Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250750 | XP_039684623.1 | 82.469 | 405 | 48 | 5 | 5 | 401 | 69 | 458 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250750 | A0A396GJZ6 | 82.469 | 405 | 48 | 5 | 5 | 401 | 69 | 458 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031180 | Msa1250750 | 0.804670 | 1.932172e-49 | -8.615850e-47 |
| Msa0036140 | Msa1250750 | 0.813319 | 2.718534e-51 | -8.615850e-47 |
| Msa0610670 | Msa1250750 | 0.824025 | 1.009132e-53 | -8.615850e-47 |
| Msa0637900 | Msa1250750 | 0.810752 | 9.857256e-51 | -8.615850e-47 |
| Msa0648880 | Msa1250750 | 0.814710 | 1.341516e-51 | -8.615850e-47 |
| Msa0672690 | Msa1250750 | 0.808420 | 3.125268e-50 | -8.615850e-47 |
| Msa0688070 | Msa1250750 | 0.810613 | 1.056786e-50 | -8.615850e-47 |
| Msa0691380 | Msa1250750 | 0.801117 | 1.047248e-48 | -8.615850e-47 |
| Msa0724210 | Msa1250750 | 0.811760 | 5.959413e-51 | -8.615850e-47 |
| Msa0123300 | Msa1250750 | 0.800229 | 1.589739e-48 | -8.615850e-47 |
| Msa0212990 | Msa1250750 | 0.819168 | 1.338084e-52 | -8.615850e-47 |
| Msa0213520 | Msa1250750 | 0.817526 | 3.150599e-52 | -8.615850e-47 |
| Msa1250750 | Msa1267610 | 0.808198 | 3.484599e-50 | -8.615850e-47 |
| Msa1250750 | Msa1297290 | 0.805168 | 1.520709e-49 | -8.615850e-47 |
| Msa1250750 | Msa1385000 | 0.803784 | 2.954818e-49 | -8.615850e-47 |
| Msa1250750 | Msa1403480 | 0.825300 | 5.053715e-54 | -8.615850e-47 |
| Msa1250750 | Msa1411020 | 0.807566 | 4.749294e-50 | -8.615850e-47 |
| Msa1250750 | Msa1424290 | 0.809393 | 1.935073e-50 | -8.615850e-47 |
| Msa1250750 | Msa1434350 | 0.805020 | 1.633105e-49 | -8.615850e-47 |
| Msa1250750 | Msa1439320 | 0.808768 | 2.632526e-50 | -8.615850e-47 |
| Msa1250750 | Msa1440740 | 0.815436 | 9.252313e-52 | -8.615850e-47 |
| Msa1250750 | Msa1443060 | 0.826008 | 3.433738e-54 | -8.615850e-47 |
| Msa1250750 | Msa1460050 | 0.804501 | 2.095361e-49 | -8.615850e-47 |
| Msa0373450 | Msa1250750 | 0.802518 | 5.400713e-49 | -8.615850e-47 |
| Msa0422280 | Msa1250750 | 0.803737 | 3.021395e-49 | -8.615850e-47 |
| Msa1036610 | Msa1250750 | 0.805452 | 1.325950e-49 | -8.615850e-47 |
| Msa0255550 | Msa1250750 | 0.807790 | 4.254705e-50 | -8.615850e-47 |
| Msa0272730 | Msa1250750 | 0.806694 | 7.261971e-50 | -8.615850e-47 |
| Msa0294590 | Msa1250750 | 0.820959 | 5.205717e-53 | -8.615850e-47 |
| Msa0326520 | Msa1250750 | 0.801494 | 8.767850e-49 | -8.615850e-47 |
| Msa0330340 | Msa1250750 | 0.817664 | 2.932616e-52 | -8.615850e-47 |
| Msa1224480 | Msa1250750 | 0.808307 | 3.302146e-50 | -8.615850e-47 |
| Msa0512870 | Msa1250750 | 0.830612 | 2.662826e-55 | -8.615850e-47 |
| Msa0579200 | Msa1250750 | 0.803015 | 4.264469e-49 | -8.615850e-47 |
| Msa0585230 | Msa1250750 | 0.805232 | 1.474336e-49 | -8.615850e-47 |
| Msa0598160 | Msa1250750 | 0.800595 | 1.339041e-48 | -8.615850e-47 |
| Msa0900620 | Msa1250750 | 0.832587 | 8.682405e-56 | -8.615850e-47 |
| Msa0907950 | Msa1250750 | 0.801855 | 7.394486e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250750 | MtrunA17_Chr8g0366011 | 82.469 | 405 | 48 | 5 | 5 | 401 | 69 | 458 | 0.0 | 648 |
| Msa1250750 | MtrunA17_Chr8g0365981 | 81.975 | 405 | 50 | 5 | 5 | 401 | 6 | 395 | 0.0 | 644 |
| Msa1250750 | MtrunA17_Chr6g0448941 | 68.056 | 288 | 84 | 3 | 121 | 401 | 1 | 287 | 3.95e-132 | 380 |
| Msa1250750 | MtrunA17_Chr8g0346811 | 50.000 | 362 | 158 | 9 | 56 | 401 | 48 | 402 | 6.66e-107 | 320 |
| Msa1250750 | MtrunA17_Chr5g0396841 | 46.649 | 373 | 169 | 12 | 48 | 401 | 7 | 368 | 9.31e-92 | 281 |
| Msa1250750 | MtrunA17_Chr8g0346881 | 41.404 | 413 | 191 | 14 | 18 | 400 | 2 | 393 | 2.07e-86 | 268 |
