AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0955300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955300 MtrunA17_Chr6g0480631 96.393 499 7 1 1 488 1 499 0.0 991
Msa0955300 MtrunA17_Chr3g0109901 72.407 511 115 5 1 488 1 508 0.0 752
Msa0955300 MtrunA17_Chr8g0375301 68.577 471 128 3 12 462 9 479 0.0 668
Msa0955300 MtrunA17_Chr5g0433931 66.993 409 116 3 99 488 1 409 0.0 566
Msa0955300 MtrunA17_Chr5g0433921 79.000 100 18 1 1 100 1 97 7.23e-50 166
Msa0955300 MtrunA17_Chr7g0222381 25.762 361 227 12 86 425 159 499 6.31e-16 80.5
Msa0955300 MtrunA17_Chr5g0432951 76.923 39 9 0 244 282 15 53 3.26e-15 71.2
Msa0955300 MtrunA17_Chr5g0432961 52.174 69 33 0 364 432 13 81 2.01e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955300 AT2G02010.1 75.556 495 101 3 1 484 1 486 0.0 779
Msa0955300 AT2G02010.2 75.556 495 101 3 1 484 53 538 0.0 779
Msa0955300 AT5G17330.1 73.870 509 105 5 1 488 1 502 0.0 760
Msa0955300 AT3G17760.2 75.560 491 102 4 12 488 8 494 0.0 760
Msa0955300 AT3G17760.1 75.560 491 102 4 12 488 8 494 0.0 760
Msa0955300 AT2G02000.1 72.874 494 114 3 1 483 1 485 0.0 755
Msa0955300 AT1G65960.2 74.251 501 109 5 1 488 1 494 0.0 751
Msa0955300 AT1G65960.1 73.370 368 82 4 134 488 1 365 0.0 540
Msa0955300 AT1G65960.3 73.370 368 82 4 134 488 1 365 0.0 540
Msa0955300 AT1G65960.4 73.370 368 82 4 134 488 1 365 0.0 540
Msa0955300 AT3G17720.1 67.284 162 39 2 94 244 27 185 2.42e-69 220
Msa0955300 AT1G27980.1 24.309 362 231 12 84 423 160 500 9.81e-13 70.9

Find 117 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATGTGTTGCAGCCATTT+TGG 0.144740 6_3:+59312968 Msa0955300:CDS
TTCCATTGTTGCTTTATCTA+TGG 0.221404 6_3:+59314350 Msa0955300:three_prime_UTR
CTGGTATTGGTTGGGTTGTT+TGG 0.223066 6_3:+59313207 Msa0955300:CDS
TTCTCTACCCTGATCTTCTA+TGG 0.227683 6_3:+59313120 Msa0955300:CDS
TTCATTCATTCATATAAATA+TGG 0.237410 6_3:-59314405 None:intergenic
CTCAATACTACCAATTTATA+CGG 0.248455 6_3:+59313528 Msa0955300:CDS
AGTTGAAGAAATCACCATTT+TGG 0.255929 6_3:-59310341 None:intergenic
ATCTGATATGCTGCATCTTT+TGG 0.270173 6_3:-59310569 None:intergenic
TCCTGTCACCACTGAGCTTC+AGG 0.282193 6_3:+59310727 Msa0955300:CDS
TAACAAGAATTATGTTGATA+TGG 0.304779 6_3:+59310697 Msa0955300:CDS
CTGTCCTCCGAGTGGTGATT+AGG 0.312016 6_3:+59314009 Msa0955300:CDS
CGAAGCCAAGCCGTATAAAT+TGG 0.316347 6_3:-59313538 None:intergenic
