Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308950 | XP_013443850.1 | 94.132 | 409 | 24 | 0 | 1 | 409 | 1 | 409 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308950 | sp|O23179|PLP1_ARATH | 45.780 | 391 | 182 | 8 | 21 | 383 | 7 | 395 | 4.63e-103 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308950 | A0A072TWK0 | 94.132 | 409 | 24 | 0 | 1 | 409 | 1 | 409 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0634270 | Msa1308950 | 0.810059 | 1.391299e-50 | -8.615850e-47 |
| Msa0642910 | Msa1308950 | 0.803796 | 2.938676e-49 | -8.615850e-47 |
| Msa0716790 | Msa1308950 | 0.809035 | 2.308398e-50 | -8.615850e-47 |
| Msa0722940 | Msa1308950 | 0.809184 | 2.145273e-50 | -8.615850e-47 |
| Msa0723150 | Msa1308950 | 0.815284 | 1.000389e-51 | -8.615850e-47 |
| Msa0810020 | Msa1308950 | 0.806460 | 8.138755e-50 | -8.615850e-47 |
| Msa0219190 | Msa1308950 | 0.800121 | 1.671882e-48 | -8.615850e-47 |
| Msa1258810 | Msa1308950 | 0.811141 | 8.120355e-51 | -8.615850e-47 |
| Msa1308950 | Msa1355400 | 0.818160 | 2.266402e-52 | -8.615850e-47 |
| Msa1308950 | Msa1367410 | 0.817759 | 2.790991e-52 | -8.615850e-47 |
| Msa1308950 | Msa1379990 | 0.806862 | 6.692617e-50 | -8.615850e-47 |
| Msa1308950 | Msa1382720 | 0.800699 | 1.275222e-48 | -8.615850e-47 |
| Msa1308950 | Msa1417650 | 0.804999 | 1.649607e-49 | -8.615850e-47 |
| Msa1308950 | Msa1420060 | 0.820802 | 5.657718e-53 | -8.615850e-47 |
| Msa1308950 | Msa1425060 | 0.805932 | 1.051112e-49 | -8.615850e-47 |
| Msa0370600 | Msa1308950 | 0.807726 | 4.391473e-50 | -8.615850e-47 |
| Msa0378340 | Msa1308950 | 0.806694 | 7.265267e-50 | -8.615850e-47 |
| Msa0408640 | Msa1308950 | 0.844688 | 6.475377e-59 | -8.615850e-47 |
| Msa0418200 | Msa1308950 | 0.815465 | 9.119526e-52 | -8.615850e-47 |
| Msa0427690 | Msa1308950 | 0.809376 | 1.951130e-50 | -8.615850e-47 |
| Msa0464540 | Msa1308950 | 0.807057 | 6.086811e-50 | -8.615850e-47 |
| Msa1061500 | Msa1308950 | 0.818841 | 1.588194e-52 | -8.615850e-47 |
| Msa1106810 | Msa1308950 | 0.803447 | 3.470861e-49 | -8.615850e-47 |
| Msa0361260 | Msa1308950 | 0.828883 | 7.019338e-55 | -8.615850e-47 |
| Msa1130690 | Msa1308950 | 0.811264 | 7.635983e-51 | -8.615850e-47 |
| Msa1160400 | Msa1308950 | 0.804989 | 1.657119e-49 | -8.615850e-47 |
| Msa0518520 | Msa1308950 | 0.807814 | 4.205582e-50 | -8.615850e-47 |
| Msa0524210 | Msa1308950 | 0.806710 | 7.208091e-50 | -8.615850e-47 |
| Msa0538570 | Msa1308950 | 0.810777 | 9.738566e-51 | -8.615850e-47 |
| Msa0594390 | Msa1308950 | 0.814969 | 1.174958e-51 | -8.615850e-47 |
| Msa0850500 | Msa1308950 | 0.801557 | 8.514145e-49 | -8.615850e-47 |
| Msa0873190 | Msa1308950 | 0.810468 | 1.135772e-50 | -8.615850e-47 |
| Msa0905550 | Msa1308950 | 0.802998 | 4.299840e-49 | -8.615850e-47 |
| Msa0931480 | Msa1308950 | 0.809128 | 2.204869e-50 | -8.615850e-47 |
| Msa0937550 | Msa1308950 | 0.808993 | 2.357471e-50 | -8.615850e-47 |
| Msa0974750 | Msa1308950 | 0.812173 | 4.843145e-51 | -8.615850e-47 |
| Msa0979550 | Msa1308950 | 0.805640 | 1.210767e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308950 | MtrunA17_Chr8g0335651 | 94.132 | 409 | 24 | 0 | 1 | 409 | 1 | 409 | 0.0 | 759 |
| Msa1308950 | MtrunA17_Chr8g0335621 | 58.034 | 417 | 151 | 12 | 5 | 402 | 35 | 446 | 1.28e-154 | 444 |
| Msa1308950 | MtrunA17_Chr8g0335611 | 56.872 | 422 | 154 | 12 | 5 | 402 | 4 | 421 | 6.80e-154 | 441 |
| Msa1308950 | MtrunA17_Chr8g0335591 | 54.869 | 421 | 162 | 10 | 5 | 405 | 4 | 416 | 1.30e-145 | 420 |
| Msa1308950 | MtrunA17_Chr8g0335581 | 54.390 | 410 | 160 | 9 | 17 | 405 | 5 | 408 | 1.52e-143 | 414 |
| Msa1308950 | MtrunA17_Chr8g0335631 | 57.457 | 409 | 152 | 8 | 5 | 397 | 4 | 406 | 3.16e-141 | 409 |
| Msa1308950 | MtrunA17_Chr1g0153781 | 47.194 | 392 | 175 | 8 | 22 | 383 | 10 | 399 | 2.75e-107 | 322 |
| Msa1308950 | MtrunA17_Chr3g0133691 | 46.530 | 389 | 178 | 7 | 23 | 383 | 10 | 396 | 1.41e-98 | 300 |
| Msa1308950 | MtrunA17_Chr3g0133681 | 46.530 | 389 | 178 | 7 | 23 | 383 | 10 | 396 | 7.45e-97 | 295 |
| Msa1308950 | MtrunA17_Chr5g0402441 | 43.750 | 384 | 186 | 9 | 31 | 385 | 14 | 396 | 3.71e-96 | 293 |
| Msa1308950 | MtrunA17_Chr5g0402451 | 43.307 | 381 | 188 | 6 | 31 | 383 | 8 | 388 | 2.27e-94 | 288 |
| Msa1308950 | MtrunA17_Chr1g0199801 | 30.130 | 385 | 221 | 16 | 33 | 383 | 75 | 445 | 3.28e-32 | 127 |
| Msa1308950 | MtrunA17_Chr1g0185551 | 31.489 | 235 | 144 | 7 | 35 | 254 | 32 | 264 | 3.07e-27 | 111 |
| Msa1308950 | MtrunA17_Chr7g0259871 | 30.932 | 236 | 144 | 7 | 35 | 254 | 32 | 264 | 1.29e-24 | 104 |
| Msa1308950 | MtrunA17_Chr2g0292051 | 27.901 | 362 | 222 | 14 | 33 | 383 | 69 | 402 | 6.14e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308950 | AT4G37070.2 | 45.780 | 391 | 182 | 8 | 21 | 383 | 7 | 395 | 4.71e-104 | 314 |
| Msa1308950 | AT2G26560.1 | 47.423 | 388 | 173 | 8 | 24 | 383 | 10 | 394 | 2.66e-103 | 312 |
| Msa1308950 | AT4G37070.3 | 45.910 | 379 | 175 | 8 | 21 | 371 | 7 | 383 | 2.14e-100 | 304 |
