AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642910 MtrunA17_Chr4g0028871 99.043 209 2 0 1 209 1 209 7.85e-154 424
Msa0642910 MtrunA17_Chr2g0326841 88.517 209 24 0 1 209 1 209 2.15e-138 385
Msa0642910 MtrunA17_Chr1g0181131 87.255 204 26 0 1 204 1 204 6.49e-133 372
Msa0642910 MtrunA17_Chr7g0264181 87.940 199 24 0 6 204 7 205 1.05e-130 366
Msa0642910 MtrunA17_Chr3g0142491 72.222 216 53 1 1 209 3 218 3.61e-116 330
Msa0642910 MtrunA17_Chr1g0177391 75.377 199 49 0 6 204 2 200 6.47e-113 321
Msa0642910 MtrunA17_Chr1g0151201 68.095 210 61 2 1 208 1 206 1.23e-103 298
Msa0642910 MtrunA17_Chr1g0156401 64.286 112 19 1 40 130 1 112 4.14e-43 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642910 AT2G28305.1 90.816 196 18 0 9 204 4 199 8.26e-133 372
Msa0642910 AT2G37210.1 85.644 202 29 0 7 208 8 209 9.26e-131 367
Msa0642910 AT3G53450.1 82.857 210 35 1 1 209 1 210 1.89e-128 360
Msa0642910 AT2G37210.2 76.106 226 30 1 7 208 8 233 8.58e-125 352
Msa0642910 AT2G28305.3 92.778 180 13 0 9 188 4 183 4.86e-123 346
Msa0642910 AT5G06300.1 78.894 199 42 0 6 204 2 200 1.17e-117 333
Msa0642910 AT5G03270.1 79.793 193 39 0 3 195 9 201 6.28e-113 321
Msa0642910 AT5G03270.2 79.787 188 38 0 3 190 9 196 6.99e-109 310
Msa0642910 AT2G35990.1 69.849 199 60 0 6 204 2 200 9.68e-109 311
Msa0642910 AT4G35190.1 71.782 202 57 0 6 207 2 203 1.98e-108 310
Msa0642910 AT4G35190.2 73.545 189 50 0 6 194 2 190 5.00e-103 296
Msa0642910 AT5G11950.1 67.164 201 66 0 8 208 5 205 7.62e-103 296
Msa0642910 AT5G11950.2 67.164 201 66 0 8 208 5 205 7.62e-103 296
Msa0642910 AT5G11950.3 67.164 201 66 0 8 208 5 205 7.62e-103 296
Msa0642910 AT2G28305.2 92.647 136 10 0 9 144 4 139 8.75e-90 261
Msa0642910 AT2G35990.3 70.270 148 44 0 57 204 1 148 2.67e-78 232
Msa0642910 AT2G35990.2 70.270 148 44 0 57 204 1 148 2.67e-78 232
Msa0642910 AT5G11950.4 67.105 152 50 0 57 208 1 152 1.62e-74 222
Msa0642910 AT5G26140.2 55.102 147 44 1 84 208 6 152 3.08e-48 155
Msa0642910 AT5G26140.1 54.135 133 39 1 98 208 1 133 1.08e-41 138
Msa0642910 AT5G26140.3 58.824 102 42 0 107 208 17 118 1.26e-37 127

Find 80 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATTTGGTTTA+TGG 0.095929 4_3:+45217471 Msa0642910:CDS
TCCTATTCCAATACTCAATT+TGG 0.158067 4_3:+45215764 Msa0642910:five_prime_UTR
ACAATTATATGACGAGCTTT+AGG 0.212084 4_3:-45221621 None:intergenic
TTGTGGTGAAATTCTCAATT+TGG 0.262305 4_3:+45222576 Msa0642910:three_prime_UTR
GATGGAGGTCGACATGTTAT+TGG 0.299850 4_3:+45217540 Msa0642910:CDS
GGATGAGTAGTTTAAGAGTT+TGG 0.309487 4_3:+45222488 Msa0642910:three_prime_UTR
CAATTATATGACGAGCTTTA+GGG 0.317659 4_3:-45221620 None:intergenic
TCTAAGCAAAGTTGGGAAAC+TGG 0.328148 4_3:+45222193 Msa0642910:CDS
AAGTACGTACCTCCATCTTT+TGG 0.348298 4_3:-45221671 None:intergenic
TGAAAGAATCAAAGTTTAAG+AGG 0.352776 4_3:+45216093 Msa0642910:CDS
GTTTAAGAGTTTGGTACAAC+TGG 0.362783 4_3:+45222497 Msa0642910:three_prime_UTR
GGTGTCAAGAAATATTGATT+TGG 0.365193 4_3:+45217464 Msa0642910:intron
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 4_3:+45217494 Msa0642910:CDS
CAGCATTGGTTTGATGGGGT+TGG 0.384600 4_3:+45217500 Msa0642910:CDS
TTCCACATTTCTCTATATAT+AGG 0.385472 4_3:+45216003 Msa0642910:five_prime_UTR
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 4_3:+45217495 Msa0642910:CDS
GTTTCTCAAGCTGTTTATGA+TGG 0.421989 4_3:+45217522 Msa0642910:CDS
TCCCTCGTGTACAATTTGTA+AGG 0.429960 4_3:+45215945 Msa0642910:five_prime_UTR
CATCCTAAAATTACCTCTCT+TGG 0.431675 4_3:-45217676 None:intergenic
TCTCTTGGCATCAGTGTCCT+TGG 0.437369 4_3:-45217661 None:intergenic
TATATGCATGAAGGTGGCTA+TGG 0.441783 4_3:+45221358 Msa0642910:intron
AAAGATGCTGCTATTGAACT+TGG 0.452750 4_3:+45216161 Msa0642910:CDS
GTTTATGGAGGAGGCAGCAT+TGG 0.458836 4_3:+45217486 Msa0642910:CDS
GATGCAACTCTTTCATGTTG+TGG 0.462188 4_3:-45222172 None:intergenic
TGCAAACAAATTGTGAAGGT+TGG 0.463982 4_3:+45216031 Msa0642910:five_prime_UTR
GGTCTCACCAAATTGAGTAT+TGG 0.468635 4_3:-45215771 None:intergenic
ACCAAATTGAGTATTGGAAT+AGG 0.470971 4_3:-45215765 None:intergenic
TATTGCTCATGATGTAATCA+TGG 0.471235 4_3:+45215980 Msa0642910:five_prime_UTR
CTAAGCAAAGTTGGGAAACT+GGG 0.478869 4_3:+45222194 Msa0642910:CDS
GTAAAGATGATTGTGTGGTT+TGG 0.481171 4_3:-45215792 None:intergenic
GTGGGATTGTTGAATGTAGA+TGG 0.481596 4_3:+45221540 Msa0642910:CDS
AGCTTCTTGAGGTCATAACT+TGG 0.481664 4_3:+45221392 Msa0642910:CDS
GGAACCTTACTGGTTTATCA+TGG 0.482549 4_3:-45221429 None:intergenic
ATTGATTTGGTTTATGGAGG+AGG 0.486097 4_3:+45217477 Msa0642910:CDS
AATAAAAGCGTCAGAATGCT+TGG 0.487962 4_3:-45219090 None:intergenic
ATGGAGGTCGACATGTTATT+GGG 0.494358 4_3:+45217541 Msa0642910:CDS
AAGTTGGGAAACTGGGAAGC+TGG 0.495777 4_3:+45222201 Msa0642910:CDS
AGTTGCATCTAAGCAAAGTT+GGG 0.497061 4_3:+45222186 Msa0642910:CDS
GGAGAAGTGAAGGCAGTAGC+AGG 0.500561 4_3:+45219041 Msa0642910:CDS
AGTGGGTTTGTGCAGATCAC+TGG 0.500630 4_3:+45219008 Msa0642910:intron
GTCATAACTTGGGCTCAACT+TGG 0.508031 4_3:+45221403 Msa0642910:CDS
AATATTGATTTGGTTTATGG+AGG 0.510397 4_3:+45217474 Msa0642910:CDS
AAAAGAGCTTGTCCAAAAGA+TGG 0.518338 4_3:+45221659 Msa0642910:CDS
