Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367410 | XP_003604031.1 | 91.346 | 312 | 13 | 2 | 1 | 312 | 1 | 298 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367410 | G7J8H3 | 91.346 | 312 | 13 | 2 | 1 | 312 | 1 | 298 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1367410 | 0.817833 | 2.686101e-52 | -8.615850e-47 |
| Msa0017120 | Msa1367410 | 0.834274 | 3.295266e-56 | -8.615850e-47 |
| Msa0018220 | Msa1367410 | 0.800788 | 1.222863e-48 | -8.615850e-47 |
| Msa0043680 | Msa1367410 | 0.811838 | 5.729671e-51 | -8.615850e-47 |
| Msa0043940 | Msa1367410 | 0.803568 | 3.275812e-49 | -8.615850e-47 |
| Msa0065390 | Msa1367410 | 0.820038 | 8.468758e-53 | -8.615850e-47 |
| Msa0077410 | Msa1367410 | 0.852256 | 5.202783e-61 | -8.615850e-47 |
| Msa0092660 | Msa1367410 | 0.815459 | 9.145738e-52 | -8.615850e-47 |
| Msa0092730 | Msa1367410 | 0.820490 | 6.673550e-53 | -8.615850e-47 |
| Msa0094420 | Msa1367410 | 0.803247 | 3.818994e-49 | -8.615850e-47 |
| Msa0097050 | Msa1367410 | 0.801215 | 1.000085e-48 | -8.615850e-47 |
| Msa0103780 | Msa1367410 | 0.816047 | 6.763618e-52 | -8.615850e-47 |
| Msa0110710 | Msa1367410 | 0.823933 | 1.060534e-53 | -8.615850e-47 |
| Msa1350670 | Msa1367410 | 0.842569 | 2.387656e-58 | -8.615850e-47 |
| Msa1354040 | Msa1367410 | 0.806199 | 9.235559e-50 | -8.615850e-47 |
| Msa1355400 | Msa1367410 | 0.843751 | 1.155359e-58 | -8.615850e-47 |
| Msa1365020 | Msa1367410 | 0.901411 | 2.753144e-78 | -8.615850e-47 |
| Msa1367410 | Msa1382720 | 0.810540 | 1.095727e-50 | -8.615850e-47 |
| Msa1367410 | Msa1405770 | 0.816651 | 4.954223e-52 | -8.615850e-47 |
| Msa1367410 | Msa1417650 | 0.972688 | 3.557602e-135 | -8.615850e-47 |
| Msa1367410 | Msa1421810 | 0.836113 | 1.132005e-56 | -8.615850e-47 |
| Msa1367410 | Msa1425060 | 0.834581 | 2.759379e-56 | -8.615850e-47 |
| Msa1367410 | Msa1434020 | 0.877091 | 8.294571e-69 | -8.615850e-47 |
| Msa1367410 | Msa1435040 | 0.823334 | 1.464655e-53 | -8.615850e-47 |
| Msa1367410 | Msa1435050 | 0.855628 | 5.551476e-62 | -8.615850e-47 |
| Msa1367410 | Msa1437150 | 0.811154 | 8.067095e-51 | -8.615850e-47 |
| Msa1367410 | Msa1439670 | 0.860322 | 2.238978e-63 | -8.615850e-47 |
| Msa1367410 | Msa1439680 | 0.864088 | 1.562982e-64 | -8.615850e-47 |
| Msa1367410 | Msa1444450 | 0.815356 | 9.643315e-52 | -8.615850e-47 |
| Msa1367410 | Msa1455660 | 0.801712 | 7.909821e-49 | -8.615850e-47 |
| Msa0607480 | Msa1367410 | 0.803618 | 3.199508e-49 | -8.615850e-47 |
| Msa0619330 | Msa1367410 | 0.816399 | 5.642568e-52 | -8.615850e-47 |
| Msa0621770 | Msa1367410 | 0.814573 | 1.437953e-51 | -8.615850e-47 |
| Msa0633750 | Msa1367410 | 0.838551 | 2.688260e-57 | -8.615850e-47 |
| Msa0634270 | Msa1367410 | 0.834263 | 3.315375e-56 | -8.615850e-47 |
| Msa0640390 | Msa1367410 | 0.847612 | 1.035761e-59 | -8.615850e-47 |
| Msa0640880 | Msa1367410 | 0.835968 | 1.232013e-56 | -8.615850e-47 |
| Msa0640990 | Msa1367410 | 0.800770 | 1.233233e-48 | -8.615850e-47 |
| Msa0641620 | Msa1367410 | 0.846966 | 1.557978e-59 | -8.615850e-47 |
| Msa0642910 | Msa1367410 | 0.852084 | 5.822616e-61 | -8.615850e-47 |
| Msa0665910 | Msa1367410 | -0.833429 | 5.361900e-56 | -8.615850e-47 |
| Msa0667970 | Msa1367410 | 0.806210 | 9.186773e-50 | -8.615850e-47 |
| Msa0672110 | Msa1367410 | 0.801564 | 8.485581e-49 | -8.615850e-47 |
| Msa0678890 | Msa1367410 | 0.867284 | 1.532926e-65 | -8.615850e-47 |
| Msa0680150 | Msa1367410 | 0.813939 | 1.985760e-51 | -8.615850e-47 |
| Msa0681890 | Msa1367410 | 0.829022 | 6.493568e-55 | -8.615850e-47 |
| Msa0691160 | Msa1367410 | 0.804584 | 2.014197e-49 | -8.615850e-47 |
| Msa0700910 | Msa1367410 | 0.822592 | 2.181419e-53 | -8.615850e-47 |
| Msa0703720 | Msa1367410 | 0.803496 | 3.390724e-49 | -8.615850e-47 |
| Msa0703760 | Msa1367410 | 0.813421 | 2.581970e-51 | -8.615850e-47 |
| Msa0720270 | Msa1367410 | 0.835760 | 1.391333e-56 | -8.615850e-47 |
| Msa0722940 | Msa1367410 | 0.867216 | 1.611761e-65 | -8.615850e-47 |
| Msa0723150 | Msa1367410 | 0.874757 | 5.259991e-68 | -8.615850e-47 |
| Msa0730180 | Msa1367410 | 0.803534 | 3.330514e-49 | -8.615850e-47 |
| Msa0738870 | Msa1367410 | 0.815802 | 7.668839e-52 | -8.615850e-47 |
| Msa0738880 | Msa1367410 | 0.800593 | 1.340183e-48 | -8.615850e-47 |
| Msa0738970 | Msa1367410 | 0.809889 | 1.514027e-50 | -8.615850e-47 |
| Msa0760840 | Msa1367410 | 0.801238 | 9.896252e-49 | -8.615850e-47 |
| Msa0799210 | Msa1367410 | 0.826141 | 3.193267e-54 | -8.615850e-47 |
| Msa0802500 | Msa1367410 | 0.814937 | 1.194231e-51 | -8.615850e-47 |
| Msa0803130 | Msa1367410 | 0.862203 | 5.985355e-64 | -8.615850e-47 |
| Msa0804110 | Msa1367410 | 0.804199 | 2.422790e-49 | -8.615850e-47 |
| Msa0819470 | Msa1367410 | 0.811641 | 6.323378e-51 | -8.615850e-47 |
| Msa0841490 | Msa1367410 | 0.863353 | 2.645398e-64 | -8.615850e-47 |
| Msa0125280 | Msa1367410 | 0.818299 | 2.107752e-52 | -8.615850e-47 |
| Msa0135980 | Msa1367410 | 0.812948 | 3.278012e-51 | -8.615850e-47 |
| Msa0137600 | Msa1367410 | 0.814339 | 1.620604e-51 | -8.615850e-47 |
| Msa0139900 | Msa1367410 | 0.824398 | 8.249787e-54 | -8.615850e-47 |
| Msa0141670 | Msa1367410 | 0.818966 | 1.487378e-52 | -8.615850e-47 |
| Msa0143970 | Msa1367410 | 0.811415 | 7.082448e-51 | -8.615850e-47 |
| Msa0146470 | Msa1367410 | 0.808402 | 3.152372e-50 | -8.615850e-47 |
