Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323950 | sp|P49332|GSTXC_TOBAC | 68.349 | 218 | 68 | 1 | 3 | 219 | 4 | 221 | 2.54e-105 | 305 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323950 | G7LB15 | 94.064 | 219 | 13 | 0 | 1 | 219 | 1 | 219 | 4.56e-149 | 422 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0050730 | Msa1323950 | 0.804128 | 2.505895e-49 | -8.615850e-47 |
Msa0050760 | Msa1323950 | 0.802987 | 4.321550e-49 | -8.615850e-47 |
Msa0095380 | Msa1323950 | 0.803054 | 4.185676e-49 | -8.615850e-47 |
Msa0114540 | Msa1323950 | -0.800520 | 1.386715e-48 | -8.615850e-47 |
Msa0670980 | Msa1323950 | 0.813630 | 2.322588e-51 | -8.615850e-47 |
Msa0793720 | Msa1323950 | 0.804569 | 2.028262e-49 | -8.615850e-47 |
Msa0222920 | Msa1323950 | 0.832350 | 9.938984e-56 | -8.615850e-47 |
Msa0236980 | Msa1323950 | 0.804510 | 2.086517e-49 | -8.615850e-47 |
Msa1237030 | Msa1323950 | 0.827716 | 1.341366e-54 | -8.615850e-47 |
Msa1243040 | Msa1323950 | 0.831280 | 1.825856e-55 | -8.615850e-47 |
Msa1267840 | Msa1323950 | 0.810651 | 1.036609e-50 | -8.615850e-47 |
Msa1284490 | Msa1323950 | 0.852831 | 3.565021e-61 | -8.615850e-47 |
Msa1285730 | Msa1323950 | 0.850105 | 2.105611e-60 | -8.615850e-47 |
Msa1323950 | Msa1351480 | 0.945870 | 1.354845e-104 | -8.615850e-47 |
Msa1323950 | Msa1373330 | 0.801213 | 1.001033e-48 | -8.615850e-47 |
Msa1323950 | Msa1408790 | 0.814628 | 1.398274e-51 | -8.615850e-47 |
Msa1323950 | Msa1436040 | 0.805515 | 1.286238e-49 | -8.615850e-47 |
Msa1323950 | Msa1440600 | 0.802958 | 4.382822e-49 | -8.615850e-47 |
Msa0993530 | Msa1323950 | 0.803465 | 3.441029e-49 | -8.615850e-47 |
Msa0996080 | Msa1323950 | 0.800080 | 1.704793e-48 | -8.615850e-47 |
Msa1087470 | Msa1323950 | 0.802688 | 4.981348e-49 | -8.615850e-47 |
Msa0264350 | Msa1323950 | 0.806163 | 9.400425e-50 | -8.615850e-47 |
Msa1109570 | Msa1323950 | 0.801504 | 8.726191e-49 | -8.615850e-47 |
Msa0535030 | Msa1323950 | 0.806090 | 9.736269e-50 | -8.615850e-47 |
Msa0535060 | Msa1323950 | 0.804730 | 1.877755e-49 | -8.615850e-47 |
Msa0591060 | Msa1323950 | 0.802123 | 6.513856e-49 | -8.615850e-47 |
Msa0896220 | Msa1323950 | 0.807597 | 4.676726e-50 | -8.615850e-47 |
Msa0955300 | Msa1323950 | 0.804145 | 2.485540e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323950 | MtrunA17_Chr8g0357241 | 94.064 | 219 | 13 | 0 | 1 | 219 | 1 | 219 | 8.77e-153 | 422 |
Msa1323950 | MtrunA17_Chr8g0357211 | 94.064 | 219 | 13 | 0 | 1 | 219 | 1 | 219 | 2.81e-152 | 421 |
Msa1323950 | MtrunA17_Chr2g0312681 | 67.123 | 219 | 72 | 0 | 1 | 219 | 1 | 219 | 1.09e-107 | 308 |
Msa1323950 | MtrunA17_Chr2g0312771 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 2.02e-104 | 300 |
Msa1323950 | MtrunA17_Chr2g0312691 | 65.753 | 219 | 75 | 0 | 1 | 219 | 1 | 219 | 3.69e-104 | 300 |
Msa1323950 | MtrunA17_Chr2g0312751 | 65.297 | 219 | 76 | 0 | 1 | 219 | 1 | 219 | 4.17e-104 | 299 |
Msa1323950 | MtrunA17_Chr2g0312781 | 64.953 | 214 | 75 | 0 | 1 | 214 | 18 | 231 | 1.30e-101 | 293 |
Msa1323950 | MtrunA17_Chr2g0312711 | 63.014 | 219 | 80 | 1 | 1 | 219 | 1 | 218 | 4.62e-97 | 281 |
Msa1323950 | MtrunA17_Chr2g0312731 | 59.361 | 219 | 89 | 0 | 1 | 219 | 1 | 219 | 1.76e-96 | 280 |
Msa1323950 | MtrunA17_Chr2g0312791 | 60.909 | 220 | 84 | 2 | 1 | 218 | 1 | 220 | 7.55e-94 | 273 |
Msa1323950 | MtrunA17_Chr2g0312811 | 60.185 | 216 | 84 | 1 | 1 | 214 | 1 | 216 | 2.50e-92 | 270 |
Msa1323950 | MtrunA17_Chr3g0107731 | 54.884 | 215 | 97 | 0 | 5 | 219 | 10 | 224 | 9.32e-92 | 268 |
Msa1323950 | MtrunA17_Chr3g0107741 | 54.378 | 217 | 99 | 0 | 3 | 219 | 8 | 224 | 1.20e-90 | 265 |
Msa1323950 | MtrunA17_Chr2g0312721 | 55.869 | 213 | 94 | 0 | 1 | 213 | 1 | 213 | 8.52e-84 | 248 |
Msa1323950 | MtrunA17_Chr4g0069471 | 65.027 | 183 | 61 | 2 | 1 | 182 | 22 | 202 | 2.51e-82 | 243 |
Msa1323950 | MtrunA17_Chr5g0433801 | 50.935 | 214 | 103 | 2 | 2 | 214 | 4 | 216 | 2.12e-71 | 216 |
Msa1323950 | MtrunA17_Chr1g0196661 | 39.901 | 203 | 117 | 3 | 11 | 209 | 10 | 211 | 6.32e-44 | 147 |
Msa1323950 | MtrunA17_Chr4g0029341 | 39.906 | 213 | 123 | 3 | 1 | 209 | 1 | 212 | 1.51e-43 | 145 |
Msa1323950 | MtrunA17_Chr7g0240681 | 38.636 | 220 | 128 | 5 | 3 | 217 | 6 | 223 | 2.03e-43 | 145 |
Msa1323950 | MtrunA17_Chr5g0415411 | 44.949 | 198 | 94 | 6 | 2 | 187 | 3 | 197 | 4.08e-43 | 144 |