| Msa1250750 | MtrunA17_Chr5g0442711 | 38.352 | 352 | 152 | 12 | 15 | 341 | 33 | 344 | 3.71e-58 | 193 |
| Msa1250750 | MtrunA17_Chr5g0398931 | 45.503 | 189 | 97 | 4 | 170 | 355 | 5 | 190 | 3.92e-47 | 160 |
| Msa1250750 | MtrunA17_Chr8g0346821 | 43.062 | 209 | 89 | 5 | 197 | 401 | 11 | 193 | 1.82e-41 | 145 |
| Msa1250750 | MtrunA17_Chr8g0357031 | 45.238 | 210 | 95 | 7 | 48 | 241 | 19 | 224 | 2.83e-40 | 143 |
| Msa1250750 | MtrunA17_Chr1g0152331 | 44.149 | 188 | 90 | 5 | 46 | 219 | 18 | 204 | 2.80e-38 | 137 |
| Msa1250750 | MtrunA17_Chr1g0152321 | 51.538 | 130 | 48 | 3 | 275 | 401 | 24 | 141 | 4.30e-37 | 131 |
| Msa1250750 | MtrunA17_Chr5g0399631 | 48.837 | 129 | 54 | 4 | 277 | 400 | 1 | 122 | 2.06e-33 | 121 |
| Msa1250750 | MtrunA17_Chr3g0086361 | 48.276 | 145 | 65 | 7 | 101 | 238 | 5 | 146 | 2.92e-29 | 111 |
| Msa1250750 | MtrunA17_Chr1g0204991 | 43.448 | 145 | 73 | 6 | 101 | 238 | 54 | 196 | 2.88e-25 | 102 |
| Msa1250750 | MtrunA17_Chr8g0346851 | 45.745 | 94 | 46 | 1 | 308 | 401 | 1 | 89 | 1.99e-20 | 85.1 |
| Msa1250750 | MtrunA17_Chr5g0399621 | 40.397 | 151 | 67 | 6 | 4 | 137 | 6 | 150 | 8.49e-20 | 85.5 |
| Msa1250750 | MtrunA17_Chr5g0398941 | 44.444 | 99 | 40 | 5 | 48 | 134 | 19 | 114 | 1.06e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGGAGTGGGATAAAT+TGG | 0.212367 | 8_2:+46482999 | None:intergenic |
| CTGTTACGAACAACTTGAAT+TGG | 0.248945 | 8_2:+46482928 | None:intergenic |
| TTATGGAAACCTGTTTATAA+TGG | 0.296486 | 8_2:-46482786 | Msa1250750:CDS |
| GTTGACAGGGAAATTCTTAT+AGG | 0.327370 | 8_2:-46482714 | Msa1250750:CDS |
| GGATGGGAGATCGTCTTTCT+TGG | 0.337678 | 8_2:-46482635 | Msa1250750:CDS |
| TAATGGGTGGTGGAGTTAAA+AGG | 0.341615 | 8_2:-46483463 | Msa1250750:CDS |
| ATGGAGAAAATCATATCTAT+TGG | 0.349579 | 8_2:-46482767 | Msa1250750:CDS |
| GATCAACTCCTCCAATTCTT+AGG | 0.366760 | 8_2:+46482862 | None:intergenic |
| TAGCTATCAAATCTATACTT+TGG | 0.368755 | 8_2:-46482598 | Msa1250750:CDS |
| AGCTACTTGCGGCCACAAAC+TGG | 0.380713 | 8_2:-46482520 | Msa1250750:CDS |
| CAAGTAATCGTAATCGTAAT+CGG | 0.381178 | 8_2:-46483352 | Msa1250750:CDS |
| GCATATTACTGCTTTGTAAA+GGG | 0.382733 | 8_2:-46483073 | Msa1250750:CDS |
| TCAAGCCTGAAAATCCATTT+CGG | 0.391889 | 8_2:+46482406 | None:intergenic |
| AATGGACACAAGATTCATTT+CGG | 0.404185 | 8_2:-46483137 | Msa1250750:CDS |
| CAACTTGAATTGGGCAGTGT+TGG | 0.407510 | 8_2:+46482938 | None:intergenic |
| AATAGCAGTAAACCAATGTT+TGG | 0.409082 | 8_2:+46483244 | None:intergenic |
| GATCGTCTTTCTTGGATTCA+AGG | 0.425488 | 8_2:-46482627 | Msa1250750:CDS |
| GGCATATTACTGCTTTGTAA+AGG | 0.427079 | 8_2:-46483074 | Msa1250750:CDS |
| AACTTGAATTGGGCAGTGTT+GGG | 0.432328 | 8_2:+46482939 | None:intergenic |
| TATTGTCAAAATCCAGTTTG+TGG | 0.438830 | 8_2:+46482508 | None:intergenic |
| ACCAGTAAATTCTCCTCTGT+GGG | 0.441044 | 8_2:-46482670 | Msa1250750:CDS |
| GCTTTATTGGATTCATGTCA+TGG | 0.449006 | 8_2:-46483095 | Msa1250750:CDS |
| TCTAGCTATGTTGGAGCACT+TGG | 0.452526 | 8_2:+46482273 | None:intergenic |
| TATTTCCTAGATCATGTCAA+TGG | 0.452559 | 8_2:-46483155 | Msa1250750:CDS |
| CCCCACAGAGGAGAATTTAC+TGG | 0.453788 | 8_2:+46482669 | None:intergenic |
| ATTTATCCCACTCCTTCAAA+AGG | 0.457276 | 8_2:-46482996 | Msa1250750:CDS |
| CATTGCAGTGGGCAATTATG+AGG | 0.466877 | 8_2:-46482328 | Msa1250750:CDS |
| GATATTTACAACGTAGAGAC+CGG | 0.471398 | 8_2:+46483196 | None:intergenic |
| ACCAGGAAATCTAGCTATGT+TGG | 0.477116 | 8_2:+46482264 | None:intergenic |
| ATGGAATCTTTATCATGAGA+TGG | 0.481645 | 8_2:-46482559 | Msa1250750:CDS |
| TTAAAGCAGGACTTAAGGAT+AGG | 0.486633 | 8_2:+46483026 | None:intergenic |
| TGTTACGAACAACTTGAATT+GGG | 0.498389 | 8_2:+46482929 | None:intergenic |
| CAAGTAGCTTCGTAATCAAA+AGG | 0.504664 | 8_2:+46482534 | None:intergenic |