| Msa0150210 | Msa1367410 | 0.812555 | 3.996883e-51 | -8.615850e-47 |
| Msa0157020 | Msa1367410 | 0.835795 | 1.362840e-56 | -8.615850e-47 |
| Msa0170040 | Msa1367410 | 0.804806 | 1.810042e-49 | -8.615850e-47 |
| Msa0206120 | Msa1367410 | 0.807450 | 5.025799e-50 | -8.615850e-47 |
| Msa0207180 | Msa1367410 | 0.840608 | 7.846729e-58 | -8.615850e-47 |
| Msa0230400 | Msa1367410 | 0.837504 | 5.000195e-57 | -8.615850e-47 |
| Msa1232860 | Msa1367410 | 0.828786 | 7.405775e-55 | -8.615850e-47 |
| Msa1237930 | Msa1367410 | 0.806451 | 8.174943e-50 | -8.615850e-47 |
| Msa1241680 | Msa1367410 | 0.800712 | 1.267014e-48 | -8.615850e-47 |
| Msa1258810 | Msa1367410 | 0.855549 | 5.857512e-62 | -8.615850e-47 |
| Msa1271510 | Msa1367410 | 0.808023 | 3.796617e-50 | -8.615850e-47 |
| Msa1302150 | Msa1367410 | 0.820210 | 7.737750e-53 | -8.615850e-47 |
| Msa1308950 | Msa1367410 | 0.817759 | 2.790991e-52 | -8.615850e-47 |
| Msa1313460 | Msa1367410 | 0.815004 | 1.154527e-51 | -8.615850e-47 |
| Msa1330240 | Msa1367410 | 0.828320 | 9.599847e-55 | -8.615850e-47 |
| Msa0370600 | Msa1367410 | 0.843236 | 1.586229e-58 | -8.615850e-47 |
| Msa0378340 | Msa1367410 | 0.806024 | 1.005404e-49 | -8.615850e-47 |
| Msa0380060 | Msa1367410 | 0.836238 | 1.052277e-56 | -8.615850e-47 |
| Msa0382290 | Msa1367410 | 0.853646 | 2.082748e-61 | -8.615850e-47 |
| Msa0392410 | Msa1367410 | 0.802739 | 4.863114e-49 | -8.615850e-47 |
| Msa0392450 | Msa1367410 | 0.809899 | 1.505910e-50 | -8.615850e-47 |
| Msa0398590 | Msa1367410 | 0.834277 | 3.289364e-56 | -8.615850e-47 |
| Msa0408640 | Msa1367410 | 0.867885 | 9.840965e-66 | -8.615850e-47 |
| Msa0417630 | Msa1367410 | 0.818745 | 1.669892e-52 | -8.615850e-47 |
| Msa0418200 | Msa1367410 | 0.836530 | 8.866018e-57 | -8.615850e-47 |
| Msa0418480 | Msa1367410 | 0.833610 | 4.830619e-56 | -8.615850e-47 |
| Msa0421790 | Msa1367410 | 0.818407 | 1.991983e-52 | -8.615850e-47 |
| Msa0427690 | Msa1367410 | 0.804798 | 1.817269e-49 | -8.615850e-47 |
| Msa0429270 | Msa1367410 | 0.847690 | 9.860813e-60 | -8.615850e-47 |
| Msa0431800 | Msa1367410 | 0.849109 | 3.992636e-60 | -8.615850e-47 |
| Msa0457870 | Msa1367410 | 0.844170 | 8.922237e-59 | -8.615850e-47 |
| Msa0464540 | Msa1367410 | 0.837892 | 3.974768e-57 | -8.615850e-47 |
| Msa0465860 | Msa1367410 | 0.820596 | 6.310038e-53 | -8.615850e-47 |
| Msa0988030 | Msa1367410 | 0.822984 | 1.767766e-53 | -8.615850e-47 |
| Msa0990520 | Msa1367410 | 0.802684 | 4.992416e-49 | -8.615850e-47 |
| Msa0992570 | Msa1367410 | 0.811324 | 7.409929e-51 | -8.615850e-47 |
| Msa0992590 | Msa1367410 | 0.800906 | 1.156551e-48 | -8.615850e-47 |
| Msa1002040 | Msa1367410 | 0.810064 | 1.387683e-50 | -8.615850e-47 |
| Msa1004500 | Msa1367410 | 0.820810 | 5.635191e-53 | -8.615850e-47 |
| Msa1004520 | Msa1367410 | 0.818102 | 2.335303e-52 | -8.615850e-47 |
| Msa1009670 | Msa1367410 | 0.810143 | 1.334326e-50 | -8.615850e-47 |
| Msa1014270 | Msa1367410 | 0.833796 | 4.340171e-56 | -8.615850e-47 |
| Msa1022650 | Msa1367410 | 0.816705 | 4.819507e-52 | -8.615850e-47 |
| Msa1027790 | Msa1367410 | 0.832865 | 7.408286e-56 | -8.615850e-47 |
| Msa1046870 | Msa1367410 | 0.818506 | 1.891461e-52 | -8.615850e-47 |
| Msa1055260 | Msa1367410 | 0.804995 | 1.652761e-49 | -8.615850e-47 |
| Msa1061180 | Msa1367410 | 0.808613 | 2.842081e-50 | -8.615850e-47 |
| Msa1061500 | Msa1367410 | 0.808062 | 3.724013e-50 | -8.615850e-47 |
| Msa1097850 | Msa1367410 | 0.802170 | 6.371466e-49 | -8.615850e-47 |
| Msa1106560 | Msa1367410 | 0.817390 | 3.381511e-52 | -8.615850e-47 |
| Msa1106580 | Msa1367410 | 0.800313 | 1.528297e-48 | -8.615850e-47 |
| Msa1106810 | Msa1367410 | 0.812967 | 3.247197e-51 | -8.615850e-47 |
| Msa0249270 | Msa1367410 | 0.824112 | 9.630467e-54 | -8.615850e-47 |
| Msa0257130 | Msa1367410 | 0.804835 | 1.785106e-49 | -8.615850e-47 |
| Msa0262100 | Msa1367410 | 0.815585 | 8.572779e-52 | -8.615850e-47 |
| Msa0274780 | Msa1367410 | 0.841030 | 6.083976e-58 | -8.615850e-47 |
| Msa0277530 | Msa1367410 | 0.812537 | 4.034408e-51 | -8.615850e-47 |
| Msa0315480 | Msa1367410 | 0.849922 | 2.369099e-60 | -8.615850e-47 |
| Msa0331780 | Msa1367410 | 0.812155 | 4.888769e-51 | -8.615850e-47 |
| Msa0344580 | Msa1367410 | 0.814070 | 1.857929e-51 | -8.615850e-47 |
| Msa0351510 | Msa1367410 | 0.817746 | 2.810663e-52 | -8.615850e-47 |
| Msa0358230 | Msa1367410 | 0.808025 | 3.793499e-50 | -8.615850e-47 |
| Msa0361250 | Msa1367410 | 0.857450 | 1.618456e-62 | -8.615850e-47 |
| Msa0361260 | Msa1367410 | 0.865013 | 8.030811e-65 | -8.615850e-47 |
| Msa1112610 | Msa1367410 | 0.834734 | 2.525617e-56 | -8.615850e-47 |
| Msa1130690 | Msa1367410 | 0.819782 | 9.693630e-53 | -8.615850e-47 |
| Msa1131020 | Msa1367410 | 0.815490 | 9.001337e-52 | -8.615850e-47 |
| Msa1134400 | Msa1367410 | 0.804201 | 2.419640e-49 | -8.615850e-47 |
| Msa1171340 | Msa1367410 | 0.800145 | 1.653155e-48 | -8.615850e-47 |
| Msa1183390 | Msa1367410 | 0.807454 | 5.014918e-50 | -8.615850e-47 |
| Msa1197110 | Msa1367410 | 0.811973 | 5.354161e-51 | -8.615850e-47 |
| Msa1200920 | Msa1367410 | 0.849748 | 2.649678e-60 | -8.615850e-47 |
| Msa1208510 | Msa1367410 | 0.802791 | 4.743622e-49 | -8.615850e-47 |
| Msa1214870 | Msa1367410 | 0.801128 | 1.042036e-48 | -8.615850e-47 |
| Msa1215210 | Msa1367410 | 0.810979 | 8.806188e-51 | -8.615850e-47 |