Msa1323950 | MtrunA17_Chr5g0417011 | 34.597 | 211 | 131 | 2 | 2 | 205 | 5 | 215 | 6.51e-43 | 144 |
Msa1323950 | MtrunA17_Chr4g0008781 | 37.799 | 209 | 125 | 4 | 3 | 208 | 7 | 213 | 1.29e-42 | 143 |
Msa1323950 | MtrunA17_Chr7g0240641 | 38.756 | 209 | 123 | 4 | 3 | 208 | 6 | 212 | 5.94e-42 | 141 |
Msa1323950 | MtrunA17_Chr8g0379581 | 35.484 | 217 | 137 | 2 | 2 | 216 | 3 | 218 | 7.17e-42 | 141 |
Msa1323950 | MtrunA17_Chr7g0240691 | 39.726 | 219 | 123 | 5 | 3 | 217 | 36 | 249 | 7.47e-42 | 142 |
Msa1323950 | MtrunA17_Chr7g0240631 | 37.321 | 209 | 126 | 4 | 3 | 208 | 6 | 212 | 1.47e-41 | 140 |
Msa1323950 | MtrunA17_Chr3g0132581 | 45.455 | 176 | 94 | 2 | 1 | 175 | 1 | 175 | 2.17e-41 | 140 |
Msa1323950 | MtrunA17_Chr7g0240611 | 44.624 | 186 | 98 | 5 | 3 | 187 | 6 | 187 | 4.45e-41 | 139 |
Msa1323950 | MtrunA17_Chr4g0008791 | 38.942 | 208 | 122 | 4 | 4 | 208 | 7 | 212 | 1.61e-40 | 138 |
Msa1323950 | MtrunA17_Chr1g0196721 | 41.089 | 202 | 114 | 3 | 11 | 208 | 9 | 209 | 1.43e-39 | 135 |
Msa1323950 | MtrunA17_Chr1g0196691 | 38.605 | 215 | 118 | 5 | 4 | 209 | 28 | 237 | 1.53e-38 | 133 |
Msa1323950 | MtrunA17_Chr7g0240671 | 46.061 | 165 | 84 | 4 | 1 | 162 | 1 | 163 | 3.77e-38 | 132 |
Msa1323950 | MtrunA17_Chr8g0379561 | 39.779 | 181 | 106 | 2 | 7 | 185 | 9 | 188 | 5.32e-38 | 131 |
Msa1323950 | MtrunA17_Chr7g0240531 | 38.756 | 209 | 118 | 6 | 13 | 217 | 16 | 218 | 8.40e-38 | 131 |
Msa1323950 | MtrunA17_Chr1g0196711 | 40.594 | 202 | 115 | 4 | 11 | 208 | 10 | 210 | 9.30e-38 | 130 |
Msa1323950 | MtrunA17_Chr8g0363751 | 40.404 | 198 | 109 | 5 | 7 | 195 | 8 | 205 | 1.14e-37 | 130 |
Msa1323950 | MtrunA17_Chr7g0240541 | 37.500 | 208 | 122 | 5 | 13 | 217 | 16 | 218 | 2.46e-37 | 129 |
Msa1323950 | MtrunA17_Chr7g0240561 | 38.806 | 201 | 116 | 5 | 3 | 199 | 6 | 203 | 3.70e-37 | 129 |
Msa1323950 | MtrunA17_Chr7g0240511 | 38.942 | 208 | 114 | 7 | 13 | 217 | 16 | 213 | 2.47e-36 | 127 |
Msa1323950 | MtrunA17_Chr6g0483141 | 37.864 | 206 | 118 | 5 | 18 | 216 | 17 | 219 | 6.07e-36 | 126 |
Msa1323950 | MtrunA17_Chr1g0196771 | 36.019 | 211 | 127 | 5 | 11 | 216 | 10 | 217 | 1.60e-35 | 125 |
Msa1323950 | MtrunA17_Chr7g0240551 | 36.538 | 208 | 124 | 5 | 13 | 217 | 16 | 218 | 1.64e-35 | 125 |
Msa1323950 | MtrunA17_Chr1g0212301 | 38.119 | 202 | 115 | 4 | 7 | 201 | 6 | 204 | 2.05e-35 | 124 |
Msa1323950 | MtrunA17_Chr7g0240651 | 45.679 | 162 | 83 | 4 | 3 | 161 | 6 | 165 | 5.14e-35 | 124 |
Msa1323950 | MtrunA17_Chr7g0240581 | 40.212 | 189 | 106 | 5 | 3 | 187 | 6 | 191 | 7.27e-34 | 120 |
Msa1323950 | MtrunA17_Chr7g0240661 | 37.799 | 209 | 121 | 5 | 3 | 208 | 6 | 208 | 5.90e-33 | 118 |
Msa1323950 | MtrunA17_Chr7g0240521 | 37.234 | 188 | 113 | 4 | 3 | 187 | 13 | 198 | 2.93e-31 | 114 |
Msa1323950 | MtrunA17_Chr8g0391631 | 42.105 | 152 | 81 | 4 | 7 | 151 | 24 | 175 | 3.29e-31 | 112 |
Msa1323950 | MtrunA17_Chr2g0313561 | 66.667 | 72 | 24 | 0 | 47 | 118 | 1 | 72 | 4.53e-30 | 106 |
Msa1323950 | MtrunA17_Chr7g0263221 | 29.108 | 213 | 133 | 8 | 10 | 216 | 32 | 232 | 2.97e-13 | 66.6 |
Msa1323950 | MtrunA17_Chr5g0415421 | 45.205 | 73 | 38 | 1 | 28 | 98 | 11 | 83 | 3.47e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323950 | AT1G78380.1 | 63.889 | 216 | 78 | 0 | 1 | 216 | 1 | 216 | 2.57e-99 | 288 |
Msa1323950 | AT1G78370.1 | 60.000 | 215 | 86 | 0 | 1 | 215 | 1 | 215 | 1.08e-96 | 281 |
Msa1323950 | AT1G17170.1 | 60.731 | 219 | 85 | 1 | 1 | 219 | 1 | 218 | 7.15e-96 | 279 |
Msa1323950 | AT1G17180.1 | 59.817 | 219 | 88 | 0 | 1 | 219 | 1 | 219 | 7.92e-96 | 279 |
Msa1323950 | AT1G78340.1 | 61.215 | 214 | 83 | 0 | 1 | 214 | 1 | 214 | 1.27e-94 | 276 |
Msa1323950 | AT1G78360.1 | 60.000 | 220 | 87 | 1 | 1 | 219 | 1 | 220 | 2.74e-94 | 275 |
Msa1323950 | AT1G78320.1 | 59.813 | 214 | 86 | 0 | 1 | 214 | 1 | 214 | 3.07e-89 | 262 |
Msa1323950 | AT1G17190.1 | 55.140 | 214 | 96 | 0 | 3 | 216 | 4 | 217 | 1.47e-85 | 253 |
Msa1323950 | AT1G53680.1 | 52.995 | 217 | 100 | 2 | 5 | 219 | 8 | 224 | 1.86e-83 | 248 |
Msa1323950 | AT3G43800.1 | 53.774 | 212 | 94 | 3 | 3 | 210 | 4 | 215 | 3.02e-74 | 224 |
Msa1323950 | AT1G78320.2 | 50.935 | 214 | 78 | 1 | 1 | 214 | 1 | 187 | 1.49e-68 | 209 |
Msa1323950 | AT3G09270.1 | 46.809 | 188 | 97 | 2 | 3 | 187 | 5 | 192 | 4.29e-47 | 155 |
Msa1323950 | AT2G29420.1 | 39.048 | 210 | 125 | 2 | 2 | 209 | 7 | 215 | 8.57e-47 | 154 |