| Msa1308950 | AT4G37070.1 | 45.910 | 379 | 175 | 8 | 21 | 371 | 7 | 383 | 2.14e-100 | 304 |
| Msa1308950 | AT4G37060.1 | 43.797 | 395 | 192 | 7 | 26 | 392 | 12 | 404 | 1.69e-98 | 300 |
| Msa1308950 | AT4G37070.4 | 44.180 | 378 | 172 | 8 | 21 | 371 | 7 | 372 | 8.91e-94 | 286 |
| Msa1308950 | AT4G37060.2 | 40.141 | 426 | 194 | 7 | 26 | 392 | 12 | 435 | 1.44e-92 | 286 |
| Msa1308950 | AT4G37050.1 | 44.388 | 392 | 184 | 9 | 26 | 383 | 28 | 419 | 1.06e-87 | 273 |
| Msa1308950 | AT5G43590.1 | 44.909 | 383 | 184 | 9 | 26 | 383 | 7 | 387 | 2.80e-84 | 263 |
| Msa1308950 | AT5G43590.2 | 44.909 | 383 | 184 | 9 | 26 | 383 | 74 | 454 | 1.40e-83 | 263 |
| Msa1308950 | AT3G54950.1 | 31.500 | 400 | 237 | 16 | 11 | 383 | 66 | 455 | 4.77e-38 | 144 |
| Msa1308950 | AT2G39220.1 | 31.635 | 373 | 221 | 16 | 33 | 383 | 108 | 468 | 3.43e-35 | 136 |
| Msa1308950 | AT3G63200.1 | 33.473 | 239 | 130 | 9 | 35 | 253 | 32 | 261 | 1.47e-28 | 115 |
| Msa1308950 | AT4G29800.2 | 28.756 | 386 | 227 | 15 | 33 | 383 | 121 | 493 | 6.77e-25 | 107 |
| Msa1308950 | AT4G29800.1 | 28.421 | 380 | 235 | 13 | 33 | 383 | 121 | 492 | 8.33e-24 | 103 |
Find 94 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATTTCTTTGTATTTAT+TGG | 0.156371 | 8_4:-5338142 | Msa1308950:three_prime_UTR |
| TTCAATTCTCAGCAGCATTT+TGG | 0.185373 | 8_4:-5339274 | Msa1308950:CDS |
| ACCATCATTTGCAAAGTAAT+AGG | 0.269053 | 8_4:+5339589 | None:intergenic |
| TGAAAACTACCTTAGAATTC+AGG | 0.285893 | 8_4:-5339156 | Msa1308950:intron |
| TTAAAGTTTGAGAAAATAAC+TGG | 0.293376 | 8_4:+5339793 | None:intergenic |
| CCACTTGGAAAAGGCTCTTC+AGG | 0.321311 | 8_4:-5342612 | Msa1308950:intron |
| TATAGGATGTGGAGCTAAAA+TGG | 0.330220 | 8_4:-5339324 | Msa1308950:CDS |
| AGAGGACGAGTAGGGTCATT+TGG | 0.330231 | 8_4:+5341717 | None:intergenic |
| ATCAACTTCTACAACAAATA+TGG | 0.331381 | 8_4:-5341675 | Msa1308950:CDS |
| TGATGGTGCTGAATTCAATT+TGG | 0.335440 | 8_4:-5339573 | Msa1308950:CDS |
| ATTGATGGTGGTGGTATTAG+AGG | 0.339376 | 8_4:-5342659 | Msa1308950:CDS |
| TGTGGAGCTAAAATGGTTAC+AGG | 0.363590 | 8_4:-5339317 | Msa1308950:CDS |
| TTTGCTAGTCAGTTTATTGC+TGG | 0.376518 | 8_4:-5342737 | Msa1308950:CDS |
| GCTGAATTCAATTTGGTTGA+TGG | 0.381802 | 8_4:-5339566 | Msa1308950:CDS |
| CCCTATTACTTTGCAAATGA+TGG | 0.384987 | 8_4:-5339590 | Msa1308950:CDS |
| TGATTGTATGTATGTTTAGT+TGG | 0.388287 | 8_4:-5338081 | Msa1308950:three_prime_UTR |
| CTAGTTTGATTGAATATTGA+AGG | 0.394564 | 8_4:+5341651 | None:intergenic |
| AAGATCTTGTTGTTGTCTAT+AGG | 0.395144 | 8_4:-5339341 | Msa1308950:CDS |
| GCATATCAATAAATAATTTG+TGG | 0.404688 | 8_4:-5338193 | Msa1308950:three_prime_UTR |
| CCTTAACTTGTAGTAGCAAA+AGG | 0.405709 | 8_4:+5338300 | None:intergenic |
| TCAAAACTGGTTTGCTCAGA+AGG | 0.410182 | 8_4:+5338490 | None:intergenic |
| TATACTATACCTGAATTCTA+AGG | 0.412151 | 8_4:+5339147 | None:intergenic |
| GTGATTACATTTCCATAGGT+TGG | 0.416976 | 8_4:+5342692 | None:intergenic |
| CAAAGAGAAGCAGCTTCGTC+TGG | 0.425004 | 8_4:-5338379 | Msa1308950:CDS |
| TTGAACATTATACAGTTGTT+GGG | 0.425089 | 8_4:-5339950 | Msa1308950:intron |
| CCATCATTTGCAAAGTAATA+GGG | 0.426380 | 8_4:+5339590 | None:intergenic |
| AAGTGGTCAAGAATTATTGC+TGG | 0.426493 | 8_4:+5342629 | None:intergenic |
| TAATGCTACACAAGCAAACT+TGG | 0.433145 | 8_4:-5338538 | Msa1308950:CDS |
| AAGAACTTGCCGTCATACTT+TGG | 0.438213 | 8_4:+5339910 | None:intergenic |
| TAATAGGGTGGTAGATAAGT+TGG | 0.438851 | 8_4:+5339605 | None:intergenic |
| ATCACCATTCTCAGTATTGA+TGG | 0.441301 | 8_4:-5342674 | Msa1308950:CDS |
| TGCTGAGGCTCTTGAAAAGT+TGG | 0.441624 | 8_4:-5338415 | Msa1308950:CDS |
| AGCAATAATTCTTGACCACT+TGG | 0.445434 | 8_4:-5342627 | Msa1308950:CDS |
| AATTCTTGACCACTTGGAAA+AGG | 0.448564 | 8_4:-5342621 | Msa1308950:CDS |
| GAGGACGAGTAGGGTCATTT+GGG | 0.449668 | 8_4:+5341718 | None:intergenic |
| ATTTCTTTGTATTTATTGGT+TGG | 0.450945 | 8_4:-5338138 | Msa1308950:three_prime_UTR |
| GCAACATCTGGTCTTGCAAC+TGG | 0.461298 | 8_4:-5339251 | Msa1308950:CDS |
| TTGGAGGCCTGGGAAGACTT+TGG | 0.467829 | 8_4:+5339184 | None:intergenic |
| ATTTCTTGATGTCGAATGTT+GGG | 0.470399 | 8_4:+5339821 | None:intergenic |
| TTTCAGAATATTGGAGGCCT+GGG | 0.477272 | 8_4:+5339174 | None:intergenic |
| GAGCCTCAGCATTTGTACCT+TGG | 0.477300 | 8_4:+5338427 | None:intergenic |
| TAGAAGTTGATTACTTCTGC+AGG | 0.478057 | 8_4:+5341687 | None:intergenic |
| TATAGACAACAACAAGATCT+TGG | 0.483030 | 8_4:+5339343 | None:intergenic |
| GAGCTACCACCTCCAACCTA+TGG | 0.487732 | 8_4:-5342704 | Msa1308950:CDS |
| TCTGGAAAAGAAATTGATCA+TGG | 0.488875 | 8_4:-5338361 | Msa1308950:CDS |
| GAATGTTGGGATTACAACAT+TGG | 0.489373 | 8_4:+5339834 | None:intergenic |
| GTGATAGCTGGGACTAGTAC+TGG | 0.495058 | 8_4:-5341774 | Msa1308950:CDS |
| CTTCAATATTCAATCAAACT+AGG | 0.502447 | 8_4:-5341650 | Msa1308950:intron |
| AATGGTGATTACATTTCCAT+AGG | 0.502697 | 8_4:+5342688 | None:intergenic |
| TACCTTGCCAAAGTCTTCCC+AGG | 0.511516 | 8_4:-5339191 | Msa1308950:CDS |
| GGATCCATCCATGGATTCCA+TGG | 0.511524 | 8_4:-5338562 | Msa1308950:CDS |
