGAAGCTTCGAATAGTAT+GGG 0.582027 6_4:-86440397 Msa1002000:CDS
ATGATTGAGTCGTGGTCTAG+AGG 0.582241 6_4:-86440514 Msa1002000:CDS
ATATGATGTGAAAGAAATCA+AGG 0.588240 6_4:-86439502 Msa1002000:three_prime_UTR
ATTGACTTGAGCTTGTAGAA+GGG 0.591382 6_4:+86440140 None:intergenic
ACAAAAGGTTAACAGTTCAA+AGG 0.591951 6_4:-86439196 Msa1002000:three_prime_UTR
ATTGCTGACACCGTCTGTAT+CGG 0.594229 6_4:-86438359 Msa1002000:three_prime_UTR
GAAACAAGTTTCACTGACGC+TGG 0.594603 6_4:+86438397 None:intergenic
TTGATCGGACGGTCCTGATG+TGG 0.597073 6_4:-86437628 Msa1002000:three_prime_UTR
GGTGTGTCAATCTCGAACAC+AGG 0.598187 6_4:+86439938 None:intergenic
CTAAAGGAAAACTCTTCTCG+AGG 0.598786 6_4:+86439668 None:intergenic
ATAGGTTGATAAATGGAATG+TGG 0.600587 6_4:-86437935 Msa1002000:three_prime_UTR
ACCGTCCGATCAAGATCGGA+AGG 0.601177 6_4:+86437638 None:intergenic
TCTAGAGGTGTGAGGTACGA+TGG 0.603601 6_4:-86440499 Msa1002000:CDS
TTATGGATCTGGGTTGTGTG+CGG 0.610047 6_4:-86437763 Msa1002000:three_prime_UTR
CTCTTCAAGTAGTTGTAGAG+AGG 0.610288 6_4:-86440257 Msa1002000:CDS
GAATGTGGAACTGTGGTTGG+AGG 0.612560 6_4:-86437920 Msa1002000:three_prime_UTR
AGAAAGAGAGAAGACACTAA+GGG 0.612920 6_4:-86439879 Msa1002000:CDS
GATTGAGAAACTCATCTGCA+TGG 0.613355 6_4:+86438261 None:intergenic
CAACCCAGATCCATAACTAA+GGG 0.615587 6_4:+86437770 None:intergenic
AAAATCCGATGATATTGCAA+AGG 0.617942 6_4:-86440476 Msa1002000:CDS
CAAGGCTGTTGAAAGCAAGA+AGG 0.619477 6_4:-86439484 Msa1002000:three_prime_UTR
TCGATTGAAGAGAAGACAAG+AGG 0.624969 6_4:-86440374 Msa1002000:CDS
CAGAAAACCGATACAAAAGG+AGG 0.626337 6_4:-86439385 Msa1002000:three_prime_UTR
GTGACATGTGATGATCCAAA+AGG 0.628008 6_4:-86440745 Msa1002000:CDS
CCAAAAGGAGTTGTTGAGTG+TGG 0.631426 6_4:-86440730 Msa1002000:CDS
ACCTATGCAAATAAGACTAG+AGG 0.635482 6_4:-86438858 Msa1002000:intron
CTACACAAGTTAGCAATAAG+GGG 0.636387 6_4:+86438108 None:intergenic
GAAAGCCGCGAAGTGTGTCG+AGG 0.637298 6_4:-86439293 Msa1002000:three_prime_UTR
CGATTGTACTCATGAAACCT+CGG 0.638305 6_4:-86439733 Msa1002000:CDS
AAATGATACCATCCTTGCTG+AGG 0.642227 6_4:-86438435 Msa1002000:three_prime_UTR
TTGTTGAGTGTGGAAGTCTG+AGG 0.647195 6_4:-86440720 Msa1002000:CDS
AGGACTAAGAAATTGACCAC+AGG 0.651037 6_4:-86437531 Msa1002000:three_prime_UTR
GGTTTCAAAAGCTAAAATTG+TGG 0.654649 6_4:-86439364 Msa1002000:three_prime_UTR
TGTCACGAGCTTCCTCAGCA+AGG 0.661150 6_4:+86438423 None:intergenic
ATCGGTTTCACCGATACAGA+CGG 0.665581 6_4:+86438349 None:intergenic
ATAAATGGAATGTGGAACTG+TGG 0.666233 6_4:-86437927 Msa1002000:three_prime_UTR
CTAAGAAATTGACCACAGGA+AGG 0.671875 6_4:-86437527 Msa1002000:three_prime_UTR
TGAACAACATGATTGAGTCG+TGG 0.687574 6_4:-86440522 Msa1002000:CDS
TAAGGGATTTGAAACGTGTG+CGG 0.700220 6_4:+86437586 None:intergenic
GTTCGAGATTGACACACCGA+AGG 0.719145 6_4:-86439933 Msa1002000:CDS
AGTCGTGGTCTAGAGGTGTG+AGG 0.724136 6_4:-86440507 Msa1002000:CDS
GGTTTCATGAGTACAATCGG+TGG 0.732087 6_4:+86439737 None:intergenic
ACAAGTTTCACTGACGCTGG+TGG 0.738203 6_4:+86438400 None:intergenic
AGTAACAGAAGATCTCATCG+TGG 0.778770 6_4:-86438895 Msa1002000:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTAATTAAATTAAA+AGG + chr6_4:86438829-86438848 None:intergenic 0.0%
!! TAGATATAAATAGTAAATTT+AGG + chr6_4:86437615-86437634 None:intergenic 10.0%
!! AATCATATTGTATAAATATT+TGG + chr6_4:86438275-86438294 None:intergenic 10.0%
!! AATATAGATTATAGTTTATA+GGG + chr6_4:86438351-86438370 None:intergenic 10.0%
!! AAATATAGATTATAGTTTAT+AGG + chr6_4:86438352-86438371 None:intergenic 10.0%
!! TTCTTTAATTAAAATTCATA+TGG + chr6_4:86438566-86438585 None:intergenic 10.0%
!! AAATTAATTAAATTAAAAGG+AGG + chr6_4:86438826-86438845 None:intergenic 10.0%
!! AAAGCATAAAATAATATATT+TGG + chr6_4:86439121-86439140 None:intergenic 10.0%
!! ATTAATCTTAAAGTTAATAC+GGG + chr6_4:86437815-86437834 None:intergenic 15.0%
!! GATTAATCTTAAAGTTAATA+CGG + chr6_4:86437816-86437835 None:intergenic 15.0%