GAATGGGAACCAACCTGGTA+AGG 0.519861 4_3:-45219114 None:intergenic
GAGTTGCATCTAAGCAAAGT+TGG 0.520245 4_3:+45222185 Msa0642910:CDS
GAGGCAGCATTGGTTTGATG+GGG 0.537940 4_3:+45217496 Msa0642910:CDS
ATTGACAAAGCTGTGGAGGA+AGG 0.543403 4_3:+45221588 Msa0642910:CDS
AGAGACAGTGGGAGAAGTGA+AGG 0.543939 4_3:+45219031 Msa0642910:CDS
TCTCAAGCTGTTTATGATGG+AGG 0.551173 4_3:+45217525 Msa0642910:CDS
CTGAAATAAAGAGATGGAGG+AGG 0.552271 4_3:+45216061 Msa0642910:exon
TTATAGCTACTCTTGTTACC+AGG 0.556974 4_3:-45216140 None:intergenic
GCATCAAAGAAAAGCTGAGA+TGG 0.557994 4_3:+45219067 Msa0642910:CDS
GACACTTGAGGAGCTTCTTG+AGG 0.558323 4_3:+45221381 Msa0642910:CDS
TATTGAACTTGGAAATGAGT+TGG 0.558813 4_3:+45216172 Msa0642910:CDS
GATCTGAAATAAAGAGATGG+AGG 0.562174 4_3:+45216058 Msa0642910:exon
GTGAAATTCTCAATTTGGAT+GGG 0.564398 4_3:+45222581 Msa0642910:three_prime_UTR
CCACACAATCATCTTTACAT+AGG 0.565050 4_3:+45215797 Msa0642910:five_prime_UTR
GGTGAAATTCTCAATTTGGA+TGG 0.565075 4_3:+45222580 Msa0642910:three_prime_UTR
ATCTTTCATTGACAAAGCTG+TGG 0.565707 4_3:+45221581 Msa0642910:CDS
CTCCTTACAAATTGTACACG+AGG 0.568592 4_3:-45215947 None:intergenic
CATTGTGACATCTCAAGTTG+TGG 0.575431 4_3:+45222235 Msa0642910:three_prime_UTR
GCTTCTTGAGGTCATAACTT+GGG 0.575878 4_3:+45221393 Msa0642910:CDS
ATTGATCTGAAATAAAGAGA+TGG 0.576817 4_3:+45216055 Msa0642910:exon
ATATGCATGAAGGTGGCTAT+GGG 0.577892 4_3:+45221359 Msa0642910:intron
TTTCATTGACAAAGCTGTGG+AGG 0.587801 4_3:+45221584 Msa0642910:CDS
ATTATTGTAGGGTTATTCCA+AGG 0.594554 4_3:+45217644 Msa0642910:intron
TAAGAAAGAATTATAGCTTG+AGG 0.597491 4_3:-45222309 None:intergenic
TCATCTTTACATAGGACCAC+GGG 0.606037 4_3:+45215805 Msa0642910:five_prime_UTR
CAGATCACTGGAGAGACAGT+GGG 0.608222 4_3:+45219020 Msa0642910:intron
ATCATCTTTACATAGGACCA+CGG 0.620297 4_3:+45215804 Msa0642910:five_prime_UTR
CACCTATATATAGAGAAATG+TGG 0.620764 4_3:-45216005 None:intergenic
ACTTGAGATGTCACAATGTG+AGG 0.626989 4_3:-45222230 None:intergenic
GCAGATCACTGGAGAGACAG+TGG 0.632705 4_3:+45219019 Msa0642910:intron
AAAGTCTTTGTCATCAATTG+TGG 0.643936 4_3:+45222559 Msa0642910:three_prime_UTR
AAGGACACTGATGCCAAGAG+AGG 0.647568 4_3:+45217663 Msa0642910:CDS
AGGTGGCTATGGGACACTTG+AGG 0.653214 4_3:+45221369 Msa0642910:intron
GTTGTGCAAACAAATTGTGA+AGG 0.665875 4_3:+45216027 Msa0642910:five_prime_UTR
CCTATGTAAAGATGATTGTG+TGG 0.666612 4_3:-45215797 None:intergenic
AGAGCTTGTCCAAAAGATGG+AGG 0.667572 4_3:+45221662 Msa0642910:CDS
TCCTTACAAATTGTACACGA+GGG 0.683887 4_3:-45215946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATAATATGTAAAAA+AGG - chr4_3:45215834-45215853 None:intergenic 10.0%
!!! TTTAACACTTTTTTTTTTTT+TGG - chr4_3:45216852-45216871 None:intergenic 10.0%
!!! TTGTTTTATAACTATATTAT+TGG + chr4_3:45217133-45217152 Msa0642910:intron 10.0%
!! ATAAAAAAAAAAAAAAAGAG+TGG - chr4_3:45217873-45217892 None:intergenic 10.0%
!!! TTGTTTTTTTGTTTTTAATT+CGG + chr4_3:45218109-45218128 Msa0642910:intron 10.0%
!! AACAATCTATATATAATAAT+TGG + chr4_3:45218447-45218466 Msa0642910:intron 10.0%
!! TATTAATAATAAAAACAATG+AGG - chr4_3:45218525-45218544 None:intergenic 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG + chr4_3:45219365-45219384 Msa0642910:intron 10.0%
!!! ATATTTAGACATATTATTTT+TGG + chr4_3:45220033-45220052 Msa0642910:intron 10.0%
!!! TTTTTTTTTTGTTATAAAAG+AGG + chr4_3:45220119-45220138 Msa0642910:intron 10.0%
!!! TTTTTTTTTGTTATAAAAGA+GGG + chr4_3:45220120-45220139 Msa0642910:intron 10.0%
!!! AATAAAAATTACTACAATTT+TGG + chr4_3:45220337-45220356 Msa0642910:intron 10.0%
!! CCAAAAAATAATTATTTAAA+TGG - chr4_3:45220923-45220942 None:intergenic 10.0%
!!! CCATTTAAATAATTATTTTT+TGG + chr4_3:45220920-45220939 Msa0642910:intron 10.0%
!!! GTTTTTTAAAATAAAAACTA+AGG - chr4_3:45221207-45221226 None:intergenic 10.0%
!! TAAAAAACATAAAAAAGTTA+AGG + chr4_3:45221219-45221238 Msa0642910:intron 10.0%
!!! GTTTAACTTTTTAATAAAAA+TGG - chr4_3:45221468-45221487 None:intergenic 10.0%
!! AAAATTCAATTTATAGATTA+TGG - chr4_3:45221507-45221526 None:intergenic 10.0%
!!! ATAATCTATAAATTGAATTT+TGG + chr4_3:45221506-45221525 Msa0642910:intron 10.0%
!!! TTTTTACAAGCAATTTTTTA+GGG - chr4_3:45217382-45217401 None:intergenic 15.0%
!!! TGTTAATTAAATCCTTTTTT+GGG + chr4_3:45217419-45217438 Msa0642910:intron 15.0%
!!! TTACAATAACTGTATTATTT+TGG - chr4_3:45218237-45218256 None:intergenic 15.0%
!!! TTTTTGAATTTCTTATTCTT+TGG + chr4_3:45218364-45218383 Msa0642910:intron 15.0%
!!! TTGTAATTTGTGTAATAATT+TGG + chr4_3:45218969-45218988 Msa0642910:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr4_3:45219342-45219361 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr4_3:45219341-45219360 Msa0642910:intron 15.0%
!!! ATCTTTTATTTTTAAATTGC+TGG + chr4_3:45219734-45219753 Msa0642910:intron 15.0%
!!! AAAGAATTTTGATTTACATT+GGG - chr4_3:45220152-45220171 None:intergenic 15.0%
!! ATTCAAACTAATAAAACAAA+CGG - chr4_3:45220393-45220412 None:intergenic 15.0%
!!! AAATTTTTGCTTATAATAAC+CGG - chr4_3:45220474-45220493 None:intergenic 15.0%
!!! AAAATATTTTAACGCATTTT+TGG - chr4_3:45220731-45220750 None:intergenic 15.0%