AGACTCACGCTGAGATTCTT+AGG 0.331003 6_3:+59314189 Msa0955300:CDS
GGTCAACGTTGAACCCAAAA+TGG 0.345320 6_3:-59312982 None:intergenic
CGGAAATCCCATAGAAGATC+AGG 0.359620 6_3:-59313128 None:intergenic
GGTCTTGTTTACCCTGGTAT+TGG 0.363471 6_3:+59313194 Msa0955300:CDS
ACGCTGAGATTCTTAGGTAT+TGG 0.370826 6_3:+59314195 Msa0955300:CDS
GAGGCATAAAGCTGACTTGC+CGG 0.372412 6_3:+59313229 Msa0955300:CDS
CATCTATTCAATGCTCCTAT+TGG 0.381425 6_3:+59311534 Msa0955300:CDS
TGGCTTCATTTGTGACTACT+TGG 0.381755 6_3:+59310636 Msa0955300:CDS
GCAGTTTCCTCTTCACCAAT+AGG 0.385794 6_3:-59311549 None:intergenic
CAGAACTCATCCAACCAAAA+TGG 0.395608 6_3:+59310327 Msa0955300:exon
TTCTAGATACGTGCGTGAAC+AGG 0.406297 6_3:+59310411 Msa0955300:CDS
CGGAAAACCAAGGCTTAACT+TGG 0.406491 6_3:+59310616 Msa0955300:CDS
ACCATTTCAACAGCTTTCAA+TGG 0.408300 6_3:-59312933 None:intergenic
TACTACCAATTTATACGGCT+TGG 0.415144 6_3:+59313533 Msa0955300:CDS
TGTCCTCCGAGTGGTGATTA+GGG 0.420453 6_3:+59314010 Msa0955300:CDS
CTCGCAGCATCTACGTGAAT+TGG 0.423670 6_3:-59313077 None:intergenic
TTGTTTACCCTGGTATTGGT+TGG 0.425703 6_3:+59313198 Msa0955300:CDS
AAAATACGGGTGGATAGTTC+CGG 0.431504 6_3:+59313953 Msa0955300:CDS
TGTTTACCCTGGTATTGGTT+GGG 0.431991 6_3:+59313199 Msa0955300:CDS
GATAAGCCTAACATAGTTAC+CGG 0.434270 6_3:+59311675 Msa0955300:CDS
ACTATGTTAGGCTTATCATA+TGG 0.434829 6_3:-59311669 None:intergenic
TTAGCTCCGGTAACTATGTT+AGG 0.434904 6_3:-59311681 None:intergenic
GCAGACCATTTGAGAAAATA+CGG 0.437901 6_3:+59313939 Msa0955300:CDS
AAGGAAGGAATTGAGAAAAC+AGG 0.440850 6_3:+59313828 Msa0955300:CDS
CAAAATGGCTGCAACACATA+TGG 0.445282 6_3:-59312967 None:intergenic
ATTTATACGGCTTGGCTTCG+AGG 0.445868 6_3:+59313541 Msa0955300:CDS
GAGAAATTCAACGTGAAAGT+TGG 0.446490 6_3:-59313293 None:intergenic
ATACTTTGAGGTTGAGCTAA+AGG 0.448634 6_3:+59312875 Msa0955300:intron
TCTCTACCCTGATCTTCTAT+GGG 0.463816 6_3:+59313121 Msa0955300:CDS
GTATTGGTTGGGTTGTTTGG+AGG 0.473665 6_3:+59313210 Msa0955300:CDS
GCAGTAGGTGTTGGAACTGT+AGG 0.480901 6_3:+59311570 Msa0955300:CDS
CAAGAGAGTTGGAGCATGCT+AGG 0.485182 6_3:+59314235 Msa0955300:CDS
AACGTTGACCGGAGAGTTTG+AGG 0.489514 6_3:+59312995 Msa0955300:CDS
TTCATTTGTGACTACTTGGA+TGG 0.490554 6_3:+59310640 Msa0955300:CDS
CAAACAACCCAACCAATACC+AGG 0.491052 6_3:-59313206 None:intergenic
TCCATTGAAAGCTGTTGAAA+TGG 0.494508 6_3:+59312932 Msa0955300:CDS