!!! AAGAAAATGTCTTTTTTTAT+GGG - chr6_4:86437933-86437952 Msa1002000:three_prime_UTR 15.0%
!! CATTTAATTAATGATGTATA+CGG - chr6_4:86438378-86438397 Msa1002000:three_prime_UTR 15.0%
!! CATTTATTAAATGATATATG+TGG + chr6_4:86438417-86438436 None:intergenic 15.0%
!! TTATTTATAATAGTGATCAT+AGG - chr6_4:86438456-86438475 Msa1002000:three_prime_UTR 15.0%
!! TATTTATAATAGTGATCATA+GGG - chr6_4:86438457-86438476 Msa1002000:three_prime_UTR 15.0%
!! AATCAATGATGTAAATATAA+CGG + chr6_4:86438757-86438776 None:intergenic 15.0%
!! AATCAATGATATGAATATAA+CGG + chr6_4:86438983-86439002 None:intergenic 15.0%
!!! ATATTTTTTTAGTGTGTTTT+TGG - chr6_4:86439765-86439784 Msa1002000:CDS 15.0%
!! GAAATTTCATAAAATAACTT+AGG + chr6_4:86440289-86440308 None:intergenic 15.0%
!!! TTTATTTGTCTCTAAATTTT+CGG + chr6_4:86440459-86440478 None:intergenic 15.0%
!!! TTATATATTTTGAGACATTT+TGG - chr6_4:86443297-86443316 Msa1002000:intron 15.0%
!!! AGAGAATTTATTTTGAATAC+GGG + chr6_4:86437792-86437811 None:intergenic 20.0%
!!! GAGAGAATTTATTTTGAATA+CGG + chr6_4:86437793-86437812 None:intergenic 20.0%
!!! CAAGAAAATGTCTTTTTTTA+TGG - chr6_4:86437932-86437951 Msa1002000:three_prime_UTR 20.0%
!! AAACTACTTGTATAAAGATT+TGG + chr6_4:86438154-86438173 None:intergenic 20.0%
!! ATCTTTATACAAGTAGTTTA+AGG - chr6_4:86438155-86438174 Msa1002000:three_prime_UTR 20.0%
!!! TGCGCATATATTAAATTTTT+AGG - chr6_4:86438182-86438201 Msa1002000:three_prime_UTR 20.0%
!! TATAAATATTTGGTATGTTG+AGG + chr6_4:86438265-86438284 None:intergenic 20.0%
!! ATACAATATGATTTACGATA+TGG - chr6_4:86438282-86438301 Msa1002000:three_prime_UTR 20.0%
!! TATATGTGAACAACAAAATT+TGG + chr6_4:86438531-86438550 None:intergenic 20.0%
!! AGATTATGAAAGTGAAAAAT+GGG + chr6_4:86439318-86439337 None:intergenic 20.0%
!! AAGATTATGAAAGTGAAAAA+TGG + chr6_4:86439319-86439338 None:intergenic 20.0%
!! AAACTTCTCAAAATATTTCT+GGG - chr6_4:86439547-86439566 Msa1002000:three_prime_UTR 20.0%
!!! ATCAGTTTTTGATGAATATT+AGG - chr6_4:86439854-86439873 Msa1002000:CDS 20.0%
!! AAACATTAGCAAATTGTTAA+TGG - chr6_4:86439982-86440001 Msa1002000:CDS 20.0%
!! ATAGAGACTGATTAATATAA+TGG - chr6_4:86440091-86440110 Msa1002000:CDS 20.0%
!!! TCATTTTTTTTTTGTCTCTA+TGG - chr6_4:86442003-86442022 Msa1002000:intron 20.0%
!!! TAAATTTCTAAAATTGTCAC+TGG - chr6_4:86442263-86442282 Msa1002000:intron 20.0%
!! TTATACTATTTATCCAAACA+GGG + chr6_4:86442300-86442319 None:intergenic 20.0%
!! ATTATACTATTTATCCAAAC+AGG + chr6_4:86442301-86442320 None:intergenic 20.0%
!! CATATAAGTTCTTATGTATA+TGG - chr6_4:86442347-86442366 Msa1002000:intron 20.0%
!! TTCACCTTGTATATATAATA+AGG - chr6_4:86443547-86443566 Msa1002000:intron 20.0%
!! TAGTCCTTATTATATATACA+AGG + chr6_4:86443554-86443573 None:intergenic 20.0%
! GATATTGCATTATTTATGCA+GGG - chr6_4:86437683-86437702 Msa1002000:three_prime_UTR 25.0%
! ATATTGCATTATTTATGCAG+GGG - chr6_4:86437684-86437703 Msa1002000:three_prime_UTR 25.0%
!!! AAATGTCTTTTTTTATGGGT+TGG - chr6_4:86437937-86437956 Msa1002000:three_prime_UTR 25.0%
! ACTTGTATAAAGATTTGGAA+TGG + chr6_4:86438149-86438168 None:intergenic 25.0%
!!! AGCTTAAAGATTAGTTTTTG+TGG + chr6_4:86438914-86438933 None:intergenic 25.0%
! ACAAAAACTAATCTTTAAGC+TGG - chr6_4:86438913-86438932 Msa1002000:three_prime_UTR 25.0%
! AATCTTTAAGCTGGATAAAA+TGG - chr6_4:86438922-86438941 Msa1002000:three_prime_UTR 25.0%
! AGTGAAAAATGGGAAAAAAT+GGG + chr6_4:86439308-86439327 None:intergenic 25.0%
! AAGTGAAAAATGGGAAAAAA+TGG + chr6_4:86439309-86439328 None:intergenic 25.0%
! GAAACTTCTCAAAATATTTC+TGG - chr6_4:86439546-86439565 Msa1002000:three_prime_UTR 25.0%
!! TTTTTCATGAATTTCTCAAG+TGG - chr6_4:86439609-86439628 Msa1002000:CDS 25.0%
!! TTTTCATGAATTTCTCAAGT+GGG - chr6_4:86439610-86439629 Msa1002000:CDS 25.0%
! AACAGCTGAAAGAAATATAA+AGG - chr6_4:86439681-86439700 Msa1002000:CDS 25.0%