!!! AAAAATGCGTTAAAATATTT+TGG + chr4_3:45220730-45220749 Msa0642910:intron 15.0%
!! AACTTAAAAATACAAATCAA+CGG + chr4_3:45221047-45221066 Msa0642910:intron 15.0%
!!! TATAAATTGAATTTTGGTTT+TGG + chr4_3:45221512-45221531 Msa0642910:intron 15.0%
!!! ATGTATCTTTTTCTTTTTAA+AGG + chr4_3:45222612-45222631 Msa0642910:three_prime_UTR 15.0%
!!! GTTTGTTTTCTACTTTAATA+TGG - chr4_3:45215889-45215908 None:intergenic 20.0%
!!! TAACATTTAATGTTTTGCTT+TGG + chr4_3:45216419-45216438 Msa0642910:intron 20.0%
!! CTAATTTGACTAAGTATAAA+AGG - chr4_3:45216701-45216720 None:intergenic 20.0%
!!! ATGGTTTGTATATATATAGA+GGG - chr4_3:45216772-45216791 None:intergenic 20.0%
!!! AATGGTTTGTATATATATAG+AGG - chr4_3:45216773-45216792 None:intergenic 20.0%
!! CTCTCTATATATATATTTAG+AGG + chr4_3:45217079-45217098 Msa0642910:intron 20.0%
!! ATGAAAAATATGTATTTGAG+AGG - chr4_3:45217235-45217254 None:intergenic 20.0%
!!! TCATTTTGTAGACATTAAAT+TGG - chr4_3:45217314-45217333 None:intergenic 20.0%
!!! CTTTTTACAAGCAATTTTTT+AGG - chr4_3:45217383-45217402 None:intergenic 20.0%
!!! GTGTTAATTAAATCCTTTTT+TGG + chr4_3:45217418-45217437 Msa0642910:intron 20.0%
!!! ATTGTTTTGATGTCTTAAAA+AGG + chr4_3:45217443-45217462 Msa0642910:intron 20.0%
!!! AGAAATATTGATTTGGTTTA+TGG + chr4_3:45217471-45217490 Msa0642910:CDS 20.0%
!! TATTGTCATTGTATTATTGT+AGG + chr4_3:45217632-45217651 Msa0642910:intron 20.0%
!! ATTGTCATTGTATTATTGTA+GGG + chr4_3:45217633-45217652 Msa0642910:intron 20.0%
!! AAAAAGATGATACATAGAAT+TGG - chr4_3:45217806-45217825 None:intergenic 20.0%
!! TATTATTGTGTGATTCATTT+AGG + chr4_3:45217890-45217909 Msa0642910:intron 20.0%
!!! TTTATTTTGATGTCACATTT+TGG + chr4_3:45217952-45217971 Msa0642910:intron 20.0%
!! TTGACAAAAGAATCTTAAAA+AGG - chr4_3:45218071-45218090 None:intergenic 20.0%
!! TTTCTCAATGATAAGAAAAT+GGG - chr4_3:45218187-45218206 None:intergenic 20.0%
!! ACAGTTATTGTAATTGTAAT+CGG + chr4_3:45218244-45218263 Msa0642910:intron 20.0%
!!! ACATCAAGTATTTAAAACAT+GGG + chr4_3:45218622-45218641 Msa0642910:intron 20.0%
!! TAACATTTCACTTCAAAAAA+AGG + chr4_3:45218943-45218962 Msa0642910:intron 20.0%
!! GTCAAGTCAATAATATATAT+TGG - chr4_3:45219185-45219204 None:intergenic 20.0%
!! TGTGAATTAGTAGAAAAATA+TGG - chr4_3:45219217-45219236 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr4_3:45219308-45219327 Msa0642910:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr4_3:45219351-45219370 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr4_3:45219428-45219447 Msa0642910:intron 20.0%
!!! TTTTTGGTATGTTTTTACTT+CGG + chr4_3:45220049-45220068 Msa0642910:intron 20.0%
!!! GAAAGAATTTTGATTTACAT+TGG - chr4_3:45220153-45220172 None:intergenic 20.0%
!!! TTTTGAATAATGCATTGTTA+GGG - chr4_3:45220864-45220883 None:intergenic 20.0%
!!! TTTTTGAATAATGCATTGTT+AGG - chr4_3:45220865-45220884 None:intergenic 20.0%
!! CATTATTCAAAAATTGATGT+CGG + chr4_3:45220872-45220891 Msa0642910:intron 20.0%
!!! TAAGTTTTTAGTTGTATATG+TGG - chr4_3:45221033-45221052 None:intergenic 20.0%
!! ACTTAAAAATACAAATCAAC+GGG + chr4_3:45221048-45221067 Msa0642910:intron 20.0%
!!! AAATTATTTCAAGTTCTCAA+CGG + chr4_3:45221160-45221179 Msa0642910:intron 20.0%
!! TAAAAATCGTAGCATTAAAA+TGG - chr4_3:45221769-45221788 None:intergenic 20.0%
!!! TTTTAGCTTATGAATATTCA+TGG + chr4_3:45221784-45221803 Msa0642910:intron 20.0%
!! TTTGATATATCTCTCAAATA+TGG + chr4_3:45221869-45221888 Msa0642910:intron 20.0%
!!! ATGTGAATTATTGTTTTTTC+AGG + chr4_3:45222414-45222433 Msa0642910:three_prime_UTR 20.0%
!!! TCTAACATCTATTCATTTTT+TGG - chr4_3:45222457-45222476 None:intergenic 20.0%
!! AAAAAATGAATAGATGTTAG+AGG + chr4_3:45222456-45222475 Msa0642910:three_prime_UTR 20.0%
! TTCCACATTTCTCTATATAT+AGG + chr4_3:45216003-45216022 Msa0642910:five_prime_UTR 25.0%
!! ATTGATCTGAAATAAAGAGA+TGG + chr4_3:45216055-45216074 Msa0642910:exon 25.0%
! TGAAAGAATCAAAGTTTAAG+AGG + chr4_3:45216093-45216112 Msa0642910:CDS 25.0%
!! TTTTTCCTTAGAATTTAGAC+CGG + chr4_3:45216238-45216257 Msa0642910:intron 25.0%
!! TATTACAAGCAGATTTTGTA+GGG - chr4_3:45216275-45216294 None:intergenic 25.0%
! TGTTAAATTTCCAAGAAGAA+TGG - chr4_3:45216404-45216423 None:intergenic 25.0%
!!! GTTTTGATTAAACCTTTGTT+TGG + chr4_3:45216500-45216519 Msa0642910:intron 25.0%
!! AATTTTCATTACGAACCTTT+TGG + chr4_3:45216608-45216627 Msa0642910:intron 25.0%
!!! CACATACTTTCTTTGTTTTT+GGG - chr4_3:45216942-45216961 None:intergenic 25.0%
!! CAAAAACAAAGAAAGTATGT+GGG + chr4_3:45216941-45216960 Msa0642910:intron 25.0%
! TATATATATAGAGAGAGAGA+GGG - chr4_3:45217074-45217093 None:intergenic 25.0%
! ATATATATATAGAGAGAGAG+AGG - chr4_3:45217075-45217094 None:intergenic 25.0%
!! TGTACATGAGATTTTACTTA+AGG + chr4_3:45217265-45217284 Msa0642910:intron 25.0%
!! GTACATGAGATTTTACTTAA+GGG + chr4_3:45217266-45217285 Msa0642910:intron 25.0%
! ATCAAAACAATACCCAAAAA+AGG - chr4_3:45217434-45217453 None:intergenic 25.0%
!!! AATATTGATTTGGTTTATGG+AGG + chr4_3:45217474-45217493 Msa0642910:CDS 25.0%
!!! TTTGATAATTTTCTCTCCTA+TGG - chr4_3:45217734-45217753 None:intergenic 25.0%
! TCGGTATTGTTAGTATAATA+TGG + chr4_3:45218128-45218147 Msa0642910:intron 25.0%
