AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323950 MtrunA17_Chr8g0357241 94.064 219 13 0 1 219 1 219 8.77e-153 422
Msa1323950 MtrunA17_Chr8g0357211 94.064 219 13 0 1 219 1 219 2.81e-152 421
Msa1323950 MtrunA17_Chr2g0312681 67.123 219 72 0 1 219 1 219 1.09e-107 308
Msa1323950 MtrunA17_Chr2g0312771 64.840 219 77 0 1 219 1 219 2.02e-104 300
Msa1323950 MtrunA17_Chr2g0312691 65.753 219 75 0 1 219 1 219 3.69e-104 300
Msa1323950 MtrunA17_Chr2g0312751 65.297 219 76 0 1 219 1 219 4.17e-104 299
Msa1323950 MtrunA17_Chr2g0312781 64.953 214 75 0 1 214 18 231 1.30e-101 293
Msa1323950 MtrunA17_Chr2g0312711 63.014 219 80 1 1 219 1 218 4.62e-97 281
Msa1323950 MtrunA17_Chr2g0312731 59.361 219 89 0 1 219 1 219 1.76e-96 280
Msa1323950 MtrunA17_Chr2g0312791 60.909 220 84 2 1 218 1 220 7.55e-94 273
Msa1323950 MtrunA17_Chr2g0312811 60.185 216 84 1 1 214 1 216 2.50e-92 270
Msa1323950 MtrunA17_Chr3g0107731 54.884 215 97 0 5 219 10 224 9.32e-92 268
Msa1323950 MtrunA17_Chr3g0107741 54.378 217 99 0 3 219 8 224 1.20e-90 265
Msa1323950 MtrunA17_Chr2g0312721 55.869 213 94 0 1 213 1 213 8.52e-84 248
Msa1323950 MtrunA17_Chr4g0069471 65.027 183 61 2 1 182 22 202 2.51e-82 243
Msa1323950 MtrunA17_Chr5g0433801 50.935 214 103 2 2 214 4 216 2.12e-71 216
Msa1323950 MtrunA17_Chr1g0196661 39.901 203 117 3 11 209 10 211 6.32e-44 147
Msa1323950 MtrunA17_Chr4g0029341 39.906 213 123 3 1 209 1 212 1.51e-43 145
Msa1323950 MtrunA17_Chr7g0240681 38.636 220 128 5 3 217 6 223 2.03e-43 145
Msa1323950 MtrunA17_Chr5g0415411 44.949 198 94 6 2 187 3 197 4.08e-43 144
Msa1323950 MtrunA17_Chr5g0417011 34.597 211 131 2 2 205 5 215 6.51e-43 144
Msa1323950 MtrunA17_Chr4g0008781 37.799 209 125 4 3 208 7 213 1.29e-42 143
Msa1323950 MtrunA17_Chr7g0240641 38.756 209 123 4 3 208 6 212 5.94e-42 141
Msa1323950 MtrunA17_Chr8g0379581 35.484 217 137 2 2 216 3 218 7.17e-42 141
Msa1323950 MtrunA17_Chr7g0240691 39.726 219 123 5 3 217 36 249 7.47e-42 142
Msa1323950 MtrunA17_Chr7g0240631 37.321 209 126 4 3 208 6 212 1.47e-41 140
Msa1323950 MtrunA17_Chr3g0132581 45.455 176 94 2 1 175 1 175 2.17e-41 140
Msa1323950 MtrunA17_Chr7g0240611 44.624 186 98 5 3 187 6 187 4.45e-41 139
Msa1323950 MtrunA17_Chr4g0008791 38.942 208 122 4 4 208 7 212 1.61e-40 138
Msa1323950 MtrunA17_Chr1g0196721 41.089 202 114 3 11 208 9 209 1.43e-39 135
Msa1323950 MtrunA17_Chr1g0196691 38.605 215 118 5 4 209 28 237 1.53e-38 133
Msa1323950 MtrunA17_Chr7g0240671 46.061 165 84 4 1 162 1 163 3.77e-38 132
Msa1323950 MtrunA17_Chr8g0379561 39.779 181 106 2 7 185 9 188 5.32e-38 131
Msa1323950 MtrunA17_Chr7g0240531 38.756 209 118 6 13 217 16 218 8.40e-38 131
Msa1323950 MtrunA17_Chr1g0196711 40.594 202 115 4 11 208 10 210 9.30e-38 130
Msa1323950 MtrunA17_Chr8g0363751 40.404 198 109 5 7 195 8 205 1.14e-37 130
Msa1323950 MtrunA17_Chr7g0240541 37.500 208 122 5 13 217 16 218 2.46e-37 129
Msa1323950 MtrunA17_Chr7g0240561 38.806 201 116 5 3 199 6 203 3.70e-37 129
Msa1323950 MtrunA17_Chr7g0240511 38.942 208 114 7 13 217 16 213 2.47e-36 127
Msa1323950 MtrunA17_Chr6g0483141 37.864 206 118 5 18 216 17 219 6.07e-36 126
Msa1323950 MtrunA17_Chr1g0196771 36.019 211 127 5 11 216 10 217 1.60e-35 125
Msa1323950 MtrunA17_Chr7g0240551 36.538 208 124 5 13 217 16 218 1.64e-35 125
Msa1323950 MtrunA17_Chr1g0212301 38.119 202 115 4 7 201 6 204 2.05e-35 124
Msa1323950 MtrunA17_Chr7g0240651 45.679 162 83 4 3 161 6 165 5.14e-35 124
Msa1323950 MtrunA17_Chr7g0240581 40.212 189 106 5 3 187 6 191 7.27e-34 120