! ACAGCTGAAAGAAATATAAA+GGG - chr6_4:86439682-86439701 Msa1002000:CDS 25.0%
!! GCTTCTTTTTATGTGATTTT+TGG - chr6_4:86439736-86439755 Msa1002000:CDS 25.0%
!!! CTTTTTGTTTGTTTCTTTCT+AGG - chr6_4:86440047-86440066 Msa1002000:CDS 25.0%
!!! TATAATGGTTTTTGTTTCAG+TGG - chr6_4:86440106-86440125 Msa1002000:CDS 25.0%
!!! ATAATGGTTTTTGTTTCAGT+GGG - chr6_4:86440107-86440126 Msa1002000:CDS 25.0%
!!! ATTGCAAAGGATTTGTTAAA+AGG - chr6_4:86440635-86440654 Msa1002000:CDS 25.0%
!!! TTTTGCTTTTGGATTTCTAA+AGG + chr6_4:86441449-86441468 None:intergenic 25.0%
! TTTAGAAATCCAAAAGCAAA+AGG - chr6_4:86441448-86441467 Msa1002000:intron 25.0%
! ATCCAAAAAGTTTATCAAAG+AGG - chr6_4:86441542-86441561 Msa1002000:intron 25.0%
! ATATGATGTGAAAGAAATCA+AGG - chr6_4:86441596-86441615 Msa1002000:intron 25.0%
! AATTGTAATGTTCTTTACCT+TGG + chr6_4:86441691-86441710 None:intergenic 25.0%
! ATGACAGTAAAACTTACAAT+AGG + chr6_4:86441987-86442006 None:intergenic 25.0%
! TATCTTGCATAAAAGAGTTT+AGG - chr6_4:86442052-86442071 Msa1002000:intron 25.0%
! AATGAATTGAAACTCATTGA+AGG + chr6_4:86442086-86442105 None:intergenic 25.0%
! GAAAAATTAAAGCAAGAAGA+AGG - chr6_4:86442123-86442142 Msa1002000:intron 25.0%
! TATCATCACACTGAATAAAT+TGG - chr6_4:86442544-86442563 Msa1002000:intron 25.0%
!! ATTCCATTAGTTTCAATCTT+TGG + chr6_4:86442889-86442908 None:intergenic 25.0%
!!! TTCTGAGACTAAACTTATTT+TGG - chr6_4:86443098-86443117 Msa1002000:intron 25.0%
!! GAAGTAGAAAACATGATTTT+AGG - chr6_4:86443240-86443259 Msa1002000:intron 25.0%
GGATATTGCATTATTTATGC+AGG - chr6_4:86437682-86437701 Msa1002000:three_prime_UTR 30.0%
!!! CGGGAGAGATATTTTATTTT+TGG + chr6_4:86437773-86437792 None:intergenic 30.0%
! TGTATAAAGATTTGGAATGG+AGG + chr6_4:86438146-86438165 None:intergenic 30.0%
! GATTCACACGAAAAAAGTAT+AGG + chr6_4:86438648-86438667 None:intergenic 30.0%
! AGGAGGTTTTCTTGTAAATT+TGG + chr6_4:86438809-86438828 None:intergenic 30.0%
!! AGGGTGTTTTCTTGTAATTT+TGG + chr6_4:86439035-86439054 None:intergenic 30.0%
AAAAAACATACAAAGAGGTG+TGG + chr6_4:86439225-86439244 None:intergenic 30.0%
!!! ACACCTCTTTGTATGTTTTT+TGG - chr6_4:86439224-86439243 Msa1002000:three_prime_UTR 30.0%
GTTCCAAAAAACATACAAAG+AGG + chr6_4:86439230-86439249 None:intergenic 30.0%
AACACAACATCATTTGTACT+TGG - chr6_4:86439275-86439294 Msa1002000:three_prime_UTR 30.0%
! AAAATGGGAAAAAATGGGTT+TGG + chr6_4:86439303-86439322 None:intergenic 30.0%
CTTAAAAAAACAGCAAGTGA+TGG + chr6_4:86439401-86439420 None:intergenic 30.0%
! CTTTTTCTCATGGTTTTTTG+AGG - chr6_4:86439640-86439659 Msa1002000:CDS 30.0%
!!! AGTTTTGTTTCATGAAACCA+TGG - chr6_4:86439707-86439726 Msa1002000:CDS 30.0%
TAAAAAGAAGCTGTAATCCA+TGG + chr6_4:86439727-86439746 None:intergenic 30.0%
!! TGCTGCTTTAAGAATCTATT+TGG - chr6_4:86439959-86439978 Msa1002000:CDS 30.0%
! TTTGTTTGTTTCTTTCTAGG+TGG - chr6_4:86440050-86440069 Msa1002000:CDS 30.0%
! TTGTTTGTTTCTTTCTAGGT+GGG - chr6_4:86440051-86440070 Msa1002000:CDS 30.0%
! TCTGTGACAGAATATTTCTA+AGG - chr6_4:86440307-86440326 Msa1002000:CDS 30.0%
GTCAAATTCTCACAAAATGA+AGG - chr6_4:86440409-86440428 Msa1002000:CDS 30.0%
TAAACAAGACAAAGAAGAGA+AGG - chr6_4:86440475-86440494 Msa1002000:CDS 30.0%
!! AAAGAAGAGAAGGTATCAAA+AGG - chr6_4:86440485-86440504 Msa1002000:CDS 30.0%
AAAATCCGATGATATTGCAA+AGG - chr6_4:86440622-86440641 Msa1002000:CDS 30.0%
CAAATCCTTTGCAATATCAT+CGG + chr6_4:86440630-86440649 None:intergenic 30.0%
ATTGATGCAAATGTGAATGA+TGG - chr6_4:86440767-86440786 Msa1002000:CDS 30.0%
TTTGAACACAATTCAGCTTA+TGG - chr6_4:86440818-86440837 Msa1002000:intron 30.0%
GGAACTTAAGAAAGTGATTA+AGG - chr6_4:86440862-86440881 Msa1002000:intron 30.0%
TGTTTGGTATGACAAACTTT+CGG - chr6_4:86440988-86441007 Msa1002000:intron 30.0%
! TTTTCCTTCCTTGAAAAAGT+TGG + chr6_4:86441028-86441047 None:intergenic 30.0%
ATCTGTTATGCAAAAACAGT+CGG - chr6_4:86441108-86441127 Msa1002000:intron 30.0%