| TTGTTGTTGTCTATAGGATG+TGG | 0.516995 | 8_4:-5339335 | Msa1308950:CDS |
| CTTAACTTGTAGTAGCAAAA+GGG | 0.520243 | 8_4:+5338301 | None:intergenic |
| ACCACCATCAATACTGAGAA+TGG | 0.522131 | 8_4:+5342670 | None:intergenic |
| TGCTTGTGTAGCATTATCCA+TGG | 0.528981 | 8_4:+5338545 | None:intergenic |
| ACTTCTGCAGGTGTAAATAG+AGG | 0.531060 | 8_4:+5341699 | None:intergenic |
| AATTTCTTGATGTCGAATGT+TGG | 0.532437 | 8_4:+5339820 | None:intergenic |
| TTGCCGTCATACTTTGGACC+CGG | 0.533505 | 8_4:+5339916 | None:intergenic |
| TTGATGGTGGTGGTATTAGA+GGG | 0.533729 | 8_4:-5342658 | Msa1308950:CDS |
| GGTGTAAATAGAGGACGAGT+AGG | 0.537394 | 8_4:+5341708 | None:intergenic |
| AGCATTATCCATGGAATCCA+TGG | 0.538932 | 8_4:+5338554 | None:intergenic |
| AAATTGTCAGATATATGCAT+TGG | 0.540624 | 8_4:-5339641 | Msa1308950:CDS |
| ATTACATTTCCATAGGTTGG+AGG | 0.542243 | 8_4:+5342695 | None:intergenic |
| TAATGTGTAGGAATATAACT+TGG | 0.549716 | 8_4:-5338583 | Msa1308950:intron |
| TGAAGTGATAAAACAGCAGA+AGG | 0.558437 | 8_4:-5339375 | Msa1308950:CDS |
| AGGTGTGGCTGCATGTAATC+CGG | 0.561900 | 8_4:-5339543 | Msa1308950:intron |
| ACATTTCCATAGGTTGGAGG+TGG | 0.563266 | 8_4:+5342698 | None:intergenic |
| TTGGAAAATCTTGCAAAGGT+AGG | 0.567119 | 8_4:-5338519 | Msa1308950:CDS |
| CAATTTGGTTGATGGAGGTG+TGG | 0.567512 | 8_4:-5339558 | Msa1308950:CDS |
| TGCCGTCATACTTTGGACCC+GGG | 0.573615 | 8_4:+5339917 | None:intergenic |
| AAGTGATAAAACAGCAGAAG+GGG | 0.577162 | 8_4:-5339373 | Msa1308950:CDS |
| ATATAACTTGGATCCATCCA+TGG | 0.582027 | 8_4:-5338571 | Msa1308950:CDS |
| CGAGTAGGGTCATTTGGGTG+AGG | 0.582448 | 8_4:+5341723 | None:intergenic |
| TTGTTGGGATGCTACATACC+CGG | 0.590159 | 8_4:-5339935 | Msa1308950:CDS |
| ATTCTCAGTATTGATGGTGG+TGG | 0.592026 | 8_4:-5342668 | Msa1308950:CDS |
| GATAAAACAGCAGAAGGGGA+AGG | 0.597486 | 8_4:-5339369 | Msa1308950:CDS |
| AATGTGATAGTTTCAAGAAG+TGG | 0.598372 | 8_4:+5338324 | None:intergenic |
| GAATTCAATTTGGTTGATGG+AGG | 0.600308 | 8_4:-5339563 | Msa1308950:CDS |
| AAACTTGGAAAATCTTGCAA+AGG | 0.605492 | 8_4:-5338523 | Msa1308950:CDS |
| GTGTAAATAGAGGACGAGTA+GGG | 0.607536 | 8_4:+5341709 | None:intergenic |
| TTATCCATGGAATCCATGGA+TGG | 0.623832 | 8_4:+5338558 | None:intergenic |
| TGTTGGGATGCTACATACCC+GGG | 0.628193 | 8_4:-5339934 | Msa1308950:CDS |
| GAAGTGATAAAACAGCAGAA+GGG | 0.631004 | 8_4:-5339374 | Msa1308950:CDS |
| ACTGGTAGTTATGATAATGC+TGG | 0.633459 | 8_4:-5339233 | Msa1308950:CDS |
| TGTAGATACCAATGTGCCAG+AGG | 0.633921 | 8_4:-5338460 | Msa1308950:CDS |
| ATAGCTGGGACTAGTACTGG+AGG | 0.646202 | 8_4:-5341771 | Msa1308950:CDS |
| TACCCGGGTCCAAAGTATGA+CGG | 0.646210 | 8_4:-5339919 | Msa1308950:CDS |
| GTGGAGCTAAAATGGTTACA+GGG | 0.657226 | 8_4:-5339316 | Msa1308950:CDS |
| ACCATTCTCAGTATTGATGG+TGG | 0.665174 | 8_4:-5342671 | Msa1308950:CDS |
| GGCCTGGGAAGACTTTGGCA+AGG | 0.667341 | 8_4:+5339189 | None:intergenic |
| AAACCAAGGTACAAATGCTG+AGG | 0.674400 | 8_4:-5338430 | Msa1308950:CDS |
| TAGCTGGGACTAGTACTGGA+GGG | 0.677652 | 8_4:-5341770 | Msa1308950:CDS |
| TCATTTGCAAAGTAATAGGG+TGG | 0.677945 | 8_4:+5339593 | None:intergenic |
| AATCAACCGTGAGAAGTACG+TGG | 0.702774 | 8_4:+5338158 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTCTACATTTTAAT+TGG | + | chr8_4:5338560-5338579 | None:intergenic | 10.0% |
| !! | ATAAAAAAGATACAAAAAAA+CGG | + | chr8_4:5338840-5338859 | None:intergenic | 10.0% |
| !! | TGATATAATAATATTGATAA+TGG | - | chr8_4:5338970-5338989 | Msa1308950:intron | 10.0% |
| !!! | GATATAATAATATTGATAAT+GGG | - | chr8_4:5338971-5338990 | Msa1308950:intron | 10.0% |
| !!! | TTTTGAGAATTATTTTTTTT+AGG | - | chr8_4:5339348-5339367 | Msa1308950:CDS | 10.0% |
| !! | AAATGATAAATGTATAAAAT+AGG | + | chr8_4:5340235-5340254 | None:intergenic | 10.0% |
| !! | AATATTAATTATTTGGATTT+AGG | + | chr8_4:5340267-5340286 | None:intergenic | 10.0% |
| !!! | TATAATTTATTTTCTTGAAT+TGG | - | chr8_4:5340604-5340623 | Msa1308950:intron | 10.0% |
| !!! | ATAATTTATTTTCTTGAATT+GGG | - | chr8_4:5340605-5340624 | Msa1308950:intron | 10.0% |
| !! | ATCTTATATATCTTATATAT+TGG | + | chr8_4:5342030-5342049 | None:intergenic | 10.0% |
| !! | GTTTCAAATTTATATATATG+TGG | - | chr8_4:5339770-5339789 | Msa1308950:intron | 15.0% |
| !!! | TTATCAATATTCCATTTTTT+TGG | - | chr8_4:5340051-5340070 | Msa1308950:intron | 15.0% |
| !!! | TATCAATATTCCATTTTTTT+GGG | - | chr8_4:5340052-5340071 | Msa1308950:intron | 15.0% |
| !! | AAAGTAAACCAAAATAAAAA+TGG | - | chr8_4:5340377-5340396 | Msa1308950:intron | 15.0% |
| !!! | AACATTTTCCATTTTTATTT+TGG | + | chr8_4:5340388-5340407 | None:intergenic | 15.0% |
| !! | TCAAGAAAATAAATTATAGT+GGG | + | chr8_4:5340602-5340621 | None:intergenic | 15.0% |
| !! | TTCAAGAAAATAAATTATAG+TGG | + | chr8_4:5340603-5340622 | None:intergenic | 15.0% |
| !!! | TAATTTATTTTCTTGAATTG+GGG | - | chr8_4:5340606-5340625 | Msa1308950:intron | 15.0% |
| !!! | TTTATTGACTCTTTTATTTA+TGG | - | chr8_4:5340730-5340749 | Msa1308950:intron | 15.0% |
| !!! | TTATTGACTCTTTTATTTAT+GGG | - | chr8_4:5340731-5340750 | Msa1308950:intron | 15.0% |