AAAGCAACTCACAACAATCA+AGG 0.494924 6_3:-59314287 None:intergenic
AATGAAGCCAAGTTAAGCCT+TGG 0.498497 6_3:-59310623 None:intergenic
AAAATTGTCTCCAAGGACAT+AGG 0.500052 6_3:+59313858 Msa0955300:CDS
ATGGGATTTCCGTTTGCCGT+TGG 0.504123 6_3:+59313139 Msa0955300:CDS
CACGTAGATGCTGCGAGTGG+CGG 0.510593 6_3:+59313083 Msa0955300:CDS
TGCGTCCGCTGGCATTGTGT+AGG 0.512284 6_3:-59313976 None:intergenic
CTTGTGGATGGCAAGAGAGT+TGG 0.513748 6_3:+59314224 Msa0955300:CDS
ACCTGAAGCTCAGTGGTGAC+AGG 0.517726 6_3:-59310728 None:intergenic
AAGGTTTAAAATTGTCTCCA+AGG 0.518110 6_3:+59313851 Msa0955300:CDS
CAAAAGTGCATGCTATGGTC+TGG 0.519828 6_3:-59310387 None:intergenic
TCCGCTGGCATTGTGTAGGC+CGG 0.520444 6_3:-59313972 None:intergenic
CAATGCTCCTATTGGTGAAG+AGG 0.522077 6_3:+59311542 Msa0955300:CDS
ACTGATCTTTGTGAAGATAG+AGG 0.525765 6_3:-59310261 None:intergenic
CTCCATAGATAAAGCAACAA+TGG 0.526759 6_3:-59314352 None:intergenic
GCTGCTGTCTTTCAGAGAGA+AGG 0.527394 6_3:-59313895 None:intergenic
AATGATGAGTTGATGTTAGA+CGG 0.529060 6_3:+59310596 Msa0955300:CDS
GTGGCAGACTAAGAGAAAAT+CGG 0.530227 6_3:+59311638 Msa0955300:CDS
AAGTGGCACACCTATGTCCT+TGG 0.530991 6_3:-59313868 None:intergenic
GTCATCAGAGGCAATAATGC+TGG 0.532016 6_3:+59311593 Msa0955300:CDS
TGAGTGTGATAAGCTTATCA+TGG 0.535116 6_3:+59310667 Msa0955300:CDS
AGAAGATCAGGGTAGAGAAA+CGG 0.536404 6_3:-59313116 None:intergenic
GAGGAAACTGCAGTAGGTGT+TGG 0.536508 6_3:+59311561 Msa0955300:CDS
ATCAACCTGCACATTAGCTC+CGG 0.537707 6_3:-59311694 None:intergenic
CAGTAGGTGTTGGAACTGTA+GGG 0.543728 6_3:+59311571 Msa0955300:CDS
GGAAGATTTCAGCTGCAGCT+TGG 0.547015 6_3:+59314031 Msa0955300:CDS
AAATGTGATGGAAAATTGCT+TGG 0.550366 6_3:+59313788 Msa0955300:CDS
AATGTTAGCGGTCACAAGTA+CGG 0.552630 6_3:+59313173 Msa0955300:CDS
TTCAAAAGATGCTCATGTTG+CGG 0.558105 6_3:+59314121 Msa0955300:CDS
CTTCACATCCTCAAACTCTC+CGG 0.561969 6_3:-59313003 None:intergenic
GTTCATAGATGCATGGACAT+TGG 0.563250 6_3:-59314383 None:intergenic
AAAAGAACAAGGAGACAGGA+TGG 0.565661 6_3:+59313048 Msa0955300:CDS
GTGAAAAGTATCAATGTTAG+CGG 0.565895 6_3:+59313161 Msa0955300:CDS
CACCGAGGATTACTATGTGA+TGG 0.568761 6_3:+59312908 Msa0955300:CDS
AGAAGCAAAAGTGCATGCTA+TGG 0.570371 6_3:-59310392 None:intergenic
TCAGAGGCAATAATGCTGGC+TGG 0.584457 6_3:+59311597 Msa0955300:CDS
TTCACGTTGAATTTCTCCAA+AGG 0.587479 6_3:+59313299 Msa0955300:CDS
TGATCACTTATTCTAAGTAG+TGG 0.588952 6_3:+59310197 Msa0955300:five_prime_UTR
