AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0634270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634270 MtrunA17_Chr4g0013261 90.678 118 10 1 1 118 1 117 1.86e-72 211
Msa0634270 MtrunA17_Chr4g0013251 81.356 118 21 1 1 118 1 117 3.22e-65 193
Msa0634270 MtrunA17_Chr4g0012951 70.085 117 33 1 1 117 1 115 4.25e-52 160
Msa0634270 MtrunA17_Chr4g0013001 66.667 117 37 1 1 117 1 115 1.74e-49 153
Msa0634270 MtrunA17_Chr4g0012991 66.667 117 37 1 1 117 56 170 1.20e-48 153
Msa0634270 MtrunA17_Chr4g0012961 64.957 117 39 1 1 117 1 115 2.03e-48 150
Msa0634270 MtrunA17_Chr4g0013211 50.427 117 56 2 1 117 1 115 3.27e-30 104
Msa0634270 MtrunA17_Chr4g0012891 48.246 114 51 4 11 117 14 126 1.06e-25 93.6
Msa0634270 MtrunA17_Chr7g0244691 44.037 109 57 3 12 118 14 120 3.97e-25 91.7
Msa0634270 MtrunA17_Chr2g0309241 39.316 117 67 3 1 116 1 114 7.96e-24 88.2
Msa0634270 MtrunA17_Chr7g0244831 43.590 117 61 4 4 118 7 120 3.40e-23 87.0
Msa0634270 MtrunA17_Chr7g0244841 40.367 109 62 3 11 118 13 119 6.71e-22 83.6
Msa0634270 MtrunA17_Chr4g0012901 38.983 118 70 2 1 117 5 121 8.89e-22 83.2
Msa0634270 MtrunA17_Chr7g0244671 35.043 117 70 2 4 114 1 117 3.50e-21 82.4
Msa0634270 MtrunA17_Chr7g0244641 34.454 119 72 2 4 116 1 119 4.23e-21 81.6
Msa0634270 MtrunA17_Chr3g0107481 33.628 113 74 1 5 117 3 114 1.58e-20 79.7
Msa0634270 MtrunA17_Chr4g0012921 35.593 118 75 1 1 117 1 118 2.27e-19 77.0
Msa0634270 MtrunA17_Chr7g0244811 33.898 118 74 2 1 116 5 120 2.09e-17 72.0
Msa0634270 MtrunA17_Chr7g0244741 36.441 118 72 1 2 116 3 120 1.04e-16 70.5
Msa0634270 MtrunA17_Chr3g0104951 31.624 117 76 3 4 117 7 122 6.30e-16 68.2
Msa0634270 MtrunA17_Chr3g0104931 31.624 117 76 3 4 117 7 122 6.30e-16 68.2
Msa0634270 MtrunA17_Chr3g0104941 31.624 117 76 3 4 117 7 122 6.30e-16 68.2
Msa0634270 MtrunA17_Chr4g0012931 32.500 120 76 3 1 117 1 118 1.07e-15 68.2
Msa0634270 MtrunA17_Chr7g0244721 31.624 117 78 1 2 116 3 119 1.78e-15 67.0
Msa0634270 MtrunA17_Chr3g0104921 32.743 113 72 3 8 117 1 112 1.87e-15 67.0
Msa0634270 MtrunA17_Chr3g0104911 32.743 113 72 3 8 117 1 112 1.87e-15 67.0
Msa0634270 MtrunA17_Chr3g0104971 30.769 117 77 3 4 117 7 122 2.53e-15 66.6
Msa0634270 MtrunA17_Chr3g0095931 33.645 107 64 4 12 115 15 117 2.70e-15 66.6
Msa0634270 MtrunA17_Chr3g0101431 31.967 122 77 4 1 117 1 121 2.72e-15 66.6
Msa0634270 MtrunA17_Chr3g0105021 35.484 93 57 2 27 117 31 122 3.46e-15 66.6
Msa0634270 MtrunA17_Chr3g0105011 35.484 93 57 2 27 117 31 122 3.46e-15 66.6
Msa0634270 MtrunA17_Chr3g0105041 31.624 117 76 3 4 117 7 122 3.85e-15 66.2
Msa0634270 MtrunA17_Chr3g0104981 31.034 116 76 3 4 116 7 121 4.28e-15 66.2
Msa0634270 MtrunA17_Chr3g0104901 31.304 115 75 3 6 117 9 122 4.78e-15 66.2
Msa0634270 MtrunA17_Chr7g0233431 30.556 108 74 1 10 116 23 130 5.27e-15 66.2
Msa0634270 MtrunA17_Chr3g0104991 35.484 93 57 2 27 117 31 122 5.61e-15 65.9
Msa0634270 MtrunA17_Chr3g0105001 31.304 115 75 3 4 115 7 120 6.79e-15 65.5
Msa0634270 MtrunA17_Chr7g0244821 34.211 114 73 2 2 114 3 115 1.28e-14 65.1