| Msa1219250 | Msa1367410 | 0.816139 | 6.451530e-52 | -8.615850e-47 |
| Msa1223840 | Msa1367410 | 0.805190 | 1.504505e-49 | -8.615850e-47 |
| Msa0487560 | Msa1367410 | 0.822406 | 2.410322e-53 | -8.615850e-47 |
| Msa0487620 | Msa1367410 | 0.829539 | 4.865986e-55 | -8.615850e-47 |
| Msa0510230 | Msa1367410 | 0.837503 | 5.001456e-57 | -8.615850e-47 |
| Msa0518520 | Msa1367410 | 0.805869 | 1.083668e-49 | -8.615850e-47 |
| Msa0519200 | Msa1367410 | 0.847678 | 9.934946e-60 | -8.615850e-47 |
| Msa0520730 | Msa1367410 | 0.825430 | 4.707186e-54 | -8.615850e-47 |
| Msa0524210 | Msa1367410 | 0.976624 | 3.500080e-142 | -8.615850e-47 |
| Msa0528940 | Msa1367410 | 0.823151 | 1.616548e-53 | -8.615850e-47 |
| Msa0532840 | Msa1367410 | 0.803740 | 3.017225e-49 | -8.615850e-47 |
| Msa0533010 | Msa1367410 | 0.802924 | 4.453249e-49 | -8.615850e-47 |
| Msa0537270 | Msa1367410 | 0.871540 | 6.323571e-67 | -8.615850e-47 |
| Msa0538570 | Msa1367410 | 0.843612 | 1.258667e-58 | -8.615850e-47 |
| Msa0543850 | Msa1367410 | 0.841483 | 4.622559e-58 | -8.615850e-47 |
| Msa0547050 | Msa1367410 | 0.877558 | 5.707452e-69 | -8.615850e-47 |
| Msa0593710 | Msa1367410 | 0.867653 | 1.167415e-65 | -8.615850e-47 |
| Msa0594180 | Msa1367410 | 0.804212 | 2.407018e-49 | -8.615850e-47 |
| Msa0594390 | Msa1367410 | 0.842005 | 3.366069e-58 | -8.615850e-47 |
| Msa0599690 | Msa1367410 | 0.819552 | 1.093902e-52 | -8.615850e-47 |
| Msa0600390 | Msa1367410 | 0.827200 | 1.783749e-54 | -8.615850e-47 |
| Msa0601110 | Msa1367410 | 0.856257 | 3.634543e-62 | -8.615850e-47 |
| Msa0601120 | Msa1367410 | 0.854659 | 1.062434e-61 | -8.615850e-47 |
| Msa0601780 | Msa1367410 | 0.853367 | 2.504566e-61 | -8.615850e-47 |
| Msa0843290 | Msa1367410 | 0.845588 | 3.698412e-59 | -8.615850e-47 |
| Msa0859390 | Msa1367410 | 0.809380 | 1.946905e-50 | -8.615850e-47 |
| Msa0872310 | Msa1367410 | 0.804772 | 1.839753e-49 | -8.615850e-47 |
| Msa0873190 | Msa1367410 | 0.804404 | 2.196173e-49 | -8.615850e-47 |
| Msa0877420 | Msa1367410 | 0.827435 | 1.567362e-54 | -8.615850e-47 |
| Msa0886880 | Msa1367410 | 0.844978 | 5.408932e-59 | -8.615850e-47 |
| Msa0930330 | Msa1367410 | 0.816656 | 4.942769e-52 | -8.615850e-47 |
| Msa0931480 | Msa1367410 | 0.848342 | 6.513555e-60 | -8.615850e-47 |
| Msa0937550 | Msa1367410 | 0.807249 | 5.541869e-50 | -8.615850e-47 |
| Msa0951460 | Msa1367410 | 0.858458 | 8.126172e-63 | -8.615850e-47 |
| Msa0951960 | Msa1367410 | 0.844621 | 6.750122e-59 | -8.615850e-47 |
| Msa0955260 | Msa1367410 | 0.803678 | 3.108841e-49 | -8.615850e-47 |
| Msa0955300 | Msa1367410 | 0.809665 | 1.690832e-50 | -8.615850e-47 |
| Msa0958020 | Msa1367410 | 0.822800 | 1.951525e-53 | -8.615850e-47 |
| Msa0974750 | Msa1367410 | 0.822629 | 2.138301e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367410 | MtrunA17_Chr3g0145511 | 91.346 | 312 | 13 | 2 | 1 | 312 | 1 | 298 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367410 | AT2G16630.1 | 46.067 | 356 | 137 | 6 | 7 | 312 | 9 | 359 | 7.12e-100 | 298 |
Find 97 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATCTCCTCTCCCTTTC+AGG | 0.175349 | tig0018513:-89655 | None:intergenic |
| GGTGCCAATGTTGGTGGTGG+TGG | 0.190043 | tig0018513:-88690 | None:intergenic |
| ATGGTGGAAGTTGTGGCATT+GGG | 0.241279 | tig0018513:-88749 | None:intergenic |
| GATGGACATGCTGAAGCTTC+TGG | 0.264920 | tig0018513:-88789 | None:intergenic |
| AACATTCTAGCATGCATGTT+TGG | 0.282010 | tig0018513:-89990 | None:intergenic |
| AATGTTGGTGGTGGTGGGGA+TGG | 0.300659 | tig0018513:-88684 | None:intergenic |
| ACAAAAGTAGCTGTAGCTTT+TGG | 0.304044 | tig0018513:+89584 | Msa1367410:CDS |
| ATTCTTTCAGTGACCATTGA+TGG | 0.310469 | tig0018513:+87005 | Msa1367410:CDS |
| CATTTCATGAGGGCTAATTC+TGG | 0.314423 | tig0018513:+89821 | Msa1367410:CDS |
| AAGGGAGAGGAGATCCTTAC+AGG | 0.324413 | tig0018513:+89660 | Msa1367410:CDS |
| TTCTCATTGCATTTGCCAAC+TGG | 0.329560 | tig0018513:+86927 | Msa1367410:five_prime_UTR |
| ACACATGAATTATGCTTTGA+TGG | 0.330439 | tig0018513:+89766 | Msa1367410:CDS |
| CAAGAGAAGAAACAACAAAT+TGG | 0.341479 | tig0018513:+88430 | Msa1367410:CDS |
| GTGCCAATGTTGGTGGTGGT+GGG | 0.345243 | tig0018513:-88689 | None:intergenic |
| CTCCAATAGCATTCATATTC+CGG | 0.351920 | tig0018513:-89545 | None:intergenic |
| AAAATCCAAGACTCATGTTT+AGG | 0.352973 | tig0018513:+88577 | Msa1367410:CDS |
| TCTAACATTCATGGAGTTGC+CGG | 0.354500 | tig0018513:+86956 | Msa1367410:exon |
| ACATTCTAGCATGCATGTTT+GGG | 0.367325 | tig0018513:-89989 | None:intergenic |
| ATGTTGGTGGTGGTGGGGAT+GGG | 0.374966 | tig0018513:-88683 | None:intergenic |
| GAAGAAACAACAAATTGGTT+TGG | 0.375618 | tig0018513:+88435 | Msa1367410:CDS |
| TTGGCAAATGCAATGAGAAA+TGG | 0.378536 | tig0018513:-86923 | None:intergenic |
| TGGACTTCTTCTAACATTCA+TGG | 0.382090 | tig0018513:+86947 | Msa1367410:exon |
| CAAGTGGATGGTAAGAGAAT+TGG | 0.385574 | tig0018513:-89733 | None:intergenic |
| AATGGTGGAAGTTGTGGCAT+TGG | 0.390842 | tig0018513:-88750 | None:intergenic |
| AGTTAGATCTCACCATTAAC+AGG | 0.396284 | tig0018513:-87107 | None:intergenic |
| ATCTGCCTTTGTTCCATCAA+TGG | 0.404798 | tig0018513:-87018 | None:intergenic |
| TGCCGGAATATGAATGCTAT+TGG | 0.408426 | tig0018513:+89543 | Msa1367410:CDS |
| CATGTCTCGGGAAATAATAA+TGG | 0.419703 | tig0018513:+88510 | Msa1367410:CDS |