| !!! | TGATAAAATTAGTTTGAATT+TGG | + | chr8_4:5342161-5342180 | None:intergenic | 15.0% |
| !!! | CTCTTTTGAAACAAATATAA+TGG | - | chr8_4:5338094-5338113 | Msa1308950:three_prime_UTR | 20.0% |
| !! | AAGCAAAATAAATAACGAAA+AGG | - | chr8_4:5338521-5338540 | Msa1308950:CDS | 20.0% |
| !! | AAAAAAAAAAAACACACCTT+TGG | + | chr8_4:5338719-5338738 | None:intergenic | 20.0% |
| !! | AATATAACTGCTTAAATATC+AGG | - | chr8_4:5338804-5338823 | Msa1308950:intron | 20.0% |
| !!! | TATACATGCATTATCTTTTT+TGG | - | chr8_4:5339030-5339049 | Msa1308950:intron | 20.0% |
| !!! | TGAGAATTATTTTTTTTAGG+TGG | - | chr8_4:5339351-5339370 | Msa1308950:CDS | 20.0% |
| !!! | TAGTTGAAATATTGACTAAA+TGG | - | chr8_4:5339398-5339417 | Msa1308950:intron | 20.0% |
| !! | ATAAATTGATTATCATTGAG+TGG | + | chr8_4:5339978-5339997 | None:intergenic | 20.0% |
| !!! | ATCAATATTCCATTTTTTTG+GGG | - | chr8_4:5340053-5340072 | Msa1308950:intron | 20.0% |
| !! | TCTCAAAGATACTAAAATAT+GGG | - | chr8_4:5340089-5340108 | Msa1308950:intron | 20.0% |
| !! | GGTCACAATTATAAATAATT+TGG | - | chr8_4:5340142-5340161 | Msa1308950:intron | 20.0% |
| !! | ATTAAAGTGATGAAATTCTT+TGG | - | chr8_4:5340565-5340584 | Msa1308950:intron | 20.0% |
| !!! | AATAAATTATAGTGGGATTT+TGG | + | chr8_4:5340595-5340614 | None:intergenic | 20.0% |
| !!! | AATTTATTTTCTTGAATTGG+GGG | - | chr8_4:5340607-5340626 | Msa1308950:intron | 20.0% |
| !!! | AAAGTGCATGTAATTTTAAT+TGG | + | chr8_4:5340690-5340709 | None:intergenic | 20.0% |
| !! | TTAAAGTTTGAGAAAATAAC+TGG | + | chr8_4:5341093-5341112 | None:intergenic | 20.0% |
| !!! | AGTTATTTTCTCAAACTTTA+AGG | - | chr8_4:5341092-5341111 | Msa1308950:intron | 20.0% |
| !! | ATAACGAGTTAATTAATTAC+CGG | + | chr8_4:5341362-5341381 | None:intergenic | 20.0% |
| !! | AAGCTATAGTTTCTTAAAAA+TGG | + | chr8_4:5341392-5341411 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTCACACAATT+AGG | + | chr8_4:5341928-5341947 | None:intergenic | 20.0% |
| !! | AAATTGATCATGGAAAAATT+GGG | - | chr8_4:5342532-5342551 | Msa1308950:intron | 20.0% |
| !! | GCATATCAATAAATAATTTG+TGG | - | chr8_4:5342690-5342709 | Msa1308950:CDS | 20.0% |
| !!! | GTTGATTTCTTTGTATTTAT+TGG | - | chr8_4:5342741-5342760 | Msa1308950:CDS | 20.0% |
| !! | ATTTCTTTGTATTTATTGGT+TGG | - | chr8_4:5342745-5342764 | Msa1308950:CDS | 20.0% |
| !!! | GGTGTGTTTTTTTTTTTTTG+TGG | - | chr8_4:5338721-5338740 | Msa1308950:intron | 25.0% |
| !!! | GTGTTTTTTTTTTTTTGTGG+TGG | - | chr8_4:5338724-5338743 | Msa1308950:intron | 25.0% |
| ! | ATGCATAATATATGCAAGAT+CGG | + | chr8_4:5338764-5338783 | None:intergenic | 25.0% |
| !!! | AATTATTTTGATGTGATAGC+TGG | - | chr8_4:5339097-5339116 | Msa1308950:intron | 25.0% |
| !!! | ATTATTTTGATGTGATAGCT+GGG | - | chr8_4:5339098-5339117 | Msa1308950:intron | 25.0% |
| ! | ATCAACTTCTACAACAAATA+TGG | - | chr8_4:5339208-5339227 | Msa1308950:CDS | 25.0% |
| ! | CTAGTTTGATTGAATATTGA+AGG | + | chr8_4:5339235-5339254 | None:intergenic | 25.0% |
| ! | CTTCAATATTCAATCAAACT+AGG | - | chr8_4:5339233-5339252 | Msa1308950:CDS | 25.0% |
| ! | TCAAACGAACATATATATAC+AGG | - | chr8_4:5339280-5339299 | Msa1308950:CDS | 25.0% |
| ! | CAAACGAACATATATATACA+GGG | - | chr8_4:5339281-5339300 | Msa1308950:CDS | 25.0% |
| ! | TAATTCTCAAAATTTAGTGC+AGG | + | chr8_4:5339340-5339359 | None:intergenic | 25.0% |
| !! | AACACAAAACACTTTTCTAT+TGG | - | chr8_4:5339430-5339449 | Msa1308950:intron | 25.0% |
| ! | AGATGAATATTGTCAAGAAT+CGG | - | chr8_4:5339473-5339492 | Msa1308950:intron | 25.0% |
| ! | AGATGAATATTGTCAAGAAT+CGG | - | chr8_4:5339473-5339492 | Msa1308950:intron | 25.0% |
| ! | GAGAAAATGTTTCCAAAATA+TGG | - | chr8_4:5339666-5339685 | Msa1308950:CDS | 25.0% |
| !!! | AGAAAGAAATTTTGGAAAGT+GGG | + | chr8_4:5339800-5339819 | None:intergenic | 25.0% |
| ! | GTCTCAAAGATACTAAAATA+TGG | - | chr8_4:5340088-5340107 | Msa1308950:intron | 25.0% |
| !! | ATTTTTATGTGGATGTTTAG+AGG | - | chr8_4:5340503-5340522 | Msa1308950:intron | 25.0% |
| !!! | ATTTATTTTCTTGAATTGGG+GGG | - | chr8_4:5340608-5340627 | Msa1308950:intron | 25.0% |
| !! | AAACTTGATTCGCATATAAA+TGG | + | chr8_4:5340765-5340784 | None:intergenic | 25.0% |
| ! | TTTGAACATTATACAGTTGT+TGG | - | chr8_4:5340932-5340951 | Msa1308950:intron | 25.0% |
| ! | TTGAACATTATACAGTTGTT+GGG | - | chr8_4:5340933-5340952 | Msa1308950:intron | 25.0% |
| ! | AAATTGTCAGATATATGCAT+TGG | - | chr8_4:5341242-5341261 | Msa1308950:intron | 25.0% |
| !! | TAAGGTAGTTTTCAGAATAT+TGG | + | chr8_4:5341721-5341740 | None:intergenic | 25.0% |
| ! | TATACTATACCTGAATTCTA+AGG | + | chr8_4:5341739-5341758 | None:intergenic | 25.0% |
| ! | AACAATGATTAGATTGAGAT+CGG | + | chr8_4:5341902-5341921 | None:intergenic | 25.0% |
| ! | TAATGTGTAGGAATATAACT+TGG | - | chr8_4:5342300-5342319 | Msa1308950:intron | 25.0% |
| !! | TCTACATTCATTTTCAAAAC+TGG | + | chr8_4:5342409-5342428 | None:intergenic | 25.0% |
| ! | GAAATTGATCATGGAAAAAT+TGG | - | chr8_4:5342531-5342550 | Msa1308950:intron | 25.0% |
| CAAAAACGAACACAAACAAA+AGG | + | chr8_4:5338130-5338149 | None:intergenic | 30.0% | |