Msa0634270 MtrunA17_Chr7g0244681 35.088 114 73 1 2 114 3 116 2.62e-14 63.9
Msa0634270 MtrunA17_Chr3g0095991 30.435 115 76 3 4 115 7 120 3.49e-14 63.9
Msa0634270 MtrunA17_Chr3g0104961 29.915 117 78 3 4 117 7 122 3.94e-14 63.5
Msa0634270 MtrunA17_Chr1g0165761 34.454 119 71 3 4 116 1 118 5.41e-14 63.2
Msa0634270 MtrunA17_Chr3g0096021 30.435 115 76 3 4 115 7 120 8.70e-14 62.8
Msa0634270 MtrunA17_Chr3g0105031 34.066 91 57 2 27 115 21 110 1.94e-13 61.6
Msa0634270 MtrunA17_Chr3g0096031 30.435 115 76 3 4 115 7 120 2.34e-13 61.6
Msa0634270 MtrunA17_Chr3g0095951 29.565 115 77 3 4 115 7 120 2.39e-13 61.6
Msa0634270 MtrunA17_Chr7g0244661 36.111 108 60 3 11 116 13 113 9.08e-13 60.1
Msa0634270 MtrunA17_Chr7g0244791 31.034 116 75 2 6 116 8 123 4.91e-12 58.5
Msa0634270 MtrunA17_Chr7g0244761 32.759 116 77 1 2 116 28 143 2.17e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634270 AT5G59320.1 47.273 110 57 1 8 117 7 115 1.50e-28 100
Msa0634270 AT5G59310.1 46.364 110 55 2 8 117 7 112 1.48e-26 95.5
Msa0634270 AT3G51590.1 45.370 108 56 1 12 116 8 115 2.31e-25 92.8
Msa0634270 AT2G38540.1 48.276 116 56 4 4 117 5 118 3.43e-25 92.4
Msa0634270 AT3G51600.1 49.074 108 52 3 12 117 12 118 2.26e-24 90.1
Msa0634270 AT2G38530.1 46.087 115 60 2 4 117 5 118 4.06e-24 89.4
Msa0634270 AT5G01870.1 43.590 117 61 4 4 117 2 116 3.04e-23 87.4
Msa0634270 AT4G33355.1 43.519 108 57 1 13 116 11 118 3.33e-23 87.4
Msa0634270 AT4G33355.2 42.453 106 57 1 13 114 11 116 6.08e-22 84.0
Msa0634270 AT3G08770.1 44.330 97 50 3 24 117 18 113 1.69e-20 80.1
Msa0634270 AT3G08770.2 44.211 95 49 3 24 115 18 111 1.89e-19 77.4
Msa0634270 AT2G15050.3 39.286 112 62 4 12 117 11 122 4.04e-19 77.0
Msa0634270 AT2G15050.1 39.091 110 61 4 12 115 11 120 9.75e-18 73.6
Msa0634270 AT2G15050.2 39.806 103 58 3 12 110 11 113 3.09e-17 72.0
Msa0634270 AT2G18370.1 35.789 95 59 2 23 116 22 115 9.65e-16 68.2

Find 55 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTCTACTAACTGTAAT+AGG 0.249879 4_3:-21200047 Msa0634270:intron
AGATAAGAGAGGGAGGTATT+TGG 0.311177 4_3:+21200495 Msa0634280:intron
GGAGGTATTTGGTATGTGTT+TGG 0.325580 4_3:+21200506 Msa0634280:intron
TGAGCAACAACAATAAATAT+AGG 0.333781 4_3:+21198931 None:intergenic
GCAGTTGCAAGCAGTCTTGC+GGG 0.361401 4_3:+21200164 None:intergenic
TTAGAAATTACAATTTGCTT+TGG 0.364398 4_3:+21200416 Msa0634280:intron
GCACTATAGCTGTAGAATAA+AGG 0.369849 4_3:-21199131 Msa0634270:three_prime_UTR
CTTGCGGGCGGGGCCGTTGT+TGG 0.370391 4_3:+21200179 None:intergenic
TGCAAGCAGTCTTGCGGGCG+GGG 0.373033 4_3:+21200169 None:intergenic
CCATGCATTACTTATCTTCA+AGG 0.382464 4_3:-21200258 Msa0634270:CDS
TACATGTGCAACAACCAAAC+TGG 0.389230 4_3:+21199019 None:intergenic
GAGCAACAACAATAAATATA+GGG 0.399826 4_3:+21198932 None:intergenic
AGTAGAAGTGCTAAACTTGT+AGG 0.409303 4_3:+21200059 None:intergenic
TTGCAAGCAGTCTTGCGGGC+GGG 0.409587 4_3:+21200168 None:intergenic
ACTTATCTTCAAGGTGGTGC+TGG 0.410647 4_3:-21200249 Msa0634270:CDS