! CGGTATTGTTAGTATAATAT+GGG + chr4_3:45218129-45218148 Msa0642910:intron 25.0%
! GGTATTGTTAGTATAATATG+GGG + chr4_3:45218130-45218149 Msa0642910:intron 25.0%
! CTTTCTCAATGATAAGAAAA+TGG - chr4_3:45218188-45218207 None:intergenic 25.0%
!! TATAATAATTGGTTCAACCA+CGG + chr4_3:45218458-45218477 Msa0642910:intron 25.0%
! AAACAAATTGAATCATGACT+AGG + chr4_3:45218578-45218597 Msa0642910:intron 25.0%
!!! TGTTTTAAATACTTGATGTG+AGG - chr4_3:45218621-45218640 None:intergenic 25.0%
!! CACATCAAGTATTTAAAACA+TGG + chr4_3:45218621-45218640 Msa0642910:intron 25.0%
!!! ATAACTTGGCATTTTTTCAA+AGG - chr4_3:45218674-45218693 None:intergenic 25.0%
! AGCAAAAATAGTAATGATGA+GGG - chr4_3:45218726-45218745 None:intergenic 25.0%
! AAGCAAAAATAGTAATGATG+AGG - chr4_3:45218727-45218746 None:intergenic 25.0%
!! AATACAAAGTTGCTCTTTTT+GGG - chr4_3:45218822-45218841 None:intergenic 25.0%
! GCAATTAGATCATATATTGA+GGG - chr4_3:45219163-45219182 None:intergenic 25.0%
! CAAAGATAAAACATATGCAT+TGG + chr4_3:45219612-45219631 Msa0642910:intron 25.0%
! ATTTACGTTAGAAAGAACTT+AGG - chr4_3:45219843-45219862 None:intergenic 25.0%
! ATTTACGTTAGAAAGAACTT+AGG - chr4_3:45219843-45219862 None:intergenic 25.0%
!! TTTTGGCAAAAAATTACCAA+AGG + chr4_3:45220354-45220373 Msa0642910:intron 25.0%
! AAAAAATTACCAAAGGTTTG+AGG + chr4_3:45220361-45220380 Msa0642910:intron 25.0%
!!! TTTTTAGTTGTATATGTGGA+TGG - chr4_3:45221029-45221048 None:intergenic 25.0%
! AATAAAAATGGCAAGATTGA+GGG - chr4_3:45221456-45221475 None:intergenic 25.0%
! TAATAAAAATGGCAAGATTG+AGG - chr4_3:45221457-45221476 None:intergenic 25.0%
!!! TTGAATTTTGGTTTTGGAAA+AGG + chr4_3:45221518-45221537 Msa0642910:intron 25.0%
! TTTGGCATAAACTATACATA+GGG - chr4_3:45222038-45222057 None:intergenic 25.0%
!! TTTTGGCATAAACTATACAT+AGG - chr4_3:45222039-45222058 None:intergenic 25.0%
!! ACGATGAATTATCACAATTT+TGG - chr4_3:45222056-45222075 None:intergenic 25.0%
!!! AGATTTGATTTTACCCTTAT+AGG + chr4_3:45222141-45222160 Msa0642910:intron 25.0%
! TAAGAAAGAATTATAGCTTG+AGG - chr4_3:45222312-45222331 None:intergenic 25.0%
!!! GCATTTTTTTTTTGTTAGTG+TGG + chr4_3:45222363-45222382 Msa0642910:intron 25.0%
TCCTATTCCAATACTCAATT+TGG + chr4_3:45215764-45215783 Msa0642910:five_prime_UTR 30.0%
!! ACCAAATTGAGTATTGGAAT+AGG - chr4_3:45215768-45215787 None:intergenic 30.0%
! TCTTTCTCTCTTATCTTTTC+TGG + chr4_3:45215850-45215869 Msa0642910:five_prime_UTR 30.0%
!! TTATCTTTTCTGGTACAATC+AGG + chr4_3:45215860-45215879 Msa0642910:five_prime_UTR 30.0%
!! TATCTTTTCTGGTACAATCA+GGG + chr4_3:45215861-45215880 Msa0642910:five_prime_UTR 30.0%
TATTGCTCATGATGTAATCA+TGG + chr4_3:45215980-45215999 Msa0642910:five_prime_UTR 30.0%
CACCTATATATAGAGAAATG+TGG - chr4_3:45216008-45216027 None:intergenic 30.0%
!!! AAGAGGATTTGTGTTTTTTG+TGG + chr4_3:45216110-45216129 Msa0642910:CDS 30.0%
TATTGAACTTGGAAATGAGT+TGG + chr4_3:45216172-45216191 Msa0642910:CDS 30.0%
! CTATTACAAGCAGATTTTGT+AGG - chr4_3:45216276-45216295 None:intergenic 30.0%
CAAAATCTGCTTGTAATAGA+AGG + chr4_3:45216277-45216296 Msa0642910:intron 30.0%
CATCTTATGTAAGACTCTTT+AGG + chr4_3:45216342-45216361 Msa0642910:intron 30.0%
AAATTTCCAAGAAGAATGGA+GGG - chr4_3:45216400-45216419 None:intergenic 30.0%
TAAATTTCCAAGAAGAATGG+AGG - chr4_3:45216401-45216420 None:intergenic 30.0%
!!! AATGTTTTGCTTTGGTGTTT+TGG + chr4_3:45216427-45216446 Msa0642910:intron 30.0%
TGAACTACTTAATCTCATCA+AGG + chr4_3:45216572-45216591 Msa0642910:intron 30.0%
!!! CAGTTTCTCAACTTTTTTCA+TGG + chr4_3:45216745-45216764 Msa0642910:intron 30.0%
GTGAAGTTGTGAAAGATAAA+TGG - chr4_3:45216791-45216810 None:intergenic 30.0%
ACTTCACATAGATAAAGTTG+TGG + chr4_3:45216804-45216823 Msa0642910:intron 30.0%
!!! CCACATACTTTCTTTGTTTT+TGG - chr4_3:45216943-45216962 None:intergenic 30.0%
! CCAAAAACAAAGAAAGTATG+TGG + chr4_3:45216940-45216959 Msa0642910:intron 30.0%
! AAAGTATCTATCAGCTTTAC+CGG + chr4_3:45217159-45217178 Msa0642910:intron 30.0%
! GGTGTCAAGAAATATTGATT+TGG + chr4_3:45217464-45217483 Msa0642910:intron 30.0%
CCAACATAACACAAATCATA+AGG - chr4_3:45217588-45217607 None:intergenic 30.0%
! CCTTATGATTTGTGTTATGT+TGG + chr4_3:45217585-45217604 Msa0642910:intron 30.0%
ATTATTGTAGGGTTATTCCA+AGG + chr4_3:45217644-45217663 Msa0642910:intron 30.0%
!!! AGAGGTAATTTTAGGATGTT+TGG + chr4_3:45217681-45217700 Msa0642910:intron 30.0%
! TTTAGGATGTTTGGATTTGA+AGG + chr4_3:45217690-45217709 Msa0642910:intron 30.0%
AGCAAAATAAGCACATATTG+TGG - chr4_3:45217774-45217793 None:intergenic 30.0%
GTATTTGGATAACAAAAGCA+AGG - chr4_3:45217841-45217860 None:intergenic 30.0%
GAGTGGAAAATCAATGTATT+TGG - chr4_3:45217856-45217875 None:intergenic 30.0%
CATTGAGAAAGTAACATAGT+TGG + chr4_3:45218197-45218216 Msa0642910:intron 30.0%
!!! TATTATTTTGGCAGTCAATC+TGG - chr4_3:45218225-45218244 None:intergenic 30.0%
TGTAATTCTATCCAGTTATG+AGG - chr4_3:45218496-45218515 None:intergenic 30.0%
! CAATACAAAGTTGCTCTTTT+TGG - chr4_3:45218823-45218842 None:intergenic 30.0%
CAAAAAGAGCAACTTTGTAT+TGG + chr4_3:45218821-45218840 Msa0642910:intron 30.0%
TTAGATCATATATTGAGGGA+CGG - chr4_3:45219159-45219178 None:intergenic 30.0%