GGCGAACACAAGAATTCTGA+AGG 0.590261 6_3:+59313809 Msa0955300:CDS
ATCCATCACATAGTAATCCT+CGG 0.594189 6_3:-59312910 None:intergenic
AAAGAACAAGGAGACAGGAT+GGG 0.595274 6_3:+59313049 Msa0955300:CDS
AACACAAGAATTCTGAAGGA+AGG 0.596220 6_3:+59313813 Msa0955300:CDS
AAATATGGTTCATAGATGCA+TGG 0.597106 6_3:-59314390 None:intergenic
TATTGGAAGAAGCTTGTGGA+TGG 0.599442 6_3:+59314212 Msa0955300:CDS
AAGCAACTCACAACAATCAA+GGG 0.600601 6_3:-59314286 None:intergenic
TAGGTATTGGAAGAAGCTTG+TGG 0.602041 6_3:+59314208 Msa0955300:CDS
ATGATAAGCTTATCACACTC+AGG 0.609818 6_3:-59310665 None:intergenic
TTCATCATAAATGTATACAA+AGG 0.611494 6_3:-59314441 None:intergenic
AAGGAATTGAGAAAACAGGA+AGG 0.618569 6_3:+59313832 Msa0955300:CDS
TTCAGAGAGAAGGCAACAAG+TGG 0.622295 6_3:-59313885 None:intergenic
GGAAATCCCATAGAAGATCA+GGG 0.625993 6_3:-59313127 None:intergenic
TCTTTGATAACATTAAGTAG+TGG 0.626567 6_3:+59310237 Msa0955300:five_prime_UTR
CAGACCATTTGAGAAAATAC+GGG 0.628218 6_3:+59313940 Msa0955300:CDS
AGTTACCGGAGCTAATGTGC+AGG 0.628397 6_3:+59311689 Msa0955300:CDS
AAGTACGGTCTTGTTTACCC+TGG 0.636562 6_3:+59313188 Msa0955300:CDS
ACCATTTGAGAAAATACGGG+TGG 0.649671 6_3:+59313943 Msa0955300:CDS
GGTGAAGAGGAAACTGCAGT+AGG 0.652830 6_3:+59311555 Msa0955300:CDS
AATCTTCCCTAATCACCACT+CGG 0.661532 6_3:-59314016 None:intergenic
TGGAACTGTAGGGTCATCAG+AGG 0.671933 6_3:+59311581 Msa0955300:CDS
TGATGTTAGACGGAAAACCA+AGG 0.683101 6_3:+59310606 Msa0955300:CDS
GTGCTATTATATTCACACAC+CGG 0.687463 6_3:-59311512 None:intergenic
TCCGGCCTACACAATGCCAG+CGG 0.698888 6_3:+59313971 Msa0955300:CDS
AAACAACCCAACCAATACCA+GGG 0.700278 6_3:-59313205 None:intergenic
TAAACAAACCTGAAGCTCAG+TGG 0.702836 6_3:-59310735 None:intergenic
ACACATCGCTGTCCTCCGAG+TGG 0.704085 6_3:+59314001 Msa0955300:CDS
CAGACTAAGAGAAAATCGGA+AGG 0.707330 6_3:+59311642 Msa0955300:CDS
ATTCACGTAGATGCTGCGAG+TGG 0.708876 6_3:+59313080 Msa0955300:CDS
CTTCCCTAATCACCACTCGG+AGG 0.723923 6_3:-59314013 None:intergenic
TATCGCGAGTGAGACAAGCG+AGG 0.724808 6_3:+59314145 Msa0955300:CDS
AAAGGAAGTGAAACTCACCG+AGG 0.804933 6_3:+59312893 Msa0955300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTTTCAAATTATTAT+CGG - chr6_3:59312204-59312223 None:intergenic 10.0%
!! ATATGATTAAAAAAGAAAAA+TGG - chr6_3:59313688-59313707 None:intergenic 10.0%
!!! ATTTTTCTTTTTTAATCATA+TGG + chr6_3:59313687-59313706 Msa0955300:intron 10.0%