| ATGGTTGCAGCAAGGAAATA+TGG | 0.433099 | tig0018513:+89608 | Msa1367410:CDS |
| AGCTATACAATGAGGTTTGA+TGG | 0.433754 | tig0018513:+88459 | Msa1367410:CDS |
| TTCCCAAACATACTAGGAAA+AGG | 0.435076 | tig0018513:-89907 | None:intergenic |
| TGGTGGTGGTGGGGATGGGT+TGG | 0.440191 | tig0018513:-88679 | None:intergenic |
| ATGTGGAGGAGGAGAAGAAA+TGG | 0.446281 | tig0018513:-88715 | None:intergenic |
| TGGCAAATGCAATGAGAAAT+GGG | 0.458534 | tig0018513:-86922 | None:intergenic |
| AATCATTTCCCAAACATACT+AGG | 0.462481 | tig0018513:-89913 | None:intergenic |
| TGCCAATGTTGGTGGTGGTG+GGG | 0.465868 | tig0018513:-88688 | None:intergenic |
| TGGTTGTTCTGCACATGTCT+CGG | 0.469204 | tig0018513:+88497 | Msa1367410:CDS |
| TTTGATGGAGCACCAGACTT+AGG | 0.482264 | tig0018513:+88474 | Msa1367410:CDS |
| ATGAGGGCTAATTCTGGTGC+TGG | 0.483178 | tig0018513:+89827 | Msa1367410:CDS |
| TGCTTTGATGGGCTCAACTA+GGG | 0.485464 | tig0018513:+89778 | Msa1367410:CDS |
| CAGTATTGCATAGGTTGAGC+AGG | 0.486574 | tig0018513:-88645 | None:intergenic |
| AACATCCTAAACATGAGTCT+TGG | 0.489630 | tig0018513:-88582 | None:intergenic |
| GGTTGTTCTGCACATGTCTC+GGG | 0.491091 | tig0018513:+88498 | Msa1367410:CDS |
| TGGTGGAAGTTGTGGCATTG+GGG | 0.492351 | tig0018513:-88748 | None:intergenic |
| CACATGAATTATGCTTTGAT+GGG | 0.492608 | tig0018513:+89767 | Msa1367410:CDS |
| GGTGGTGCCAATGTTGGTGG+TGG | 0.493754 | tig0018513:-88693 | None:intergenic |
| TGTGGAGGAGGAGAAGAAAT+GGG | 0.494289 | tig0018513:-88714 | None:intergenic |
| ATGCTTTGATGGGCTCAACT+AGG | 0.495913 | tig0018513:+89777 | Msa1367410:CDS |
| GTTGCAAACAAAAGCTTCTC+CGG | 0.497432 | tig0018513:-86975 | None:intergenic |
| ATCCCCACCACCACCAACAT+TGG | 0.499035 | tig0018513:+88686 | Msa1367410:CDS |
| TCCCAAACATACTAGGAAAA+GGG | 0.503376 | tig0018513:-89906 | None:intergenic |
| GCACCTTCACCACAACTCAT+TGG | 0.503873 | tig0018513:-88543 | None:intergenic |
| TGTCATGTAGTGACAACAAT+GGG | 0.513625 | tig0018513:+88394 | Msa1367410:CDS |
| CATGTTTAGGATGTTTGACA+TGG | 0.532543 | tig0018513:+88590 | Msa1367410:CDS |
| TCTCTCAAAAGAGTCCTGTA+AGG | 0.534067 | tig0018513:-89674 | None:intergenic |
| GCAGAACAACCACCTAAGTC+TGG | 0.541167 | tig0018513:-88486 | None:intergenic |
| CAATTCTCTTACCATCCACT+TGG | 0.543024 | tig0018513:+89734 | Msa1367410:CDS |
| CGGAATATGAATGCTATTGG+AGG | 0.544236 | tig0018513:+89546 | Msa1367410:CDS |
| CAGTGATAAACTTACTGTGA+TGG | 0.555843 | tig0018513:-88807 | None:intergenic |
| TTACTGCTTATCATTTCATG+AGG | 0.557628 | tig0018513:+89810 | Msa1367410:CDS |
| TAGGTTGAGCAGGCTGAGCA+AGG | 0.559848 | tig0018513:-88635 | None:intergenic |
| ATGAGTTGTGGTGAAGGTGC+TGG | 0.561315 | tig0018513:+88546 | Msa1367410:CDS |
| TGATAGGAAGTGGACAATGC+CGG | 0.564202 | tig0018513:+89526 | Msa1367410:intron |
| ATGGGTGGTGCCAATGTTGG+TGG | 0.567999 | tig0018513:-88696 | None:intergenic |
| GATGTTGAGCAGTATTGCAT+AGG | 0.569435 | tig0018513:-88654 | None:intergenic |
| AAAATCATTGGTGGTAATGG+TGG | 0.570401 | tig0018513:-88765 | None:intergenic |
| GGTGGAAGTTGTGGCATTGG+GGG | 0.571199 | tig0018513:-88747 | None:intergenic |
| TTTGTGATCAATGCAAAGAC+GGG | 0.581900 | tig0018513:+87063 | Msa1367410:CDS |
| GGTAGGTTGAAATGTGGAGG+AGG | 0.582342 | tig0018513:-88726 | None:intergenic |
| GGTGGTAATGGTGGAAGTTG+TGG | 0.582776 | tig0018513:-88756 | None:intergenic |
| ACATTGTGGTATGGCCTGAA+AGG | 0.589527 | tig0018513:+89641 | Msa1367410:CDS |
| TGGTATGGCCTGAAAGGGAG+AGG | 0.589868 | tig0018513:+89647 | Msa1367410:CDS |
| TACTGCTTATCATTTCATGA+GGG | 0.598834 | tig0018513:+89811 | Msa1367410:CDS |
| ATTTGTGATCAATGCAAAGA+CGG | 0.604556 | tig0018513:+87062 | Msa1367410:CDS |
| TGAGCAGGCTGAGCAAGGAG+TGG | 0.605851 | tig0018513:-88630 | None:intergenic |
| GAAATGGGTGGTGCCAATGT+TGG | 0.606306 | tig0018513:-88699 | None:intergenic |
| AATGTTAGAAGAAGTCCAGT+TGG | 0.611637 | tig0018513:-86942 | None:intergenic |
| GATGGAGCACCAGACTTAGG+TGG | 0.611734 | tig0018513:+88477 | Msa1367410:CDS |
| CATTGTGGTATGGCCTGAAA+GGG | 0.612379 | tig0018513:+89642 | Msa1367410:CDS |
| GGACCAATGAGTTGTGGTGA+AGG | 0.613433 | tig0018513:+88540 | Msa1367410:CDS |
| GGTTTGGAAGCTATACAATG+AGG | 0.622859 | tig0018513:+88451 | Msa1367410:CDS |
| AGTGACCATTGATGGAACAA+AGG | 0.626914 | tig0018513:+87013 | Msa1367410:CDS |
| GAATATGAATGCTATTGGAG+GGG | 0.629266 | tig0018513:+89548 | Msa1367410:CDS |
| GGAAATAATAATGGACAAGG+AGG | 0.636968 | tig0018513:+88519 | Msa1367410:CDS |
| CTGTCATGTAGTGACAACAA+TGG | 0.641151 | tig0018513:+88393 | Msa1367410:CDS |
| TCGGGAAATAATAATGGACA+AGG | 0.644592 | tig0018513:+88516 | Msa1367410:CDS |
| AAGGCAGATACTATGCTCAC+CGG | 0.644788 | tig0018513:+87032 | Msa1367410:CDS |
| TTGATCACAAATGACAGTGC+CGG | 0.647531 | tig0018513:-87051 | None:intergenic |
| ACAGACATGACATTGTGGTA+TGG | 0.658654 | tig0018513:+89632 | Msa1367410:CDS |
| GGAATATGAATGCTATTGGA+GGG | 0.672296 | tig0018513:+89547 | Msa1367410:CDS |
| CAAGGAGGACCAATGAGTTG+TGG | 0.682632 | tig0018513:+88534 | Msa1367410:CDS |
| ATGTGTGTGACTACACCAAG+TGG | 0.706120 | tig0018513:-89749 | None:intergenic |
| GGAGGAGGAGAAGAAATGGG+TGG | 0.708291 | tig0018513:-88711 | None:intergenic |
| GTGTGACTACACCAAGTGGA+TGG | 0.711817 | tig0018513:-89745 | None:intergenic |
| TGACATGGAGATGTATGCTG+TGG | 0.712430 | tig0018513:+88605 | Msa1367410:CDS |
| TGAAATGATAAGCAGTAACG+AGG | 0.716584 | tig0018513:-89805 | None:intergenic |