GGCAATTAGATCATATATTG+AGG - chr4_3:45219164-45219183 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr4_3:45219259-45219278 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr4_3:45219260-45219279 Msa0642910:intron 30.0%
GTTATTATTGCATTGGAAAC+TGG + chr4_3:45219435-45219454 Msa0642910:intron 30.0%
AGTATCATGTAAGATGTTGT+TGG + chr4_3:45219520-45219539 Msa0642910:intron 30.0%
AAAATAACCTCGATCCAAAT+GGG - chr4_3:45219772-45219791 None:intergenic 30.0%
TAAAATAACCTCGATCCAAA+TGG - chr4_3:45219773-45219792 None:intergenic 30.0%
!!! TTTTGATTTACATTGGGCTT+TGG - chr4_3:45220146-45220165 None:intergenic 30.0%
AATGACATCTAAGTTCACAA+AGG + chr4_3:45220193-45220212 Msa0642910:intron 30.0%
! TTTTGCTTATAATAACCGGA+GGG - chr4_3:45220470-45220489 None:intergenic 30.0%
! TTTTTGCTTATAATAACCGG+AGG - chr4_3:45220471-45220490 None:intergenic 30.0%
TTGTTTATAATAGTGACCAG+AGG + chr4_3:45220584-45220603 Msa0642910:intron 30.0%
TGTTTATAATAGTGACCAGA+GGG + chr4_3:45220585-45220604 Msa0642910:intron 30.0%
!!! CATTTTTGGTGATTTTCATG+GGG - chr4_3:45220717-45220736 None:intergenic 30.0%
!!! GCATTTTTGGTGATTTTCAT+GGG - chr4_3:45220718-45220737 None:intergenic 30.0%
TCTTCCACATCATAAATACT+GGG - chr4_3:45220825-45220844 None:intergenic 30.0%
ATCTTCCACATCATAAATAC+TGG - chr4_3:45220826-45220845 None:intergenic 30.0%
AAAAATACAAATCAACGGGT+TGG + chr4_3:45221052-45221071 Msa0642910:intron 30.0%
ATCAAGATTTGAATCCACTT+AGG + chr4_3:45221099-45221118 Msa0642910:intron 30.0%
ACATAGATATTTCTCCTAAG+TGG - chr4_3:45221116-45221135 None:intergenic 30.0%
!! ACATATATTCTGAAGCTGTA+AGG + chr4_3:45221293-45221312 Msa0642910:intron 30.0%
TATGTCCATTATATGCATGA+AGG + chr4_3:45221349-45221368 Msa0642910:intron 30.0%
!!! AATTTTGGTTTTGGAAAAGG+TGG + chr4_3:45221521-45221540 Msa0642910:intron 30.0%
!!! ATTTTGGTTTTGGAAAAGGT+GGG + chr4_3:45221522-45221541 Msa0642910:intron 30.0%
CAATTATATGACGAGCTTTA+GGG - chr4_3:45221623-45221642 None:intergenic 30.0%
ACAATTATATGACGAGCTTT+AGG - chr4_3:45221624-45221643 None:intergenic 30.0%
CAAATCATTATTAACCCGTT+TGG - chr4_3:45221853-45221872 None:intergenic 30.0%
TTGCCAAAATCAACAAATGA+AGG - chr4_3:45221974-45221993 None:intergenic 30.0%
!!! TTTTTTGTTAGTGTGGACTA+TGG + chr4_3:45222370-45222389 Msa0642910:three_prime_UTR 30.0%
!! AGATGTTAGAGGTTTTGTAT+AGG + chr4_3:45222467-45222486 Msa0642910:three_prime_UTR 30.0%
AAAGTCTTTGTCATCAATTG+TGG + chr4_3:45222559-45222578 Msa0642910:three_prime_UTR 30.0%
TTGTGGTGAAATTCTCAATT+TGG + chr4_3:45222576-45222595 Msa0642910:three_prime_UTR 30.0%
GTGAAATTCTCAATTTGGAT+GGG + chr4_3:45222581-45222600 Msa0642910:three_prime_UTR 30.0%
GTAAAGATGATTGTGTGGTT+TGG - chr4_3:45215795-45215814 None:intergenic 35.0%
CCTATGTAAAGATGATTGTG+TGG - chr4_3:45215800-45215819 None:intergenic 35.0%
CCACACAATCATCTTTACAT+AGG + chr4_3:45215797-45215816 Msa0642910:five_prime_UTR 35.0%
ATCATCTTTACATAGGACCA+CGG + chr4_3:45215804-45215823 Msa0642910:five_prime_UTR 35.0%
TATGTAAAAAAGGAAACCCG+TGG - chr4_3:45215824-45215843 None:intergenic 35.0%
!! ATCTTTTCTGGTACAATCAG+GGG + chr4_3:45215862-45215881 Msa0642910:five_prime_UTR 35.0%
TCCTTACAAATTGTACACGA+GGG - chr4_3:45215949-45215968 None:intergenic 35.0%
GTTGTGCAAACAAATTGTGA+AGG + chr4_3:45216027-45216046 Msa0642910:five_prime_UTR 35.0%
TGCAAACAAATTGTGAAGGT+TGG + chr4_3:45216031-45216050 Msa0642910:five_prime_UTR 35.0%
! GATCTGAAATAAAGAGATGG+AGG + chr4_3:45216058-45216077 Msa0642910:exon 35.0%
TTATAGCTACTCTTGTTACC+AGG - chr4_3:45216143-45216162 None:intergenic 35.0%
AAAGATGCTGCTATTGAACT+TGG + chr4_3:45216161-45216180 Msa0642910:CDS 35.0%
TTTGTCCGGTCTAAATTCTA+AGG - chr4_3:45216246-45216265 None:intergenic 35.0%
TGGTATCAAGAAACTCATCA+AGG - chr4_3:45216530-45216549 None:intergenic 35.0%
AGTAGTTCAATTGCGAATGA+AGG - chr4_3:45216561-45216580 None:intergenic 35.0%
! TTTCATTACGAACCTTTTGG+TGG + chr4_3:45216611-45216630 Msa0642910:intron 35.0%
!! ATTGATTTGGTTTATGGAGG+AGG + chr4_3:45217477-45217496 Msa0642910:CDS 35.0%
GTTTCTCAAGCTGTTTATGA+TGG + chr4_3:45217522-45217541 Msa0642910:CDS 35.0%
! ATGCCAAGAGAGGTAATTTT+AGG + chr4_3:45217673-45217692 Msa0642910:intron 35.0%
CATCCTAAAATTACCTCTCT+TGG - chr4_3:45217679-45217698 None:intergenic 35.0%
ATGACCAAACAAGTTACCAT+AGG + chr4_3:45217715-45217734 Msa0642910:intron 35.0%
TTTGGATAACAAAAGCAAGG+TGG - chr4_3:45217838-45217857 None:intergenic 35.0%
!! TGATTCATTTAGGTTGCAAG+TGG + chr4_3:45217900-45217919 Msa0642910:intron 35.0%
!! GATTCATTTAGGTTGCAAGT+GGG + chr4_3:45217901-45217920 Msa0642910:intron 35.0%
AACTTACCTATCATTACACC+TGG + chr4_3:45217987-45218006 Msa0642910:intron 35.0%
TAGTCTCCTTCGAAAAACAT+TGG - chr4_3:45218392-45218411 None:intergenic 35.0%
CAAGTGGAAATCGTATAACT+TGG - chr4_3:45218688-45218707 None:intergenic 35.0%
TTGCACGAATCATTGACAAA+AGG + chr4_3:45218757-45218776 Msa0642910:intron 35.0%
TGCACGAATCATTGACAAAA+GGG + chr4_3:45218758-45218777 Msa0642910:intron 35.0%
TGTCCTTATGACACATGTTA+AGG + chr4_3:45218794-45218813 Msa0642910:intron 35.0%
GTTCCTTAACATGTGTCATA+AGG - chr4_3:45218800-45218819 None:intergenic 35.0%