Msa1323950 | AT1G10360.1 | 42.051 | 195 | 105 | 4 | 2 | 188 | 3 | 197 | 4.76e-43 | 145 |
Msa1323950 | AT1G74590.1 | 34.545 | 220 | 132 | 4 | 5 | 215 | 8 | 224 | 5.71e-43 | 145 |
Msa1323950 | AT1G10370.1 | 38.863 | 211 | 121 | 4 | 7 | 209 | 8 | 218 | 6.94e-43 | 144 |
Msa1323950 | AT1G59670.1 | 40.090 | 222 | 124 | 5 | 3 | 215 | 5 | 226 | 2.32e-41 | 140 |
Msa1323950 | AT2G29460.1 | 40.291 | 206 | 117 | 4 | 3 | 204 | 6 | 209 | 3.42e-41 | 140 |
Msa1323950 | AT1G59700.1 | 39.462 | 223 | 124 | 6 | 3 | 215 | 5 | 226 | 1.11e-40 | 139 |
Msa1323950 | AT2G29480.1 | 44.720 | 161 | 85 | 2 | 3 | 160 | 6 | 165 | 2.27e-40 | 138 |
Msa1323950 | AT2G29490.1 | 45.342 | 161 | 84 | 2 | 3 | 160 | 6 | 165 | 2.28e-40 | 138 |
Msa1323950 | AT2G29450.1 | 48.466 | 163 | 77 | 4 | 3 | 160 | 5 | 165 | 4.21e-40 | 137 |
Msa1323950 | AT2G29440.1 | 47.273 | 165 | 75 | 4 | 3 | 160 | 5 | 164 | 5.73e-40 | 137 |
Msa1323950 | AT1G27140.1 | 39.512 | 205 | 114 | 4 | 15 | 209 | 17 | 221 | 1.36e-39 | 136 |
Msa1323950 | AT1G27130.1 | 35.747 | 221 | 130 | 5 | 7 | 218 | 9 | 226 | 5.04e-39 | 134 |
Msa1323950 | AT2G29470.1 | 39.000 | 200 | 115 | 5 | 7 | 201 | 10 | 207 | 5.26e-39 | 134 |
Msa1323950 | AT5G62480.1 | 36.872 | 179 | 105 | 1 | 5 | 175 | 9 | 187 | 5.53e-38 | 132 |
Msa1323950 | AT1G69920.1 | 35.426 | 223 | 128 | 6 | 7 | 218 | 37 | 254 | 1.20e-36 | 129 |
Msa1323950 | AT1G69930.1 | 34.762 | 210 | 130 | 3 | 7 | 209 | 15 | 224 | 1.14e-34 | 123 |
Msa1323950 | AT5G62480.3 | 28.492 | 179 | 93 | 2 | 5 | 175 | 9 | 160 | 1.57e-20 | 86.3 |
Msa1323950 | AT5G62480.2 | 28.492 | 179 | 94 | 2 | 5 | 175 | 9 | 161 | 2.06e-20 | 85.9 |
Find 65 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAAGCTCAAGCAAGATTT+TGG | 0.160142 | 8_4:-32992767 | Msa1323950:CDS |
ATGATGATGGATTCACAAAT+TGG | 0.232208 | 8_4:+32992852 | None:intergenic |
AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8_4:-32992981 | Msa1323950:CDS |
GAAATGTAAACTAAACAATT+TGG | 0.242177 | 8_4:-32991899 | Msa1323950:three_prime_UTR |
CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8_4:-32992184 | Msa1323950:CDS |
TTGAAAAGAACAAGGCTTTC+AGG | 0.250379 | 8_4:+32993090 | None:intergenic |
GTGATGTTGGAGGGAGGATA+TGG | 0.264890 | 8_4:-32992279 | Msa1323950:CDS |
TTTCTCATCCGCAACAGATT+TGG | 0.278908 | 8_4:+32992012 | None:intergenic |
ACTGGAATCTTCTTGTGAAT+TGG | 0.280000 | 8_4:+32992894 | None:intergenic |
CTTTGATCCCTTTCTATAGT+TGG | 0.290757 | 8_4:-32992132 | Msa1323950:CDS |
CTATAGGAAGAGGTTTGATT+TGG | 0.319582 | 8_4:-32991966 | Msa1323950:CDS |
GATGAATGGCTTAGTATGTT+TGG | 0.324709 | 8_4:-32993014 | Msa1323950:CDS |
CATTATACATATAACATATA+TGG | 0.336167 | 8_4:+32991663 | None:intergenic |
AGAGTTGATTGATGGCTTAA+AGG | 0.336739 | 8_4:-32992221 | Msa1323950:CDS |
GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8_4:+32992916 | None:intergenic |
GGTTGCTCCTATTAGTGCTT+TGG | 0.353192 | 8_4:-32991878 | Msa1323950:three_prime_UTR |
CTTGCTTGAGCTTTCTCATA+AGG | 0.355050 | 8_4:+32992774 | None:intergenic |
GCAAAGAAAGAGTTGATTGA+TGG | 0.384134 | 8_4:-32992229 | Msa1323950:CDS |
TATTTGACCAAAGCACTAAT+AGG | 0.392230 | 8_4:+32991871 | None:intergenic |
TATGTATAATGTATTTATGT+AGG | 0.399343 | 8_4:-32991651 | Msa1323950:three_prime_UTR |
TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | 8_4:+32992876 | None:intergenic |
AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8_4:-32992251 | Msa1323950:CDS |
CTCCTCCTCGTAGTTAAATC+AGG | 0.426001 | 8_4:+32991686 | None:intergenic |
GATTCCAGTTCTTATCCATA+AGG | 0.427078 | 8_4:-32992880 | Msa1323950:CDS |
TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8_4:-32992827 | Msa1323950:CDS |
AGTTAATATTGTTAGATGAA+TGG | 0.437571 | 8_4:-32993028 | Msa1323950:CDS |
AATGTGTCACCACCAAAATA+AGG | 0.439985 | 8_4:+32992172 | None:intergenic |
TGATGAGGTTTGGAAGGATA+AGG | 0.440755 | 8_4:-32992817 | Msa1323950:CDS |
TTTAGGATCTGAGTACAGAT+TGG | 0.455192 | 8_4:+32991717 | None:intergenic |
TTCCTTCCTTTGTTGCTATG+TGG | 0.458672 | 8_4:-32991752 | Msa1323950:three_prime_UTR |
ATTCCAGTTCTTATCCATAA+GGG | 0.462545 | 8_4:-32992879 | Msa1323950:CDS |
TGATGTTGGAGGGAGGATAT+GGG | 0.462736 | 8_4:-32992278 | Msa1323950:CDS |
TTTGGACTGAGAAGACACTT+TGG | 0.480983 | 8_4:-32991948 | Msa1323950:exon |
AAAATGCAGGTTGGTGATGT+TGG | 0.481244 | 8_4:-32992292 | Msa1323950:intron |
TATAAAACCAACTATAGAAA+GGG | 0.488530 | 8_4:+32992125 | None:intergenic |