| GGAGAATTTACTGGTGGAGG+GGG | 0.508943 | 8_2:+46482678 | None:intergenic |
| TGTGTCCATTGACATGATCT+AGG | 0.509897 | 8_2:+46483150 | None:intergenic |
| TACGTTGTAAATATCAAGTC+GGG | 0.511317 | 8_2:-46483188 | Msa1250750:CDS |
| TAAAGCAGGACTTAAGGATA+GGG | 0.512246 | 8_2:+46483027 | None:intergenic |
| ACAGATGTTCTAAATGTTGA+GGG | 0.517825 | 8_2:-46482909 | Msa1250750:CDS |
| GAGTTGAGTAAACAGTTAAG+AGG | 0.522175 | 8_2:+46483281 | None:intergenic |
| CACCAGTAAATTCTCCTCTG+TGG | 0.522553 | 8_2:-46482671 | Msa1250750:CDS |
| TTATTGTGATGGATGTTGAC+AGG | 0.526666 | 8_2:-46482728 | Msa1250750:CDS |
| AACAGATGTTCTAAATGTTG+AGG | 0.528904 | 8_2:-46482910 | Msa1250750:CDS |
| GATATAATTATAATGGGTGG+TGG | 0.531666 | 8_2:-46483473 | None:intergenic |
| AGAGGAGAATTTACTGGTGG+AGG | 0.532452 | 8_2:+46482675 | None:intergenic |
| TGGAATCTTTATCATGAGAT+GGG | 0.538686 | 8_2:-46482558 | Msa1250750:CDS |
| CAGTAAATTCTCCTCTGTGG+GGG | 0.544105 | 8_2:-46482668 | Msa1250750:CDS |
| GAGAATTTACTGGTGGAGGG+GGG | 0.544529 | 8_2:+46482679 | None:intergenic |
| CAGTGGGCAATTATGAGGCA+TGG | 0.547228 | 8_2:-46482323 | Msa1250750:CDS |
| GACCGGGTGGTTTAAGACGC+AGG | 0.548258 | 8_2:+46483213 | None:intergenic |
| ATAGCAAGCATCACGTCTTG+AGG | 0.548834 | 8_2:+46483317 | None:intergenic |
| ATCTATTGGATAACAAGTGA+TGG | 0.552981 | 8_2:-46482753 | Msa1250750:CDS |
| GGGTGGTTTAAGACGCAGGC+AGG | 0.560455 | 8_2:+46483217 | None:intergenic |
| AAAATTGATGGCATTGCAGT+GGG | 0.561648 | 8_2:-46482339 | Msa1250750:CDS |
| AGTAAATTCTCCTCTGTGGG+GGG | 0.562843 | 8_2:-46482667 | Msa1250750:CDS |
| CAAGGTATGTCTCCAAACAT+TGG | 0.566955 | 8_2:-46483256 | Msa1250750:CDS |
| GAGGAGAATTTACTGGTGGA+GGG | 0.567789 | 8_2:+46482676 | None:intergenic |
| GGTTTAAGACGCAGGCAGGA+TGG | 0.573461 | 8_2:+46483221 | None:intergenic |
| TAGCAAGCATCACGTCTTGA+GGG | 0.578183 | 8_2:+46483318 | None:intergenic |
| ACTGTTTACTCAACTCTGCA+AGG | 0.590768 | 8_2:-46483274 | Msa1250750:CDS |
| TTGGAGGAGTTGATCACACA+TGG | 0.599797 | 8_2:-46482854 | Msa1250750:CDS |
| CTACGTTGTAAATATCAAGT+CGG | 0.601531 | 8_2:-46483189 | Msa1250750:CDS |
| TTTGATTACGAAGCTACTTG+CGG | 0.612000 | 8_2:-46482531 | Msa1250750:CDS |
| TGGCAACGAAACTAGAGTGT+TGG | 0.614331 | 8_2:+46482293 | None:intergenic |
| GTAGATATAATTATAATGGG+TGG | 0.619114 | 8_2:-46483476 | None:intergenic |
| CCAGTAAATTCTCCTCTGTG+GGG | 0.619819 | 8_2:-46482669 | Msa1250750:CDS |
| TGCCTGCGTCTTAAACCACC+CGG | 0.633965 | 8_2:-46483215 | Msa1250750:CDS |
| AAGTGATGGAGTTATTGTGA+TGG | 0.649160 | 8_2:-46482739 | Msa1250750:CDS |
| AGATGTTCTAAATGTTGAGG+GGG | 0.649992 | 8_2:-46482907 | Msa1250750:CDS |
| AGGAGAATTTACTGGTGGAG+GGG | 0.653508 | 8_2:+46482677 | None:intergenic |
| ATATTTACAACGTAGAGACC+GGG | 0.660650 | 8_2:+46483197 | None:intergenic |
| TATTGTGATGGATGTTGACA+GGG | 0.664460 | 8_2:-46482727 | Msa1250750:CDS |
| CAGATGTTCTAAATGTTGAG+GGG | 0.666587 | 8_2:-46482908 | Msa1250750:CDS |
| CACAGAGGAGAATTTACTGG+TGG | 0.672368 | 8_2:+46482672 | None:intergenic |
| AGTTAAGAGGAACTAAACAA+AGG | 0.686699 | 8_2:+46483294 | None:intergenic |
| TGGAGGAGTTGATCACACAT+GGG | 0.717333 | 8_2:-46482853 | Msa1250750:CDS |
| TTTACAACGTAGAGACCGGG+TGG | 0.744777 | 8_2:+46483200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTGTTGTAAAAAAAATT+TGG | + | chr8_2:46483297-46483316 | None:intergenic | 15.0% |
| !!! | TAAGTGTTGTAAAAAAAATT+TGG | + | chr8_2:46483297-46483316 | None:intergenic | 15.0% |
| !!! | ATAAATTGGAATTTTAAAGC+AGG | + | chr8_2:46482729-46482748 | None:intergenic | 20.0% |
| !!! | TCCTTGACTTTAAATTTTTA+TGG | - | chr8_2:46482936-46482955 | Msa1250750:CDS | 20.0% |
| !!! | TCCATAAAAATTTAAAGTCA+AGG | + | chr8_2:46482940-46482959 | None:intergenic | 20.0% |