!! ATGTTAACTTGTGCTCTCAA+AGG - chr4_3:45218929-45218948 None:intergenic 35.0%
GATTATTCTTGTGTGTGAGT+GGG + chr4_3:45218991-45219010 Msa0642910:intron 35.0%
!! AATAAAAGCGTCAGAATGCT+TGG - chr4_3:45219093-45219112 None:intergenic 35.0%
GAGTAGAATATTGGTGGAAT+GGG - chr4_3:45219133-45219152 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr4_3:45219390-45219409 Msa0642910:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4_3:45219493-45219512 Msa0642910:intron 35.0%
TCAACTAGGTCATCTATTGA+CGG + chr4_3:45219649-45219668 Msa0642910:intron 35.0%
TTCGGAATTCTGATGCAATT+TGG + chr4_3:45220067-45220086 Msa0642910:intron 35.0%
TCGGAATTCTGATGCAATTT+GGG + chr4_3:45220068-45220087 Msa0642910:intron 35.0%
TTTCATGGGGTAAATCCAAT+CGG - chr4_3:45220704-45220723 None:intergenic 35.0%
!!! CGCATTTTTGGTGATTTTCA+TGG - chr4_3:45220719-45220738 None:intergenic 35.0%
AGTTTCTTGCACGTCTAATT+TGG - chr4_3:45220766-45220785 None:intergenic 35.0%
ACAACCCAGTATTTATGATG+TGG + chr4_3:45220818-45220837 Msa0642910:intron 35.0%
!! TGGAAGATTAGTCTTGTCTT+GGG + chr4_3:45220838-45220857 Msa0642910:intron 35.0%
ATCTTTCATTGACAAAGCTG+TGG + chr4_3:45221581-45221600 Msa0642910:CDS 35.0%
AAAAGAGCTTGTCCAAAAGA+TGG + chr4_3:45221659-45221678 Msa0642910:CDS 35.0%
CATTATTAACCCGTTTGGTT+TGG - chr4_3:45221848-45221867 None:intergenic 35.0%
!!! CGTCCTTCATTTGTTGATTT+TGG + chr4_3:45221968-45221987 Msa0642910:intron 35.0%
TCTTTCGTGCATGTTTGAAT+AGG - chr4_3:45222096-45222115 None:intergenic 35.0%
!! TGTGGAGAGTATTCCTATAA+GGG - chr4_3:45222157-45222176 None:intergenic 35.0%
!! TTGTGGAGAGTATTCCTATA+AGG - chr4_3:45222158-45222177 None:intergenic 35.0%
AGTTGCATCTAAGCAAAGTT+GGG + chr4_3:45222186-45222205 Msa0642910:CDS 35.0%
GGATGAGTAGTTTAAGAGTT+TGG + chr4_3:45222488-45222507 Msa0642910:three_prime_UTR 35.0%
GTTTAAGAGTTTGGTACAAC+TGG + chr4_3:45222497-45222516 Msa0642910:three_prime_UTR 35.0%
GGTGAAATTCTCAATTTGGA+TGG + chr4_3:45222580-45222599 Msa0642910:three_prime_UTR 35.0%
GGTCTCACCAAATTGAGTAT+TGG - chr4_3:45215774-45215793 None:intergenic 40.0%
TCATCTTTACATAGGACCAC+GGG + chr4_3:45215805-45215824 Msa0642910:five_prime_UTR 40.0%
TCCCTCGTGTACAATTTGTA+AGG + chr4_3:45215945-45215964 Msa0642910:five_prime_UTR 40.0%
CTCCTTACAAATTGTACACG+AGG - chr4_3:45215950-45215969 None:intergenic 40.0%
CTGAAATAAAGAGATGGAGG+AGG + chr4_3:45216061-45216080 Msa0642910:exon 40.0%
!!! GTTTTTTGTGGTAGTAGTCC+TGG + chr4_3:45216122-45216141 Msa0642910:CDS 40.0%
!! TTGTAGGGTTGAGTTTTGTC+CGG - chr4_3:45216260-45216279 None:intergenic 40.0%
CATCAAGGAACACCAAACAA+AGG - chr4_3:45216515-45216534 None:intergenic 40.0%
TGCGAATGAAGGAATTGATG+TGG - chr4_3:45216550-45216569 None:intergenic 40.0%
!! ATTACGAACCTTTTGGTGGT+GGG + chr4_3:45216615-45216634 Msa0642910:intron 40.0%
AGAATTTCGCTGACCACTTT+CGG + chr4_3:45217199-45217218 Msa0642910:intron 40.0%
TCTCAAGCTGTTTATGATGG+AGG + chr4_3:45217525-45217544 Msa0642910:CDS 40.0%
ATGGAGGTCGACATGTTATT+GGG + chr4_3:45217541-45217560 Msa0642910:CDS 40.0%
!! CTCTCCTATGGTAACTTGTT+TGG - chr4_3:45217722-45217741 None:intergenic 40.0%
AGATTGCCAGGTGTAATGAT+AGG - chr4_3:45217996-45218015 None:intergenic 40.0%
TATCATTACACCTGGCAATC+TGG + chr4_3:45217995-45218014 Msa0642910:intron 40.0%
ATCATTACACCTGGCAATCT+GGG + chr4_3:45217996-45218015 Msa0642910:intron 40.0%
!!! TTGGTGCCAATGTTTTTCGA+AGG + chr4_3:45218383-45218402 Msa0642910:intron 40.0%
!! CGAAGGAGACTAGTATTGAT+CGG + chr4_3:45218400-45218419 Msa0642910:intron 40.0%
CGATTCTTAGTCCTCATAAC+TGG + chr4_3:45218482-45218501 Msa0642910:intron 40.0%
ATGATTCGTGCAACAATGCA+TGG - chr4_3:45218750-45218769 None:intergenic 40.0%
GGATTATTCTTGTGTGTGAG+TGG + chr4_3:45218990-45219009 Msa0642910:intron 40.0%
GCATCAAAGAAAAGCTGAGA+TGG + chr4_3:45219067-45219086 Msa0642910:CDS 40.0%
! CTTTTATTGCCTTACCAGGT+TGG + chr4_3:45219105-45219124 Msa0642910:intron 40.0%
GGAGTAGAATATTGGTGGAA+TGG - chr4_3:45219134-45219153 None:intergenic 40.0%
ATCATATATTGAGGGACGGA+GGG - chr4_3:45219155-45219174 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4_3:45219497-45219516 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_3:45219497-45219516 Msa0642910:intron 40.0%
! ATATGCATTGGTACGTGTGT+CGG + chr4_3:45219624-45219643 Msa0642910:intron 40.0%
TATCCTCTGAACGTAACAAG+TGG + chr4_3:45220417-45220436 Msa0642910:intron 40.0%
! TATCCACTTGTTACGTTCAG+AGG - chr4_3:45220423-45220442 None:intergenic 40.0%
AGATAAGAACATACACCCTC+CGG + chr4_3:45220452-45220471 Msa0642910:intron 40.0%
!! TGTAGTGGATAGCAAAACAG+TGG + chr4_3:45220608-45220627 Msa0642910:intron 40.0%
AGACGTGCAAGAAACTCATA+AGG + chr4_3:45220770-45220789 Msa0642910:intron 40.0%
!! GTGGAAGATTAGTCTTGTCT+TGG + chr4_3:45220837-45220856 Msa0642910:intron 40.0%
GTCCATTATATGCATGAAGG+TGG + chr4_3:45221352-45221371 Msa0642910:intron 40.0%
AGCCACCTTCATGCATATAA+TGG - chr4_3:45221357-45221376 None:intergenic 40.0%
TATATGCATGAAGGTGGCTA+TGG + chr4_3:45221358-45221377 Msa0642910:intron 40.0%
ATATGCATGAAGGTGGCTAT+GGG + chr4_3:45221359-45221378 Msa0642910:intron 40.0%
AGCTTCTTGAGGTCATAACT+TGG + chr4_3:45221392-45221411 Msa0642910:CDS 40.0%