AATATACTCAACAATGATGA+TGG | 0.489877 | 8_4:+32992839 | None:intergenic |
GAGTACAGATTGGAGGTGAT+TGG | 0.492012 | 8_4:+32991727 | None:intergenic |
AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8_4:-32992202 | Msa1323950:CDS |
GTATAAAACCAACTATAGAA+AGG | 0.503827 | 8_4:+32992124 | None:intergenic |
AATATTAACTCCTCTGCCAT+TGG | 0.514154 | 8_4:+32993041 | None:intergenic |
AGGGATTAAGTATGAGTACA+AGG | 0.524364 | 8_4:-32992961 | Msa1323950:CDS |
AGGATCTGAGTACAGATTGG+AGG | 0.533882 | 8_4:+32991720 | None:intergenic |
AGCTTTCTCATAAGGATCTG+AGG | 0.541397 | 8_4:+32992782 | None:intergenic |
GACACTTTGGACTCTAAGAA+TGG | 0.544103 | 8_4:-32991935 | Msa1323950:three_prime_UTR |
GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8_4:-32992823 | Msa1323950:CDS |
TGCAGGTTGGTGATGTTGGA+GGG | 0.552099 | 8_4:-32992288 | Msa1323950:intron |
TTGTTGTTGACTATAGGAAG+AGG | 0.553068 | 8_4:-32991976 | Msa1323950:CDS |
AGTGTGATAAACTGATTGCT+TGG | 0.559583 | 8_4:-32992066 | Msa1323950:CDS |
GTATGTTTGGTATGAGAGCA+AGG | 0.566057 | 8_4:-32993001 | Msa1323950:CDS |
GTGTGATAAACTGATTGCTT+GGG | 0.572223 | 8_4:-32992065 | Msa1323950:CDS |
CAGTGTTTCCAAATCTGTTG+CGG | 0.573601 | 8_4:-32992020 | Msa1323950:CDS |
GCTTTCTCATAAGGATCTGA+GGG | 0.584199 | 8_4:+32992783 | None:intergenic |
ATGCAGGTTGGTGATGTTGG+AGG | 0.585807 | 8_4:-32992289 | Msa1323950:intron |
GTTGGAGGGAGGATATGGGC+TGG | 0.592056 | 8_4:-32992274 | Msa1323950:CDS |
CATTGTTGAGTATATTGATG+AGG | 0.596226 | 8_4:-32992832 | Msa1323950:CDS |
TATGAGAGCAAGGATAGCAT+TGG | 0.605598 | 8_4:-32992991 | Msa1323950:CDS |
AACCACATAGCAACAAAGGA+AGG | 0.613591 | 8_4:+32991750 | None:intergenic |
TGTCACCACCAAAATAAGGT+TGG | 0.621870 | 8_4:+32992176 | None:intergenic |
GAAATTATGCAACTTCAAAG+TGG | 0.628741 | 8_4:-32992095 | Msa1323950:CDS |
TGAAAGATTTGAAAAGAACA+AGG | 0.634058 | 8_4:+32993082 | None:intergenic |
ATTATGCAACTTCAAAGTGG+AGG | 0.642784 | 8_4:-32992092 | Msa1323950:CDS |
TTGGAACCACATAGCAACAA+AGG | 0.650782 | 8_4:+32991746 | None:intergenic |
AGGTTGGTGATGTTGGAGGG+AGG | 0.678043 | 8_4:-32992285 | Msa1323950:CDS |
TACCTGATTTAACTACGAGG+AGG | 0.709862 | 8_4:-32991688 | Msa1323950:three_prime_UTR |
TAGTACCTGATTTAACTACG+AGG | 0.819381 | 8_4:-32991691 | Msa1323950:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATATGGTAAAAACTT+TGG | + | chr8_4:32992055-32992074 | None:intergenic | 15.0% |
!! | TAATGAATTAAATAACATGA+TGG | - | chr8_4:32992190-32992209 | Msa1323950:CDS | 15.0% |
!! | TTAATATGTTAAAAAAATGC+AGG | - | chr8_4:32992453-32992472 | Msa1323950:intron | 15.0% |
!! | AAAATTTACACTTGAAAAAT+TGG | - | chr8_4:32992980-32992999 | Msa1323950:CDS | 15.0% |
!! | AAATTTACACTTGAAAAATT+GGG | - | chr8_4:32992981-32993000 | Msa1323950:CDS | 15.0% |
!! | CATTATACATATAACATATA+TGG | + | chr8_4:32993098-32993117 | None:intergenic | 15.0% |
!! | TATGTATAATGTATTTATGT+AGG | - | chr8_4:32993107-32993126 | Msa1323950:five_prime_UTR | 15.0% |
!! | TAAAAATATGGTAAAAACTT+TGG | + | chr8_4:32992055-32992074 | None:intergenic | 15.0% |
!! | TAATGAATTAAATAACATGA+TGG | - | chr8_4:32992190-32992209 | Msa1323950:CDS | 15.0% |
!! | TTAATATGTTAAAAAAATGC+AGG | - | chr8_4:32992453-32992472 | Msa1323950:intron | 15.0% |
!! | AAAATTTACACTTGAAAAAT+TGG | - | chr8_4:32992980-32992999 | Msa1323950:CDS | 15.0% |
!! | AAATTTACACTTGAAAAATT+GGG | - | chr8_4:32992981-32993000 | Msa1323950:CDS | 15.0% |
!! | CATTATACATATAACATATA+TGG | + | chr8_4:32993098-32993117 | None:intergenic | 15.0% |
!! | TATGTATAATGTATTTATGT+AGG | - | chr8_4:32993107-32993126 | Msa1323950:five_prime_UTR | 15.0% |
!! | AGTTAATATTGTTAGATGAA+TGG | - | chr8_4:32991730-32991749 | Msa1323950:three_prime_UTR | 20.0% |
!! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8_4:32992219-32992238 | None:intergenic | 20.0% |
!!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8_4:32992228-32992247 | Msa1323950:CDS | 20.0% |
!! | TATCCATATTATTAAAGACT+AGG | - | chr8_4:32992388-32992407 | Msa1323950:intron | 20.0% |
!! | TATAAAACCAACTATAGAAA+GGG | + | chr8_4:32992636-32992655 | None:intergenic | 20.0% |
!! | GAAATGTAAACTAAACAATT+TGG | - | chr8_4:32992859-32992878 | Msa1323950:CDS | 20.0% |
!! | AGTTAATATTGTTAGATGAA+TGG | - | chr8_4:32991730-32991749 | Msa1323950:three_prime_UTR | 20.0% |
!! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8_4:32992219-32992238 | None:intergenic | 20.0% |