| ATGGTACAGACATGACATTG+TGG | 0.735250 | tig0018513:+89627 | Msa1367410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATAAATACAATTAATT+TGG | + | tig0018513:88290-88309 | Msa1367410:intron | 10.0% |
| !! | TCTTTAAACTTATTATTATT+TGG | - | tig0018513:89191-89210 | None:intergenic | 10.0% |
| !!! | TATTTTCAACTAATTTTTTT+TGG | - | tig0018513:89248-89267 | None:intergenic | 10.0% |
| !! | TTGTAAATTATTATTATAAC+CGG | + | tig0018513:89432-89451 | Msa1367410:intron | 10.0% |
| !!! | CTTTTAGTTTTTTTTCTTTT+TGG | - | tig0018513:87433-87452 | None:intergenic | 15.0% |
| !! | TTTCAAATAAAAACTCATAA+TGG | - | tig0018513:87679-87698 | None:intergenic | 15.0% |
| !!! | TATGAGTTTTTATTTGAAAT+AGG | + | tig0018513:87680-87699 | Msa1367410:intron | 15.0% |
| !!! | AAGGTTTTTTTTTTCTTTTA+CGG | - | tig0018513:88088-88107 | None:intergenic | 15.0% |
| !! | TGAAATCTTATTATCATTAA+TGG | - | tig0018513:88849-88868 | None:intergenic | 15.0% |
| !! | TGTAAAATTACTAAAAGAAA+TGG | + | tig0018513:88976-88995 | Msa1367410:intron | 15.0% |
| !!! | TACTCAAAAAATGTATTTTT+AGG | - | tig0018513:89166-89185 | None:intergenic | 15.0% |
| !! | AATAATAAGTTTAAAGACTT+TGG | + | tig0018513:89194-89213 | Msa1367410:intron | 15.0% |
| !!! | AAATGGTTATTATGTGTTTT+TGG | - | tig0018513:87234-87253 | None:intergenic | 20.0% |
| !!! | ACAATTTAGTTTTTTCAATG+CGG | + | tig0018513:87575-87594 | Msa1367410:intron | 20.0% |
| !!! | AATGTTAACCTGTATTTTTA+AGG | + | tig0018513:87705-87724 | Msa1367410:intron | 20.0% |
| !! | TTAAATGCACAAAATTTAAG+AGG | + | tig0018513:87801-87820 | Msa1367410:intron | 20.0% |
| !!! | TAAGAGGATGTTTTTATTTT+TGG | + | tig0018513:87817-87836 | Msa1367410:intron | 20.0% |
| !!! | AAGAGGATGTTTTTATTTTT+GGG | + | tig0018513:87818-87837 | Msa1367410:intron | 20.0% |
| !! | AAATAAGCAAAATAAGCATT+GGG | + | tig0018513:87886-87905 | Msa1367410:intron | 20.0% |
| !!! | ATATGTTTTTAATTGTGACA+TGG | + | tig0018513:87918-87937 | Msa1367410:intron | 20.0% |
| !!! | AAATTGTACTATTTGTTAAG+TGG | - | tig0018513:87955-87974 | None:intergenic | 20.0% |
| !! | TCAGTTCTATATTAGTAATT+AGG | + | tig0018513:87987-88006 | Msa1367410:intron | 20.0% |
| !!! | GTTTTGAAAATAGTAGAATA+TGG | + | tig0018513:89077-89096 | Msa1367410:intron | 20.0% |
| !!! | GGTAAAAATTTGAGTTTAAA+AGG | + | tig0018513:89215-89234 | Msa1367410:intron | 20.0% |
| !!! | TGTAAAGTATTTGATTTGAT+AGG | + | tig0018513:89510-89529 | Msa1367410:intron | 20.0% |
| ! | AAATGTATGGTACTAATAGA+TGG | - | tig0018513:87182-87201 | None:intergenic | 25.0% |
| ! | TGAGTTTATGAACTATCTTA+CGG | - | tig0018513:87516-87535 | None:intergenic | 25.0% |
| !! | TAATGGTTCCATTTAGTTTA+TGG | + | tig0018513:87610-87629 | Msa1367410:intron | 25.0% |
| ! | TTTCCTTTCCATAAACTAAA+TGG | - | tig0018513:87621-87640 | None:intergenic | 25.0% |
| ! | GAAATAAGCAAAATAAGCAT+TGG | + | tig0018513:87885-87904 | Msa1367410:intron | 25.0% |
| !!! | ACTAATATAGAACTGACTTT+TGG | - | tig0018513:87983-88002 | None:intergenic | 25.0% |
| ! | GTCAATAAAATCTATGACAT+AGG | - | tig0018513:88345-88364 | None:intergenic | 25.0% |
| ! | TTATTGACCAAATTTAATGC+AGG | + | tig0018513:88357-88376 | Msa1367410:intron | 25.0% |
| !! | ATACTATTTTCACTAAGAGT+CGG | + | tig0018513:88883-88902 | Msa1367410:intron | 25.0% |
| !! | AAATTTGAGTTTAAAAGGCT+AGG | + | tig0018513:89220-89239 | Msa1367410:intron | 25.0% |
| ! | ATGAAAGATGAATACATATC+CGG | - | tig0018513:89454-89473 | None:intergenic | 25.0% |
| ATTTGTGATCAATGCAAAGA+CGG | + | tig0018513:87062-87081 | Msa1367410:CDS | 30.0% | |
| ! | CTTTTCGATTATCCTGTTAA+TGG | + | tig0018513:87095-87114 | Msa1367410:CDS | 30.0% |
| GAGTTGAATGACAAAATGTA+TGG | - | tig0018513:87195-87214 | None:intergenic | 30.0% | |
| ATGCAGGAGAAAAACTAAAA+TGG | - | tig0018513:87251-87270 | None:intergenic | 30.0% | |
| ACTATGATAGAGGTTCAATT+TGG | - | tig0018513:87326-87345 | None:intergenic | 30.0% | |
| ATTGAACCTCTATCATAGTT+TGG | + | tig0018513:87327-87346 | Msa1367410:intron | 30.0% | |
| CAAATGGCAAGAACTATTAA+CGG | - | tig0018513:87373-87392 | None:intergenic | 30.0% | |
| GAGTTTATGAACTATCTTAC+GGG | - | tig0018513:87515-87534 | None:intergenic | 30.0% | |
| !!! | TGCGGTTCATTTTGATTTAA+TGG | + | tig0018513:87593-87612 | Msa1367410:intron | 30.0% |
| ! | GTTCCATTTAGTTTATGGAA+AGG | + | tig0018513:87615-87634 | Msa1367410:intron | 30.0% |
| AACTTGTGCCTTAAAAATAC+AGG | - | tig0018513:87716-87735 | None:intergenic | 30.0% | |
| TCAAAAAGAAGTTCAACAGT+TGG | + | tig0018513:88038-88057 | Msa1367410:intron | 30.0% | |
| ATACACAACAACAACAACAA+AGG | - | tig0018513:88107-88126 | None:intergenic | 30.0% | |
| TTTCAGCTAAGACAAAACAA+AGG | - | tig0018513:88227-88246 | None:intergenic | 30.0% | |
| ! | AATTTTTCATTGCCTCTAGT+TGG | + | tig0018513:88245-88264 | Msa1367410:intron | 30.0% |
| ! | ATTTTTCATTGCCTCTAGTT+GGG | + | tig0018513:88246-88265 | Msa1367410:intron | 30.0% |
| ! | TTTTGCACCTGCATTAAATT+TGG | - | tig0018513:88367-88386 | None:intergenic | 30.0% |
| CAAGAGAAGAAACAACAAAT+TGG | + | tig0018513:88430-88449 | Msa1367410:CDS | 30.0% | |
| GAAGAAACAACAAATTGGTT+TGG | + | tig0018513:88435-88454 | Msa1367410:CDS | 30.0% | |
| AAAATCCAAGACTCATGTTT+AGG | + | tig0018513:88577-88596 | Msa1367410:CDS | 30.0% | |
| TAGTAGAATATGGTGATCTA+TGG | + | tig0018513:89087-89106 | Msa1367410:intron | 30.0% | |