CTTGAAACTACTCATTTCAA+TGG - chr6_4:86441247-86441266 Msa1002000:intron 30.0%
! CTCCTCTTTGATAAACTTTT+TGG + chr6_4:86441547-86441566 None:intergenic 30.0%
!! TTTGAAACCTCCTTTTGTAT+CGG + chr6_4:86441723-86441742 None:intergenic 30.0%
GGTTTCAAAAGCTAAAATTG+TGG - chr6_4:86441734-86441753 Msa1002000:intron 30.0%
ACAAAAGGTTAACAGTTCAA+AGG - chr6_4:86441902-86441921 Msa1002000:intron 30.0%
AATTCATTATTCTTGTGCAC+AGG - chr6_4:86442098-86442117 Msa1002000:intron 30.0%
! ATGGTCAATAAATGATTTGC+TGG + chr6_4:86442821-86442840 None:intergenic 30.0%
GAGTTTCTCAATCTTGATAT+TGG - chr6_4:86442847-86442866 Msa1002000:intron 30.0%
! CATTAGTTTCAATCTTTGGT+AGG + chr6_4:86442885-86442904 None:intergenic 30.0%
CTACCAAAGATTGAAACTAA+TGG - chr6_4:86442883-86442902 Msa1002000:intron 30.0%
ATCCAATACAAGACTCTATT+TGG - chr6_4:86442909-86442928 Msa1002000:intron 30.0%
! ATCCAAATAGAGTCTTGTAT+TGG + chr6_4:86442914-86442933 None:intergenic 30.0%
TTCAAGATTGCAAATCTCTT+TGG - chr6_4:86443017-86443036 Msa1002000:intron 30.0%
TCAAGATTGCAAATCTCTTT+GGG - chr6_4:86443018-86443037 Msa1002000:intron 30.0%
GGATAATATTTGTGCAATGT+TGG - chr6_4:86443119-86443138 Msa1002000:intron 30.0%
!! TGCAACAATAGGTTGATAAA+TGG - chr6_4:86443156-86443175 Msa1002000:intron 30.0%
!! ATAGGTTGATAAATGGAATG+TGG - chr6_4:86443163-86443182 Msa1002000:intron 30.0%
! GTAGAAAACATGATTTTAGG+TGG - chr6_4:86443243-86443262 Msa1002000:intron 30.0%
!!! GATTTTAGGTGGATTAATTG+AGG - chr6_4:86443254-86443273 Msa1002000:intron 30.0%
! GAAAGTACAGATTTGAAGAT+CGG - chr6_4:86443398-86443417 Msa1002000:intron 30.0%
AAACATTATCCCACCAAGTA+TGG - chr6_4:86437983-86438002 Msa1002000:three_prime_UTR 35.0%
ATCAACAATCCAACCATACT+TGG + chr6_4:86437999-86438018 None:intergenic 35.0%
AGGAAGTAAGAGTTAGGATT+TGG + chr6_4:86438126-86438145 None:intergenic 35.0%
ACATATTAAGCGTAGAGAAG+TGG - chr6_4:86438215-86438234 Msa1002000:three_prime_UTR 35.0%
GTAGAGAAGTGGACATATTA+CGG - chr6_4:86438226-86438245 Msa1002000:three_prime_UTR 35.0%
CTCAACACATTATCTTCGAT+TGG - chr6_4:86438485-86438504 Msa1002000:three_prime_UTR 35.0%
CGACACTTTATAGGATTGTT+CGG + chr6_4:86438709-86438728 None:intergenic 35.0%
GAAAGCTTTCGACACTTTAT+AGG + chr6_4:86438718-86438737 None:intergenic 35.0%
!!! TGATGGTGTGTTTGGTTTTT+TGG + chr6_4:86439384-86439403 None:intergenic 35.0%
AAGAAATTCAGATCCAAGTG+GGG + chr6_4:86439490-86439509 None:intergenic 35.0%
GAAGAAATTCAGATCCAAGT+GGG + chr6_4:86439491-86439510 None:intergenic 35.0%
AGAAGAAATTCAGATCCAAG+TGG + chr6_4:86439492-86439511 None:intergenic 35.0%
!! GGGTCATTTTCTTTTTCTCA+TGG - chr6_4:86439630-86439649 Msa1002000:CDS 35.0%
!!! TTCTCATGGTTTTTTGAGGT+TGG - chr6_4:86439644-86439663 Msa1002000:CDS 35.0%
GACAAATTGTAAGATCCAAG+AGG - chr6_4:86440160-86440179 Msa1002000:CDS 35.0%
! TTTGTCTCTAAATTTTCGGC+CGG + chr6_4:86440455-86440474 None:intergenic 35.0%
CAAGAAGCTTCGAATAGTAT+GGG - chr6_4:86440701-86440720 Msa1002000:CDS 35.0%
GAAAGTGATTAAGGAGAGTT+TGG - chr6_4:86440871-86440890 Msa1002000:intron 35.0%
!! ATTGACTTGAGCTTGTAGAA+GGG + chr6_4:86440961-86440980 None:intergenic 35.0%
CAAGTCAATCTTCTGTTGTT+TGG - chr6_4:86440972-86440991 Msa1002000:intron 35.0%
!!! CATGTTCACCAACTTTTTCA+AGG - chr6_4:86441017-86441036 Msa1002000:intron 35.0%
!!! TTCACCAACTTTTTCAAGGA+AGG - chr6_4:86441021-86441040 Msa1002000:intron 35.0%
! AAAGTACCAATCTTGTTGCA+AGG - chr6_4:86441047-86441066 Msa1002000:intron 35.0%
! AATCTTGTTGCAAGGTTGAT+GGG - chr6_4:86441055-86441074 Msa1002000:intron 35.0%
AGATGGAAATGTTCTTGAAG+GGG + chr6_4:86441092-86441111 None:intergenic 35.0%
CAGATGGAAATGTTCTTGAA+GGG + chr6_4:86441093-86441112 None:intergenic 35.0%
ACAGATGGAAATGTTCTTGA+AGG + chr6_4:86441094-86441113 None:intergenic 35.0%
!!! GACTGTTTTTGCATAACAGA+TGG + chr6_4:86441109-86441128 None:intergenic 35.0%
GAACTATGCTTTCTTACCTT+CGG + chr6_4:86441184-86441203 None:intergenic 35.0%