!!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8_4:32992228-32992247 | Msa1323950:CDS | 20.0% |
!! | TATCCATATTATTAAAGACT+AGG | - | chr8_4:32992388-32992407 | Msa1323950:intron | 20.0% |
!! | TATAAAACCAACTATAGAAA+GGG | + | chr8_4:32992636-32992655 | None:intergenic | 20.0% |
!! | GAAATGTAAACTAAACAATT+TGG | - | chr8_4:32992859-32992878 | Msa1323950:CDS | 20.0% |
! | TGAAAGATTTGAAAAGAACA+AGG | + | chr8_4:32991679-32991698 | None:intergenic | 25.0% |
! | AATATACTCAACAATGATGA+TGG | + | chr8_4:32991922-32991941 | None:intergenic | 25.0% |
!! | ATTTTTACTTATTTCCTGCT+AGG | + | chr8_4:32992078-32992097 | None:intergenic | 25.0% |
!!! | GTATTGTTTTTGCTTTTGAA+TGG | - | chr8_4:32992155-32992174 | Msa1323950:CDS | 25.0% |
! | TTTCTCTAATATTCAATGGA+TGG | - | chr8_4:32992232-32992251 | Msa1323950:CDS | 25.0% |
! | TACTATATTCATATCTCACT+AGG | + | chr8_4:32992318-32992337 | None:intergenic | 25.0% |
! | CTTCATATTTCATCAATGAA+TGG | - | chr8_4:32992344-32992363 | Msa1323950:intron | 25.0% |
! | GGATTTATCATTCATCTTAT+TGG | - | chr8_4:32992365-32992384 | Msa1323950:intron | 25.0% |
!! | CAACCTAGTCTTTAATAATA+TGG | + | chr8_4:32992394-32992413 | None:intergenic | 25.0% |
! | TATGTTAAAAAAATGCAGGT+TGG | - | chr8_4:32992457-32992476 | Msa1323950:intron | 25.0% |
! | GTATAAAACCAACTATAGAA+AGG | + | chr8_4:32992637-32992656 | None:intergenic | 25.0% |
!!! | ATGATTTTGTTGTTGACTAT+AGG | - | chr8_4:32992776-32992795 | Msa1323950:CDS | 25.0% |
!! | TAAGAATGGTATTGTTTTCT+TGG | - | chr8_4:32992837-32992856 | Msa1323950:CDS | 25.0% |
!! | TAAATCAGGTACTATGTTTT+AGG | + | chr8_4:32993061-32993080 | None:intergenic | 25.0% |
! | TGAAAGATTTGAAAAGAACA+AGG | + | chr8_4:32991679-32991698 | None:intergenic | 25.0% |
! | AATATACTCAACAATGATGA+TGG | + | chr8_4:32991922-32991941 | None:intergenic | 25.0% |
!! | ATTTTTACTTATTTCCTGCT+AGG | + | chr8_4:32992078-32992097 | None:intergenic | 25.0% |
!!! | GTATTGTTTTTGCTTTTGAA+TGG | - | chr8_4:32992155-32992174 | Msa1323950:CDS | 25.0% |
! | TTTCTCTAATATTCAATGGA+TGG | - | chr8_4:32992232-32992251 | Msa1323950:CDS | 25.0% |
! | TACTATATTCATATCTCACT+AGG | + | chr8_4:32992318-32992337 | None:intergenic | 25.0% |
! | CTTCATATTTCATCAATGAA+TGG | - | chr8_4:32992344-32992363 | Msa1323950:intron | 25.0% |
! | GGATTTATCATTCATCTTAT+TGG | - | chr8_4:32992365-32992384 | Msa1323950:intron | 25.0% |
!! | CAACCTAGTCTTTAATAATA+TGG | + | chr8_4:32992394-32992413 | None:intergenic | 25.0% |
! | TATGTTAAAAAAATGCAGGT+TGG | - | chr8_4:32992457-32992476 | Msa1323950:intron | 25.0% |
! | GTATAAAACCAACTATAGAA+AGG | + | chr8_4:32992637-32992656 | None:intergenic | 25.0% |
!!! | ATGATTTTGTTGTTGACTAT+AGG | - | chr8_4:32992776-32992795 | Msa1323950:CDS | 25.0% |
!! | TAAGAATGGTATTGTTTTCT+TGG | - | chr8_4:32992837-32992856 | Msa1323950:CDS | 25.0% |
!! | TAAATCAGGTACTATGTTTT+AGG | + | chr8_4:32993061-32993080 | None:intergenic | 25.0% |
!!! | TCTGTGATTGTTTTTACCAA+TGG | - | chr8_4:32991701-32991720 | Msa1323950:three_prime_UTR | 30.0% |
!! | GATTCATTTGCAAAAGCATT+TGG | + | chr8_4:32991845-32991864 | None:intergenic | 30.0% |
ATTCCAGTTCTTATCCATAA+GGG | - | chr8_4:32991879-32991898 | Msa1323950:three_prime_UTR | 30.0% | |
!! | ATGATGATGGATTCACAAAT+TGG | + | chr8_4:32991909-32991928 | None:intergenic | 30.0% |
CATTGTTGAGTATATTGATG+AGG | - | chr8_4:32991926-32991945 | Msa1323950:three_prime_UTR | 30.0% | |
TTGAGTATATTGATGAGGTT+TGG | - | chr8_4:32991931-32991950 | Msa1323950:three_prime_UTR | 30.0% | |
!!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | chr8_4:32992027-32992046 | Msa1323950:CDS | 30.0% |
!! | TTACCATATTTTTACCTAGC+AGG | - | chr8_4:32992061-32992080 | Msa1323950:CDS | 30.0% |
TTTCCTGCTAGGTAAAAATA+TGG | + | chr8_4:32992067-32992086 | None:intergenic | 30.0% | |
ATATTCATATCTCACTAGGA+AGG | + | chr8_4:32992314-32992333 | None:intergenic | 30.0% | |
AAAGAGAGATGAGATTGAAT+TGG | - | chr8_4:32992507-32992526 | Msa1323950:intron | 30.0% | |
GAAATTATGCAACTTCAAAG+TGG | - | chr8_4:32992663-32992682 | Msa1323950:intron | 30.0% | |
! | TATTTGACCAAAGCACTAAT+AGG | + | chr8_4:32992890-32992909 | None:intergenic | 30.0% |
! | TATAGTTATGCAAGTTTTGC+AGG | - | chr8_4:32992938-32992957 | Msa1323950:CDS | 30.0% |
!!! | TCTGTGATTGTTTTTACCAA+TGG | - | chr8_4:32991701-32991720 | Msa1323950:three_prime_UTR | 30.0% |