GCTTCTTGAGGTCATAACTT+GGG + chr4_3:45221393-45221412 Msa0642910:CDS 40.0%
GCATCCATGATAAACCAGTA+AGG + chr4_3:45221425-45221444 Msa0642910:intron 40.0%
!! GGAACCTTACTGGTTTATCA+TGG - chr4_3:45221432-45221451 None:intergenic 40.0%
AAAAATGGCAAGATTGAGGG+AGG - chr4_3:45221453-45221472 None:intergenic 40.0%
GTGGGATTGTTGAATGTAGA+TGG + chr4_3:45221540-45221559 Msa0642910:CDS 40.0%
TTTCATTGACAAAGCTGTGG+AGG + chr4_3:45221584-45221603 Msa0642910:CDS 40.0%
! GACAAGCTCTTTTGTTGATG+GGG - chr4_3:45221652-45221671 None:intergenic 40.0%
! GGACAAGCTCTTTTGTTGAT+GGG - chr4_3:45221653-45221672 None:intergenic 40.0%
! TGGACAAGCTCTTTTGTTGA+TGG - chr4_3:45221654-45221673 None:intergenic 40.0%
! AAGTACGTACCTCCATCTTT+TGG - chr4_3:45221674-45221693 None:intergenic 40.0%
CATTAAAATGGACGCACGTT+TGG - chr4_3:45221757-45221776 None:intergenic 40.0%
TAGACAAACGCCAAACCAAA+CGG + chr4_3:45221835-45221854 Msa0642910:intron 40.0%
TTCGTGCATGTTTGAATAGG+CGG - chr4_3:45222093-45222112 None:intergenic 40.0%
GATGCAACTCTTTCATGTTG+TGG - chr4_3:45222175-45222194 None:intergenic 40.0%
GAGTTGCATCTAAGCAAAGT+TGG + chr4_3:45222185-45222204 Msa0642910:CDS 40.0%
TCTAAGCAAAGTTGGGAAAC+TGG + chr4_3:45222193-45222212 Msa0642910:CDS 40.0%
CTAAGCAAAGTTGGGAAACT+GGG + chr4_3:45222194-45222213 Msa0642910:CDS 40.0%
ACTTGAGATGTCACAATGTG+AGG - chr4_3:45222233-45222252 None:intergenic 40.0%
! CATTGTGACATCTCAAGTTG+TGG + chr4_3:45222235-45222254 Msa0642910:three_prime_UTR 40.0%
AGAGAGAGATGAGAAGAGAG+AGG - chr4_3:45216203-45216222 None:intergenic 45.0%
AAGAATGGAGGGTGGACATT+AGG - chr4_3:45216389-45216408 None:intergenic 45.0%
TTTCCAAGAAGAATGGAGGG+TGG - chr4_3:45216397-45216416 None:intergenic 45.0%
! CATTACGAACCTTTTGGTGG+TGG + chr4_3:45216614-45216633 Msa0642910:intron 45.0%
!!! TTACGAACCTTTTGGTGGTG+GGG + chr4_3:45216616-45216635 Msa0642910:intron 45.0%
CTCTAGCGCATATTAGTCAC+CGG - chr4_3:45217181-45217200 None:intergenic 45.0%
GATGGAGGTCGACATGTTAT+TGG + chr4_3:45217540-45217559 Msa0642910:CDS 45.0%
TCATTACACCTGGCAATCTG+GGG + chr4_3:45217997-45218016 Msa0642910:intron 45.0%
GAGGGACAAAAATGCTCAGA+AGG - chr4_3:45218028-45218047 None:intergenic 45.0%
!! ATGCAGAGCTTTGAGAGAGA+GGG - chr4_3:45218046-45218065 None:intergenic 45.0%
!! TATGCAGAGCTTTGAGAGAG+AGG - chr4_3:45218047-45218066 None:intergenic 45.0%
! GATGTGAGGTACTACAAGTG+AGG - chr4_3:45218607-45218626 None:intergenic 45.0%
ATGATGAGGGCTTCAGAAGT+GGG - chr4_3:45218713-45218732 None:intergenic 45.0%
AATGATGAGGGCTTCAGAAG+TGG - chr4_3:45218714-45218733 None:intergenic 45.0%
! GCTCTCAAAGGCACATGTTA+AGG - chr4_3:45218917-45218936 None:intergenic 45.0%
! GACGCTTTTATTGCCTTACC+AGG + chr4_3:45219101-45219120 Msa0642910:CDS 45.0%
GATCATATATTGAGGGACGG+AGG - chr4_3:45219156-45219175 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4_3:45219496-45219515 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_3:45219496-45219515 Msa0642910:intron 45.0%
CTAGGTCATCTATTGACGGA+CGG + chr4_3:45219653-45219672 Msa0642910:intron 45.0%
! GGGGGCGCAATAAATATGAT+GGG - chr4_3:45220677-45220696 None:intergenic 45.0%
! AGGGGGCGCAATAAATATGA+TGG - chr4_3:45220678-45220697 None:intergenic 45.0%
GTAAATCCAATCGGCATAGG+GGG - chr4_3:45220695-45220714 None:intergenic 45.0%
GGTAAATCCAATCGGCATAG+GGG - chr4_3:45220696-45220715 None:intergenic 45.0%
GGGTAAATCCAATCGGCATA+GGG - chr4_3:45220697-45220716 None:intergenic 45.0%
AAATTGATGTCGGCCGAGAA+AGG + chr4_3:45220882-45220901 Msa0642910:intron 45.0%
CCTTCCTCAGTTTCCTTTCT+CGG - chr4_3:45220898-45220917 None:intergenic 45.0%
CGAGAAAGGAAACTGAGGAA+GGG + chr4_3:45220896-45220915 Msa0642910:intron 45.0%
GTCATAACTTGGGCTCAACT+TGG + chr4_3:45221403-45221422 Msa0642910:CDS 45.0%
ATTGACAAAGCTGTGGAGGA+AGG + chr4_3:45221588-45221607 Msa0642910:CDS 45.0%
AGAGCTTGTCCAAAAGATGG+AGG + chr4_3:45221662-45221681 Msa0642910:CDS 45.0%
AGACAAACGCCAAACCAAAC+GGG + chr4_3:45221836-45221855 Msa0642910:intron 45.0%
!!! AATTTCTAAAAAATTAAAAT+AGG - chr4_3:45218854-45218873 None:intergenic 5.0%
!!! CATTTAAATAATTATTTTTT+GGG + chr4_3:45220921-45220940 Msa0642910:intron 5.0%
!!! AATTTTTTTTTTTCAATATT+TGG + chr4_3:45221895-45221914 Msa0642910:intron 5.0%
!!! ATTTTTTTTTTTCAATATTT+GGG + chr4_3:45221896-45221915 Msa0642910:intron 5.0%
TGTCCACCCTCCATTCTTCT+TGG + chr4_3:45216391-45216410 Msa0642910:intron 50.0%
AGAAGAACCCCACCACCAAA+AGG - chr4_3:45216626-45216645 None:intergenic 50.0%
ATTTCGCTGACCACTTTCGG+TGG + chr4_3:45217202-45217221 Msa0642910:intron 50.0%
AGGAAAGATGCCACCGAAAG+TGG - chr4_3:45217215-45217234 None:intergenic 50.0%
GTTTATGGAGGAGGCAGCAT+TGG + chr4_3:45217486-45217505 Msa0642910:CDS 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG + chr4_3:45217494-45217513 Msa0642910:CDS 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG + chr4_3:45217495-45217514 Msa0642910:CDS 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG + chr4_3:45217496-45217515 Msa0642910:CDS 50.0%
!! CAGCATTGGTTTGATGGGGT+TGG + chr4_3:45217500-45217519 Msa0642910:CDS 50.0%
TCTCTTGGCATCAGTGTCCT+TGG - chr4_3:45217664-45217683 None:intergenic 50.0%