Msa1323950 MtrunA17_Chr7g0240661 37.799 209 121 5 3 208 6 208 5.90e-33 118
Msa1323950 MtrunA17_Chr7g0240521 37.234 188 113 4 3 187 13 198 2.93e-31 114
Msa1323950 MtrunA17_Chr8g0391631 42.105 152 81 4 7 151 24 175 3.29e-31 112
Msa1323950 MtrunA17_Chr2g0313561 66.667 72 24 0 47 118 1 72 4.53e-30 106
Msa1323950 MtrunA17_Chr7g0263221 29.108 213 133 8 10 216 32 232 2.97e-13 66.6
Msa1323950 MtrunA17_Chr5g0415421 45.205 73 38 1 28 98 11 83 3.47e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323950 AT1G78380.1 63.889 216 78 0 1 216 1 216 2.57e-99 288
Msa1323950 AT1G78370.1 60.000 215 86 0 1 215 1 215 1.08e-96 281
Msa1323950 AT1G17170.1 60.731 219 85 1 1 219 1 218 7.15e-96 279
Msa1323950 AT1G17180.1 59.817 219 88 0 1 219 1 219 7.92e-96 279
Msa1323950 AT1G78340.1 61.215 214 83 0 1 214 1 214 1.27e-94 276
Msa1323950 AT1G78360.1 60.000 220 87 1 1 219 1 220 2.74e-94 275
Msa1323950 AT1G78320.1 59.813 214 86 0 1 214 1 214 3.07e-89 262
Msa1323950 AT1G17190.1 55.140 214 96 0 3 216 4 217 1.47e-85 253
Msa1323950 AT1G53680.1 52.995 217 100 2 5 219 8 224 1.86e-83 248
Msa1323950 AT3G43800.1 53.774 212 94 3 3 210 4 215 3.02e-74 224
Msa1323950 AT1G78320.2 50.935 214 78 1 1 214 1 187 1.49e-68 209
Msa1323950 AT3G09270.1 46.809 188 97 2 3 187 5 192 4.29e-47 155
Msa1323950 AT2G29420.1 39.048 210 125 2 2 209 7 215 8.57e-47 154
Msa1323950 AT1G10360.1 42.051 195 105 4 2 188 3 197 4.76e-43 145
Msa1323950 AT1G74590.1 34.545 220 132 4 5 215 8 224 5.71e-43 145
Msa1323950 AT1G10370.1 38.863 211 121 4 7 209 8 218 6.94e-43 144
Msa1323950 AT1G59670.1 40.090 222 124 5 3 215 5 226 2.32e-41 140
Msa1323950 AT2G29460.1 40.291 206 117 4 3 204 6 209 3.42e-41 140
Msa1323950 AT1G59700.1 39.462 223 124 6 3 215 5 226 1.11e-40 139
Msa1323950 AT2G29480.1 44.720 161 85 2 3 160 6 165 2.27e-40 138
Msa1323950 AT2G29490.1 45.342 161 84 2 3 160 6 165 2.28e-40 138
Msa1323950 AT2G29450.1 48.466 163 77 4 3 160 5 165 4.21e-40 137
Msa1323950 AT2G29440.1 47.273 165 75 4 3 160 5 164 5.73e-40 137
Msa1323950 AT1G27140.1 39.512 205 114 4 15 209 17 221 1.36e-39 136
Msa1323950 AT1G27130.1 35.747 221 130 5 7 218 9 226 5.04e-39 134
Msa1323950 AT2G29470.1 39.000 200 115 5 7 201 10 207 5.26e-39 134
Msa1323950 AT5G62480.1 36.872 179 105 1 5 175 9 187 5.53e-38 132
Msa1323950 AT1G69920.1 35.426 223 128 6 7 218 37 254 1.20e-36 129
Msa1323950 AT1G69930.1 34.762 210 130 3 7 209 15 224 1.14e-34 123
Msa1323950 AT5G62480.3 28.492 179 93 2 5 175 9 160 1.57e-20 86.3
Msa1323950 AT5G62480.2 28.492 179 94 2 5 175 9 161 2.06e-20 85.9

Find 65 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGCTCAAGCAAGATTT+TGG 0.160142 8_4:-32992767 Msa1323950:CDS
ATGATGATGGATTCACAAAT+TGG 0.232208 8_4:+32992852 None:intergenic
AGGATAGCATTGGCTGAAAA+AGG 0.234872 8_4:-32992981 Msa1323950:CDS
GAAATGTAAACTAAACAATT+TGG 0.242177 8_4:-32991899 Msa1323950:three_prime_UTR
CTTGGAGACCAACCTTATTT+TGG 0.247910 8_4:-32992184 Msa1323950:CDS
TTGAAAAGAACAAGGCTTTC+AGG 0.250379 8_4:+32993090 None:intergenic
GTGATGTTGGAGGGAGGATA+TGG 0.264890 8_4:-32992279 Msa1323950:CDS
TTTCTCATCCGCAACAGATT+TGG 0.278908 8_4:+32992012 None:intergenic
ACTGGAATCTTCTTGTGAAT+TGG 0.280000 8_4:+32992894 None:intergenic
CTTTGATCCCTTTCTATAGT+TGG 0.290757 8_4:-32992132 Msa1323950:CDS
CTATAGGAAGAGGTTTGATT+TGG 0.319582 8_4:-32991966 Msa1323950:CDS
GATGAATGGCTTAGTATGTT+TGG 0.324709 8_4:-32993014 Msa1323950:CDS
CATTATACATATAACATATA+TGG 0.336167 8_4:+32991663 None:intergenic
AGAGTTGATTGATGGCTTAA+AGG 0.336739 8_4:-32992221 Msa1323950:CDS