!! | GATTCATTTGCAAAAGCATT+TGG | + | chr8_4:32991845-32991864 | None:intergenic | 30.0% |
ATTCCAGTTCTTATCCATAA+GGG | - | chr8_4:32991879-32991898 | Msa1323950:three_prime_UTR | 30.0% | |
!! | ATGATGATGGATTCACAAAT+TGG | + | chr8_4:32991909-32991928 | None:intergenic | 30.0% |
CATTGTTGAGTATATTGATG+AGG | - | chr8_4:32991926-32991945 | Msa1323950:three_prime_UTR | 30.0% | |
TTGAGTATATTGATGAGGTT+TGG | - | chr8_4:32991931-32991950 | Msa1323950:three_prime_UTR | 30.0% | |
!!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | chr8_4:32992027-32992046 | Msa1323950:CDS | 30.0% |
!! | TTACCATATTTTTACCTAGC+AGG | - | chr8_4:32992061-32992080 | Msa1323950:CDS | 30.0% |
TTTCCTGCTAGGTAAAAATA+TGG | + | chr8_4:32992067-32992086 | None:intergenic | 30.0% | |
ATATTCATATCTCACTAGGA+AGG | + | chr8_4:32992314-32992333 | None:intergenic | 30.0% | |
AAAGAGAGATGAGATTGAAT+TGG | - | chr8_4:32992507-32992526 | Msa1323950:intron | 30.0% | |
GAAATTATGCAACTTCAAAG+TGG | - | chr8_4:32992663-32992682 | Msa1323950:intron | 30.0% | |
! | TATTTGACCAAAGCACTAAT+AGG | + | chr8_4:32992890-32992909 | None:intergenic | 30.0% |
! | TATAGTTATGCAAGTTTTGC+AGG | - | chr8_4:32992938-32992957 | Msa1323950:CDS | 30.0% |
TTGAAAAGAACAAGGCTTTC+AGG | + | chr8_4:32991671-32991690 | None:intergenic | 35.0% | |
!!! | ATTGTTTTTACCAATGGCAG+AGG | - | chr8_4:32991707-32991726 | Msa1323950:three_prime_UTR | 35.0% |
AATATTAACTCCTCTGCCAT+TGG | + | chr8_4:32991720-32991739 | None:intergenic | 35.0% | |
GATGAATGGCTTAGTATGTT+TGG | - | chr8_4:32991744-32991763 | Msa1323950:three_prime_UTR | 35.0% | |
AGGGATTAAGTATGAGTACA+AGG | - | chr8_4:32991797-32991816 | Msa1323950:three_prime_UTR | 35.0% | |
ACTGGAATCTTCTTGTGAAT+TGG | + | chr8_4:32991867-32991886 | None:intergenic | 35.0% | |
GATTCCAGTTCTTATCCATA+AGG | - | chr8_4:32991878-32991897 | Msa1323950:three_prime_UTR | 35.0% | |
TTTCCCTTATGGATAAGAAC+TGG | + | chr8_4:32991885-32991904 | None:intergenic | 35.0% | |
!!! | CACAAATTGGTTTTCCCTTA+TGG | + | chr8_4:32991896-32991915 | None:intergenic | 35.0% |
GTATATTGATGAGGTTTGGA+AGG | - | chr8_4:32991935-32991954 | Msa1323950:three_prime_UTR | 35.0% | |
! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8_4:32991991-32992010 | Msa1323950:CDS | 35.0% |
! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8_4:32991992-32992011 | Msa1323950:CDS | 35.0% |
! | GCAAAGAAAGAGTTGATTGA+TGG | - | chr8_4:32992529-32992548 | Msa1323950:intron | 35.0% |
! | AGAGTTGATTGATGGCTTAA+AGG | - | chr8_4:32992537-32992556 | Msa1323950:intron | 35.0% |
AAGGAATTAGAGAATGTGCT+TGG | - | chr8_4:32992556-32992575 | Msa1323950:intron | 35.0% | |
AATGTGTCACCACCAAAATA+AGG | + | chr8_4:32992589-32992608 | None:intergenic | 35.0% | |
!!! | TATTTTGGTGGTGACACATT+TGG | - | chr8_4:32992589-32992608 | Msa1323950:intron | 35.0% |
!!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8_4:32992590-32992609 | Msa1323950:intron | 35.0% |
CTTTGATCCCTTTCTATAGT+TGG | - | chr8_4:32992626-32992645 | Msa1323950:intron | 35.0% | |
ATTATGCAACTTCAAAGTGG+AGG | - | chr8_4:32992666-32992685 | Msa1323950:intron | 35.0% | |
AGTGTGATAAACTGATTGCT+TGG | - | chr8_4:32992692-32992711 | Msa1323950:intron | 35.0% | |
GTGTGATAAACTGATTGCTT+GGG | - | chr8_4:32992693-32992712 | Msa1323950:intron | 35.0% | |
! | TTGTTGTTGACTATAGGAAG+AGG | - | chr8_4:32992782-32992801 | Msa1323950:CDS | 35.0% |
CTATAGGAAGAGGTTTGATT+TGG | - | chr8_4:32992792-32992811 | Msa1323950:CDS | 35.0% | |
! | TTTAGGATCTGAGTACAGAT+TGG | + | chr8_4:32993044-32993063 | None:intergenic | 35.0% |
TAGTACCTGATTTAACTACG+AGG | - | chr8_4:32993067-32993086 | Msa1323950:five_prime_UTR | 35.0% | |
TTGAAAAGAACAAGGCTTTC+AGG | + | chr8_4:32991671-32991690 | None:intergenic | 35.0% | |
!!! | ATTGTTTTTACCAATGGCAG+AGG | - | chr8_4:32991707-32991726 | Msa1323950:three_prime_UTR | 35.0% |
AATATTAACTCCTCTGCCAT+TGG | + | chr8_4:32991720-32991739 | None:intergenic | 35.0% | |
GATGAATGGCTTAGTATGTT+TGG | - | chr8_4:32991744-32991763 | Msa1323950:three_prime_UTR | 35.0% | |
AGGGATTAAGTATGAGTACA+AGG | - | chr8_4:32991797-32991816 | Msa1323950:three_prime_UTR | 35.0% | |
ACTGGAATCTTCTTGTGAAT+TGG | + | chr8_4:32991867-32991886 | None:intergenic | 35.0% | |
GATTCCAGTTCTTATCCATA+AGG | - | chr8_4:32991878-32991897 | Msa1323950:three_prime_UTR | 35.0% | |
TTTCCCTTATGGATAAGAAC+TGG | + | chr8_4:32991885-32991904 | None:intergenic | 35.0% | |