!!! GTCATTAAAAAATGATATTT+TGG - chr6_3:59311270-59311289 None:intergenic 15.0%
!! TTCATTCATTCATATAAATA+TGG - chr6_3:59314408-59314427 None:intergenic 15.0%
!! TCAAAGAAAAAAGAAAAAAG+AGG - chr6_3:59310224-59310243 None:intergenic 20.0%
!!! TGTGTGATGTTTTTTTTTTA+AGG - chr6_3:59310461-59310480 None:intergenic 20.0%
!! TAACAAGAATTATGTTGATA+TGG + chr6_3:59310697-59310716 Msa0955300:CDS 20.0%
!!! TTGATCAAGATTTTAAATTG+TGG + chr6_3:59310773-59310792 Msa0955300:intron 20.0%
!!! ACTTTTTAGATTTTTGTGTT+TGG + chr6_3:59311321-59311340 Msa0955300:intron 20.0%
!!! ATGTTTAATGTTGTTTATAC+AGG + chr6_3:59312830-59312849 Msa0955300:intron 20.0%
!! TCAAGTAAATATATTACCTT+TGG - chr6_3:59313318-59313337 None:intergenic 20.0%
!! TTCATCATAAATGTATACAA+AGG - chr6_3:59314444-59314463 None:intergenic 20.0%
!! TCTTTGATAACATTAAGTAG+TGG + chr6_3:59310237-59310256 Msa0955300:five_prime_UTR 25.0%
! CTATATCAACACATAAACAT+AGG - chr6_3:59310524-59310543 None:intergenic 25.0%
!! CTATGTTTATGTGTTGATAT+AGG + chr6_3:59310522-59310541 Msa0955300:intron 25.0%
! AATAAGACTAAGTACATGTT+TGG + chr6_3:59310842-59310861 Msa0955300:intron 25.0%
!! GGATCAAATTTTAAACTAAC+AGG + chr6_3:59311137-59311156 Msa0955300:intron 25.0%
!! TAAATTGATGGATGAGTTTA+AGG - chr6_3:59311164-59311183 None:intergenic 25.0%
!! TTTTAGATTTTTGTGTTTGG+TGG + chr6_3:59311324-59311343 Msa0955300:intron 25.0%
! CTGTTACAATTGAAATATCT+TGG + chr6_3:59311394-59311413 Msa0955300:intron 25.0%
!! TCAGTACTTTTATGTTTCAA+TGG - chr6_3:59311455-59311474 None:intergenic 25.0%
! TTTGTTAAATTATGCAGAAC+CGG + chr6_3:59311493-59311512 Msa0955300:intron 25.0%
!!! TGAAGAATTTTTGTGTCATT+TGG + chr6_3:59311980-59311999 Msa0955300:intron 25.0%
! ATTAAACATAGAGAGGTTTA+AGG - chr6_3:59312819-59312838 None:intergenic 25.0%
! AAACAACATTAAACATAGAG+AGG - chr6_3:59312826-59312845 None:intergenic 25.0%
! ACTTCTTACTAAAAAGAACA+AGG + chr6_3:59313037-59313056 Msa0955300:CDS 25.0%
!! GTTTTTCACATCAATTATCT+TGG + chr6_3:59313260-59313279 Msa0955300:CDS 25.0%
! CCAATGTATGAAAAATTCAA+AGG - chr6_3:59313347-59313366 None:intergenic 25.0%
!! CCTTTGAATTTTTCATACAT+TGG + chr6_3:59313344-59313363 Msa0955300:intron 25.0%
!! TCATGAGTATATTTCTTTTC+AGG - chr6_3:59313434-59313453 None:intergenic 25.0%
! GAAATACAAAGCAACATTAA+GGG - chr6_3:59313481-59313500 None:intergenic 25.0%