| !!! | TATACTTTGGATTTTGATTT+AGG | - | chr8_2:46483154-46483173 | Msa1250750:CDS | 20.0% |
| !!! | ATAAATTGGAATTTTAAAGC+AGG | + | chr8_2:46482729-46482748 | None:intergenic | 20.0% |
| !!! | TCCTTGACTTTAAATTTTTA+TGG | - | chr8_2:46482936-46482955 | Msa1250750:CDS | 20.0% |
| !!! | TCCATAAAAATTTAAAGTCA+AGG | + | chr8_2:46482940-46482959 | None:intergenic | 20.0% |
| !!! | TATACTTTGGATTTTGATTT+AGG | - | chr8_2:46483154-46483173 | Msa1250750:CDS | 20.0% |
| ! | TTATGGAAACCTGTTTATAA+TGG | - | chr8_2:46482953-46482972 | Msa1250750:CDS | 25.0% |
| !! | TGATTTTCTCCATTATAAAC+AGG | + | chr8_2:46482965-46482984 | None:intergenic | 25.0% |
| ! | ATGGAGAAAATCATATCTAT+TGG | - | chr8_2:46482972-46482991 | Msa1250750:CDS | 25.0% |
| ! | TAGCTATCAAATCTATACTT+TGG | - | chr8_2:46483141-46483160 | Msa1250750:CDS | 25.0% |
| !!! | TGGATTTTGATTTAGGAAAA+TGG | - | chr8_2:46483161-46483180 | Msa1250750:CDS | 25.0% |
| !!! | GGATTTTGACAATATTACAA+CGG | - | chr8_2:46483240-46483259 | Msa1250750:CDS | 25.0% |
| ! | TTATGGAAACCTGTTTATAA+TGG | - | chr8_2:46482953-46482972 | Msa1250750:CDS | 25.0% |
| !! | TGATTTTCTCCATTATAAAC+AGG | + | chr8_2:46482965-46482984 | None:intergenic | 25.0% |
| ! | ATGGAGAAAATCATATCTAT+TGG | - | chr8_2:46482972-46482991 | Msa1250750:CDS | 25.0% |
| ! | TAGCTATCAAATCTATACTT+TGG | - | chr8_2:46483141-46483160 | Msa1250750:CDS | 25.0% |
| !!! | TGGATTTTGATTTAGGAAAA+TGG | - | chr8_2:46483161-46483180 | Msa1250750:CDS | 25.0% |
| !!! | GGATTTTGACAATATTACAA+CGG | - | chr8_2:46483240-46483259 | Msa1250750:CDS | 25.0% |
| CAAGTAATCGTAATCGTAAT+CGG | - | chr8_2:46482387-46482406 | Msa1250750:CDS | 30.0% | |
| AGTTAAGAGGAACTAAACAA+AGG | + | chr8_2:46482448-46482467 | None:intergenic | 30.0% | |
| AATAGCAGTAAACCAATGTT+TGG | + | chr8_2:46482498-46482517 | None:intergenic | 30.0% | |
| CTACGTTGTAAATATCAAGT+CGG | - | chr8_2:46482550-46482569 | Msa1250750:CDS | 30.0% | |
| TACGTTGTAAATATCAAGTC+GGG | - | chr8_2:46482551-46482570 | Msa1250750:CDS | 30.0% | |
| TATTTCCTAGATCATGTCAA+TGG | - | chr8_2:46482584-46482603 | Msa1250750:CDS | 30.0% | |
| AATGGACACAAGATTCATTT+CGG | - | chr8_2:46482602-46482621 | Msa1250750:CDS | 30.0% | |
| !! | AATAAAGCACCCATTTTTGA+AGG | + | chr8_2:46482632-46482651 | None:intergenic | 30.0% |
| TTCAAAAATGGGTGCTTTAT+TGG | - | chr8_2:46482631-46482650 | Msa1250750:CDS | 30.0% | |
| GCATATTACTGCTTTGTAAA+GGG | - | chr8_2:46482666-46482685 | Msa1250750:CDS | 30.0% | |
| !!! | GAATTTTAAAGCAGGACTTA+AGG | + | chr8_2:46482721-46482740 | None:intergenic | 30.0% |
| ! | AAACGAATTGATCCTTTTGA+AGG | + | chr8_2:46482758-46482777 | None:intergenic | 30.0% |
| TGTTACGAACAACTTGAATT+GGG | + | chr8_2:46482813-46482832 | None:intergenic | 30.0% | |
| ! | AACAGATGTTCTAAATGTTG+AGG | - | chr8_2:46482829-46482848 | Msa1250750:CDS | 30.0% |
| ! | ACAGATGTTCTAAATGTTGA+GGG | - | chr8_2:46482830-46482849 | Msa1250750:CDS | 30.0% |
| !!! | GTTTTTTACGTCCTAAGAAT+TGG | - | chr8_2:46482866-46482885 | Msa1250750:CDS | 30.0% |
| ATCTATTGGATAACAAGTGA+TGG | - | chr8_2:46482986-46483005 | Msa1250750:CDS | 30.0% | |
| ATGGAATCTTTATCATGAGA+TGG | - | chr8_2:46483180-46483199 | Msa1250750:CDS | 30.0% | |
| TGGAATCTTTATCATGAGAT+GGG | - | chr8_2:46483181-46483200 | Msa1250750:CDS | 30.0% | |
| TATTGTCAAAATCCAGTTTG+TGG | + | chr8_2:46483234-46483253 | None:intergenic | 30.0% | |
| !!! | GAAAATCCATTTCGGTTTTT+TGG | + | chr8_2:46483328-46483347 | None:intergenic | 30.0% |
| !! | AAAAACCGAAATGGATTTTC+AGG | - | chr8_2:46483328-46483347 | Msa1250750:CDS | 30.0% |
| AGACAACTGACAAAAATTGA+TGG | - | chr8_2:46483388-46483407 | Msa1250750:CDS | 30.0% | |