GATTCATTTGCAAAAGCATT+TGG 0.343663 8_4:+32992916 None:intergenic
GGTTGCTCCTATTAGTGCTT+TGG 0.353192 8_4:-32991878 Msa1323950:three_prime_UTR
CTTGCTTGAGCTTTCTCATA+AGG 0.355050 8_4:+32992774 None:intergenic
GCAAAGAAAGAGTTGATTGA+TGG 0.384134 8_4:-32992229 Msa1323950:CDS
TATTTGACCAAAGCACTAAT+AGG 0.392230 8_4:+32991871 None:intergenic
TATGTATAATGTATTTATGT+AGG 0.399343 8_4:-32991651 Msa1323950:three_prime_UTR
TTTCCCTTATGGATAAGAAC+TGG 0.413273 8_4:+32992876 None:intergenic
AAAGAGAGATGAGATTGAAT+TGG 0.418834 8_4:-32992251 Msa1323950:CDS
CTCCTCCTCGTAGTTAAATC+AGG 0.426001 8_4:+32991686 None:intergenic
GATTCCAGTTCTTATCCATA+AGG 0.427078 8_4:-32992880 Msa1323950:CDS
TTGAGTATATTGATGAGGTT+TGG 0.428745 8_4:-32992827 Msa1323950:CDS
AGTTAATATTGTTAGATGAA+TGG 0.437571 8_4:-32993028 Msa1323950:CDS
AATGTGTCACCACCAAAATA+AGG 0.439985 8_4:+32992172 None:intergenic
TGATGAGGTTTGGAAGGATA+AGG 0.440755 8_4:-32992817 Msa1323950:CDS
TTTAGGATCTGAGTACAGAT+TGG 0.455192 8_4:+32991717 None:intergenic
TTCCTTCCTTTGTTGCTATG+TGG 0.458672 8_4:-32991752 Msa1323950:three_prime_UTR
ATTCCAGTTCTTATCCATAA+GGG 0.462545 8_4:-32992879 Msa1323950:CDS
TGATGTTGGAGGGAGGATAT+GGG 0.462736 8_4:-32992278 Msa1323950:CDS
TTTGGACTGAGAAGACACTT+TGG 0.480983 8_4:-32991948 Msa1323950:exon
AAAATGCAGGTTGGTGATGT+TGG 0.481244 8_4:-32992292 Msa1323950:intron
TATAAAACCAACTATAGAAA+GGG 0.488530 8_4:+32992125 None:intergenic
AATATACTCAACAATGATGA+TGG 0.489877 8_4:+32992839 None:intergenic
GAGTACAGATTGGAGGTGAT+TGG 0.492012 8_4:+32991727 None:intergenic
AAGGAATTAGAGAATGTGCT+TGG 0.497037 8_4:-32992202 Msa1323950:CDS
GTATAAAACCAACTATAGAA+AGG 0.503827 8_4:+32992124 None:intergenic
AATATTAACTCCTCTGCCAT+TGG 0.514154 8_4:+32993041 None:intergenic
AGGGATTAAGTATGAGTACA+AGG 0.524364 8_4:-32992961 Msa1323950:CDS
AGGATCTGAGTACAGATTGG+AGG 0.533882 8_4:+32991720 None:intergenic
AGCTTTCTCATAAGGATCTG+AGG 0.541397 8_4:+32992782 None:intergenic
GACACTTTGGACTCTAAGAA+TGG 0.544103 8_4:-32991935 Msa1323950:three_prime_UTR
GTATATTGATGAGGTTTGGA+AGG 0.548215 8_4:-32992823 Msa1323950:CDS
TGCAGGTTGGTGATGTTGGA+GGG 0.552099 8_4:-32992288 Msa1323950:intron
TTGTTGTTGACTATAGGAAG+AGG 0.553068 8_4:-32991976 Msa1323950:CDS
AGTGTGATAAACTGATTGCT+TGG 0.559583 8_4:-32992066 Msa1323950:CDS
GTATGTTTGGTATGAGAGCA+AGG 0.566057 8_4:-32993001 Msa1323950:CDS
GTGTGATAAACTGATTGCTT+GGG 0.572223 8_4:-32992065 Msa1323950:CDS
CAGTGTTTCCAAATCTGTTG+CGG 0.573601 8_4:-32992020 Msa1323950:CDS
GCTTTCTCATAAGGATCTGA+GGG 0.584199 8_4:+32992783 None:intergenic
ATGCAGGTTGGTGATGTTGG+AGG 0.585807 8_4:-32992289 Msa1323950:intron
GTTGGAGGGAGGATATGGGC+TGG 0.592056 8_4:-32992274 Msa1323950:CDS
CATTGTTGAGTATATTGATG+AGG 0.596226 8_4:-32992832 Msa1323950:CDS
TATGAGAGCAAGGATAGCAT+TGG 0.605598 8_4:-32992991 Msa1323950:CDS
AACCACATAGCAACAAAGGA+AGG 0.613591 8_4:+32991750 None:intergenic
TGTCACCACCAAAATAAGGT+TGG 0.621870 8_4:+32992176 None:intergenic
GAAATTATGCAACTTCAAAG+TGG 0.628741 8_4:-32992095 Msa1323950:CDS
TGAAAGATTTGAAAAGAACA+AGG 0.634058 8_4:+32993082 None:intergenic
ATTATGCAACTTCAAAGTGG+AGG 0.642784 8_4:-32992092 Msa1323950:CDS
TTGGAACCACATAGCAACAA+AGG 0.650782 8_4:+32991746 None:intergenic
AGGTTGGTGATGTTGGAGGG+AGG 0.678043 8_4:-32992285 Msa1323950:CDS
TACCTGATTTAACTACGAGG+AGG 0.709862 8_4:-32991688 Msa1323950:three_prime_UTR
TAGTACCTGATTTAACTACG+AGG 0.819381 8_4:-32991691 Msa1323950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATATGGTAAAAACTT+TGG + chr8_4:32992055-32992074 None:intergenic 15.0%