| AGTAGAATATGGTGATCTAT+GGG | + | tig0018513:89088-89107 | Msa1367410:intron | 30.0% | |
| AAAAAAGTCTAACACTGTTC+AGG | + | tig0018513:89299-89318 | Msa1367410:intron | 30.0% | |
| !! | GTATTTGATTTGATAGGAAG+TGG | + | tig0018513:89516-89535 | Msa1367410:intron | 30.0% |
| ACACATGAATTATGCTTTGA+TGG | + | tig0018513:89766-89785 | Msa1367410:CDS | 30.0% | |
| CACATGAATTATGCTTTGAT+GGG | + | tig0018513:89767-89786 | Msa1367410:CDS | 30.0% | |
| TTACTGCTTATCATTTCATG+AGG | + | tig0018513:89810-89829 | Msa1367410:CDS | 30.0% | |
| TACTGCTTATCATTTCATGA+GGG | + | tig0018513:89811-89830 | Msa1367410:CDS | 30.0% | |
| AATCATTTCCCAAACATACT+AGG | - | tig0018513:89916-89935 | None:intergenic | 30.0% | |
| TGGCAAATGCAATGAGAAAT+GGG | - | tig0018513:86925-86944 | None:intergenic | 35.0% | |
| TTGGCAAATGCAATGAGAAA+TGG | - | tig0018513:86926-86945 | None:intergenic | 35.0% | |
| AATGTTAGAAGAAGTCCAGT+TGG | - | tig0018513:86945-86964 | None:intergenic | 35.0% | |
| TGGACTTCTTCTAACATTCA+TGG | + | tig0018513:86947-86966 | Msa1367410:exon | 35.0% | |
| ATTCTTTCAGTGACCATTGA+TGG | + | tig0018513:87005-87024 | Msa1367410:CDS | 35.0% | |
| TTTGTGATCAATGCAAAGAC+GGG | + | tig0018513:87063-87082 | Msa1367410:CDS | 35.0% | |
| AGTTAGATCTCACCATTAAC+AGG | - | tig0018513:87110-87129 | None:intergenic | 35.0% | |
| ! | TTTCTCCTGCATTGATAGAT+AGG | + | tig0018513:87259-87278 | Msa1367410:intron | 35.0% |
| GATAGGACTGTAACTGTTTA+TGG | + | tig0018513:87276-87295 | Msa1367410:intron | 35.0% | |
| GACTGTAACTGTTTATGGTT+TGG | + | tig0018513:87281-87300 | Msa1367410:intron | 35.0% | |
| GATAGAGGTTCAATTTGGTT+CGG | - | tig0018513:87321-87340 | None:intergenic | 35.0% | |
| ACCTCTATCATAGTTTGGTA+TGG | + | tig0018513:87332-87351 | Msa1367410:intron | 35.0% | |
| ACCATACCAAACTATGATAG+AGG | - | tig0018513:87336-87355 | None:intergenic | 35.0% | |
| TGGAAAGGAAACATGAAAAG+TGG | + | tig0018513:87630-87649 | Msa1367410:intron | 35.0% | |
| GGAAAGGAAACATGAAAAGT+GGG | + | tig0018513:87631-87650 | Msa1367410:intron | 35.0% | |
| TTGCTTAACATGTGCCTTTA+GGG | + | tig0018513:87841-87860 | Msa1367410:intron | 35.0% | |
| TATGCTAACTTATGCCCTAA+AGG | - | tig0018513:87858-87877 | None:intergenic | 35.0% | |
| !! | TAAGCAAAATAAGCATTGGG+TGG | + | tig0018513:87889-87908 | Msa1367410:intron | 35.0% |
| !!! | TAGACTAATACTTTTTCGCC+TGG | + | tig0018513:88134-88153 | Msa1367410:intron | 35.0% |
| TCACATGTTGTGACTTTGTA+AGG | + | tig0018513:88157-88176 | Msa1367410:intron | 35.0% | |
| TGTCATGTAGTGACAACAAT+GGG | + | tig0018513:88394-88413 | Msa1367410:CDS | 35.0% | |
| AGCTATACAATGAGGTTTGA+TGG | + | tig0018513:88459-88478 | Msa1367410:CDS | 35.0% | |
| CATGTCTCGGGAAATAATAA+TGG | + | tig0018513:88510-88529 | Msa1367410:CDS | 35.0% | |
| !! | TCGGGAAATAATAATGGACA+AGG | + | tig0018513:88516-88535 | Msa1367410:CDS | 35.0% |
| !! | GGAAATAATAATGGACAAGG+AGG | + | tig0018513:88519-88538 | Msa1367410:CDS | 35.0% |
| AACATCCTAAACATGAGTCT+TGG | - | tig0018513:88585-88604 | None:intergenic | 35.0% | |
| ! | CATGTTTAGGATGTTTGACA+TGG | + | tig0018513:88590-88609 | Msa1367410:CDS | 35.0% |
| !! | AAAATCATTGGTGGTAATGG+TGG | - | tig0018513:88768-88787 | None:intergenic | 35.0% |
| ! | GGAAAAATCATTGGTGGTAA+TGG | - | tig0018513:88771-88790 | None:intergenic | 35.0% |
| ! | GAAGCTTCTGGAAAAATCAT+TGG | - | tig0018513:88780-88799 | None:intergenic | 35.0% |
| CAGTGATAAACTTACTGTGA+TGG | - | tig0018513:88810-88829 | None:intergenic | 35.0% | |
| CTCCAATAGCATTCATATTC+CGG | - | tig0018513:89548-89567 | None:intergenic | 35.0% | |
| GGAATATGAATGCTATTGGA+GGG | + | tig0018513:89547-89566 | Msa1367410:CDS | 35.0% | |
| GAATATGAATGCTATTGGAG+GGG | + | tig0018513:89548-89567 | Msa1367410:CDS | 35.0% | |
| ! | ACAAAAGTAGCTGTAGCTTT+TGG | + | tig0018513:89584-89603 | Msa1367410:CDS | 35.0% |
| TGAAATGATAAGCAGTAACG+AGG | - | tig0018513:89808-89827 | None:intergenic | 35.0% | |
| ! | TTCCCTTTTCCTAGTATGTT+TGG | + | tig0018513:89904-89923 | Msa1367410:three_prime_UTR | 35.0% |
| ! | TCCCTTTTCCTAGTATGTTT+GGG | + | tig0018513:89905-89924 | Msa1367410:three_prime_UTR | 35.0% |
| TCCCAAACATACTAGGAAAA+GGG | - | tig0018513:89909-89928 | None:intergenic | 35.0% | |
| TTCCCAAACATACTAGGAAA+AGG | - | tig0018513:89910-89929 | None:intergenic | 35.0% | |
| ACATTCTAGCATGCATGTTT+GGG | - | tig0018513:89992-90011 | None:intergenic | 35.0% | |
| AACATTCTAGCATGCATGTT+TGG | - | tig0018513:89993-90012 | None:intergenic | 35.0% | |
| TTCTCATTGCATTTGCCAAC+TGG | + | tig0018513:86927-86946 | Msa1367410:five_prime_UTR | 40.0% | |
| TCTAACATTCATGGAGTTGC+CGG | + | tig0018513:86956-86975 | Msa1367410:exon | 40.0% | |
| GTTGCAAACAAAAGCTTCTC+CGG | - | tig0018513:86978-86997 | None:intergenic | 40.0% | |
| AGTGACCATTGATGGAACAA+AGG | + | tig0018513:87013-87032 | Msa1367410:CDS | 40.0% | |
| ATCTGCCTTTGTTCCATCAA+TGG | - | tig0018513:87021-87040 | None:intergenic | 40.0% | |
| TTGATCACAAATGACAGTGC+CGG | - | tig0018513:87054-87073 | None:intergenic | 40.0% | |
| ACAGTCCTATCTATCAATGC+AGG | - | tig0018513:87267-87286 | None:intergenic | 40.0% | |
| ! | AACTGTTTATGGTTTGGCTC+AGG | + | tig0018513:87287-87306 | Msa1367410:intron | 40.0% |
| ! | ACTGTTTATGGTTTGGCTCA+GGG | + | tig0018513:87288-87307 | Msa1367410:intron | 40.0% |
| ACAAAACTCTTGCGATTGAC+CGG | - | tig0018513:87401-87420 | None:intergenic | 40.0% | |