| AATGGTGATTACATTTCCAT+AGG | + | chr8_4:5338198-5338217 | None:intergenic | 30.0% | |
| !! | CTCTCTAGAATAAAAACCAA+AGG | - | chr8_4:5338700-5338719 | Msa1308950:intron | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | - | chr8_4:5338728-5338747 | Msa1308950:intron | 30.0% |
| TGCATAATATATGCAAGATC+GGG | + | chr8_4:5338763-5338782 | None:intergenic | 30.0% | |
| ! | AAGTGTTTTGTGTTTTGTGT+GGG | + | chr8_4:5339424-5339443 | None:intergenic | 30.0% |
| !! | AAAGTGTTTTGTGTTTTGTG+TGG | + | chr8_4:5339425-5339444 | None:intergenic | 30.0% |
| ! | CTCTATGATTCTCCATATTT+TGG | + | chr8_4:5339681-5339700 | None:intergenic | 30.0% |
| !! | AAAGAAATTTTGGAAAGTGG+GGG | + | chr8_4:5339798-5339817 | None:intergenic | 30.0% |
| !! | GAAAGAAATTTTGGAAAGTG+GGG | + | chr8_4:5339799-5339818 | None:intergenic | 30.0% |
| !! | CAGAAAGAAATTTTGGAAAG+TGG | + | chr8_4:5339801-5339820 | None:intergenic | 30.0% |
| CACTTTCCAAAATTTCTTTC+TGG | - | chr8_4:5339799-5339818 | Msa1308950:CDS | 30.0% | |
| TATATATACACACACAGTGA+CGG | + | chr8_4:5339827-5339846 | None:intergenic | 30.0% | |
| ATTGATTATCATTGAGTGGA+AGG | + | chr8_4:5339974-5339993 | None:intergenic | 30.0% | |
| TTCTACAATCCCCAAAAAAA+TGG | + | chr8_4:5340065-5340084 | None:intergenic | 30.0% | |
| TAAAATATGGGTATACTCCA+AGG | - | chr8_4:5340101-5340120 | Msa1308950:intron | 30.0% | |
| !! | GGTTTACTTTTCAGATCTTA+TGG | + | chr8_4:5340367-5340386 | None:intergenic | 30.0% |
| !! | TTTATTTTCTTGAATTGGGG+GGG | - | chr8_4:5340609-5340628 | Msa1308950:intron | 30.0% |
| AAATCTGTGTATGTAGTATC+TGG | + | chr8_4:5340822-5340841 | None:intergenic | 30.0% | |
| !! | AAAACTGATTTTACGATGTG+AGG | + | chr8_4:5340866-5340885 | None:intergenic | 30.0% |
| ATTTCTTGATGTCGAATGTT+GGG | + | chr8_4:5341065-5341084 | None:intergenic | 30.0% | |
| AATTTCTTGATGTCGAATGT+TGG | + | chr8_4:5341066-5341085 | None:intergenic | 30.0% | |
| ! | TATCTGACAATTTTGCATCT+TGG | + | chr8_4:5341235-5341254 | None:intergenic | 30.0% |
| CCATCATTTGCAAAGTAATA+GGG | + | chr8_4:5341296-5341315 | None:intergenic | 30.0% | |
| ACCATCATTTGCAAAGTAAT+AGG | + | chr8_4:5341297-5341316 | None:intergenic | 30.0% | |
| GTCTGCAAGATATGATAATT+TGG | + | chr8_4:5341473-5341492 | None:intergenic | 30.0% | |
| TATAGACAACAACAAGATCT+TGG | + | chr8_4:5341543-5341562 | None:intergenic | 30.0% | |
| !! | AAGATCTTGTTGTTGTCTAT+AGG | - | chr8_4:5341542-5341561 | Msa1308950:intron | 30.0% |
| TGAAAACTACCTTAGAATTC+AGG | - | chr8_4:5341727-5341746 | Msa1308950:CDS | 30.0% | |
| TGTAAGAGAGTCATGAAATA+TGG | + | chr8_4:5341967-5341986 | None:intergenic | 30.0% | |
| ! | GAGAGTATAATTTAGTGCAT+AGG | + | chr8_4:5342001-5342020 | None:intergenic | 30.0% |
| AGAAATGTGAAAAATGCAGA+CGG | + | chr8_4:5342053-5342072 | None:intergenic | 30.0% | |
| ACTACAAACAAATGACAGTT+TGG | + | chr8_4:5342130-5342149 | None:intergenic | 30.0% | |
| ! | CATTAGAACGTTTTGTACAT+GGG | + | chr8_4:5342272-5342291 | None:intergenic | 30.0% |
| ! | TCATTAGAACGTTTTGTACA+TGG | + | chr8_4:5342273-5342292 | None:intergenic | 30.0% |
| AATGATCGATCTTAATGTGT+AGG | - | chr8_4:5342288-5342307 | Msa1308950:intron | 30.0% | |
| AAACTTGGAAAATCTTGCAA+AGG | - | chr8_4:5342360-5342379 | Msa1308950:intron | 30.0% | |
| TCTGGAAAAGAAATTGATCA+TGG | - | chr8_4:5342522-5342541 | Msa1308950:intron | 30.0% | |
| AATGTGATAGTTTCAAGAAG+TGG | + | chr8_4:5342562-5342581 | None:intergenic | 30.0% | |
| !! | CTTAACTTGTAGTAGCAAAA+GGG | + | chr8_4:5342585-5342604 | None:intergenic | 30.0% |
| ! | CTTTTGCTACTACAAGTTAA+GGG | - | chr8_4:5342584-5342603 | Msa1308950:intron | 30.0% |
| TTTGCTAGTCAGTTTATTGC+TGG | - | chr8_4:5338146-5338165 | Msa1308950:three_prime_UTR | 35.0% | |
| ! | ATTACATTTCCATAGGTTGG+AGG | + | chr8_4:5338191-5338210 | None:intergenic | 35.0% |
| GTGATTACATTTCCATAGGT+TGG | + | chr8_4:5338194-5338213 | None:intergenic | 35.0% | |
| ! | ATCACCATTCTCAGTATTGA+TGG | - | chr8_4:5338209-5338228 | Msa1308950:three_prime_UTR | 35.0% |
| AAGTGGTCAAGAATTATTGC+TGG | + | chr8_4:5338257-5338276 | None:intergenic | 35.0% | |
| AGCAATAATTCTTGACCACT+TGG | - | chr8_4:5338256-5338275 | Msa1308950:three_prime_UTR | 35.0% | |
| AATTCTTGACCACTTGGAAA+AGG | - | chr8_4:5338262-5338281 | Msa1308950:three_prime_UTR | 35.0% | |
| GAGATTTGAATTATAACGCG+AGG | - | chr8_4:5338406-5338425 | Msa1308950:CDS | 35.0% | |
| ! | TTTTGTGTGTTTGCATTGAG+GGG | + | chr8_4:5338583-5338602 | None:intergenic | 35.0% |
| ! | CTTTTGTGTGTTTGCATTGA+GGG | + | chr8_4:5338584-5338603 | None:intergenic | 35.0% |
| ! | CTTGACGAATAAACTGACTT+CGG | - | chr8_4:5338632-5338651 | Msa1308950:intron | 35.0% |
| ! | TTGACGAATAAACTGACTTC+GGG | - | chr8_4:5338633-5338652 | Msa1308950:intron | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | - | chr8_4:5338729-5338748 | Msa1308950:intron | 35.0% |
| GCATAATATATGCAAGATCG+GGG | + | chr8_4:5338762-5338781 | None:intergenic | 35.0% | |
| TTCCTTATACAAGAATTCCC+CGG | + | chr8_4:5338885-5338904 | None:intergenic | 35.0% | |