!! TAATGAATTAAATAACATGA+TGG - chr8_4:32992190-32992209 Msa1323950:CDS 15.0%
!! TTAATATGTTAAAAAAATGC+AGG - chr8_4:32992453-32992472 Msa1323950:intron 15.0%
!! AAAATTTACACTTGAAAAAT+TGG - chr8_4:32992980-32992999 Msa1323950:CDS 15.0%
!! AAATTTACACTTGAAAAATT+GGG - chr8_4:32992981-32993000 Msa1323950:CDS 15.0%
!! CATTATACATATAACATATA+TGG + chr8_4:32993098-32993117 None:intergenic 15.0%
!! TATGTATAATGTATTTATGT+AGG - chr8_4:32993107-32993126 Msa1323950:five_prime_UTR 15.0%
!! TAAAAATATGGTAAAAACTT+TGG + chr8_4:32992055-32992074 None:intergenic 15.0%
!! TAATGAATTAAATAACATGA+TGG - chr8_4:32992190-32992209 Msa1323950:CDS 15.0%
!! TTAATATGTTAAAAAAATGC+AGG - chr8_4:32992453-32992472 Msa1323950:intron 15.0%
!! AAAATTTACACTTGAAAAAT+TGG - chr8_4:32992980-32992999 Msa1323950:CDS 15.0%
!! AAATTTACACTTGAAAAATT+GGG - chr8_4:32992981-32993000 Msa1323950:CDS 15.0%
!! CATTATACATATAACATATA+TGG + chr8_4:32993098-32993117 None:intergenic 15.0%
!! TATGTATAATGTATTTATGT+AGG - chr8_4:32993107-32993126 Msa1323950:five_prime_UTR 15.0%
!! AGTTAATATTGTTAGATGAA+TGG - chr8_4:32991730-32991749 Msa1323950:three_prime_UTR 20.0%
!! AGAGAAAACAATAAAAAAGA+AGG + chr8_4:32992219-32992238 None:intergenic 20.0%
!!! TTGTTTTCTCTAATATTCAA+TGG - chr8_4:32992228-32992247 Msa1323950:CDS 20.0%
!! TATCCATATTATTAAAGACT+AGG - chr8_4:32992388-32992407 Msa1323950:intron 20.0%
!! TATAAAACCAACTATAGAAA+GGG + chr8_4:32992636-32992655 None:intergenic 20.0%
!! GAAATGTAAACTAAACAATT+TGG - chr8_4:32992859-32992878 Msa1323950:CDS 20.0%
!! AGTTAATATTGTTAGATGAA+TGG - chr8_4:32991730-32991749 Msa1323950:three_prime_UTR 20.0%
!! AGAGAAAACAATAAAAAAGA+AGG + chr8_4:32992219-32992238 None:intergenic 20.0%
!!! TTGTTTTCTCTAATATTCAA+TGG - chr8_4:32992228-32992247 Msa1323950:CDS 20.0%
!! TATCCATATTATTAAAGACT+AGG - chr8_4:32992388-32992407 Msa1323950:intron 20.0%
!! TATAAAACCAACTATAGAAA+GGG + chr8_4:32992636-32992655 None:intergenic 20.0%
!! GAAATGTAAACTAAACAATT+TGG - chr8_4:32992859-32992878 Msa1323950:CDS 20.0%
! TGAAAGATTTGAAAAGAACA+AGG + chr8_4:32991679-32991698 None:intergenic 25.0%
! AATATACTCAACAATGATGA+TGG + chr8_4:32991922-32991941 None:intergenic 25.0%
!! ATTTTTACTTATTTCCTGCT+AGG + chr8_4:32992078-32992097 None:intergenic 25.0%
!!! GTATTGTTTTTGCTTTTGAA+TGG - chr8_4:32992155-32992174 Msa1323950:CDS 25.0%
! TTTCTCTAATATTCAATGGA+TGG - chr8_4:32992232-32992251 Msa1323950:CDS 25.0%
! TACTATATTCATATCTCACT+AGG + chr8_4:32992318-32992337 None:intergenic 25.0%
! CTTCATATTTCATCAATGAA+TGG - chr8_4:32992344-32992363 Msa1323950:intron 25.0%
! GGATTTATCATTCATCTTAT+TGG - chr8_4:32992365-32992384 Msa1323950:intron 25.0%
!! CAACCTAGTCTTTAATAATA+TGG + chr8_4:32992394-32992413 None:intergenic 25.0%
! TATGTTAAAAAAATGCAGGT+TGG - chr8_4:32992457-32992476 Msa1323950:intron 25.0%
! GTATAAAACCAACTATAGAA+AGG + chr8_4:32992637-32992656 None:intergenic 25.0%
!!! ATGATTTTGTTGTTGACTAT+AGG - chr8_4:32992776-32992795 Msa1323950:CDS 25.0%
!! TAAGAATGGTATTGTTTTCT+TGG - chr8_4:32992837-32992856 Msa1323950:CDS 25.0%
!! TAAATCAGGTACTATGTTTT+AGG + chr8_4:32993061-32993080 None:intergenic 25.0%
! TGAAAGATTTGAAAAGAACA+AGG + chr8_4:32991679-32991698 None:intergenic 25.0%
! AATATACTCAACAATGATGA+TGG + chr8_4:32991922-32991941 None:intergenic 25.0%
!! ATTTTTACTTATTTCCTGCT+AGG + chr8_4:32992078-32992097 None:intergenic 25.0%
!!! GTATTGTTTTTGCTTTTGAA+TGG - chr8_4:32992155-32992174 Msa1323950:CDS 25.0%
! TTTCTCTAATATTCAATGGA+TGG - chr8_4:32992232-32992251 Msa1323950:CDS 25.0%