AGAAAGAGAGAAGACACTAA+GGG - chr6_4:86441219-86441238 Msa1002000:intron 35.0%
! AAAGGAACTCCTTTTGCTTT+TGG + chr6_4:86441460-86441479 None:intergenic 35.0%
! CATCATCTCTTTTCTCATGT+TGG + chr6_4:86441511-86441530 None:intergenic 35.0%
CAACATGAGAAAAGAGATGA+TGG - chr6_4:86441509-86441528 Msa1002000:intron 35.0%
!! AACAGTTGATGAAAAAGCCA+AGG - chr6_4:86441671-86441690 Msa1002000:intron 35.0%
TCTCAGAAAACCGATACAAA+AGG - chr6_4:86441710-86441729 Msa1002000:intron 35.0%
GATGAAATGCTCTTTCTAGA+TGG + chr6_4:86441849-86441868 None:intergenic 35.0%
!!! TTGTGTCTTTGGTTTTGTGA+TGG + chr6_4:86441886-86441905 None:intergenic 35.0%
CACAAAACCAAAGACACAAA+AGG - chr6_4:86441887-86441906 Msa1002000:intron 35.0%
! CTGTTAACCTTTTGTGTCTT+TGG + chr6_4:86441897-86441916 None:intergenic 35.0%
CAAGAAGAAGGAATGAGTTT+CGG - chr6_4:86442135-86442154 Msa1002000:intron 35.0%
ACCTATGCAAATAAGACTAG+AGG - chr6_4:86442240-86442259 Msa1002000:intron 35.0%
!! ACCTCTAGTCTTATTTGCAT+AGG + chr6_4:86442244-86442263 None:intergenic 35.0%
AATTGTCACTGGATACACTT+TGG - chr6_4:86442274-86442293 Msa1002000:intron 35.0%
CATCATCAACTGAAGAATTC+TGG + chr6_4:86442618-86442637 None:intergenic 35.0%
TCAATCTTTGGTAGGATCTT+AGG + chr6_4:86442877-86442896 None:intergenic 35.0%
CTACACAAGTTAGCAATAAG+GGG + chr6_4:86442993-86443012 None:intergenic 35.0%
CCTACACAAGTTAGCAATAA+GGG + chr6_4:86442994-86443013 None:intergenic 35.0%
! CCTTATTGCTAACTTGTGTA+GGG - chr6_4:86442992-86443011 Msa1002000:intron 35.0%
GAGATATGAAGTGCAACAAT+AGG - chr6_4:86443145-86443164 Msa1002000:intron 35.0%
ATAAATGGAATGTGGAACTG+TGG - chr6_4:86443171-86443190 Msa1002000:intron 35.0%
CTGATTAGACTGTTTAGATG+TGG + chr6_4:86443379-86443398 None:intergenic 35.0%
GTGAAGATGCTGATATCTAA+GGG + chr6_4:86443532-86443551 None:intergenic 35.0%
TAAGCTCACAGAGACAATAC+GGG + chr6_4:86437649-86437668 None:intergenic 40.0%
CTAAGCTCACAGAGACAATA+CGG + chr6_4:86437650-86437669 None:intergenic 40.0%
TGCATTATTTATGCAGGGGT+TGG - chr6_4:86437688-86437707 Msa1002000:three_prime_UTR 40.0%
GCATTATTTATGCAGGGGTT+GGG - chr6_4:86437689-86437708 Msa1002000:three_prime_UTR 40.0%
CATTATTTATGCAGGGGTTG+GGG - chr6_4:86437690-86437709 Msa1002000:three_prime_UTR 40.0%
ACAATTAAAGTGGGATGTCC+GGG + chr6_4:86437723-86437742 None:intergenic 40.0%
CACAATTAAAGTGGGATGTC+CGG + chr6_4:86437724-86437743 None:intergenic 40.0%
AGGGCTCACACAATTAAAGT+GGG + chr6_4:86437732-86437751 None:intergenic 40.0%
TAGGGCTCACACAATTAAAG+TGG + chr6_4:86437733-86437752 None:intergenic 40.0%
!! TTTTTGGTCTAGTAGCCTAG+TGG + chr6_4:86437757-86437776 None:intergenic 40.0%
ATTATCCCACCAAGTATGGT+TGG - chr6_4:86437987-86438006 Msa1002000:three_prime_UTR 40.0%
ACAATCCAACCATACTTGGT+GGG + chr6_4:86437995-86438014 None:intergenic 40.0%
AACAATCCAACCATACTTGG+TGG + chr6_4:86437996-86438015 None:intergenic 40.0%
GAATGGAGGAAGTAAGAGTT+AGG + chr6_4:86438132-86438151 None:intergenic 40.0%
!! CGGCTTAAAGATTAGTTTCG+TGG + chr6_4:86438689-86438708 None:intergenic 40.0%
ATCATGTGAATGAAGTTGCG+TGG - chr6_4:86439151-86439170 Msa1002000:three_prime_UTR 40.0%
GTGTCACACAAAGTGGAAAA+TGG + chr6_4:86439179-86439198 None:intergenic 40.0%
AGAAATTCAGATCCAAGTGG+GGG + chr6_4:86439489-86439508 None:intergenic 40.0%
CTTACATGATCTTGTCCTCT+TGG + chr6_4:86440178-86440197 None:intergenic 40.0%
GGATCATCACATGTCACAAA+TGG + chr6_4:86440350-86440369 None:intergenic 40.0%
GTGACATGTGATGATCCAAA+AGG - chr6_4:86440353-86440372 Msa1002000:CDS 40.0%
TGAACAACATGATTGAGTCG+TGG - chr6_4:86440576-86440595 Msa1002000:CDS 40.0%
GCAAGAAGCTTCGAATAGTA+TGG - chr6_4:86440700-86440719 Msa1002000:CDS 40.0%
TCGATTGAAGAGAAGACAAG+AGG - chr6_4:86440724-86440743 Msa1002000:CDS 40.0%
CTCTTCAAGTAGTTGTAGAG+AGG - chr6_4:86440841-86440860 Msa1002000:intron 40.0%
!! GATTGACTTGAGCTTGTAGA+AGG + chr6_4:86440962-86440981 None:intergenic 40.0%