| ! | TAGAAGTTGATTACTTCTGC+AGG | + | chr8_4:5339199-5339218 | None:intergenic | 35.0% |
| CGAACATATATATACAGGGA+CGG | - | chr8_4:5339285-5339304 | Msa1308950:CDS | 35.0% | |
| ! | ATCTCAGAGTGTTTATGTGT+GGG | + | chr8_4:5339457-5339476 | None:intergenic | 35.0% |
| ! | AGAGAGAGAGATACTTTTGT+TGG | - | chr8_4:5339633-5339652 | Msa1308950:CDS | 35.0% |
| ! | ACGGATCCAGAAAGAAATTT+TGG | + | chr8_4:5339808-5339827 | None:intergenic | 35.0% |
| ACTCTAATTGAGCACACAAA+AGG | - | chr8_4:5340333-5340352 | Msa1308950:intron | 35.0% | |
| ATTGAGCACACAAAAGGAAA+AGG | - | chr8_4:5340339-5340358 | Msa1308950:intron | 35.0% | |
| ATCTCATCTTCTCTGTACAA+GGG | + | chr8_4:5340437-5340456 | None:intergenic | 35.0% | |
| ! | AAAGAGAAAGTGTGTTTGTG+TGG | - | chr8_4:5340458-5340477 | Msa1308950:intron | 35.0% |
| ! | AAGAGAAAGTGTGTTTGTGT+GGG | - | chr8_4:5340459-5340478 | Msa1308950:intron | 35.0% |
| ! | TTATTTTCTTGAATTGGGGG+GGG | - | chr8_4:5340610-5340629 | Msa1308950:intron | 35.0% |
| TTAATAGTGCTAGATGTGAG+AGG | - | chr8_4:5340783-5340802 | Msa1308950:intron | 35.0% | |
| GAATGTTGGGATTACAACAT+TGG | + | chr8_4:5341052-5341071 | None:intergenic | 35.0% | |
| TAATAGGGTGGTAGATAAGT+TGG | + | chr8_4:5341281-5341300 | None:intergenic | 35.0% | |
| TCATTTGCAAAGTAATAGGG+TGG | + | chr8_4:5341293-5341312 | None:intergenic | 35.0% | |
| CCCTATTACTTTGCAAATGA+TGG | - | chr8_4:5341293-5341312 | Msa1308950:intron | 35.0% | |
| ! | TGATGGTGCTGAATTCAATT+TGG | - | chr8_4:5341310-5341329 | Msa1308950:intron | 35.0% |
| GCTGAATTCAATTTGGTTGA+TGG | - | chr8_4:5341317-5341336 | Msa1308950:intron | 35.0% | |
| !! | GAATTCAATTTGGTTGATGG+AGG | - | chr8_4:5341320-5341339 | Msa1308950:intron | 35.0% |
| TTATCATATCTTGCAGACGT+TGG | - | chr8_4:5341475-5341494 | Msa1308950:intron | 35.0% | |
| TGAAGTGATAAAACAGCAGA+AGG | - | chr8_4:5341508-5341527 | Msa1308950:intron | 35.0% | |
| GAAGTGATAAAACAGCAGAA+GGG | - | chr8_4:5341509-5341528 | Msa1308950:intron | 35.0% | |
| AAGTGATAAAACAGCAGAAG+GGG | - | chr8_4:5341510-5341529 | Msa1308950:intron | 35.0% | |
| ! | TTGTTGTTGTCTATAGGATG+TGG | - | chr8_4:5341548-5341567 | Msa1308950:intron | 35.0% |
| TATAGGATGTGGAGCTAAAA+TGG | - | chr8_4:5341559-5341578 | Msa1308950:intron | 35.0% | |
| ! | TTCAATTCTCAGCAGCATTT+TGG | - | chr8_4:5341609-5341628 | Msa1308950:intron | 35.0% |
| ! | TCAATTCTCAGCAGCATTTT+GGG | - | chr8_4:5341610-5341629 | Msa1308950:intron | 35.0% |
| ! | ACTGGTAGTTATGATAATGC+TGG | - | chr8_4:5341650-5341669 | Msa1308950:intron | 35.0% |
| ! | GGTAGTTTTCAGAATATTGG+AGG | + | chr8_4:5341718-5341737 | None:intergenic | 35.0% |
| GACAGTCTAGATATCAAACT+CGG | + | chr8_4:5341880-5341899 | None:intergenic | 35.0% | |
| ATATAACTTGGATCCATCCA+TGG | - | chr8_4:5342312-5342331 | Msa1308950:intron | 35.0% | |
| TAATGCTACACAAGCAAACT+TGG | - | chr8_4:5342345-5342364 | Msa1308950:intron | 35.0% | |
| TTGGAAAATCTTGCAAAGGT+AGG | - | chr8_4:5342364-5342383 | Msa1308950:intron | 35.0% | |
| !! | CCTTAACTTGTAGTAGCAAA+AGG | + | chr8_4:5342586-5342605 | None:intergenic | 35.0% |
| ! | CCTTTTGCTACTACAAGTTA+AGG | - | chr8_4:5342583-5342602 | Msa1308950:intron | 35.0% |
| !! | ACCATTCTCAGTATTGATGG+TGG | - | chr8_4:5338212-5338231 | Msa1308950:three_prime_UTR | 40.0% |
| ACCACCATCAATACTGAGAA+TGG | + | chr8_4:5338216-5338235 | None:intergenic | 40.0% | |
| !! | ATTCTCAGTATTGATGGTGG+TGG | - | chr8_4:5338215-5338234 | Msa1308950:three_prime_UTR | 40.0% |
| !! | ATTGATGGTGGTGGTATTAG+AGG | - | chr8_4:5338224-5338243 | Msa1308950:three_prime_UTR | 40.0% |
| !! | TTGATGGTGGTGGTATTAGA+GGG | - | chr8_4:5338225-5338244 | Msa1308950:three_prime_UTR | 40.0% |
| ! | ATGCTTCTAAGAGACGTCAT+CGG | + | chr8_4:5338461-5338480 | None:intergenic | 40.0% |
| ! | CCTTTTGTGTGTTTGCATTG+AGG | + | chr8_4:5338585-5338604 | None:intergenic | 40.0% |
| CCTCAATGCAAACACACAAA+AGG | - | chr8_4:5338582-5338601 | Msa1308950:intron | 40.0% | |
| GGTGGCTGATAGTATAAAAC+TGG | + | chr8_4:5338662-5338681 | None:intergenic | 40.0% | |
| ACTAGAGAACGTTACAAAGG+TGG | + | chr8_4:5338680-5338699 | None:intergenic | 40.0% | |
| GAGACTAGAGAACGTTACAA+AGG | + | chr8_4:5338683-5338702 | None:intergenic | 40.0% | |
| CGTATTTACATAACACACGC+CGG | - | chr8_4:5338863-5338882 | Msa1308950:intron | 40.0% | |
| GTATTTACATAACACACGCC+GGG | - | chr8_4:5338864-5338883 | Msa1308950:intron | 40.0% | |
| TATTTACATAACACACGCCG+GGG | - | chr8_4:5338865-5338884 | Msa1308950:intron | 40.0% | |
| GTGTAAATAGAGGACGAGTA+GGG | + | chr8_4:5339177-5339196 | None:intergenic | 40.0% | |
| ACTTCTGCAGGTGTAAATAG+AGG | + | chr8_4:5339187-5339206 | None:intergenic | 40.0% | |
| ! | TCTCAGAGTGTTTATGTGTG+GGG | + | chr8_4:5339456-5339475 | None:intergenic | 40.0% |
| ! | CATCTCAGAGTGTTTATGTG+TGG | + | chr8_4:5339458-5339477 | None:intergenic | 40.0% |
| ! | CAAGGGTGTATGAGGATAAA+GGG | + | chr8_4:5340420-5340439 | None:intergenic | 40.0% |
| ! | ACAAGGGTGTATGAGGATAA+AGG | + | chr8_4:5340421-5340440 | None:intergenic | 40.0% |
| CATCTCATCTTCTCTGTACA+AGG | + | chr8_4:5340438-5340457 | None:intergenic | 40.0% | |