GTGACTGCTGCCTCTGCCAT+TGG 0.435322 4_3:+21200309 Msa0634280:intron
GATAAGTAATGCATGGAGTA+AGG 0.447792 4_3:+21200265 None:intergenic
TGCAATTATGTGCATGGTGG+TGG 0.466945 4_3:-21200340 Msa0634270:CDS
AACTGCTTGAAAAGTGCTGC+TGG 0.487551 4_3:-21200147 Msa0634270:CDS
ATGTTAACACCACATTTGCC+AGG 0.490963 4_3:+21200084 None:intergenic
GCTGCTCTCCCTGGCAAATG+TGG 0.495611 4_3:-21200093 Msa0634270:CDS
AGCAGTTGCAAGCAGTCTTG+CGG 0.506600 4_3:+21200163 None:intergenic
GTTGTTATTCAAACGAGCAA+TGG 0.508618 4_3:+21200122 None:intergenic
AACCAAGCTGCTGCTCTCCC+TGG 0.514408 4_3:-21200102 Msa0634270:CDS
GGTGGAGTGAGGAGACTTAA+CGG 0.519956 4_3:-21200207 Msa0634270:CDS
TGCCAGGGAGAGCAGCAGCT+TGG 0.525683 4_3:+21200100 None:intergenic
CAAGAGGAAACTCGCAGAAG+TGG 0.528500 4_3:+21199092 None:intergenic
TACAATTGTTAAATGTAGCA+TGG 0.533974 4_3:+21198970 None:intergenic
AGAGAAAGAAGAAGATAGCA+TGG 0.537528 4_3:-21199180 Msa0634270:three_prime_UTR
TTTGGCTGCAATTATGTGCA+TGG 0.538143 4_3:-21200346 Msa0634270:CDS
GGTCCATCTGCAGCATGCTG+TGG 0.539612 4_3:-21200228 Msa0634270:CDS
GTTGCAAGCAGTCTTGCGGG+CGG 0.541246 4_3:+21200167 None:intergenic
TTATTCTACAGCTATAGTGC+TGG 0.541332 4_3:+21199134 None:intergenic
TATTAAGTGTTGCAAGGTGT+TGG 0.542388 4_3:+21200462 Msa0634280:intron
AATTATAAGTTTGAAACAAG+AGG 0.546998 4_3:+21199076 None:intergenic
GTTTATATAGAAGATAAGAG+AGG 0.548600 4_3:+21200484 Msa0634280:intron
CCATCTGCAGCATGCTGTGG+TGG 0.550747 4_3:-21200225 Msa0634270:CDS
GTAGAAGTGCTAAACTTGTA+GGG 0.551668 4_3:+21200060 None:intergenic
TTTATATAGAAGATAAGAGA+GGG 0.552056 4_3:+21200485 Msa0634280:intron
GTCACATGTGGACAAGTAGT+AGG 0.553840 4_3:-21200291 Msa0634270:CDS
TTCTTTCACTAGAGAAACAA+TGG 0.554334 4_3:-21200388 Msa0634270:exon
GAATAAAGGAAGAGCAATGA+GGG 0.557023 4_3:-21199117 Msa0634270:three_prime_UTR
GGTTACTGCACCAATGGCAG+AGG 0.568355 4_3:-21200319 Msa0634270:CDS
CCACCACAGCATGCTGCAGA+TGG 0.580113 4_3:+21200225 None:intergenic
ATATAGAAGATAAGAGAGGG+AGG 0.590396 4_3:+21200488 Msa0634280:intron
TGTGAGTATTAAGTGTTGCA+AGG 0.594556 4_3:+21200456 Msa0634280:intron
GGTGGTGGTTACTGCACCAA+TGG 0.601083 4_3:-21200325 Msa0634270:CDS
CCTTGAAGATAAGTAATGCA+TGG 0.607580 4_3:+21200258 None:intergenic
GCAGAGGCAGCAGTCACATG+TGG 0.630368 4_3:-21200303 Msa0634270:CDS
AGAATAAAGGAAGAGCAATG+AGG 0.632653 4_3:-21199118 Msa0634270:three_prime_UTR
CTTAACGGTGCTGCCAACAA+CGG 0.636452 4_3:-21200192 Msa0634270:CDS
TGTTAACACCACATTTGCCA+GGG 0.642773 4_3:+21200085 None:intergenic
CAGCATGCTGTGGTGGAGTG+AGG 0.648040 4_3:-21200218 Msa0634270:CDS
TGCATTACTTATCTTCAAGG+TGG 0.657751 4_3:-21200255 Msa0634270:CDS
GGCTGCAATTATGTGCATGG+TGG 0.657959 4_3:-21200343 Msa0634270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTTAAAA+TGG - chr4_3:21199774-21199793 Msa0634270:intron 0.0%
!!! ATTTTTTTTTTTTTTTAAAA+TGG - chr4_3:21199774-21199793 Msa0634270:intron 0.0%
!!! CAAATTAAATATTTTGAAAT+TGG + chr4_3:21198921-21198940 None:intergenic 10.0%
!!! CAAATTAAATATTTTGAAAT+TGG + chr4_3:21198921-21198940 None:intergenic 10.0%