! AGAAATACAAAGCAACATTA+AGG - chr6_3:59313482-59313501 None:intergenic 25.0%
! CTCAATACTACCAATTTATA+CGG + chr6_3:59313528-59313547 Msa0955300:CDS 25.0%
!!! TGTTATTTTTCTTGCTCTAA+GGG + chr6_3:59313759-59313778 Msa0955300:intron 25.0%
!! TCTTTTGAATTGATAGAACT+TGG - chr6_3:59314110-59314129 None:intergenic 25.0%
TGATCACTTATTCTAAGTAG+TGG + chr6_3:59310197-59310216 Msa0955300:five_prime_UTR 30.0%
! AGTTGAAGAAATCACCATTT+TGG - chr6_3:59310344-59310363 None:intergenic 30.0%
GAAGAAAAAGACACTTACTT+AGG - chr6_3:59310439-59310458 None:intergenic 30.0%
! TCTTTTGGTATAGAATTCTC+TGG - chr6_3:59310557-59310576 None:intergenic 30.0%
!! AATGATGAGTTGATGTTAGA+CGG + chr6_3:59310596-59310615 Msa0955300:CDS 30.0%
AGATAGGATCTTTGATATTG+CGG + chr6_3:59310806-59310825 Msa0955300:intron 30.0%
! ATTTTGCAAAAGCTACATCA+GGG - chr6_3:59310903-59310922 None:intergenic 30.0%
! ATGTAGCTTTTGCAAAATCA+GGG + chr6_3:59310905-59310924 Msa0955300:intron 30.0%
ACACCATATTGAAACTATAG+AGG + chr6_3:59311116-59311135 Msa0955300:intron 30.0%
GATCCTCTATAGTTTCAATA+TGG - chr6_3:59311122-59311141 None:intergenic 30.0%
ATCAATTTAGTCCTTGAGTA+GGG + chr6_3:59311175-59311194 Msa0955300:intron 30.0%
TATACTCTCATCCATCAATT+TGG - chr6_3:59311202-59311221 None:intergenic 30.0%
!!! GTTTAGCTTTTAAAAGGAAG+TGG + chr6_3:59311619-59311638 Msa0955300:CDS 30.0%
ACTATGTTAGGCTTATCATA+TGG - chr6_3:59311672-59311691 None:intergenic 30.0%
! AATAGGTAGAAGTGTATGTT+TGG + chr6_3:59311793-59311812 Msa0955300:intron 30.0%
!!! AAGCTCTAAAATGTAGCTTT+TGG + chr6_3:59311863-59311882 Msa0955300:intron 30.0%
ATTGTCTAGATGTGTACTTT+AGG + chr6_3:59311952-59311971 Msa0955300:intron 30.0%
TGTAGTTTCTTAGAAATGTG+AGG + chr6_3:59312024-59312043 Msa0955300:intron 30.0%
GTAGTTTCTTAGAAATGTGA+GGG + chr6_3:59312025-59312044 Msa0955300:intron 30.0%
TAGTTTCTTAGAAATGTGAG+GGG + chr6_3:59312026-59312045 Msa0955300:intron 30.0%
GCAATATGCAAAACTACATA+GGG - chr6_3:59312066-59312085 None:intergenic 30.0%
AGCAATATGCAAAACTACAT+AGG - chr6_3:59312067-59312086 None:intergenic 30.0%
TTCAATGTAATCACATGTGT+CGG + chr6_3:59312229-59312248 Msa0955300:intron 30.0%
GATGAGGCAATAAATTTAGT+GGG - chr6_3:59312337-59312356 None:intergenic 30.0%
AGATGAGGCAATAAATTTAG+TGG - chr6_3:59312338-59312357 None:intergenic 30.0%
TGTTGAACAAAAGTAAGATG+AGG - chr6_3:59312353-59312372 None:intergenic 30.0%