| GTTCATAAACTCAACCAACC+TGG | + | tig0018513:87523-87542 | Msa1367410:intron | 40.0% | |
| GGAAACATGAAAAGTGGGAA+AGG | + | tig0018513:87636-87655 | Msa1367410:intron | 40.0% | |
| GTTGCTTAACATGTGCCTTT+AGG | + | tig0018513:87840-87859 | Msa1367410:intron | 40.0% | |
| ACCCTAACTAAAACAGGAGA+GGG | - | tig0018513:88202-88221 | None:intergenic | 40.0% | |
| CTGTCATGTAGTGACAACAA+TGG | + | tig0018513:88393-88412 | Msa1367410:CDS | 40.0% | |
| GGTTTGGAAGCTATACAATG+AGG | + | tig0018513:88451-88470 | Msa1367410:CDS | 40.0% | |
| ! | ATGAGTCTTGGATTTTGAGC+AGG | - | tig0018513:88573-88592 | None:intergenic | 40.0% |
| GATGTTGAGCAGTATTGCAT+AGG | - | tig0018513:88657-88676 | None:intergenic | 40.0% | |
| ! | GCTTCTGGAAAAATCATTGG+TGG | - | tig0018513:88777-88796 | None:intergenic | 40.0% |
| TGGCGAACAAATGAAAACAG+AGG | + | tig0018513:89122-89141 | Msa1367410:intron | 40.0% | |
| TGCCGGAATATGAATGCTAT+TGG | + | tig0018513:89543-89562 | Msa1367410:CDS | 40.0% | |
| CGGAATATGAATGCTATTGG+AGG | + | tig0018513:89546-89565 | Msa1367410:CDS | 40.0% | |
| !! | AGTAGCTGTAGCTTTTGGAA+TGG | + | tig0018513:89589-89608 | Msa1367410:CDS | 40.0% |
| ATGGTTGCAGCAAGGAAATA+TGG | + | tig0018513:89608-89627 | Msa1367410:CDS | 40.0% | |
| ATGGTACAGACATGACATTG+TGG | + | tig0018513:89627-89646 | Msa1367410:CDS | 40.0% | |
| ACAGACATGACATTGTGGTA+TGG | + | tig0018513:89632-89651 | Msa1367410:CDS | 40.0% | |
| TCTCTCAAAAGAGTCCTGTA+AGG | - | tig0018513:89677-89696 | None:intergenic | 40.0% | |
| !! | TACAGGACTCTTTTGAGAGA+AGG | + | tig0018513:89677-89696 | Msa1367410:CDS | 40.0% |
| !! | ACAGGACTCTTTTGAGAGAA+GGG | + | tig0018513:89678-89697 | Msa1367410:CDS | 40.0% |
| CAAGTGGATGGTAAGAGAAT+TGG | - | tig0018513:89736-89755 | None:intergenic | 40.0% | |
| CAATTCTCTTACCATCCACT+TGG | + | tig0018513:89734-89753 | Msa1367410:CDS | 40.0% | |
| CATTTCATGAGGGCTAATTC+TGG | + | tig0018513:89821-89840 | Msa1367410:CDS | 40.0% | |
| AAGGCAGATACTATGCTCAC+CGG | + | tig0018513:87032-87051 | Msa1367410:CDS | 45.0% | |
| ! | GTTCTTGCCATTTGCCAAAC+CGG | + | tig0018513:87379-87398 | Msa1367410:intron | 45.0% |
| TTTCACGAACTCAACCAGGT+TGG | - | tig0018513:87540-87559 | None:intergenic | 45.0% | |
| AGCATTTCACGAACTCAACC+AGG | - | tig0018513:87544-87563 | None:intergenic | 45.0% | |
| CAAAGTCACAACATGTGACC+AGG | - | tig0018513:88155-88174 | None:intergenic | 45.0% | |
| CCTAACTAAAACAGGAGAGG+GGG | - | tig0018513:88200-88219 | None:intergenic | 45.0% | |
| CCCTAACTAAAACAGGAGAG+GGG | - | tig0018513:88201-88220 | None:intergenic | 45.0% | |
| !!! | CCCCTCTCCTGTTTTAGTTA+GGG | + | tig0018513:88198-88217 | Msa1367410:intron | 45.0% |
| CACCCTAACTAAAACAGGAG+AGG | - | tig0018513:88203-88222 | None:intergenic | 45.0% | |
| !!! | CTCTCCTGTTTTAGTTAGGG+TGG | + | tig0018513:88201-88220 | Msa1367410:intron | 45.0% |
| AAGGCCACCCTAACTAAAAC+AGG | - | tig0018513:88208-88227 | None:intergenic | 45.0% | |
| ! | TTTGATGGAGCACCAGACTT+AGG | + | tig0018513:88474-88493 | Msa1367410:CDS | 45.0% |
| TGGTTGTTCTGCACATGTCT+CGG | + | tig0018513:88497-88516 | Msa1367410:CDS | 45.0% | |
| TGACATGGAGATGTATGCTG+TGG | + | tig0018513:88605-88624 | Msa1367410:CDS | 45.0% | |
| ! | CAGTATTGCATAGGTTGAGC+AGG | - | tig0018513:88648-88667 | None:intergenic | 45.0% |
| TGTGGAGGAGGAGAAGAAAT+GGG | - | tig0018513:88717-88736 | None:intergenic | 45.0% | |
| ATGTGGAGGAGGAGAAGAAA+TGG | - | tig0018513:88718-88737 | None:intergenic | 45.0% | |
| ! | ATTGGGGGTAGGTTGAAATG+TGG | - | tig0018513:88735-88754 | None:intergenic | 45.0% |
| ! | ATGGTGGAAGTTGTGGCATT+GGG | - | tig0018513:88752-88771 | None:intergenic | 45.0% |
| ! | AATGGTGGAAGTTGTGGCAT+TGG | - | tig0018513:88753-88772 | None:intergenic | 45.0% |
| CCTAGACCTCCTAATGTGTT+GGG | - | tig0018513:88909-88928 | None:intergenic | 45.0% | |
| CCAACACATTAGGAGGTCTA+GGG | + | tig0018513:88907-88926 | Msa1367410:intron | 45.0% | |
| GGTGATCTATGGGTACTACA+CGG | + | tig0018513:89098-89117 | Msa1367410:intron | 45.0% | |
| GTGATCTATGGGTACTACAC+GGG | + | tig0018513:89099-89118 | Msa1367410:intron | 45.0% | |
| AAAAGAAACACGCGCCAGAT+AGG | + | tig0018513:89346-89365 | Msa1367410:intron | 45.0% | |
| AAAGAAACACGCGCCAGATA+GGG | + | tig0018513:89347-89366 | Msa1367410:intron | 45.0% | |
| TTTCCTAAGCAGAAGGTCGT+AGG | - | tig0018513:89379-89398 | None:intergenic | 45.0% | |
| TGATAGGAAGTGGACAATGC+CGG | + | tig0018513:89526-89545 | Msa1367410:intron | 45.0% | |
| !!! | CTTTTGGAATGGTTGCAGCA+AGG | + | tig0018513:89600-89619 | Msa1367410:CDS | 45.0% |
| ACATTGTGGTATGGCCTGAA+AGG | + | tig0018513:89641-89660 | Msa1367410:CDS | 45.0% | |
| CATTGTGGTATGGCCTGAAA+GGG | + | tig0018513:89642-89661 | Msa1367410:CDS | 45.0% | |
| ATGTGTGTGACTACACCAAG+TGG | - | tig0018513:89752-89771 | None:intergenic | 45.0% | |
| !! | ATGCTTTGATGGGCTCAACT+AGG | + | tig0018513:89777-89796 | Msa1367410:CDS | 45.0% |
| !! | TGCTTTGATGGGCTCAACTA+GGG | + | tig0018513:89778-89797 | Msa1367410:CDS | 45.0% |
| ! | GTTTATGGTTTGGCTCAGGG+AGG | + | tig0018513:87291-87310 | Msa1367410:intron | 50.0% |
| !! | CGATTGACCGGTTTGGCAAA+TGG | - | tig0018513:87389-87408 | None:intergenic | 50.0% |
| ACTCTTGCGATTGACCGGTT+TGG | - | tig0018513:87396-87415 | None:intergenic | 50.0% | |
| !!! | CCCCCTCTCCTGTTTTAGTT+AGG | + | tig0018513:88197-88216 | Msa1367410:intron | 50.0% |