!! TTTATATAGAAGATAAGAGA+GGG + chr4_3:21198968-21198987 None:intergenic 20.0%
!!! TTAGAAATTACAATTTGCTT+TGG + chr4_3:21199037-21199056 None:intergenic 20.0%
!! GGCAAATTTAATAAGTTATT+CGG + chr4_3:21199734-21199753 None:intergenic 20.0%
!!! AATTATAAGTTTGAAACAAG+AGG + chr4_3:21200377-21200396 Msa0634280:intron 20.0%
!! TTTATATAGAAGATAAGAGA+GGG + chr4_3:21198968-21198987 None:intergenic 20.0%
!!! TTAGAAATTACAATTTGCTT+TGG + chr4_3:21199037-21199056 None:intergenic 20.0%
!! GGCAAATTTAATAAGTTATT+CGG + chr4_3:21199734-21199753 None:intergenic 20.0%
!!! AATTATAAGTTTGAAACAAG+AGG + chr4_3:21200377-21200396 Msa0634280:intron 20.0%
! GTTTATATAGAAGATAAGAG+AGG + chr4_3:21198969-21198988 None:intergenic 25.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr4_3:21199477-21199496 Msa0634270:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr4_3:21199602-21199621 Msa0634270:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr4_3:21199603-21199622 Msa0634270:intron 25.0%
! CACACACATACATATATATA+GGG + chr4_3:21199638-21199657 None:intergenic 25.0%
! ACACACACATACATATATAT+AGG + chr4_3:21199639-21199658 None:intergenic 25.0%
! ATTTGCCTAAAAAAATGAAG+TGG - chr4_3:21199747-21199766 Msa0634270:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr4_3:21199755-21199774 None:intergenic 25.0%
! TGAGACATTGAAATGATAAT+TGG - chr4_3:21199893-21199912 Msa0634270:intron 25.0%
!! TTTTCTTTTTCTTTCCAGTT+TGG - chr4_3:21200417-21200436 Msa0634270:five_prime_UTR 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr4_3:21200483-21200502 Msa0634280:intron 25.0%
! GAGCAACAACAATAAATATA+GGG + chr4_3:21200521-21200540 Msa0634280:intron 25.0%
! TGAGCAACAACAATAAATAT+AGG + chr4_3:21200522-21200541 Msa0634280:intron 25.0%
! GTTTATATAGAAGATAAGAG+AGG + chr4_3:21198969-21198988 None:intergenic 25.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr4_3:21199477-21199496 Msa0634270:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr4_3:21199602-21199621 Msa0634270:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr4_3:21199603-21199622 Msa0634270:intron 25.0%
! CACACACATACATATATATA+GGG + chr4_3:21199638-21199657 None:intergenic 25.0%
! ACACACACATACATATATAT+AGG + chr4_3:21199639-21199658 None:intergenic 25.0%
! ATTTGCCTAAAAAAATGAAG+TGG - chr4_3:21199747-21199766 Msa0634270:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr4_3:21199755-21199774 None:intergenic 25.0%
! TGAGACATTGAAATGATAAT+TGG - chr4_3:21199893-21199912 Msa0634270:intron 25.0%
!! TTTTCTTTTTCTTTCCAGTT+TGG - chr4_3:21200417-21200436 Msa0634270:five_prime_UTR 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr4_3:21200483-21200502 Msa0634280:intron 25.0%
! GAGCAACAACAATAAATATA+GGG + chr4_3:21200521-21200540 Msa0634280:intron 25.0%
! TGAGCAACAACAATAAATAT+AGG + chr4_3:21200522-21200541 Msa0634280:intron 25.0%
TTCTTTCACTAGAGAAACAA+TGG - chr4_3:21199062-21199081 Msa0634270:three_prime_UTR 30.0%
!! TATTTTTGTTCCACTTCTTC+AGG + chr4_3:21199711-21199730 None:intergenic 30.0%