! TACTATATTCATATCTCACT+AGG + chr8_4:32992318-32992337 None:intergenic 25.0%
! CTTCATATTTCATCAATGAA+TGG - chr8_4:32992344-32992363 Msa1323950:intron 25.0%
! GGATTTATCATTCATCTTAT+TGG - chr8_4:32992365-32992384 Msa1323950:intron 25.0%
!! CAACCTAGTCTTTAATAATA+TGG + chr8_4:32992394-32992413 None:intergenic 25.0%
! TATGTTAAAAAAATGCAGGT+TGG - chr8_4:32992457-32992476 Msa1323950:intron 25.0%
! GTATAAAACCAACTATAGAA+AGG + chr8_4:32992637-32992656 None:intergenic 25.0%
!!! ATGATTTTGTTGTTGACTAT+AGG - chr8_4:32992776-32992795 Msa1323950:CDS 25.0%
!! TAAGAATGGTATTGTTTTCT+TGG - chr8_4:32992837-32992856 Msa1323950:CDS 25.0%
!! TAAATCAGGTACTATGTTTT+AGG + chr8_4:32993061-32993080 None:intergenic 25.0%
!!! TCTGTGATTGTTTTTACCAA+TGG - chr8_4:32991701-32991720 Msa1323950:three_prime_UTR 30.0%
!! GATTCATTTGCAAAAGCATT+TGG + chr8_4:32991845-32991864 None:intergenic 30.0%
ATTCCAGTTCTTATCCATAA+GGG - chr8_4:32991879-32991898 Msa1323950:three_prime_UTR 30.0%
!! ATGATGATGGATTCACAAAT+TGG + chr8_4:32991909-32991928 None:intergenic 30.0%
CATTGTTGAGTATATTGATG+AGG - chr8_4:32991926-32991945 Msa1323950:three_prime_UTR 30.0%
TTGAGTATATTGATGAGGTT+TGG - chr8_4:32991931-32991950 Msa1323950:three_prime_UTR 30.0%
!!! ACAAGAAGGTAAGTTTTGTT+AGG - chr8_4:32992027-32992046 Msa1323950:CDS 30.0%
!! TTACCATATTTTTACCTAGC+AGG - chr8_4:32992061-32992080 Msa1323950:CDS 30.0%
TTTCCTGCTAGGTAAAAATA+TGG + chr8_4:32992067-32992086 None:intergenic 30.0%
ATATTCATATCTCACTAGGA+AGG + chr8_4:32992314-32992333 None:intergenic 30.0%
AAAGAGAGATGAGATTGAAT+TGG - chr8_4:32992507-32992526 Msa1323950:intron 30.0%
GAAATTATGCAACTTCAAAG+TGG - chr8_4:32992663-32992682 Msa1323950:intron 30.0%
! TATTTGACCAAAGCACTAAT+AGG + chr8_4:32992890-32992909 None:intergenic 30.0%
! TATAGTTATGCAAGTTTTGC+AGG - chr8_4:32992938-32992957 Msa1323950:CDS 30.0%
!!! TCTGTGATTGTTTTTACCAA+TGG - chr8_4:32991701-32991720 Msa1323950:three_prime_UTR 30.0%
!! GATTCATTTGCAAAAGCATT+TGG + chr8_4:32991845-32991864 None:intergenic 30.0%
ATTCCAGTTCTTATCCATAA+GGG - chr8_4:32991879-32991898 Msa1323950:three_prime_UTR 30.0%
!! ATGATGATGGATTCACAAAT+TGG + chr8_4:32991909-32991928 None:intergenic 30.0%
CATTGTTGAGTATATTGATG+AGG - chr8_4:32991926-32991945 Msa1323950:three_prime_UTR 30.0%
TTGAGTATATTGATGAGGTT+TGG - chr8_4:32991931-32991950 Msa1323950:three_prime_UTR 30.0%
!!! ACAAGAAGGTAAGTTTTGTT+AGG - chr8_4:32992027-32992046 Msa1323950:CDS 30.0%
!! TTACCATATTTTTACCTAGC+AGG - chr8_4:32992061-32992080 Msa1323950:CDS 30.0%
TTTCCTGCTAGGTAAAAATA+TGG + chr8_4:32992067-32992086 None:intergenic 30.0%
ATATTCATATCTCACTAGGA+AGG + chr8_4:32992314-32992333 None:intergenic 30.0%
AAAGAGAGATGAGATTGAAT+TGG - chr8_4:32992507-32992526 Msa1323950:intron 30.0%
GAAATTATGCAACTTCAAAG+TGG - chr8_4:32992663-32992682 Msa1323950:intron 30.0%
! TATTTGACCAAAGCACTAAT+AGG + chr8_4:32992890-32992909 None:intergenic 30.0%
! TATAGTTATGCAAGTTTTGC+AGG - chr8_4:32992938-32992957 Msa1323950:CDS 30.0%
TTGAAAAGAACAAGGCTTTC+AGG + chr8_4:32991671-32991690 None:intergenic 35.0%
!!! ATTGTTTTTACCAATGGCAG+AGG - chr8_4:32991707-32991726 Msa1323950:three_prime_UTR 35.0%
AATATTAACTCCTCTGCCAT+TGG + chr8_4:32991720-32991739 None:intergenic 35.0%
GATGAATGGCTTAGTATGTT+TGG - chr8_4:32991744-32991763 Msa1323950:three_prime_UTR 35.0%
AGGGATTAAGTATGAGTACA+AGG - chr8_4:32991797-32991816 Msa1323950:three_prime_UTR 35.0%
ACTGGAATCTTCTTGTGAAT+TGG + chr8_4:32991867-32991886 None:intergenic 35.0%
GATTCCAGTTCTTATCCATA+AGG - chr8_4:32991878-32991897 Msa1323950:three_prime_UTR 35.0%