| CAAGTAATCGTAATCGTAAT+CGG | - | chr8_2:46482387-46482406 | Msa1250750:CDS | 30.0% | |
| AGTTAAGAGGAACTAAACAA+AGG | + | chr8_2:46482448-46482467 | None:intergenic | 30.0% | |
| AATAGCAGTAAACCAATGTT+TGG | + | chr8_2:46482498-46482517 | None:intergenic | 30.0% | |
| CTACGTTGTAAATATCAAGT+CGG | - | chr8_2:46482550-46482569 | Msa1250750:CDS | 30.0% | |
| TACGTTGTAAATATCAAGTC+GGG | - | chr8_2:46482551-46482570 | Msa1250750:CDS | 30.0% | |
| TATTTCCTAGATCATGTCAA+TGG | - | chr8_2:46482584-46482603 | Msa1250750:CDS | 30.0% | |
| AATGGACACAAGATTCATTT+CGG | - | chr8_2:46482602-46482621 | Msa1250750:CDS | 30.0% | |
| !! | AATAAAGCACCCATTTTTGA+AGG | + | chr8_2:46482632-46482651 | None:intergenic | 30.0% |
| TTCAAAAATGGGTGCTTTAT+TGG | - | chr8_2:46482631-46482650 | Msa1250750:CDS | 30.0% | |
| GCATATTACTGCTTTGTAAA+GGG | - | chr8_2:46482666-46482685 | Msa1250750:CDS | 30.0% | |
| !!! | GAATTTTAAAGCAGGACTTA+AGG | + | chr8_2:46482721-46482740 | None:intergenic | 30.0% |
| ! | AAACGAATTGATCCTTTTGA+AGG | + | chr8_2:46482758-46482777 | None:intergenic | 30.0% |
| TGTTACGAACAACTTGAATT+GGG | + | chr8_2:46482813-46482832 | None:intergenic | 30.0% | |
| ! | AACAGATGTTCTAAATGTTG+AGG | - | chr8_2:46482829-46482848 | Msa1250750:CDS | 30.0% |
| ! | ACAGATGTTCTAAATGTTGA+GGG | - | chr8_2:46482830-46482849 | Msa1250750:CDS | 30.0% |
| !!! | GTTTTTTACGTCCTAAGAAT+TGG | - | chr8_2:46482866-46482885 | Msa1250750:CDS | 30.0% |
| ATCTATTGGATAACAAGTGA+TGG | - | chr8_2:46482986-46483005 | Msa1250750:CDS | 30.0% | |
| ATGGAATCTTTATCATGAGA+TGG | - | chr8_2:46483180-46483199 | Msa1250750:CDS | 30.0% | |
| TGGAATCTTTATCATGAGAT+GGG | - | chr8_2:46483181-46483200 | Msa1250750:CDS | 30.0% | |
| TATTGTCAAAATCCAGTTTG+TGG | + | chr8_2:46483234-46483253 | None:intergenic | 30.0% | |
| !!! | GAAAATCCATTTCGGTTTTT+TGG | + | chr8_2:46483328-46483347 | None:intergenic | 30.0% |
| !! | AAAAACCGAAATGGATTTTC+AGG | - | chr8_2:46483328-46483347 | Msa1250750:CDS | 30.0% |
| AGACAACTGACAAAAATTGA+TGG | - | chr8_2:46483388-46483407 | Msa1250750:CDS | 30.0% | |
| GAGTTGAGTAAACAGTTAAG+AGG | + | chr8_2:46482461-46482480 | None:intergenic | 35.0% | |
| ATATTTACAACGTAGAGACC+GGG | + | chr8_2:46482545-46482564 | None:intergenic | 35.0% | |
| GATATTTACAACGTAGAGAC+CGG | + | chr8_2:46482546-46482565 | None:intergenic | 35.0% | |
| ! | GCTTTATTGGATTCATGTCA+TGG | - | chr8_2:46482644-46482663 | Msa1250750:CDS | 35.0% |
| GGCATATTACTGCTTTGTAA+AGG | - | chr8_2:46482665-46482684 | Msa1250750:CDS | 35.0% | |
| TAAAGCAGGACTTAAGGATA+GGG | + | chr8_2:46482715-46482734 | None:intergenic | 35.0% | |
| TTAAAGCAGGACTTAAGGAT+AGG | + | chr8_2:46482716-46482735 | None:intergenic | 35.0% | |
| TTTGAAGGAGTGGGATAAAT+TGG | + | chr8_2:46482743-46482762 | None:intergenic | 35.0% | |
| ATTTATCCCACTCCTTCAAA+AGG | - | chr8_2:46482743-46482762 | Msa1250750:CDS | 35.0% | |
| !! | ATTGATCCTTTTGAAGGAGT+GGG | + | chr8_2:46482752-46482771 | None:intergenic | 35.0% |
| !! | AATTGATCCTTTTGAAGGAG+TGG | + | chr8_2:46482753-46482772 | None:intergenic | 35.0% |
| CTGTTACGAACAACTTGAAT+TGG | + | chr8_2:46482814-46482833 | None:intergenic | 35.0% | |
| ! | CAGATGTTCTAAATGTTGAG+GGG | - | chr8_2:46482831-46482850 | Msa1250750:CDS | 35.0% |
| ! | AGATGTTCTAAATGTTGAGG+GGG | - | chr8_2:46482832-46482851 | Msa1250750:CDS | 35.0% |
| ! | TTTTACGTCCTAAGAATTGG+AGG | - | chr8_2:46482869-46482888 | Msa1250750:CDS | 35.0% |
| ! | AAGTGATGGAGTTATTGTGA+TGG | - | chr8_2:46483000-46483019 | Msa1250750:CDS | 35.0% |
| !! | TTATTGTGATGGATGTTGAC+AGG | - | chr8_2:46483011-46483030 | Msa1250750:CDS | 35.0% |
| !! | TATTGTGATGGATGTTGACA+GGG | - | chr8_2:46483012-46483031 | Msa1250750:CDS | 35.0% |