GACATTGAAATGATAATTGG+AGG - chr4_3:21199896-21199915 Msa0634270:intron 30.0%
ATTGAAATGATAATTGGAGG+AGG - chr4_3:21199899-21199918 Msa0634270:intron 30.0%
! TTGAGTGACTTATGCATTTT+TGG - chr4_3:21200015-21200034 Msa0634270:intron 30.0%
ACTATCTATATGCTCATGAA+AGG + chr4_3:21200147-21200166 None:intergenic 30.0%
TTCTTTCACTAGAGAAACAA+TGG - chr4_3:21199062-21199081 Msa0634270:three_prime_UTR 30.0%
!! TATTTTTGTTCCACTTCTTC+AGG + chr4_3:21199711-21199730 None:intergenic 30.0%
GACATTGAAATGATAATTGG+AGG - chr4_3:21199896-21199915 Msa0634270:intron 30.0%
ATTGAAATGATAATTGGAGG+AGG - chr4_3:21199899-21199918 Msa0634270:intron 30.0%
! TTGAGTGACTTATGCATTTT+TGG - chr4_3:21200015-21200034 Msa0634270:intron 30.0%
ACTATCTATATGCTCATGAA+AGG + chr4_3:21200147-21200166 None:intergenic 30.0%
ATATAGAAGATAAGAGAGGG+AGG + chr4_3:21198965-21198984 None:intergenic 35.0%
! TATTAAGTGTTGCAAGGTGT+TGG + chr4_3:21198991-21199010 None:intergenic 35.0%
! TGTGAGTATTAAGTGTTGCA+AGG + chr4_3:21198997-21199016 None:intergenic 35.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr4_3:21199086-21199105 Msa0634270:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr4_3:21199188-21199207 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_3:21199195-21199214 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_3:21199192-21199211 Msa0634270:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr4_3:21199195-21199214 Msa0634270:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_3:21199331-21199350 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr4_3:21199393-21199412 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr4_3:21199394-21199413 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr4_3:21199403-21199422 Msa0634270:intron 35.0%
!!! TCATCATCTTTTTAGCTTGG+AGG + chr4_3:21199856-21199875 None:intergenic 35.0%
!!! TGGTCATCATCTTTTTAGCT+TGG + chr4_3:21199859-21199878 None:intergenic 35.0%
! GTCTCACTCTCACTTAATTT+TGG + chr4_3:21199879-21199898 None:intergenic 35.0%
! TTTTTGGACACTCATCAAGA+TGG - chr4_3:21200031-21200050 Msa0634270:intron 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr4_3:21200270-21200289 Msa0634270:CDS 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr4_3:21200319-21200338 Msa0634280:intron 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr4_3:21200319-21200338 Msa0634270:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr4_3:21200332-21200351 Msa0634270:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr4_3:21200333-21200352 Msa0634270:CDS 35.0%
ATATAGAAGATAAGAGAGGG+AGG + chr4_3:21198965-21198984 None:intergenic 35.0%
! TATTAAGTGTTGCAAGGTGT+TGG + chr4_3:21198991-21199010 None:intergenic 35.0%