CATCAACCTTGCAACAAGAT+TGG + chr6_4:86441056-86441075 None:intergenic 40.0%
CAATCTTGTTGCAAGGTTGA+TGG - chr6_4:86441054-86441073 Msa1002000:intron 40.0%
CTTAGTGTCTTCTCTCTTTC+TGG + chr6_4:86441220-86441239 None:intergenic 40.0%
CAGAAAGAGAGAAGACACTA+AGG - chr6_4:86441218-86441237 Msa1002000:intron 40.0%
CGAGGTTTCATGAGTACAAT+CGG + chr6_4:86441367-86441386 None:intergenic 40.0%
CGATTGTACTCATGAAACCT+CGG - chr6_4:86441365-86441384 Msa1002000:intron 40.0%
CTAAAGGAAAACTCTTCTCG+AGG + chr6_4:86441433-86441452 None:intergenic 40.0%
TTCCTTTCTCCTTCAAACCA+AGG - chr6_4:86441473-86441492 Msa1002000:intron 40.0%
! TTCCTTGGTTTGAAGGAGAA+AGG + chr6_4:86441478-86441497 None:intergenic 40.0%
TTTCTCCTTCAAACCAAGGA+AGG - chr6_4:86441477-86441496 Msa1002000:intron 40.0%
! TTGAACCTTCCTTGGTTTGA+AGG + chr6_4:86441485-86441504 None:intergenic 40.0%
CAGAAAACCGATACAAAAGG+AGG - chr6_4:86441713-86441732 Msa1002000:intron 40.0%
ACAATAGGTTTAGCTGCTTC+AGG + chr6_4:86441972-86441991 None:intergenic 40.0%
AGTAACAGAAGATCTCATCG+TGG - chr6_4:86442203-86442222 Msa1002000:intron 40.0%
GTCGATGAGCATCTCATAAA+CGG - chr6_4:86442442-86442461 Msa1002000:intron 40.0%
CCTCGCAATTATCTGCAAAA+GGG + chr6_4:86442591-86442610 None:intergenic 40.0%
TCCTCGCAATTATCTGCAAA+AGG + chr6_4:86442592-86442611 None:intergenic 40.0%
! TTTTGCAGATAATTGCGAGG+AGG - chr6_4:86442591-86442610 Msa1002000:intron 40.0%
TTTGCAGATAATTGCGAGGA+GGG - chr6_4:86442592-86442611 Msa1002000:intron 40.0%
AAATGATACCATCCTTGCTG+AGG - chr6_4:86442663-86442682 Msa1002000:intron 40.0%
GATTGAGAAACTCATCTGCA+TGG + chr6_4:86442840-86442859 None:intergenic 40.0%
CTAACTGTGATGACTCTTGA+AGG + chr6_4:86442966-86442985 None:intergenic 40.0%
! CCCTTATTGCTAACTTGTGT+AGG - chr6_4:86442991-86443010 Msa1002000:intron 40.0%
CCCTACACAAGTTAGCAATA+AGG + chr6_4:86442995-86443014 None:intergenic 40.0%
! GCAAATCTCTTTGGGAAGTT+TGG - chr6_4:86443026-86443045 Msa1002000:intron 40.0%
GGATATACAGCCCTTAGTTA+TGG - chr6_4:86443318-86443337 Msa1002000:intron 40.0%
CAACCCAGATCCATAACTAA+GGG + chr6_4:86443331-86443350 None:intergenic 40.0%
ACAACCCAGATCCATAACTA+AGG + chr6_4:86443332-86443351 None:intergenic 40.0%
! TAAGGGATTTGAAACGTGTG+CGG + chr6_4:86443515-86443534 None:intergenic 40.0%
GGTGAAGATGCTGATATCTA+AGG + chr6_4:86443533-86443552 None:intergenic 40.0%
AGGACTAAGAAATTGACCAC+AGG - chr6_4:86443567-86443586 Msa1002000:intron 40.0%
CTAAGAAATTGACCACAGGA+AGG - chr6_4:86443571-86443590 Msa1002000:intron 40.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr6_4:86437661-86437680 Msa1002000:three_prime_UTR 45.0%
GTCTAGTAGCCTAGTGGTTA+GGG + chr6_4:86437751-86437770 None:intergenic 45.0%
AGAGACAGTGTCACACAAAG+TGG + chr6_4:86439186-86439205 None:intergenic 45.0%
! ACATACAAAGAGGTGTGGTG+AGG + chr6_4:86439220-86439239 None:intergenic 45.0%
! ACAGCAAGTGATGGTGTGTT+TGG + chr6_4:86439392-86439411 None:intergenic 45.0%
! TGGGGGGTGTAGAAAAAAAG+GGG + chr6_4:86439472-86439491 None:intergenic 45.0%
! GTGGGGGGTGTAGAAAAAAA+GGG + chr6_4:86439473-86439492 None:intergenic 45.0%
! AGTGGGGGGTGTAGAAAAAA+AGG + chr6_4:86439474-86439493 None:intergenic 45.0%
!!! TTTTTTCTACACCCCCCACT+TGG - chr6_4:86439474-86439493 Msa1002000:three_prime_UTR 45.0%
GAAATTCAGATCCAAGTGGG+GGG + chr6_4:86439488-86439507 None:intergenic 45.0%
! CCACACTCAACAACTCCTTT+TGG + chr6_4:86440371-86440390 None:intergenic 45.0%
CCAAAAGGAGTTGTTGAGTG+TGG - chr6_4:86440368-86440387 Msa1002000:CDS 45.0%
TTGTTGAGTGTGGAAGTCTG+AGG - chr6_4:86440378-86440397 Msa1002000:CDS 45.0%
GTGGAAGTCTGAGGAGATAT+AGG - chr6_4:86440387-86440406 Msa1002000:CDS 45.0%
!! TAAGACAAAGTGCCGAAAGC+CGG - chr6_4:86440433-86440452 Msa1002000:CDS 45.0%
!! CTAAATTTTCGGCCGGCTTT+CGG + chr6_4:86440448-86440467 None:intergenic 45.0%
TCCATCTTCTTTGCAGCTTG+TGG - chr6_4:86440529-86440548 Msa1002000:CDS 45.0%