| GTTGACAGGGAAATTCTTAT+AGG | - | chr8_2:46483025-46483044 | Msa1250750:CDS | 35.0% | |
| CAAGTAGCTTCGTAATCAAA+AGG | + | chr8_2:46483208-46483227 | None:intergenic | 35.0% | |
| TTTGATTACGAAGCTACTTG+CGG | - | chr8_2:46483208-46483227 | Msa1250750:CDS | 35.0% | |
| AATCCACCAAAAAACCGAAA+TGG | - | chr8_2:46483319-46483338 | Msa1250750:CDS | 35.0% | |
| !!! | AATCCATTTCGGTTTTTTGG+TGG | + | chr8_2:46483325-46483344 | None:intergenic | 35.0% |
| TCAAGCCTGAAAATCCATTT+CGG | + | chr8_2:46483336-46483355 | None:intergenic | 35.0% | |
| ! | AAAAATTGATGGCATTGCAG+TGG | - | chr8_2:46483399-46483418 | Msa1250750:CDS | 35.0% |
| ! | AAAATTGATGGCATTGCAGT+GGG | - | chr8_2:46483400-46483419 | Msa1250750:CDS | 35.0% |
| GAGTTGAGTAAACAGTTAAG+AGG | + | chr8_2:46482461-46482480 | None:intergenic | 35.0% | |
| ATATTTACAACGTAGAGACC+GGG | + | chr8_2:46482545-46482564 | None:intergenic | 35.0% | |
| GATATTTACAACGTAGAGAC+CGG | + | chr8_2:46482546-46482565 | None:intergenic | 35.0% | |
| ! | GCTTTATTGGATTCATGTCA+TGG | - | chr8_2:46482644-46482663 | Msa1250750:CDS | 35.0% |
| GGCATATTACTGCTTTGTAA+AGG | - | chr8_2:46482665-46482684 | Msa1250750:CDS | 35.0% | |
| TAAAGCAGGACTTAAGGATA+GGG | + | chr8_2:46482715-46482734 | None:intergenic | 35.0% | |
| TTAAAGCAGGACTTAAGGAT+AGG | + | chr8_2:46482716-46482735 | None:intergenic | 35.0% | |
| TTTGAAGGAGTGGGATAAAT+TGG | + | chr8_2:46482743-46482762 | None:intergenic | 35.0% | |
| ATTTATCCCACTCCTTCAAA+AGG | - | chr8_2:46482743-46482762 | Msa1250750:CDS | 35.0% | |
| !! | ATTGATCCTTTTGAAGGAGT+GGG | + | chr8_2:46482752-46482771 | None:intergenic | 35.0% |
| !! | AATTGATCCTTTTGAAGGAG+TGG | + | chr8_2:46482753-46482772 | None:intergenic | 35.0% |
| CTGTTACGAACAACTTGAAT+TGG | + | chr8_2:46482814-46482833 | None:intergenic | 35.0% | |
| ! | CAGATGTTCTAAATGTTGAG+GGG | - | chr8_2:46482831-46482850 | Msa1250750:CDS | 35.0% |
| ! | AGATGTTCTAAATGTTGAGG+GGG | - | chr8_2:46482832-46482851 | Msa1250750:CDS | 35.0% |
| ! | TTTTACGTCCTAAGAATTGG+AGG | - | chr8_2:46482869-46482888 | Msa1250750:CDS | 35.0% |
| ! | AAGTGATGGAGTTATTGTGA+TGG | - | chr8_2:46483000-46483019 | Msa1250750:CDS | 35.0% |
| !! | TTATTGTGATGGATGTTGAC+AGG | - | chr8_2:46483011-46483030 | Msa1250750:CDS | 35.0% |
| !! | TATTGTGATGGATGTTGACA+GGG | - | chr8_2:46483012-46483031 | Msa1250750:CDS | 35.0% |
| GTTGACAGGGAAATTCTTAT+AGG | - | chr8_2:46483025-46483044 | Msa1250750:CDS | 35.0% | |
| CAAGTAGCTTCGTAATCAAA+AGG | + | chr8_2:46483208-46483227 | None:intergenic | 35.0% | |
| TTTGATTACGAAGCTACTTG+CGG | - | chr8_2:46483208-46483227 | Msa1250750:CDS | 35.0% | |
| AATCCACCAAAAAACCGAAA+TGG | - | chr8_2:46483319-46483338 | Msa1250750:CDS | 35.0% | |
| !!! | AATCCATTTCGGTTTTTTGG+TGG | + | chr8_2:46483325-46483344 | None:intergenic | 35.0% |
| TCAAGCCTGAAAATCCATTT+CGG | + | chr8_2:46483336-46483355 | None:intergenic | 35.0% | |
| ! | AAAAATTGATGGCATTGCAG+TGG | - | chr8_2:46483399-46483418 | Msa1250750:CDS | 35.0% |
| ! | AAAATTGATGGCATTGCAGT+GGG | - | chr8_2:46483400-46483419 | Msa1250750:CDS | 35.0% |
| ACTGTTTACTCAACTCTGCA+AGG | - | chr8_2:46482465-46482484 | Msa1250750:CDS | 40.0% | |
| CAAGGTATGTCTCCAAACAT+TGG | - | chr8_2:46482483-46482502 | Msa1250750:CDS | 40.0% | |
| TGTGTCCATTGACATGATCT+AGG | + | chr8_2:46482592-46482611 | None:intergenic | 40.0% | |
| TTTCGGAACGCCTTCAAAAA+TGG | - | chr8_2:46482619-46482638 | Msa1250750:CDS | 40.0% | |
| TTCGGAACGCCTTCAAAAAT+GGG | - | chr8_2:46482620-46482639 | Msa1250750:CDS | 40.0% | |
| AACTTGAATTGGGCAGTGTT+GGG | + | chr8_2:46482803-46482822 | None:intergenic | 40.0% | |
| GATCAACTCCTCCAATTCTT+AGG | + | chr8_2:46482880-46482899 | None:intergenic | 40.0% | |