! TGTGAGTATTAAGTGTTGCA+AGG + chr4_3:21198997-21199016 None:intergenic 35.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr4_3:21199086-21199105 Msa0634270:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr4_3:21199188-21199207 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_3:21199195-21199214 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_3:21199192-21199211 Msa0634270:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr4_3:21199195-21199214 Msa0634270:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_3:21199331-21199350 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr4_3:21199393-21199412 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr4_3:21199394-21199413 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr4_3:21199403-21199422 Msa0634270:intron 35.0%
!!! TCATCATCTTTTTAGCTTGG+AGG + chr4_3:21199856-21199875 None:intergenic 35.0%
!!! TGGTCATCATCTTTTTAGCT+TGG + chr4_3:21199859-21199878 None:intergenic 35.0%
! GTCTCACTCTCACTTAATTT+TGG + chr4_3:21199879-21199898 None:intergenic 35.0%
! TTTTTGGACACTCATCAAGA+TGG - chr4_3:21200031-21200050 Msa0634270:intron 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr4_3:21200270-21200289 Msa0634270:CDS 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr4_3:21200319-21200338 Msa0634280:intron 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr4_3:21200319-21200338 Msa0634270:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr4_3:21200332-21200351 Msa0634270:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr4_3:21200333-21200352 Msa0634270:CDS 35.0%
!! GGAGGTATTTGGTATGTGTT+TGG + chr4_3:21198947-21198966 None:intergenic 40.0%
!! AGATAAGAGAGGGAGGTATT+TGG + chr4_3:21198958-21198977 None:intergenic 40.0%
TTTGGCTGCAATTATGTGCA+TGG - chr4_3:21199104-21199123 Msa0634270:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr4_3:21199368-21199387 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr4_3:21199369-21199388 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr4_3:21199491-21199510 Msa0634270:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr4_3:21199620-21199639 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr4_3:21200225-21200244 Msa0634270:CDS 40.0%
TACATGTGCAACAACCAAAC+TGG + chr4_3:21200434-21200453 Msa0634280:intron 40.0%
!! GGAGGTATTTGGTATGTGTT+TGG + chr4_3:21198947-21198966 None:intergenic 40.0%
!! AGATAAGAGAGGGAGGTATT+TGG + chr4_3:21198958-21198977 None:intergenic 40.0%
TTTGGCTGCAATTATGTGCA+TGG - chr4_3:21199104-21199123 Msa0634270:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr4_3:21199368-21199387 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr4_3:21199369-21199388 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr4_3:21199491-21199510 Msa0634270:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr4_3:21199620-21199639 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr4_3:21200225-21200244 Msa0634270:CDS 40.0%
TACATGTGCAACAACCAAAC+TGG + chr4_3:21200434-21200453 Msa0634280:intron 40.0%
TGCAATTATGTGCATGGTGG+TGG - chr4_3:21199110-21199129 Msa0634270:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr4_3:21199159-21199178 Msa0634270:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr4_3:21199201-21199220 Msa0634270:exon 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_3:21199303-21199322 Msa0634270:intron 45.0%