AAGGACACTGATGCCAAGAG+AGG + chr4_3:45217663-45217682 Msa0642910:CDS 50.0%
TGAGGACTAAGAATCGACCG+TGG - chr4_3:45218478-45218497 None:intergenic 50.0%
! AGTGGGTTTGTGCAGATCAC+TGG + chr4_3:45219008-45219027 Msa0642910:intron 50.0%
CAGATCACTGGAGAGACAGT+GGG + chr4_3:45219020-45219039 Msa0642910:intron 50.0%
AGAGACAGTGGGAGAAGTGA+AGG + chr4_3:45219031-45219050 Msa0642910:CDS 50.0%
GAATGGGAACCAACCTGGTA+AGG - chr4_3:45219117-45219136 None:intergenic 50.0%
CGGAGGGAGTAGAATATTGG+TGG - chr4_3:45219139-45219158 None:intergenic 50.0%
GGACGGAGGGAGTAGAATAT+TGG - chr4_3:45219142-45219161 None:intergenic 50.0%
TACGTGTGTCGGAGTCAACT+AGG + chr4_3:45219635-45219654 Msa0642910:intron 50.0%
! GTCATCTATTGACGGACGGA+GGG + chr4_3:45219657-45219676 Msa0642910:intron 50.0%
! ATAGTGACCAGAGGGTGTAG+TGG + chr4_3:45220593-45220612 Msa0642910:intron 50.0%
TTGCTATCCACTACACCCTC+TGG - chr4_3:45220603-45220622 None:intergenic 50.0%
GGGGTAAATCCAATCGGCAT+AGG - chr4_3:45220698-45220717 None:intergenic 50.0%
CCGAGAAAGGAAACTGAGGA+AGG + chr4_3:45220895-45220914 Msa0642910:intron 50.0%
GACACTTGAGGAGCTTCTTG+AGG + chr4_3:45221381-45221400 Msa0642910:CDS 50.0%
GATTGAGGGAGGAACCTTAC+TGG - chr4_3:45221442-45221461 None:intergenic 50.0%
AAGTTGGGAAACTGGGAAGC+TGG + chr4_3:45222201-45222220 Msa0642910:CDS 50.0%
! GCTTCAGAAGTGGGCTCAAG+TGG - chr4_3:45218704-45218723 None:intergenic 55.0%
GCAGATCACTGGAGAGACAG+TGG + chr4_3:45219019-45219038 Msa0642910:intron 55.0%
GGAGAAGTGAAGGCAGTAGC+AGG + chr4_3:45219041-45219060 Msa0642910:CDS 55.0%
TGGTGGAATGGGAACCAACC+TGG - chr4_3:45219122-45219141 None:intergenic 55.0%
! GGTCATCTATTGACGGACGG+AGG + chr4_3:45219656-45219675 Msa0642910:intron 55.0%
CGGCGACAACCTCAAACCTT+TGG - chr4_3:45220373-45220392 None:intergenic 55.0%
TCGGCCGAGAAAGGAAACTG+AGG + chr4_3:45220891-45220910 Msa0642910:intron 55.0%
AGGTGGCTATGGGACACTTG+AGG + chr4_3:45221369-45221388 Msa0642910:intron 55.0%
AGGACATGCCCCAGATTGCC+AGG - chr4_3:45218008-45218027 None:intergenic 60.0%
ATTGCGCCCCCTATGCCGAT+TGG + chr4_3:45220686-45220705 Msa0642910:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45215764 45222648 45215764 ID=Msa0642910;Name=Msa0642910
chr4_3 mRNA 45215764 45222648 45215764 ID=Msa0642910-mRNA-1;Parent=Msa0642910;Name=Msa0642910-mRNA-1;_AED=0.14;_eAED=0.14;_QI=310|1|1|1|0.85|0.75|8|399|209
chr4_3 exon 45215764 45216193 45215764 ID=Msa0642910-mRNA-1:exon:10409;Parent=Msa0642910-mRNA-1
chr4_3 exon 45217465 45217562 45217465 ID=Msa0642910-mRNA-1:exon:10410;Parent=Msa0642910-mRNA-1
chr4_3 exon 45217654 45217684 45217654 ID=Msa0642910-mRNA-1:exon:10411;Parent=Msa0642910-mRNA-1
chr4_3 exon 45219023 45219122 45219023 ID=Msa0642910-mRNA-1:exon:10412;Parent=Msa0642910-mRNA-1
chr4_3 exon 45221371 45221441 45221371 ID=Msa0642910-mRNA-1:exon:10413;Parent=Msa0642910-mRNA-1
chr4_3 exon 45221540 45221683 45221540 ID=Msa0642910-mRNA-1:exon:10414;Parent=Msa0642910-mRNA-1
chr4_3 exon 45222163 45222345 45222163 ID=Msa0642910-mRNA-1:exon:10415;Parent=Msa0642910-mRNA-1
chr4_3 exon 45222367 45222648 45222367 ID=Msa0642910-mRNA-1:exon:10416;Parent=Msa0642910-mRNA-1
chr4_3 five_prime_UTR 45215764 45216073 45215764 ID=Msa0642910-mRNA-1:five_prime_utr;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45216074 45216193 45216074 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45217465 45217562 45217465 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45217654 45217684 45217654 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45219023 45219122 45219023 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45221371 45221441 45221371 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45221540 45221683 45221540 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 CDS 45222163 45222228 45222163 ID=Msa0642910-mRNA-1:cds;Parent=Msa0642910-mRNA-1
chr4_3 three_prime_UTR 45222229 45222345 45222229 ID=Msa0642910-mRNA-1:three_prime_utr;Parent=Msa0642910-mRNA-1
chr4_3 three_prime_UTR 45222367 45222648 45222367 ID=Msa0642910-mRNA-1:three_prime_utr;Parent=Msa0642910-mRNA-1
Gene Sequence

>Msa0642910

ATGGAGGAGGAAAGTGAGATGAAAGAATCAAAGTTTAAGAGGATTTGTGTTTTTTGTGGTAGTAGTCCTGGTAACAAGAGTAGCTATAAAGATGCTGCTATTGAACTTGGAAATGAGTTGGTGTCAAGAAATATTGATTTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGGTTTCTCAAGCTGTTTATGATGGAGGTCGACATGTTATTGGGGTTATTCCAAGGACACTGATGCCAAGAGAGATCACTGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGGCATGCATCAAAGAAAAGCTGAGATGGCCAAGCATTCTGACGCTTTTATTGCCTTACCAGGTGGCTATGGGACACTTGAGGAGCTTCTTGAGGTCATAACTTGGGCTCAACTTGGCATCCATGATAAACCAGTGGGATTGTTGAATGTAGATGGCTACTACAATTCTTTGTTATCTTTCATTGACAAAGCTGTGGAGGAAGGCTTCATTAGCCCTAAAGCTCGTCATATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCCAAAAGATGGAGGAATACTCTCCACAACATGAAAGAGTTGCATCTAAGCAAAGTTGGGAAACTGGGAAGCTGGATTAG

Protein sequence

>Msa0642910

MEEESEMKESKFKRICVFCGSSPGNKSSYKDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPRTLMPREITGETVGEVKAVAGMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPKARHIIVSAPSTKELVQKMEEYSPQHERVASKQSWETGKLD*