TTTCCCTTATGGATAAGAAC+TGG + chr8_4:32991885-32991904 None:intergenic 35.0%
!!! CACAAATTGGTTTTCCCTTA+TGG + chr8_4:32991896-32991915 None:intergenic 35.0%
GTATATTGATGAGGTTTGGA+AGG - chr8_4:32991935-32991954 Msa1323950:three_prime_UTR 35.0%
! AGAAAGCTCAAGCAAGATTT+TGG - chr8_4:32991991-32992010 Msa1323950:CDS 35.0%
! GAAAGCTCAAGCAAGATTTT+GGG - chr8_4:32991992-32992011 Msa1323950:CDS 35.0%
! GCAAAGAAAGAGTTGATTGA+TGG - chr8_4:32992529-32992548 Msa1323950:intron 35.0%
! AGAGTTGATTGATGGCTTAA+AGG - chr8_4:32992537-32992556 Msa1323950:intron 35.0%
AAGGAATTAGAGAATGTGCT+TGG - chr8_4:32992556-32992575 Msa1323950:intron 35.0%
AATGTGTCACCACCAAAATA+AGG + chr8_4:32992589-32992608 None:intergenic 35.0%
!!! TATTTTGGTGGTGACACATT+TGG - chr8_4:32992589-32992608 Msa1323950:intron 35.0%
!!! ATTTTGGTGGTGACACATTT+GGG - chr8_4:32992590-32992609 Msa1323950:intron 35.0%
CTTTGATCCCTTTCTATAGT+TGG - chr8_4:32992626-32992645 Msa1323950:intron 35.0%
ATTATGCAACTTCAAAGTGG+AGG - chr8_4:32992666-32992685 Msa1323950:intron 35.0%
AGTGTGATAAACTGATTGCT+TGG - chr8_4:32992692-32992711 Msa1323950:intron 35.0%
GTGTGATAAACTGATTGCTT+GGG - chr8_4:32992693-32992712 Msa1323950:intron 35.0%
! TTGTTGTTGACTATAGGAAG+AGG - chr8_4:32992782-32992801 Msa1323950:CDS 35.0%
CTATAGGAAGAGGTTTGATT+TGG - chr8_4:32992792-32992811 Msa1323950:CDS 35.0%
! TTTAGGATCTGAGTACAGAT+TGG + chr8_4:32993044-32993063 None:intergenic 35.0%
TAGTACCTGATTTAACTACG+AGG - chr8_4:32993067-32993086 Msa1323950:five_prime_UTR 35.0%
TTGAAAAGAACAAGGCTTTC+AGG + chr8_4:32991671-32991690 None:intergenic 35.0%
!!! ATTGTTTTTACCAATGGCAG+AGG - chr8_4:32991707-32991726 Msa1323950:three_prime_UTR 35.0%
AATATTAACTCCTCTGCCAT+TGG + chr8_4:32991720-32991739 None:intergenic 35.0%
GATGAATGGCTTAGTATGTT+TGG - chr8_4:32991744-32991763 Msa1323950:three_prime_UTR 35.0%
AGGGATTAAGTATGAGTACA+AGG - chr8_4:32991797-32991816 Msa1323950:three_prime_UTR 35.0%
ACTGGAATCTTCTTGTGAAT+TGG + chr8_4:32991867-32991886 None:intergenic 35.0%
GATTCCAGTTCTTATCCATA+AGG - chr8_4:32991878-32991897 Msa1323950:three_prime_UTR 35.0%
TTTCCCTTATGGATAAGAAC+TGG + chr8_4:32991885-32991904 None:intergenic 35.0%
!!! CACAAATTGGTTTTCCCTTA+TGG + chr8_4:32991896-32991915 None:intergenic 35.0%
GTATATTGATGAGGTTTGGA+AGG - chr8_4:32991935-32991954 Msa1323950:three_prime_UTR 35.0%
! AGAAAGCTCAAGCAAGATTT+TGG - chr8_4:32991991-32992010 Msa1323950:CDS 35.0%
! GAAAGCTCAAGCAAGATTTT+GGG - chr8_4:32991992-32992011 Msa1323950:CDS 35.0%
! GCAAAGAAAGAGTTGATTGA+TGG - chr8_4:32992529-32992548 Msa1323950:intron 35.0%
! AGAGTTGATTGATGGCTTAA+AGG - chr8_4:32992537-32992556 Msa1323950:intron 35.0%
AAGGAATTAGAGAATGTGCT+TGG - chr8_4:32992556-32992575 Msa1323950:intron 35.0%
AATGTGTCACCACCAAAATA+AGG + chr8_4:32992589-32992608 None:intergenic 35.0%
!!! TATTTTGGTGGTGACACATT+TGG - chr8_4:32992589-32992608 Msa1323950:intron 35.0%
!!! ATTTTGGTGGTGACACATTT+GGG - chr8_4:32992590-32992609 Msa1323950:intron 35.0%
CTTTGATCCCTTTCTATAGT+TGG - chr8_4:32992626-32992645 Msa1323950:intron 35.0%
ATTATGCAACTTCAAAGTGG+AGG - chr8_4:32992666-32992685 Msa1323950:intron 35.0%
AGTGTGATAAACTGATTGCT+TGG - chr8_4:32992692-32992711 Msa1323950:intron 35.0%
GTGTGATAAACTGATTGCTT+GGG - chr8_4:32992693-32992712 Msa1323950:intron 35.0%
! TTGTTGTTGACTATAGGAAG+AGG - chr8_4:32992782-32992801 Msa1323950:CDS 35.0%
CTATAGGAAGAGGTTTGATT+TGG - chr8_4:32992792-32992811 Msa1323950:CDS 35.0%
! TTTAGGATCTGAGTACAGAT+TGG + chr8_4:32993044-32993063 None:intergenic 35.0%