TCCACAAGCTGCAAAGAAGA+TGG + chr6_4:86440533-86440552 None:intergenic 45.0%
ATCTTCTTTGCAGCTTGTGG+AGG - chr6_4:86440532-86440551 Msa1002000:CDS 45.0%
ATGATTGAGTCGTGGTCTAG+AGG - chr6_4:86440584-86440603 Msa1002000:CDS 45.0%
! GTCTCTAGAGATGCTTCGTA+AGG - chr6_4:86440676-86440695 Msa1002000:CDS 45.0%
!! CTTCAGAAGTGCTTGTGCTT+TGG + chr6_4:86440913-86440932 None:intergenic 45.0%
CAAAGCACAAGCACTTCTGA+AGG - chr6_4:86440911-86440930 Msa1002000:intron 45.0%
! CACAAGCACTTCTGAAGGAT+TGG - chr6_4:86440916-86440935 Msa1002000:intron 45.0%
! GTAGTCCTATTAGAGAGCAC+AGG - chr6_4:86441281-86441300 Msa1002000:intron 45.0%
GGTTTCATGAGTACAATCGG+TGG + chr6_4:86441364-86441383 None:intergenic 45.0%
GAAAACTCTTCTCGAGGAAC+CGG + chr6_4:86441427-86441446 None:intergenic 45.0%
!! GTTGGTAGTTGAACCTTCCT+TGG + chr6_4:86441493-86441512 None:intergenic 45.0%
CAAGGCTGTTGAAAGCAAGA+AGG - chr6_4:86441614-86441633 Msa1002000:intron 45.0%
GTGGCAAAAGCTCAAGATCA+AGG - chr6_4:86441753-86441772 Msa1002000:intron 45.0%
CTCAAGATCAAGGCGAAATC+AGG - chr6_4:86441763-86441782 Msa1002000:intron 45.0%
! CCCTTTTGCAGATAATTGCG+AGG - chr6_4:86442588-86442607 Msa1002000:intron 45.0%
GAAACAAGTTTCACTGACGC+TGG + chr6_4:86442704-86442723 None:intergenic 45.0%
ATTGCTGACACCGTCTGTAT+CGG - chr6_4:86442739-86442758 Msa1002000:intron 45.0%
! ATCGGTTTCACCGATACAGA+CGG + chr6_4:86442752-86442771 None:intergenic 45.0%
! GTCTTTGTCTGGCTCGAAAT+CGG + chr6_4:86442770-86442789 None:intergenic 45.0%
!! AGCTCAGAAGTGTCTTTGTC+TGG + chr6_4:86442781-86442800 None:intergenic 45.0%
ATGGAATGTGGAACTGTGGT+TGG - chr6_4:86443175-86443194 Msa1002000:intron 45.0%
ACAGCCCTTAGTTATGGATC+TGG - chr6_4:86443324-86443343 Msa1002000:intron 45.0%
CAGCCCTTAGTTATGGATCT+GGG - chr6_4:86443325-86443344 Msa1002000:intron 45.0%
TTATGGATCTGGGTTGTGTG+CGG - chr6_4:86443335-86443354 Msa1002000:intron 45.0%
!! TTAAATTAATTAACTTAAAA+GGG + chr6_4:86439054-86439073 None:intergenic 5.0%
!! TTTAAATTAATTAACTTAAA+AGG + chr6_4:86439055-86439074 None:intergenic 5.0%
CTCTGTGAGCTTAGCTCAGT+TGG - chr6_4:86437656-86437675 Msa1002000:three_prime_UTR 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr6_4:86437660-86437679 Msa1002000:three_prime_UTR 50.0%
TTGTGTGAGCCCTAACCACT+AGG - chr6_4:86437739-86437758 Msa1002000:three_prime_UTR 50.0%
GGTCTAGTAGCCTAGTGGTT+AGG + chr6_4:86437752-86437771 None:intergenic 50.0%
AGGTGTGGTGAGGTGAATGA+AGG + chr6_4:86439210-86439229 None:intergenic 50.0%
! GGGGGGTGTAGAAAAAAAGG+GGG + chr6_4:86439471-86439490 None:intergenic 50.0%
! TCTAGAGGTGTGAGGTACGA+TGG - chr6_4:86440599-86440618 Msa1002000:CDS 50.0%
GGTGTGTCAATCTCGAACAC+AGG + chr6_4:86441163-86441182 None:intergenic 50.0%
GTTCGAGATTGACACACCGA+AGG - chr6_4:86441165-86441184 Msa1002000:intron 50.0%
CGAAGCCTGTGCTCTCTAAT+AGG + chr6_4:86441289-86441308 None:intergenic 50.0%
GTTCGTAGAAACGTACGAGC+CGG - chr6_4:86441405-86441424 Msa1002000:intron 50.0%
! GAAGCGCGTCAACGAGTTTT+TGG - chr6_4:86441572-86441591 Msa1002000:intron 50.0%
TCAATCCTCGACACACTTCG+CGG + chr6_4:86441813-86441832 None:intergenic 50.0%
GGATACACTTTGGCCCTGTT+TGG - chr6_4:86442284-86442303 Msa1002000:intron 50.0%
ACAAGTTTCACTGACGCTGG+TGG + chr6_4:86442701-86442720 None:intergenic 50.0%
GAATGTGGAACTGTGGTTGG+AGG - chr6_4:86443178-86443197 Msa1002000:intron 50.0%
TATGGATCTGGGTTGTGTGC+GGG - chr6_4:86443336-86443355 Msa1002000:intron 50.0%
CCAGTCCTTCCGATCTTGAT+CGG - chr6_4:86443455-86443474 Msa1002000:intron 50.0%
TCCTTCCGATCTTGATCGGA+CGG - chr6_4:86443459-86443478 Msa1002000:intron 50.0%
CAGCTTGTGGAGGTCTCTAG+AGG - chr6_4:86440542-86440561 Msa1002000:CDS 55.0%
! AGTCGTGGTCTAGAGGTGTG+AGG - chr6_4:86440591-86440610 Msa1002000:CDS 55.0%
ACGAGCTTCCTCAGCAAGGA+TGG + chr6_4:86442674-86442693 None:intergenic 55.0%
TGTCACGAGCTTCCTCAGCA+AGG + chr6_4:86442678-86442697 None:intergenic 55.0%