| ! | AGAGAAAGTGTGTTTGTGTG+GGG | - | chr8_4:5340460-5340479 | Msa1308950:intron | 40.0% |
| CCACATAAAAATCTGACACG+TGG | + | chr8_4:5340495-5340514 | None:intergenic | 40.0% | |
| ! | CCACGTGTCAGATTTTTATG+TGG | - | chr8_4:5340492-5340511 | Msa1308950:intron | 40.0% |
| ! | TATTTTCTTGAATTGGGGGG+GGG | - | chr8_4:5340611-5340630 | Msa1308950:intron | 40.0% |
| AAGAACTTGCCGTCATACTT+TGG | + | chr8_4:5340976-5340995 | None:intergenic | 40.0% | |
| GAAAACTTTGTTCATGCAGC+TGG | - | chr8_4:5341196-5341215 | Msa1308950:intron | 40.0% | |
| ! | GACAATTTTGCATCTTGGCT+GGG | + | chr8_4:5341230-5341249 | None:intergenic | 40.0% |
| ! | TGACAATTTTGCATCTTGGC+TGG | + | chr8_4:5341231-5341250 | None:intergenic | 40.0% |
| TGTGGAGCTAAAATGGTTAC+AGG | - | chr8_4:5341566-5341585 | Msa1308950:intron | 40.0% | |
| GTGGAGCTAAAATGGTTACA+GGG | - | chr8_4:5341567-5341586 | Msa1308950:intron | 40.0% | |
| TTTCAGAATATTGGAGGCCT+GGG | + | chr8_4:5341712-5341731 | None:intergenic | 40.0% | |
| ! | TTTTCAGAATATTGGAGGCC+TGG | + | chr8_4:5341713-5341732 | None:intergenic | 40.0% |
| ! | ATTCCCTGCACTCAATTTTG+TGG | - | chr8_4:5341786-5341805 | Msa1308950:CDS | 40.0% |
| TGACCACAAAATTGAGTGCA+GGG | + | chr8_4:5341792-5341811 | None:intergenic | 40.0% | |
| ATGACCACAAAATTGAGTGC+AGG | + | chr8_4:5341793-5341812 | None:intergenic | 40.0% | |
| ! | GCACTCAATTTTGTGGTCAT+TGG | - | chr8_4:5341793-5341812 | Msa1308950:CDS | 40.0% |
| TTATCCATGGAATCCATGGA+TGG | + | chr8_4:5342328-5342347 | None:intergenic | 40.0% | |
| AGCATTATCCATGGAATCCA+TGG | + | chr8_4:5342332-5342351 | None:intergenic | 40.0% | |
| TGCTTGTGTAGCATTATCCA+TGG | + | chr8_4:5342341-5342360 | None:intergenic | 40.0% | |
| !! | TCAAAACTGGTTTGCTCAGA+AGG | + | chr8_4:5342396-5342415 | None:intergenic | 40.0% |
| !!! | TGTTTTTTCCTCTGGCACAT+TGG | + | chr8_4:5342434-5342453 | None:intergenic | 40.0% |
| !!! | CCTTGGTTTGTTTTTTCCTC+TGG | + | chr8_4:5342442-5342461 | None:intergenic | 40.0% |
| CCAGAGGAAAAAACAAACCA+AGG | - | chr8_4:5342439-5342458 | Msa1308950:intron | 40.0% | |
| AAACCAAGGTACAAATGCTG+AGG | - | chr8_4:5342453-5342472 | Msa1308950:intron | 40.0% | |
| ! | TGTTTTCCACGTACTTCTCA+CGG | - | chr8_4:5342719-5342738 | Msa1308950:CDS | 40.0% |
| ! | TGGCTGTAGCATCTTTTTGT+TGG | - | chr8_4:5342765-5342784 | Msa1308950:CDS | 40.0% |
| ! | ACATTTCCATAGGTTGGAGG+TGG | + | chr8_4:5338188-5338207 | None:intergenic | 45.0% |
| CTCTTCAGACACACTTGCAA+AGG | - | chr8_4:5338488-5338507 | Msa1308950:CDS | 45.0% | |
| TTTGGTTGTGAGTTGCATGC+AGG | - | chr8_4:5339048-5339067 | Msa1308950:intron | 45.0% | |
| GGTGTAAATAGAGGACGAGT+AGG | + | chr8_4:5339178-5339197 | None:intergenic | 45.0% | |
| ATGCAAGTGCACAATGCTGT+TGG | - | chr8_4:5339308-5339327 | Msa1308950:CDS | 45.0% | |
| AATCGGATGCGAAATCGCAT+GGG | - | chr8_4:5339490-5339509 | Msa1308950:intron | 45.0% | |
| GAAATCGCATGGGAGATGAA+TGG | - | chr8_4:5339500-5339519 | Msa1308950:intron | 45.0% | |
| AATCGGATGCGAAATCGCAT+GGG | - | chr8_4:5339490-5339509 | Msa1308950:intron | 45.0% | |
| GAAATCGCATGGGAGATGAA+TGG | - | chr8_4:5339500-5339519 | Msa1308950:intron | 45.0% | |
| ! | TACGTCTTGTTCTTGGTCCT+TGG | + | chr8_4:5340121-5340140 | None:intergenic | 45.0% |
| AGGACCAAGAACAAGACGTA+TGG | - | chr8_4:5340121-5340140 | Msa1308950:intron | 45.0% | |
| ! | GTGACCATACGTCTTGTTCT+TGG | + | chr8_4:5340128-5340147 | None:intergenic | 45.0% |
| ! | TCTCTGTACAAGGGTGTATG+AGG | + | chr8_4:5340428-5340447 | None:intergenic | 45.0% |
| AAATCTGACACGTGGTTGTG+TGG | + | chr8_4:5340487-5340506 | None:intergenic | 45.0% | |
| ! | ATTTTCTTGAATTGGGGGGG+GGG | - | chr8_4:5340612-5340631 | Msa1308950:intron | 45.0% |
| TTGTTGGGATGCTACATACC+CGG | - | chr8_4:5340948-5340967 | Msa1308950:intron | 45.0% | |
| AACTTTGTTCATGCAGCTGG+AGG | - | chr8_4:5341199-5341218 | Msa1308950:intron | 45.0% | |
| !! | CAATTTGGTTGATGGAGGTG+TGG | - | chr8_4:5341325-5341344 | Msa1308950:intron | 45.0% |
| GATAAAACAGCAGAAGGGGA+AGG | - | chr8_4:5341514-5341533 | Msa1308950:intron | 45.0% | |
| TGTAGATACCAATGTGCCAG+AGG | - | chr8_4:5342423-5342442 | Msa1308950:intron | 45.0% | |
| TGCTGAGGCTCTTGAAAAGT+TGG | - | chr8_4:5342468-5342487 | Msa1308950:intron | 45.0% | |
| ! | AATCAACCGTGAGAAGTACG+TGG | + | chr8_4:5342728-5342747 | None:intergenic | 45.0% |
| !! | CAAATATAATATTAATTATT+TGG | + | chr8_4:5340274-5340293 | None:intergenic | 5.0% |
| !!! | TAAATTGTTTTTTTTTTTAT+AGG | + | chr8_4:5340714-5340733 | None:intergenic | 5.0% |
| !! | TTATAAATATTTCATTAAAT+CGG | - | chr8_4:5341763-5341782 | Msa1308950:CDS | 5.0% |
| ! | CCTGAAGAGCCTTTTCCAAG+TGG | + | chr8_4:5338274-5338293 | None:intergenic | 50.0% |
| CCACTTGGAAAAGGCTCTTC+AGG | - | chr8_4:5338271-5338290 | Msa1308950:three_prime_UTR | 50.0% | |
| CAAGATCGGGGTTCAAAACC+CGG | + | chr8_4:5338750-5338769 | None:intergenic | 50.0% | |
| CGCCGGGGAATTCTTGTATA+AGG | - | chr8_4:5338880-5338899 | Msa1308950:intron | 50.0% | |
| TGTGAGTTGCATGCAGGCAA+AGG | - | chr8_4:5339054-5339073 | Msa1308950:intron | 50.0% | |