!!! | CACAAATTGGTTTTCCCTTA+TGG | + | chr8_4:32991896-32991915 | None:intergenic | 35.0% |
GTATATTGATGAGGTTTGGA+AGG | - | chr8_4:32991935-32991954 | Msa1323950:three_prime_UTR | 35.0% | |
! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8_4:32991991-32992010 | Msa1323950:CDS | 35.0% |
! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8_4:32991992-32992011 | Msa1323950:CDS | 35.0% |
! | GCAAAGAAAGAGTTGATTGA+TGG | - | chr8_4:32992529-32992548 | Msa1323950:intron | 35.0% |
! | AGAGTTGATTGATGGCTTAA+AGG | - | chr8_4:32992537-32992556 | Msa1323950:intron | 35.0% |
AAGGAATTAGAGAATGTGCT+TGG | - | chr8_4:32992556-32992575 | Msa1323950:intron | 35.0% | |
AATGTGTCACCACCAAAATA+AGG | + | chr8_4:32992589-32992608 | None:intergenic | 35.0% | |
!!! | TATTTTGGTGGTGACACATT+TGG | - | chr8_4:32992589-32992608 | Msa1323950:intron | 35.0% |
!!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8_4:32992590-32992609 | Msa1323950:intron | 35.0% |
CTTTGATCCCTTTCTATAGT+TGG | - | chr8_4:32992626-32992645 | Msa1323950:intron | 35.0% | |
ATTATGCAACTTCAAAGTGG+AGG | - | chr8_4:32992666-32992685 | Msa1323950:intron | 35.0% | |
AGTGTGATAAACTGATTGCT+TGG | - | chr8_4:32992692-32992711 | Msa1323950:intron | 35.0% | |
GTGTGATAAACTGATTGCTT+GGG | - | chr8_4:32992693-32992712 | Msa1323950:intron | 35.0% | |
! | TTGTTGTTGACTATAGGAAG+AGG | - | chr8_4:32992782-32992801 | Msa1323950:CDS | 35.0% |
CTATAGGAAGAGGTTTGATT+TGG | - | chr8_4:32992792-32992811 | Msa1323950:CDS | 35.0% | |
! | TTTAGGATCTGAGTACAGAT+TGG | + | chr8_4:32993044-32993063 | None:intergenic | 35.0% |
TAGTACCTGATTTAACTACG+AGG | - | chr8_4:32993067-32993086 | Msa1323950:five_prime_UTR | 35.0% | |
GTATGTTTGGTATGAGAGCA+AGG | - | chr8_4:32991757-32991776 | Msa1323950:three_prime_UTR | 40.0% | |
TATGAGAGCAAGGATAGCAT+TGG | - | chr8_4:32991767-32991786 | Msa1323950:three_prime_UTR | 40.0% | |
!! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_4:32991777-32991796 | Msa1323950:three_prime_UTR | 40.0% |
!! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_4:32991778-32991797 | Msa1323950:three_prime_UTR | 40.0% |
TGATGAGGTTTGGAAGGATA+AGG | - | chr8_4:32991941-32991960 | Msa1323950:three_prime_UTR | 40.0% | |
GCTTTCTCATAAGGATCTGA+GGG | + | chr8_4:32991978-32991997 | None:intergenic | 40.0% | |
AGCTTTCTCATAAGGATCTG+AGG | + | chr8_4:32991979-32991998 | None:intergenic | 40.0% | |
CTTGCTTGAGCTTTCTCATA+AGG | + | chr8_4:32991987-32992006 | None:intergenic | 40.0% | |
!! | GGCTGATTTTGTCAACAAGA+AGG | - | chr8_4:32992013-32992032 | Msa1323950:CDS | 40.0% |
CATATCTCACTAGGAAGGAA+AGG | + | chr8_4:32992309-32992328 | None:intergenic | 40.0% | |
!! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8_4:32992466-32992485 | Msa1323950:intron | 40.0% |
!! | CTTGGAGACCAACCTTATTT+TGG | - | chr8_4:32992574-32992593 | Msa1323950:intron | 40.0% |
TGTCACCACCAAAATAAGGT+TGG | + | chr8_4:32992585-32992604 | None:intergenic | 40.0% | |
CAGTGTTTCCAAATCTGTTG+CGG | - | chr8_4:32992738-32992757 | Msa1323950:intron | 40.0% | |
TTTCTCATCCGCAACAGATT+TGG | + | chr8_4:32992749-32992768 | None:intergenic | 40.0% | |
TTTGGACTGAGAAGACACTT+TGG | - | chr8_4:32992810-32992829 | Msa1323950:CDS | 40.0% | |
! | GACACTTTGGACTCTAAGAA+TGG | - | chr8_4:32992823-32992842 | Msa1323950:CDS | 40.0% |
TTCCTTCCTTTGTTGCTATG+TGG | - | chr8_4:32993006-32993025 | Msa1323950:CDS | 40.0% | |
AACCACATAGCAACAAAGGA+AGG | + | chr8_4:32993011-32993030 | None:intergenic | 40.0% | |
TTGGAACCACATAGCAACAA+AGG | + | chr8_4:32993015-32993034 | None:intergenic | 40.0% | |
TACCTGATTTAACTACGAGG+AGG | - | chr8_4:32993070-32993089 | Msa1323950:five_prime_UTR | 40.0% | |
GTATGTTTGGTATGAGAGCA+AGG | - | chr8_4:32991757-32991776 | Msa1323950:three_prime_UTR | 40.0% | |
TATGAGAGCAAGGATAGCAT+TGG | - | chr8_4:32991767-32991786 | Msa1323950:three_prime_UTR | 40.0% | |
!! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_4:32991777-32991796 | Msa1323950:three_prime_UTR | 40.0% |
!! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_4:32991778-32991797 | Msa1323950:three_prime_UTR | 40.0% |
TGATGAGGTTTGGAAGGATA+AGG | - | chr8_4:32991941-32991960 | Msa1323950:three_prime_UTR | 40.0% | |
GCTTTCTCATAAGGATCTGA+GGG | + | chr8_4:32991978-32991997 | None:intergenic | 40.0% | |