TAGTACCTGATTTAACTACG+AGG - chr8_4:32993067-32993086 Msa1323950:five_prime_UTR 35.0%
GTATGTTTGGTATGAGAGCA+AGG - chr8_4:32991757-32991776 Msa1323950:three_prime_UTR 40.0%
TATGAGAGCAAGGATAGCAT+TGG - chr8_4:32991767-32991786 Msa1323950:three_prime_UTR 40.0%
!! AGGATAGCATTGGCTGAAAA+AGG - chr8_4:32991777-32991796 Msa1323950:three_prime_UTR 40.0%
!! GGATAGCATTGGCTGAAAAA+GGG - chr8_4:32991778-32991797 Msa1323950:three_prime_UTR 40.0%
TGATGAGGTTTGGAAGGATA+AGG - chr8_4:32991941-32991960 Msa1323950:three_prime_UTR 40.0%
GCTTTCTCATAAGGATCTGA+GGG + chr8_4:32991978-32991997 None:intergenic 40.0%
AGCTTTCTCATAAGGATCTG+AGG + chr8_4:32991979-32991998 None:intergenic 40.0%
CTTGCTTGAGCTTTCTCATA+AGG + chr8_4:32991987-32992006 None:intergenic 40.0%
!! GGCTGATTTTGTCAACAAGA+AGG - chr8_4:32992013-32992032 Msa1323950:CDS 40.0%
CATATCTCACTAGGAAGGAA+AGG + chr8_4:32992309-32992328 None:intergenic 40.0%
!! AAAATGCAGGTTGGTGATGT+TGG - chr8_4:32992466-32992485 Msa1323950:intron 40.0%
!! CTTGGAGACCAACCTTATTT+TGG - chr8_4:32992574-32992593 Msa1323950:intron 40.0%
TGTCACCACCAAAATAAGGT+TGG + chr8_4:32992585-32992604 None:intergenic 40.0%
CAGTGTTTCCAAATCTGTTG+CGG - chr8_4:32992738-32992757 Msa1323950:intron 40.0%
TTTCTCATCCGCAACAGATT+TGG + chr8_4:32992749-32992768 None:intergenic 40.0%
TTTGGACTGAGAAGACACTT+TGG - chr8_4:32992810-32992829 Msa1323950:CDS 40.0%
! GACACTTTGGACTCTAAGAA+TGG - chr8_4:32992823-32992842 Msa1323950:CDS 40.0%
TTCCTTCCTTTGTTGCTATG+TGG - chr8_4:32993006-32993025 Msa1323950:CDS 40.0%
AACCACATAGCAACAAAGGA+AGG + chr8_4:32993011-32993030 None:intergenic 40.0%
TTGGAACCACATAGCAACAA+AGG + chr8_4:32993015-32993034 None:intergenic 40.0%
TACCTGATTTAACTACGAGG+AGG - chr8_4:32993070-32993089 Msa1323950:five_prime_UTR 40.0%
GTATGTTTGGTATGAGAGCA+AGG - chr8_4:32991757-32991776 Msa1323950:three_prime_UTR 40.0%
TATGAGAGCAAGGATAGCAT+TGG - chr8_4:32991767-32991786 Msa1323950:three_prime_UTR 40.0%
!! AGGATAGCATTGGCTGAAAA+AGG - chr8_4:32991777-32991796 Msa1323950:three_prime_UTR 40.0%
!! GGATAGCATTGGCTGAAAAA+GGG - chr8_4:32991778-32991797 Msa1323950:three_prime_UTR 40.0%
TGATGAGGTTTGGAAGGATA+AGG - chr8_4:32991941-32991960 Msa1323950:three_prime_UTR 40.0%
GCTTTCTCATAAGGATCTGA+GGG + chr8_4:32991978-32991997 None:intergenic 40.0%
AGCTTTCTCATAAGGATCTG+AGG + chr8_4:32991979-32991998 None:intergenic 40.0%
CTTGCTTGAGCTTTCTCATA+AGG + chr8_4:32991987-32992006 None:intergenic 40.0%
!! GGCTGATTTTGTCAACAAGA+AGG - chr8_4:32992013-32992032 Msa1323950:CDS 40.0%
CATATCTCACTAGGAAGGAA+AGG + chr8_4:32992309-32992328 None:intergenic 40.0%
!! AAAATGCAGGTTGGTGATGT+TGG - chr8_4:32992466-32992485 Msa1323950:intron 40.0%
!! CTTGGAGACCAACCTTATTT+TGG - chr8_4:32992574-32992593 Msa1323950:intron 40.0%
TGTCACCACCAAAATAAGGT+TGG + chr8_4:32992585-32992604 None:intergenic 40.0%
CAGTGTTTCCAAATCTGTTG+CGG - chr8_4:32992738-32992757 Msa1323950:intron 40.0%
TTTCTCATCCGCAACAGATT+TGG + chr8_4:32992749-32992768 None:intergenic 40.0%
TTTGGACTGAGAAGACACTT+TGG - chr8_4:32992810-32992829 Msa1323950:CDS 40.0%
! GACACTTTGGACTCTAAGAA+TGG - chr8_4:32992823-32992842 Msa1323950:CDS 40.0%
TTCCTTCCTTTGTTGCTATG+TGG - chr8_4:32993006-32993025 Msa1323950:CDS 40.0%
AACCACATAGCAACAAAGGA+AGG + chr8_4:32993011-32993030 None:intergenic 40.0%
TTGGAACCACATAGCAACAA+AGG + chr8_4:32993015-32993034 None:intergenic 40.0%
TACCTGATTTAACTACGAGG+AGG - chr8_4:32993070-32993089 Msa1323950:five_prime_UTR 40.0%
TGATGTTGGAGGGAGGATAT+GGG - chr8_4:32992480-32992499 Msa1323950:intron 45.0%