| ! | GTGATAGCTGGGACTAGTAC+TGG | - | chr8_4:5339109-5339128 | Msa1308950:intron | 50.0% |
| ! | ATAGCTGGGACTAGTACTGG+AGG | - | chr8_4:5339112-5339131 | Msa1308950:intron | 50.0% |
| ! | TAGCTGGGACTAGTACTGGA+GGG | - | chr8_4:5339113-5339132 | Msa1308950:intron | 50.0% |
| GAGGACGAGTAGGGTCATTT+GGG | + | chr8_4:5339168-5339187 | None:intergenic | 50.0% | |
| AGAGGACGAGTAGGGTCATT+TGG | + | chr8_4:5339169-5339188 | None:intergenic | 50.0% | |
| GAATCGGATGCGAAATCGCA+TGG | - | chr8_4:5339489-5339508 | Msa1308950:intron | 50.0% | |
| GAATCGGATGCGAAATCGCA+TGG | - | chr8_4:5339489-5339508 | Msa1308950:intron | 50.0% | |
| ! | TTTTCTTGAATTGGGGGGGG+GGG | - | chr8_4:5340613-5340632 | Msa1308950:intron | 50.0% |
| !! | GCATTTTAGTGACGAGCCCA+GGG | + | chr8_4:5340648-5340667 | None:intergenic | 50.0% |
| !! | TGCATTTTAGTGACGAGCCC+AGG | + | chr8_4:5340649-5340668 | None:intergenic | 50.0% |
| TGTTGGGATGCTACATACCC+GGG | - | chr8_4:5340949-5340968 | Msa1308950:intron | 50.0% | |
| TACCCGGGTCCAAAGTATGA+CGG | - | chr8_4:5340964-5340983 | Msa1308950:intron | 50.0% | |
| TTGCCGTCATACTTTGGACC+CGG | + | chr8_4:5340970-5340989 | None:intergenic | 50.0% | |
| AGGTGTGGCTGCATGTAATC+CGG | - | chr8_4:5341340-5341359 | Msa1308950:intron | 50.0% | |
| ! | GCAGCATTTTGGGCAACATC+TGG | - | chr8_4:5341620-5341639 | Msa1308950:intron | 50.0% |
| !! | GCAACATCTGGTCTTGCAAC+TGG | - | chr8_4:5341632-5341651 | Msa1308950:intron | 50.0% |
| TACCTTGCCAAAGTCTTCCC+AGG | - | chr8_4:5341692-5341711 | Msa1308950:CDS | 50.0% | |
| GGATCCATCCATGGATTCCA+TGG | - | chr8_4:5342321-5342340 | Msa1308950:intron | 50.0% | |
| GAGCCTCAGCATTTGTACCT+TGG | + | chr8_4:5342459-5342478 | None:intergenic | 50.0% | |
| CAAAGAGAAGCAGCTTCGTC+TGG | - | chr8_4:5342504-5342523 | Msa1308950:intron | 50.0% | |
| GAGCTACCACCTCCAACCTA+TGG | - | chr8_4:5338179-5338198 | Msa1308950:three_prime_UTR | 55.0% | |
| CGAGTAGGGTCATTTGGGTG+AGG | + | chr8_4:5339163-5339182 | None:intergenic | 55.0% | |
| TTTCTTGAATTGGGGGGGGG+GGG | - | chr8_4:5340614-5340633 | Msa1308950:intron | 55.0% | |
| TGCCGTCATACTTTGGACCC+GGG | + | chr8_4:5340969-5340988 | None:intergenic | 55.0% | |
| TTGGAGGCCTGGGAAGACTT+TGG | + | chr8_4:5341702-5341721 | None:intergenic | 55.0% | |
| TTCTTGAATTGGGGGGGGGG+GGG | - | chr8_4:5340615-5340634 | Msa1308950:intron | 60.0% | |
| GGCCTGGGAAGACTTTGGCA+AGG | + | chr8_4:5341697-5341716 | None:intergenic | 60.0% | |
| TCTTGAATTGGGGGGGGGGG+GGG | - | chr8_4:5340616-5340635 | Msa1308950:intron | 65.0% | |
| CTTGAATTGGGGGGGGGGGG+GGG | - | chr8_4:5340617-5340636 | Msa1308950:intron | 70.0% | |
| TTGAATTGGGGGGGGGGGGG+GGG | - | chr8_4:5340618-5340637 | Msa1308950:intron | 70.0% | |
| TGAATTGGGGGGGGGGGGGG+GGG | - | chr8_4:5340619-5340638 | Msa1308950:intron | 75.0% | |
| ! | GAATTGGGGGGGGGGGGGGG+GGG | - | chr8_4:5340620-5340639 | Msa1308950:intron | 80.0% |
| ! | AATTGGGGGGGGGGGGGGGG+GGG | - | chr8_4:5340621-5340640 | Msa1308950:intron | 80.0% |
| ! | GGGGGGGGGGGGGGGACCCT+GGG | - | chr8_4:5340629-5340648 | Msa1308950:intron | 90.0% |
| ! | GGGGGGGGGGGGGGGGACCC+TGG | - | chr8_4:5340628-5340647 | Msa1308950:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 5338081 | 5342824 | 5338081 | ID=Msa1308950;Name=Msa1308950 |
| chr8_4 | mRNA | 5338081 | 5342824 | 5338081 | ID=Msa1308950-mRNA-1;Parent=Msa1308950;Name=Msa1308950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=32|1|1|1|1|1|6|221|409 |
| chr8_4 | exon | 5338081 | 5338595 | 5338081 | ID=Msa1308950-mRNA-1:exon:1716;Parent=Msa1308950-mRNA-1 |
| chr8_4 | exon | 5339157 | 5339414 | 5339157 | ID=Msa1308950-mRNA-1:exon:1715;Parent=Msa1308950-mRNA-1 |
| chr8_4 | exon | 5339544 | 5339690 | 5339544 | ID=Msa1308950-mRNA-1:exon:1714;Parent=Msa1308950-mRNA-1 |
| chr8_4 | exon | 5339792 | 5339957 | 5339792 | ID=Msa1308950-mRNA-1:exon:1713;Parent=Msa1308950-mRNA-1 |
| chr8_4 | exon | 5341651 | 5341835 | 5341651 | ID=Msa1308950-mRNA-1:exon:1712;Parent=Msa1308950-mRNA-1 |
| chr8_4 | exon | 5342613 | 5342824 | 5342613 | ID=Msa1308950-mRNA-1:exon:1711;Parent=Msa1308950-mRNA-1 |
| chr8_4 | five_prime_UTR | 5342793 | 5342824 | 5342793 | ID=Msa1308950-mRNA-1:five_prime_utr;Parent=Msa1308950-mRNA-1 |
| chr8_4 | CDS | 5342613 | 5342792 | 5342613 | ID=Msa1308950-mRNA-1:cds;Parent=Msa1308950-mRNA-1 |
| chr8_4 | CDS | 5341651 | 5341835 | 5341651 | ID=Msa1308950-mRNA-1:cds;Parent=Msa1308950-mRNA-1 |
| chr8_4 | CDS | 5339792 | 5339957 | 5339792 | ID=Msa1308950-mRNA-1:cds;Parent=Msa1308950-mRNA-1 |
| chr8_4 | CDS | 5339544 | 5339690 | 5339544 | ID=Msa1308950-mRNA-1:cds;Parent=Msa1308950-mRNA-1 |
| chr8_4 | CDS | 5339157 | 5339414 | 5339157 | ID=Msa1308950-mRNA-1:cds;Parent=Msa1308950-mRNA-1 |
| chr8_4 | CDS | 5338302 | 5338595 | 5338302 | ID=Msa1308950-mRNA-1:cds;Parent=Msa1308950-mRNA-1 |
| chr8_4 | three_prime_UTR | 5338081 | 5338301 | 5338081 | ID=Msa1308950-mRNA-1:three_prime_utr;Parent=Msa1308950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