AGCTTTCTCATAAGGATCTG+AGG | + | chr8_4:32991979-32991998 | None:intergenic | 40.0% | |
CTTGCTTGAGCTTTCTCATA+AGG | + | chr8_4:32991987-32992006 | None:intergenic | 40.0% | |
!! | GGCTGATTTTGTCAACAAGA+AGG | - | chr8_4:32992013-32992032 | Msa1323950:CDS | 40.0% |
CATATCTCACTAGGAAGGAA+AGG | + | chr8_4:32992309-32992328 | None:intergenic | 40.0% | |
!! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8_4:32992466-32992485 | Msa1323950:intron | 40.0% |
!! | CTTGGAGACCAACCTTATTT+TGG | - | chr8_4:32992574-32992593 | Msa1323950:intron | 40.0% |
TGTCACCACCAAAATAAGGT+TGG | + | chr8_4:32992585-32992604 | None:intergenic | 40.0% | |
CAGTGTTTCCAAATCTGTTG+CGG | - | chr8_4:32992738-32992757 | Msa1323950:intron | 40.0% | |
TTTCTCATCCGCAACAGATT+TGG | + | chr8_4:32992749-32992768 | None:intergenic | 40.0% | |
TTTGGACTGAGAAGACACTT+TGG | - | chr8_4:32992810-32992829 | Msa1323950:CDS | 40.0% | |
! | GACACTTTGGACTCTAAGAA+TGG | - | chr8_4:32992823-32992842 | Msa1323950:CDS | 40.0% |
TTCCTTCCTTTGTTGCTATG+TGG | - | chr8_4:32993006-32993025 | Msa1323950:CDS | 40.0% | |
AACCACATAGCAACAAAGGA+AGG | + | chr8_4:32993011-32993030 | None:intergenic | 40.0% | |
TTGGAACCACATAGCAACAA+AGG | + | chr8_4:32993015-32993034 | None:intergenic | 40.0% | |
TACCTGATTTAACTACGAGG+AGG | - | chr8_4:32993070-32993089 | Msa1323950:five_prime_UTR | 40.0% | |
TGATGTTGGAGGGAGGATAT+GGG | - | chr8_4:32992480-32992499 | Msa1323950:intron | 45.0% | |
!!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8_4:32992577-32992596 | Msa1323950:intron | 45.0% |
GGTTGCTCCTATTAGTGCTT+TGG | - | chr8_4:32992880-32992899 | Msa1323950:CDS | 45.0% | |
GAGTACAGATTGGAGGTGAT+TGG | + | chr8_4:32993034-32993053 | None:intergenic | 45.0% | |
AGGATCTGAGTACAGATTGG+AGG | + | chr8_4:32993041-32993060 | None:intergenic | 45.0% | |
CTCCTCCTCGTAGTTAAATC+AGG | + | chr8_4:32993075-32993094 | None:intergenic | 45.0% | |
TGATGTTGGAGGGAGGATAT+GGG | - | chr8_4:32992480-32992499 | Msa1323950:intron | 45.0% | |
!!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8_4:32992577-32992596 | Msa1323950:intron | 45.0% |
GGTTGCTCCTATTAGTGCTT+TGG | - | chr8_4:32992880-32992899 | Msa1323950:CDS | 45.0% | |
GAGTACAGATTGGAGGTGAT+TGG | + | chr8_4:32993034-32993053 | None:intergenic | 45.0% | |
AGGATCTGAGTACAGATTGG+AGG | + | chr8_4:32993041-32993060 | None:intergenic | 45.0% | |
CTCCTCCTCGTAGTTAAATC+AGG | + | chr8_4:32993075-32993094 | None:intergenic | 45.0% | |
!! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8_4:32992469-32992488 | Msa1323950:intron | 50.0% |
!! | TGCAGGTTGGTGATGTTGGA+GGG | - | chr8_4:32992470-32992489 | Msa1323950:intron | 50.0% |
GTGATGTTGGAGGGAGGATA+TGG | - | chr8_4:32992479-32992498 | Msa1323950:intron | 50.0% | |
!! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8_4:32992469-32992488 | Msa1323950:intron | 50.0% |
!! | TGCAGGTTGGTGATGTTGGA+GGG | - | chr8_4:32992470-32992489 | Msa1323950:intron | 50.0% |
GTGATGTTGGAGGGAGGATA+TGG | - | chr8_4:32992479-32992498 | Msa1323950:intron | 50.0% | |
!! | AGGTTGGTGATGTTGGAGGG+AGG | - | chr8_4:32992473-32992492 | Msa1323950:intron | 55.0% |
!! | AGGTTGGTGATGTTGGAGGG+AGG | - | chr8_4:32992473-32992492 | Msa1323950:intron | 55.0% |
GTTGGAGGGAGGATATGGGC+TGG | - | chr8_4:32992484-32992503 | Msa1323950:intron | 60.0% | |
GTTGGAGGGAGGATATGGGC+TGG | - | chr8_4:32992484-32992503 | Msa1323950:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 32991630 | 32993150 | 32991630 | ID=Msa1323950;Name=Msa1323950 |
chr8_4 | mRNA | 32991630 | 32993150 | 32991630 | ID=Msa1323950-mRNA-1;Parent=Msa1323950;Name=Msa1323950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=90|1|1|1|1|1|2|331|219 |
chr8_4 | exon | 32991630 | 32992305 | 32991630 | ID=Msa1323950-mRNA-1:exon:10721;Parent=Msa1323950-mRNA-1 |
chr8_4 | exon | 32992746 | 32993150 | 32992746 | ID=Msa1323950-mRNA-1:exon:10720;Parent=Msa1323950-mRNA-1 |
chr8_4 | five_prime_UTR | 32993061 | 32993150 | 32993061 | ID=Msa1323950-mRNA-1:five_prime_utr;Parent=Msa1323950-mRNA-1 |
chr8_4 | CDS | 32992746 | 32993060 | 32992746 | ID=Msa1323950-mRNA-1:cds;Parent=Msa1323950-mRNA-1 |
chr8_4 | CDS | 32991961 | 32992305 | 32991961 | ID=Msa1323950-mRNA-1:cds;Parent=Msa1323950-mRNA-1 |
chr8_4 | three_prime_UTR | 32991630 | 32991960 | 32991630 | ID=Msa1323950-mRNA-1:three_prime_utr;Parent=Msa1323950-mRNA-1 |
Gene Sequence |
Protein sequence |