ATCTCAAGTGCCTGAAGAAG+TGG - chr4_3:21199698-21199717 Msa0634270:intron 45.0%
TGCAATTATGTGCATGGTGG+TGG - chr4_3:21199110-21199129 Msa0634270:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr4_3:21199159-21199178 Msa0634270:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr4_3:21199201-21199220 Msa0634270:exon 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_3:21199303-21199322 Msa0634270:intron 45.0%
ATCTCAAGTGCCTGAAGAAG+TGG - chr4_3:21199698-21199717 Msa0634270:intron 45.0%
!!! TTTATATTTTATAAAATAAG+TGG - chr4_3:21199983-21200002 Msa0634270:intron 5.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr4_3:21200573-21200592 Msa0634270:five_prime_UTR 5.0%
!!! TTTATATTTTATAAAATAAG+TGG - chr4_3:21199983-21200002 Msa0634270:intron 5.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr4_3:21200573-21200592 Msa0634270:five_prime_UTR 5.0%
GGCTGCAATTATGTGCATGG+TGG - chr4_3:21199107-21199126 Msa0634270:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr4_3:21199243-21199262 Msa0634270:intron 50.0%
!! CTTAACGGTGCTGCCAACAA+CGG - chr4_3:21199258-21199277 Msa0634270:intron 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr4_3:21199290-21199309 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr4_3:21200361-21200380 Msa0634280:intron 50.0%
GGCTGCAATTATGTGCATGG+TGG - chr4_3:21199107-21199126 Msa0634270:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr4_3:21199243-21199262 Msa0634270:intron 50.0%
!! CTTAACGGTGCTGCCAACAA+CGG - chr4_3:21199258-21199277 Msa0634270:intron 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr4_3:21199290-21199309 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr4_3:21200361-21200380 Msa0634280:intron 50.0%
! GGTGGTGGTTACTGCACCAA+TGG - chr4_3:21199125-21199144 Msa0634270:three_prime_UTR 55.0%
GGTTACTGCACCAATGGCAG+AGG - chr4_3:21199131-21199150 Msa0634270:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr4_3:21199289-21199308 None:intergenic 55.0%
! GGTGGTGGTTACTGCACCAA+TGG - chr4_3:21199125-21199144 Msa0634270:three_prime_UTR 55.0%
GGTTACTGCACCAATGGCAG+AGG - chr4_3:21199131-21199150 Msa0634270:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr4_3:21199289-21199308 None:intergenic 55.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr4_3:21199144-21199163 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr4_3:21199147-21199166 Msa0634270:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr4_3:21199222-21199241 Msa0634270:intron 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr4_3:21199228-21199247 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr4_3:21199225-21199244 Msa0634270:intron 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr4_3:21199232-21199251 Msa0634270:intron 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr4_3:21199285-21199304 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr4_3:21199286-21199305 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_3:21199348-21199367 Msa0634270:intron 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_3:21199357-21199376 Msa0634270:intron 60.