!!! GGAGACCAACCTTATTTTGG+TGG - chr8_4:32992577-32992596 Msa1323950:intron 45.0%
GGTTGCTCCTATTAGTGCTT+TGG - chr8_4:32992880-32992899 Msa1323950:CDS 45.0%
GAGTACAGATTGGAGGTGAT+TGG + chr8_4:32993034-32993053 None:intergenic 45.0%
AGGATCTGAGTACAGATTGG+AGG + chr8_4:32993041-32993060 None:intergenic 45.0%
CTCCTCCTCGTAGTTAAATC+AGG + chr8_4:32993075-32993094 None:intergenic 45.0%
TGATGTTGGAGGGAGGATAT+GGG - chr8_4:32992480-32992499 Msa1323950:intron 45.0%
!!! GGAGACCAACCTTATTTTGG+TGG - chr8_4:32992577-32992596 Msa1323950:intron 45.0%
GGTTGCTCCTATTAGTGCTT+TGG - chr8_4:32992880-32992899 Msa1323950:CDS 45.0%
GAGTACAGATTGGAGGTGAT+TGG + chr8_4:32993034-32993053 None:intergenic 45.0%
AGGATCTGAGTACAGATTGG+AGG + chr8_4:32993041-32993060 None:intergenic 45.0%
CTCCTCCTCGTAGTTAAATC+AGG + chr8_4:32993075-32993094 None:intergenic 45.0%
!! ATGCAGGTTGGTGATGTTGG+AGG - chr8_4:32992469-32992488 Msa1323950:intron 50.0%
!! TGCAGGTTGGTGATGTTGGA+GGG - chr8_4:32992470-32992489 Msa1323950:intron 50.0%
GTGATGTTGGAGGGAGGATA+TGG - chr8_4:32992479-32992498 Msa1323950:intron 50.0%
!! ATGCAGGTTGGTGATGTTGG+AGG - chr8_4:32992469-32992488 Msa1323950:intron 50.0%
!! TGCAGGTTGGTGATGTTGGA+GGG - chr8_4:32992470-32992489 Msa1323950:intron 50.0%
GTGATGTTGGAGGGAGGATA+TGG - chr8_4:32992479-32992498 Msa1323950:intron 50.0%
!! AGGTTGGTGATGTTGGAGGG+AGG - chr8_4:32992473-32992492 Msa1323950:intron 55.0%
!! AGGTTGGTGATGTTGGAGGG+AGG - chr8_4:32992473-32992492 Msa1323950:intron 55.0%
GTTGGAGGGAGGATATGGGC+TGG - chr8_4:32992484-32992503 Msa1323950:intron 60.0%
GTTGGAGGGAGGATATGGGC+TGG - chr8_4:32992484-32992503 Msa1323950:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 32991630 32993150 32991630 ID=Msa1323950;Name=Msa1323950
chr8_4 mRNA 32991630 32993150 32991630 ID=Msa1323950-mRNA-1;Parent=Msa1323950;Name=Msa1323950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=90|1|1|1|1|1|2|331|219
chr8_4 exon 32991630 32992305 32991630 ID=Msa1323950-mRNA-1:exon:10721;Parent=Msa1323950-mRNA-1
chr8_4 exon 32992746 32993150 32992746 ID=Msa1323950-mRNA-1:exon:10720;Parent=Msa1323950-mRNA-1
chr8_4 five_prime_UTR 32993061 32993150 32993061 ID=Msa1323950-mRNA-1:five_prime_utr;Parent=Msa1323950-mRNA-1
chr8_4 CDS 32992746 32993060 32992746 ID=Msa1323950-mRNA-1:cds;Parent=Msa1323950-mRNA-1
chr8_4 CDS 32991961 32992305 32991961 ID=Msa1323950-mRNA-1:cds;Parent=Msa1323950-mRNA-1
chr8_4 three_prime_UTR 32991630 32991960 32991630 ID=Msa1323950-mRNA-1:three_prime_utr;Parent=Msa1323950-mRNA-1
Gene Sequence

>Msa1323950

ATGGCAGAGGAGTTAATATTGTTAGATGAATGGCTTAGTATGTTTGGTATGAGAGCAAGGATAGCATTGGCTGAAAAAGGGATTAAGTATGAGTACAAGGAAGAAGATCTTGAAAACAAGAGCCAAATGCTTTTGCAAATGAATCCAATTCACAAGAAGATTCCAGTTCTTATCCATAAGGGAAAACCAATTTGTGAATCCATCATCATTGTTGAGTATATTGATGAGGTTTGGAAGGATAAGGTCTCATTTCTACCCTCAGATCCTTATGAGAAAGCTCAAGCAAGATTTTGGGCTGATTTTGTCAACAAGAAGGTTGGTGATGTTGGAGGGAGGATATGGGCTGGAAAGAGAGATGAGATTGAATTGGCAAAGAAAGAGTTGATTGATGGCTTAAAGGAATTAGAGAATGTGCTTGGAGACCAACCTTATTTTGGTGGTGACACATTTGGGTTTGTTGACATTGCTTTGATCCCTTTCTATAGTTGGTTTTATACTTATGAGAAATTATGCAACTTCAAAGTGGAGGAAGAGTGTGATAAACTGATTGCTTGGGCAAAGAGATGCAAGCAAAGAGACAGTGTTTCCAAATCTGTTGCGGATGAGAAAGAAGTGTATGATTTTGTTGTTGACTATAGGAAGAGGTTTGATTTGGACTGA

Protein sequence

>Msa1323950

MAEELILLDEWLSMFGMRARIALAEKGIKYEYKEEDLENKSQMLLQMNPIHKKIPVLIHKGKPICESIIIVEYIDEVWKDKVSFLPSDPYEKAQARFWADFVNKKVGDVGGRIWAGKRDEIELAKKELIDGLKELENVLGDQPYFGGDTFGFVDIALIPFYSWFYTYEKLCNFKVEEECDKLIAWAKRCKQRDSVSKSVADEKEVYDFVVDYRKRFDLD*