| TTGCCTCTAGTTGGGACAGT+TGG | + | tig0018513:88254-88273 | Msa1367410:intron | 50.0% | |
| TGCCTCTAGTTGGGACAGTT+GGG | + | tig0018513:88255-88274 | Msa1367410:intron | 50.0% | |
| GCAGAACAACCACCTAAGTC+TGG | - | tig0018513:88489-88508 | None:intergenic | 50.0% | |
| GGTTGTTCTGCACATGTCTC+GGG | + | tig0018513:88498-88517 | Msa1367410:CDS | 50.0% | |
| CAAGGAGGACCAATGAGTTG+TGG | + | tig0018513:88534-88553 | Msa1367410:CDS | 50.0% | |
| GGACCAATGAGTTGTGGTGA+AGG | + | tig0018513:88540-88559 | Msa1367410:CDS | 50.0% | |
| GCACCTTCACCACAACTCAT+TGG | - | tig0018513:88546-88565 | None:intergenic | 50.0% | |
| ! | ATGAGTTGTGGTGAAGGTGC+TGG | + | tig0018513:88546-88565 | Msa1367410:CDS | 50.0% |
| ! | GAAATGGGTGGTGCCAATGT+TGG | - | tig0018513:88702-88721 | None:intergenic | 50.0% |
| ! | GGTAGGTTGAAATGTGGAGG+AGG | - | tig0018513:88729-88748 | None:intergenic | 50.0% |
| TGGTGGAAGTTGTGGCATTG+GGG | - | tig0018513:88751-88770 | None:intergenic | 50.0% | |
| !! | GGTGGTAATGGTGGAAGTTG+TGG | - | tig0018513:88759-88778 | None:intergenic | 50.0% |
| GATGGACATGCTGAAGCTTC+TGG | - | tig0018513:88792-88811 | None:intergenic | 50.0% | |
| AAGAGTCGGCCCAACACATT+AGG | + | tig0018513:88897-88916 | Msa1367410:intron | 50.0% | |
| CCCAACACATTAGGAGGTCT+AGG | + | tig0018513:88906-88925 | Msa1367410:intron | 50.0% | |
| CCCTAGACCTCCTAATGTGT+TGG | - | tig0018513:88910-88929 | None:intergenic | 50.0% | |
| ATCTATGGGTACTACACGGG+TGG | + | tig0018513:89102-89121 | Msa1367410:intron | 50.0% | |
| GTCTAACACTGTTCAGGCAG+TGG | + | tig0018513:89305-89324 | Msa1367410:intron | 50.0% | |
| AAGAAACACGCGCCAGATAG+GGG | + | tig0018513:89348-89367 | Msa1367410:intron | 50.0% | |
| GAACCTACGACCTTCTGCTT+AGG | + | tig0018513:89373-89392 | Msa1367410:intron | 50.0% | |
| GCGTCTGTTTCCTAAGCAGA+AGG | - | tig0018513:89386-89405 | None:intergenic | 50.0% | |
| AACAAGCGCTTGTAGCTCAG+TGG | - | tig0018513:89414-89433 | None:intergenic | 50.0% | |
| AAGGATCTCCTCTCCCTTTC+AGG | - | tig0018513:89658-89677 | None:intergenic | 50.0% | |
| AAGGGAGAGGAGATCCTTAC+AGG | + | tig0018513:89660-89679 | Msa1367410:CDS | 50.0% | |
| GTGTGACTACACCAAGTGGA+TGG | - | tig0018513:89748-89767 | None:intergenic | 50.0% | |
| ATGAGGGCTAATTCTGGTGC+TGG | + | tig0018513:89827-89846 | Msa1367410:CDS | 50.0% | |
| TGCCCAACTGTCCCAACTAG+AGG | - | tig0018513:88260-88279 | None:intergenic | 55.0% | |
| ! | GATGGAGCACCAGACTTAGG+TGG | + | tig0018513:88477-88496 | Msa1367410:CDS | 55.0% |
| ! | TAGGTTGAGCAGGCTGAGCA+AGG | - | tig0018513:88638-88657 | None:intergenic | 55.0% |
| !! | ATGTTGGTGGTGGTGGGGAT+GGG | - | tig0018513:88686-88705 | None:intergenic | 55.0% |
| !! | AATGTTGGTGGTGGTGGGGA+TGG | - | tig0018513:88687-88706 | None:intergenic | 55.0% |
| ATCCCCACCACCACCAACAT+TGG | + | tig0018513:88686-88705 | Msa1367410:CDS | 55.0% | |
| !! | TGCCAATGTTGGTGGTGGTG+GGG | - | tig0018513:88691-88710 | None:intergenic | 55.0% |
| !! | GTGCCAATGTTGGTGGTGGT+GGG | - | tig0018513:88692-88711 | None:intergenic | 55.0% |
| ! | ATGGGTGGTGCCAATGTTGG+TGG | - | tig0018513:88699-88718 | None:intergenic | 55.0% |
| GGAGGAGGAGAAGAAATGGG+TGG | - | tig0018513:88714-88733 | None:intergenic | 55.0% | |
| ! | GGGGGTAGGTTGAAATGTGG+AGG | - | tig0018513:88732-88751 | None:intergenic | 55.0% |
| ! | GAAGTTGTGGCATTGGGGGT+AGG | - | tig0018513:88746-88765 | None:intergenic | 55.0% |
| ! | GGTGGAAGTTGTGGCATTGG+GGG | - | tig0018513:88750-88769 | None:intergenic | 55.0% |
| AGTCGGCCCAACACATTAGG+AGG | + | tig0018513:88900-88919 | Msa1367410:intron | 55.0% | |
| TCGTAGGTTCGACCCCTATC+TGG | - | tig0018513:89363-89382 | None:intergenic | 55.0% | |
| TGGTATGGCCTGAAAGGGAG+AGG | + | tig0018513:89647-89666 | Msa1367410:CDS | 55.0% | |
| AGTTGGGACAGTTGGGCAGC+TGG | + | tig0018513:88262-88281 | Msa1367410:intron | 60.0% | |
| TGAGCAGGCTGAGCAAGGAG+TGG | - | tig0018513:88633-88652 | None:intergenic | 60.0% | |
| !! | GGTGCCAATGTTGGTGGTGG+TGG | - | tig0018513:88693-88712 | None:intergenic | 60.0% |
| ! | GGTGGTGCCAATGTTGGTGG+TGG | - | tig0018513:88696-88715 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGGGATGGGT+TGG | - | tig0018513:88682-88701 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018513 | gene | 86841 | 90070 | 86841 | ID=Msa1367410;Name=Msa1367410 |
| tig0018513 | mRNA | 86841 | 90070 | 86841 | ID=Msa1367410-mRNA-1;Parent=Msa1367410;Name=Msa1367410-mRNA-1;_AED=0.32;_eAED=0.32;_QI=125|1|1|1|1|1|3|187|312 |
| tig0018513 | exon | 86841 | 87116 | 86841 | ID=Msa1367410-mRNA-1:exon:15596;Parent=Msa1367410-mRNA-1 |
| tig0018513 | exon | 88379 | 88814 | 88379 | ID=Msa1367410-mRNA-1:exon:15597;Parent=Msa1367410-mRNA-1 |
| tig0018513 | exon | 89532 | 90070 | 89532 | ID=Msa1367410-mRNA-1:exon:15598;Parent=Msa1367410-mRNA-1 |
| tig0018513 | five_prime_UTR | 86841 | 86965 | 86841 | ID=Msa1367410-mRNA-1:five_prime_utr;Parent=Msa1367410-mRNA-1 |
| tig0018513 | CDS | 86966 | 87116 | 86966 | ID=Msa1367410-mRNA-1:cds;Parent=Msa1367410-mRNA-1 |
| tig0018513 | CDS | 88379 | 88814 | 88379 | ID=Msa1367410-mRNA-1:cds;Parent=Msa1367410-mRNA-1 |
| tig0018513 | CDS | 89532 | 89883 | 89532 | ID=Msa1367410-mRNA-1:cds;Parent=Msa1367410-mRNA-1 |
| tig0018513 | three_prime_UTR | 89884 | 90070 | 89884 | ID=Msa1367410-mRNA-1:three_prime_utr;Parent=Msa1367410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