TGGAACTGTGGTTGGAGGCA+TGG - chr6_4:86443183-86443202 Msa1002000:intron 55.0%
CCGATCAAGATCGGAAGGAC+TGG + chr6_4:86443458-86443477 None:intergenic 55.0%
ACCGTCCGATCAAGATCGGA+AGG + chr6_4:86443463-86443482 None:intergenic 55.0%
CAGGACCGTCCGATCAAGAT+CGG + chr6_4:86443467-86443486 None:intergenic 55.0%
TTGATCGGACGGTCCTGATG+TGG - chr6_4:86443470-86443489 Msa1002000:intron 55.0%
TGCACGTAGTCAGCCACATC+AGG + chr6_4:86443486-86443505 None:intergenic 55.0%
AGGGGTTGGGGTTCGAATCC+CGG - chr6_4:86437702-86437721 Msa1002000:three_prime_UTR 60.0%
GAAAGCCGCGAAGTGTGTCG+AGG - chr6_4:86441805-86441824 Msa1002000:intron 60.0%
ACCTCGGCGCGCTTCGTATC+AGG - chr6_4:86441381-86441400 Msa1002000:intron 65.0%
TCCTGATACGAAGCGCGCCG+AGG + chr6_4:86441385-86441404 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 86437520 86443600 86437520 ID=Msa1002000;Name=Msa1002000
chr6_4 mRNA 86437520 86443600 86437520 ID=Msa1002000-mRNA-1;Parent=Msa1002000;Name=Msa1002000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.6|0.8|1|0.8|5|1617|403
chr6_4 exon 86437520 86438521 86437520 ID=Msa1002000-mRNA-1:exon:16995;Parent=Msa1002000-mRNA-1
chr6_4 exon 86438859 86439000 86438859 ID=Msa1002000-mRNA-1:exon:16994;Parent=Msa1002000-mRNA-1
chr6_4 exon 86439131 86440803 86439131 ID=Msa1002000-mRNA-1:exon:16993;Parent=Msa1002000-mRNA-1
chr6_4 exon 86440953 86440959 86440953 ID=Msa1002000-mRNA-1:exon:16992;Parent=Msa1002000-mRNA-1
chr6_4 exon 86443596 86443600 86443596 ID=Msa1002000-mRNA-1:exon:16991;Parent=Msa1002000-mRNA-1
chr6_4 CDS 86443596 86443600 86443596 ID=Msa1002000-mRNA-1:cds;Parent=Msa1002000-mRNA-1
chr6_4 CDS 86440953 86440959 86440953 ID=Msa1002000-mRNA-1:cds;Parent=Msa1002000-mRNA-1
chr6_4 CDS 86439604 86440803 86439604 ID=Msa1002000-mRNA-1:cds;Parent=Msa1002000-mRNA-1
chr6_4 three_prime_UTR 86439131 86439603 86439131 ID=Msa1002000-mRNA-1:three_prime_utr;Parent=Msa1002000-mRNA-1
chr6_4 three_prime_UTR 86438859 86439000 86438859 ID=Msa1002000-mRNA-1:three_prime_utr;Parent=Msa1002000-mRNA-1
chr6_4 three_prime_UTR 86437520 86438521 86437520 ID=Msa1002000-mRNA-1:three_prime_utr;Parent=Msa1002000-mRNA-1
Gene Sequence

>Msa1002000

ATGAGACAAATTAATATTTCTAAGGACTTAGTCATGTATAAACCATTTGTGACATGTGATGATCCAAAAGGAGTTGTTGAGTGTGGAAGTCTGAGGAGATATAGGTCAAATTCTCACAAAATGAAGGATAAGACAAAGTGCCGAAAGCCGGCCGAAAATTTAGAGACAAATAAACAAGACAAAGAAGAGAAGGTATCAAAAGGTTCAACAGAAAGAGATTTTGATCCATCTTCTTTGCAGCTTGTGGAGGTCTCTAGAGGTGCTGCAAAGTTGAACAACATGATTGAGTCGTGGTCTAGAGGTGTGAGGTACGATGGAAAATCCGATGATATTGCAAAGGATTTGTTAAAAGGCGCTCTTGATTTGCAAGAGTCTCTAGAGATGCTTCGTAAGGTGCAAGAAGCTTCGAATAGTATGGGTCGATTGAAGAGAAGACAAGAGGAGAAACATGAAAGAAGTAAAATTGATGCAAATGTGAATGATGGAAATAGATCAACACATTCTAATCAATTTTTTGAACACAATTCAGCTTATGGCTCTTCAAGTAGTTGTAGAGAGGAACTTAAGAAAGTGATTAAGGAGAGTTTGGTTCGACAAAATCTATTCCAAAGCACAAGCACTTCTGAAGGATTGGATTCAGCTTCAGCAGCATTCCCTTCTACAAGCTCAAGTCAATCTTCTGTTGTTTGGTATGACAAACTTTCGGATTCTTCATGTTCACCAACTTTTTCAAGGAAGGAAAAAAGTACCAATCTTGTTGCAAGGTTGATGGGATTAGAACAATCCCCTTCAAGAACATTTCCATCTGTTATGCAAAAACAGTCGGAGAATCAAAAGATTGTGAATCAGAAGAGACCTGTGTTCGAGATTGACACACCGAAGGTAAGAAAGCATAGTTCAATATTTGAGAATCCAGAAAGAGAGAAGACACTAAGGGAAATTCTTGAAACTACTCATTTCAATGGATTGTTAAAGAGTAGTCCTATTAGAGAGCACAGGCTTCGTAATCATGTCAATCATTCAAATGATCTTCATTATGAACAGTTTGATGATTTACCACCGATTGTACTCATGAAACCTCGGCGCGCTTCGTATCAGGAGTTCGTAGAAACGTACGAGCCGGTTCCTCGAGAAGAGTTTTCCTTTAGAAATCCAAAAGCAAAAGGAGTTCCTTTCTCCTTCAAACCAAGGAAGGTTCAACTACCAACATGA

Protein sequence

>Msa1002000

MRQINISKDLVMYKPFVTCDDPKGVVECGSLRRYRSNSHKMKDKTKCRKPAENLETNKQDKEEKVSKGSTERDFDPSSLQLVEVSRGAAKLNNMIESWSRGVRYDGKSDDIAKDLLKGALDLQESLEMLRKVQEASNSMGRLKRRQEEKHERSKIDANVNDGNRSTHSNQFFEHNSAYGSSSSCREELKKVIKESLVRQNLFQSTSTSEGLDSASAAFPSTSSSQSSVVWYDKLSDSSCSPTFSRKEKSTNLVARLMGLEQSPSRTFPSVMQKQSENQKIVNQKRPVFEIDTPKVRKHSSIFENPEREKTLREILETTHFNGLLKSSPIREHRLRNHVNHSNDLHYEQFDDLPPIVLMKPRRASYQEFVETYEPVPREEFSFRNPKAKGVPFSFKPRKVQLPT*