| ACCAGTAAATTCTCCTCTGT+GGG | - | chr8_2:46483069-46483088 | Msa1250750:CDS | 40.0% | |
| GATCGTCTTTCTTGGATTCA+AGG | - | chr8_2:46483112-46483131 | Msa1250750:CDS | 40.0% | |
| ACTGTTTACTCAACTCTGCA+AGG | - | chr8_2:46482465-46482484 | Msa1250750:CDS | 40.0% | |
| CAAGGTATGTCTCCAAACAT+TGG | - | chr8_2:46482483-46482502 | Msa1250750:CDS | 40.0% | |
| TGTGTCCATTGACATGATCT+AGG | + | chr8_2:46482592-46482611 | None:intergenic | 40.0% | |
| TTTCGGAACGCCTTCAAAAA+TGG | - | chr8_2:46482619-46482638 | Msa1250750:CDS | 40.0% | |
| TTCGGAACGCCTTCAAAAAT+GGG | - | chr8_2:46482620-46482639 | Msa1250750:CDS | 40.0% | |
| AACTTGAATTGGGCAGTGTT+GGG | + | chr8_2:46482803-46482822 | None:intergenic | 40.0% | |
| GATCAACTCCTCCAATTCTT+AGG | + | chr8_2:46482880-46482899 | None:intergenic | 40.0% | |
| ACCAGTAAATTCTCCTCTGT+GGG | - | chr8_2:46483069-46483088 | Msa1250750:CDS | 40.0% | |
| GATCGTCTTTCTTGGATTCA+AGG | - | chr8_2:46483112-46483131 | Msa1250750:CDS | 40.0% | |
| TAGCAAGCATCACGTCTTGA+GGG | + | chr8_2:46482424-46482443 | None:intergenic | 45.0% | |
| ATAGCAAGCATCACGTCTTG+AGG | + | chr8_2:46482425-46482444 | None:intergenic | 45.0% | |
| CAACTTGAATTGGGCAGTGT+TGG | + | chr8_2:46482804-46482823 | None:intergenic | 45.0% | |
| TAAATGTTGAGGGGGTCGAT+TGG | - | chr8_2:46482840-46482859 | Msa1250750:CDS | 45.0% | |
| ! | TTGGAGGAGTTGATCACACA+TGG | - | chr8_2:46482885-46482904 | Msa1250750:CDS | 45.0% |
| ! | TGGAGGAGTTGATCACACAT+GGG | - | chr8_2:46482886-46482905 | Msa1250750:CDS | 45.0% |
| AGGAGAATTTACTGGTGGAG+GGG | + | chr8_2:46483065-46483084 | None:intergenic | 45.0% | |
| GAGGAGAATTTACTGGTGGA+GGG | + | chr8_2:46483066-46483085 | None:intergenic | 45.0% | |
| AGAGGAGAATTTACTGGTGG+AGG | + | chr8_2:46483067-46483086 | None:intergenic | 45.0% | |
| CACAGAGGAGAATTTACTGG+TGG | + | chr8_2:46483070-46483089 | None:intergenic | 45.0% | |
| CACCAGTAAATTCTCCTCTG+TGG | - | chr8_2:46483068-46483087 | Msa1250750:CDS | 45.0% | |
| CCAGTAAATTCTCCTCTGTG+GGG | - | chr8_2:46483070-46483089 | Msa1250750:CDS | 45.0% | |
| CAGTAAATTCTCCTCTGTGG+GGG | - | chr8_2:46483071-46483090 | Msa1250750:CDS | 45.0% | |
| AGTAAATTCTCCTCTGTGGG+GGG | - | chr8_2:46483072-46483091 | Msa1250750:CDS | 45.0% | |
| !! | TGGGGGGTTGTTTTATGGAT+GGG | - | chr8_2:46483088-46483107 | Msa1250750:CDS | 45.0% |
| ! | TGTGCGCGATTTTTCGTTTC+TGG | - | chr8_2:46483263-46483282 | Msa1250750:CDS | 45.0% |
| CATTGCAGTGGGCAATTATG+AGG | - | chr8_2:46483411-46483430 | Msa1250750:CDS | 45.0% | |
| TGGCAACGAAACTAGAGTGT+TGG | + | chr8_2:46483449-46483468 | None:intergenic | 45.0% | |
| TAGCAAGCATCACGTCTTGA+GGG | + | chr8_2:46482424-46482443 | None:intergenic | 45.0% | |
| ATAGCAAGCATCACGTCTTG+AGG | + | chr8_2:46482425-46482444 | None:intergenic | 45.0% | |
| CAACTTGAATTGGGCAGTGT+TGG | + | chr8_2:46482804-46482823 | None:intergenic | 45.0% | |
| TAAATGTTGAGGGGGTCGAT+TGG | - | chr8_2:46482840-46482859 | Msa1250750:CDS | 45.0% | |
| ! | TTGGAGGAGTTGATCACACA+TGG | - | chr8_2:46482885-46482904 | Msa1250750:CDS | 45.0% |
| ! | TGGAGGAGTTGATCACACAT+GGG | - | chr8_2:46482886-46482905 | Msa1250750:CDS | 45.0% |
| AGGAGAATTTACTGGTGGAG+GGG | + | chr8_2:46483065-46483084 | None:intergenic | 45.0% | |
| GAGGAGAATTTACTGGTGGA+GGG | + | chr8_2:46483066-46483085 | None:intergenic | 45.0% | |
| AGAGGAGAATTTACTGGTGG+AGG | + | chr8_2:46483067-46483086 | None:intergenic | 45.0% | |
| CACAGAGGAGAATTTACTGG+TGG | + | chr8_2:46483070-46483089 | None:intergenic | 45.0% | |
| CACCAGTAAATTCTCCTCTG+TGG | - | chr8_2:46483068-46483087 | Msa1250750:CDS | 45.0% | |
| CCAGTAAATTCTCCTCTGTG+GGG | - | chr8_2:46483070-46483089 | Msa1250750:CDS | 45.0% | |
| CAGTAAATTCTCCTCTGTGG+GGG | - | chr8_2:46483071-46483090 | Msa1250750:CDS | 45.0% | |