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr4_3:21199144-21199163 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr4_3:21199147-21199166 Msa0634270:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr4_3:21199222-21199241 Msa0634270:intron 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr4_3:21199228-21199247 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr4_3:21199225-21199244 Msa0634270:intron 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr4_3:21199232-21199251 Msa0634270:intron 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr4_3:21199285-21199304 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr4_3:21199286-21199305 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_3:21199348-21199367 Msa0634270:intron 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_3:21199357-21199376 Msa0634270:intron 60.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr4_3:21199284-21199303 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_3:21199353-21199372 None:intergenic 65.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr4_3:21199284-21199303 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_3:21199353-21199372 None:intergenic 65.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr4_3:21199274-21199293 None:intergenic 75.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr4_3:21199274-21199293 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 21198867 21200605 21198867 ID=Msa0634270;Name=Msa0634270
chr4_3 mRNA 21198867 21200605 21198867 ID=Msa0634270-mRNA-1;Parent=Msa0634270;Name=Msa0634270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=214|1|1|1|1|1|2|352|118
chr4_3 exon 21198867 21199231 21198867 ID=Msa0634270-mRNA-1:exon:5557;Parent=Msa0634270-mRNA-1
chr4_3 exon 21200048 21200605 21200048 ID=Msa0634270-mRNA-1:exon:5556;Parent=Msa0634270-mRNA-1
chr4_3 five_prime_UTR 21200392 21200605 21200392 ID=Msa0634270-mRNA-1:five_prime_utr;Parent=Msa0634270-mRNA-1
chr4_3 CDS 21200048 21200391 21200048 ID=Msa0634270-mRNA-1:cds;Parent=Msa0634270-mRNA-1
chr4_3 CDS 21199219 21199231 21199219 ID=Msa0634270-mRNA-1:cds;Parent=Msa0634270-mRNA-1
chr4_3 three_prime_UTR 21198867 21199218 21198867 ID=Msa0634270-mRNA-1:three_prime_utr;Parent=Msa0634270-mRNA-1
Gene Sequence

>Msa0634270

ATGGCAAGCATGAGAGTTGCATTTTTGGCTGCAATTATGTGCATGGTGGTGGTTACTGCACCAATGGCAGAGGCAGCAGTCACATGTGGACAAGTAGTAGGTTTCCTTACTCCATGCATTACTTATCTTCAAGGTGGTGCTGGTCCATCTGCAGCATGCTGTGGTGGAGTGAGGAGACTTAACGGTGCTGCCAACAACGGCCCCGCCCGCAAGACTGCTTGCAACTGCTTGAAAAGTGCTGCTGGTTCCATTGCTCGTTTGAATAACAACCAAGCTGCTGCTCTCCCTGGCAAATGTGGTGTTAACATTCCCTACAAGTTTAGCACTTCTACTAACTGTAATAGCATCAGGTTCTAA

Protein sequence

>Msa0634270

MASMRVAFLAAIMCMVVVTAPMAEAAVTCGQVVGFLTPCITYLQGGAGPSAACCGGVRRLNGAANNGPARKTACNCLKSAAGSIARLNNNQAAALPGKCGVNIPYKFSTSTNCNSIRF*