| AGTAAATTCTCCTCTGTGGG+GGG | - | chr8_2:46483072-46483091 | Msa1250750:CDS | 45.0% | |
| !! | TGGGGGGTTGTTTTATGGAT+GGG | - | chr8_2:46483088-46483107 | Msa1250750:CDS | 45.0% |
| ! | TGTGCGCGATTTTTCGTTTC+TGG | - | chr8_2:46483263-46483282 | Msa1250750:CDS | 45.0% |
| CATTGCAGTGGGCAATTATG+AGG | - | chr8_2:46483411-46483430 | Msa1250750:CDS | 45.0% | |
| TGGCAACGAAACTAGAGTGT+TGG | + | chr8_2:46483449-46483468 | None:intergenic | 45.0% | |
| TTTACAACGTAGAGACCGGG+TGG | + | chr8_2:46482542-46482561 | None:intergenic | 50.0% | |
| GAGAATTTACTGGTGGAGGG+GGG | + | chr8_2:46483063-46483082 | None:intergenic | 50.0% | |
| GGAGAATTTACTGGTGGAGG+GGG | + | chr8_2:46483064-46483083 | None:intergenic | 50.0% | |
| CCCCACAGAGGAGAATTTAC+TGG | + | chr8_2:46483073-46483092 | None:intergenic | 50.0% | |
| CATAAAACAACCCCCCACAG+AGG | + | chr8_2:46483085-46483104 | None:intergenic | 50.0% | |
| !! | CTCTGTGGGGGGTTGTTTTA+TGG | - | chr8_2:46483083-46483102 | Msa1250750:CDS | 50.0% |
| !! | GTGGGGGGTTGTTTTATGGA+TGG | - | chr8_2:46483087-46483106 | Msa1250750:CDS | 50.0% |
| GGATGGGAGATCGTCTTTCT+TGG | - | chr8_2:46483104-46483123 | Msa1250750:CDS | 50.0% | |
| CAGTGGGCAATTATGAGGCA+TGG | - | chr8_2:46483416-46483435 | Msa1250750:CDS | 50.0% | |
| TTTACAACGTAGAGACCGGG+TGG | + | chr8_2:46482542-46482561 | None:intergenic | 50.0% | |
| GAGAATTTACTGGTGGAGGG+GGG | + | chr8_2:46483063-46483082 | None:intergenic | 50.0% | |
| GGAGAATTTACTGGTGGAGG+GGG | + | chr8_2:46483064-46483083 | None:intergenic | 50.0% | |
| CCCCACAGAGGAGAATTTAC+TGG | + | chr8_2:46483073-46483092 | None:intergenic | 50.0% | |
| CATAAAACAACCCCCCACAG+AGG | + | chr8_2:46483085-46483104 | None:intergenic | 50.0% | |
| !! | CTCTGTGGGGGGTTGTTTTA+TGG | - | chr8_2:46483083-46483102 | Msa1250750:CDS | 50.0% |
| !! | GTGGGGGGTTGTTTTATGGA+TGG | - | chr8_2:46483087-46483106 | Msa1250750:CDS | 50.0% |
| GGATGGGAGATCGTCTTTCT+TGG | - | chr8_2:46483104-46483123 | Msa1250750:CDS | 50.0% | |
| CAGTGGGCAATTATGAGGCA+TGG | - | chr8_2:46483416-46483435 | Msa1250750:CDS | 50.0% | |
| ! | GGTTTAAGACGCAGGCAGGA+TGG | + | chr8_2:46482521-46482540 | None:intergenic | 55.0% |
| TGCCTGCGTCTTAAACCACC+CGG | - | chr8_2:46482524-46482543 | Msa1250750:CDS | 55.0% | |
| AGCTACTTGCGGCCACAAAC+TGG | - | chr8_2:46483219-46483238 | Msa1250750:CDS | 55.0% | |
| ! | GGTTTAAGACGCAGGCAGGA+TGG | + | chr8_2:46482521-46482540 | None:intergenic | 55.0% |
| TGCCTGCGTCTTAAACCACC+CGG | - | chr8_2:46482524-46482543 | Msa1250750:CDS | 55.0% | |
| AGCTACTTGCGGCCACAAAC+TGG | - | chr8_2:46483219-46483238 | Msa1250750:CDS | 55.0% | |
| ! | GGGTGGTTTAAGACGCAGGC+AGG | + | chr8_2:46482525-46482544 | None:intergenic | 60.0% |
| ! | GACCGGGTGGTTTAAGACGC+AGG | + | chr8_2:46482529-46482548 | None:intergenic | 60.0% |
| TTTACTGGTGGAGGGGGGAG+TGG | + | chr8_2:46483058-46483077 | None:intergenic | 60.0% | |
| ! | GGGTGGTTTAAGACGCAGGC+AGG | + | chr8_2:46482525-46482544 | None:intergenic | 60.0% |
| ! | GACCGGGTGGTTTAAGACGC+AGG | + | chr8_2:46482529-46482548 | None:intergenic | 60.0% |
| TTTACTGGTGGAGGGGGGAG+TGG | + | chr8_2:46483058-46483077 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 46482278 | 46483483 | 46482278 | ID=Msa1250750;Name=Msa1250750 |
| chr8_2 | mRNA | 46482278 | 46483483 | 46482278 | ID=Msa1250750-mRNA-1;Parent=Msa1250750;Name=Msa1250750-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|401 |
| chr8_2 | exon | 46482278 | 46483483 | 46482278 | ID=Msa1250750-mRNA-1:exon:14000;Parent=Msa1250750-mRNA-1 |
| chr8_2 | CDS | 46482278 | 46483483 | 46482278 | ID=Msa1250750-mRNA-1:cds;Parent=Msa1250750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