!! ATAAGTTGTTTTCGAGCTTA+TGG - chr6_3:59312629-59312648 None:intergenic 30.0%
! GCAATTTTCATAAGCTATCA+GGG - chr6_3:59312670-59312689 None:intergenic 30.0%
! AGCAATTTTCATAAGCTATC+AGG - chr6_3:59312671-59312690 None:intergenic 30.0%
! TGTTGTTTATACAGGTTTGT+TGG + chr6_3:59312838-59312857 Msa0955300:intron 30.0%
! GTTGTTTATACAGGTTTGTT+GGG + chr6_3:59312839-59312858 Msa0955300:intron 30.0%
AAAATTTGCGAGATACTTTG+AGG + chr6_3:59312863-59312882 Msa0955300:intron 30.0%
! ACATTGATACTTTTCACCAA+CGG - chr6_3:59313158-59313177 None:intergenic 30.0%
!! GTGAAAAGTATCAATGTTAG+CGG + chr6_3:59313161-59313180 Msa0955300:CDS 30.0%
ATGTGAAAAACAAGATCATC+CGG - chr6_3:59313251-59313270 None:intergenic 30.0%
!!! CTGTTATTTTTCTTGCTCTA+AGG + chr6_3:59313758-59313777 Msa0955300:intron 30.0%
! AAATGTGATGGAAAATTGCT+TGG + chr6_3:59313788-59313807 Msa0955300:CDS 30.0%
! AAGGTTTAAAATTGTCTCCA+AGG + chr6_3:59313851-59313870 Msa0955300:CDS 30.0%
AGAAAAAGTTGTGAATCTCT+TGG + chr6_3:59314076-59314095 Msa0955300:CDS 30.0%
!! TTCCATTGTTGCTTTATCTA+TGG + chr6_3:59314350-59314369 Msa0955300:three_prime_UTR 30.0%
AAATATGGTTCATAGATGCA+TGG - chr6_3:59314393-59314412 None:intergenic 30.0%
ACTGATCTTTGTGAAGATAG+AGG - chr6_3:59310264-59310283 None:intergenic 35.0%
!! GAAGAAATCACCATTTTGGT+TGG - chr6_3:59310340-59310359 None:intergenic 35.0%
ACACACACTTTGTTCTTTGT+TGG + chr6_3:59310476-59310495 Msa0955300:intron 35.0%
! ATCTGATATGCTGCATCTTT+TGG - chr6_3:59310572-59310591 None:intergenic 35.0%
TTCATTTGTGACTACTTGGA+TGG + chr6_3:59310640-59310659 Msa0955300:CDS 35.0%
ATGATAAGCTTATCACACTC+AGG - chr6_3:59310668-59310687 None:intergenic 35.0%
TGAGTGTGATAAGCTTATCA+TGG + chr6_3:59310667-59310686 Msa0955300:CDS 35.0%
! GATTTTGCAAAAGCTACATC+AGG - chr6_3:59310904-59310923 None:intergenic 35.0%
! GATGTAGCTTTTGCAAAATC+AGG + chr6_3:59310904-59310923 Msa0955300:intron 35.0%
! CAGCTTTGTAAGAATCATTG+TGG - chr6_3:59310935-59310954 None:intergenic 35.0%
!! TTTATGGTGTTGCAGTTGTT+TGG + chr6_3:59311032-59311051 Msa0955300:intron 35.0%
CTACTCAAGGACTAAATTGA+TGG - chr6_3:59311176-59311195 None:intergenic 35.0%
CATCAATTTAGTCCTTGAGT+AGG + chr6_3:59311174-59311193 Msa0955300:intron 35.0%
!! AGATTTTTGTGTTTGGTGGT+TGG + chr6_3:59311328-59311347 Msa0955300:intron 35.0%
! TTGGTGGTTGGATGAAAATT+TGG + chr6_3:59311340-59311359 Msa0955300:intron 35.0%
! GTGCTATTATATTCACACAC+CGG - chr6_3:59311515-59311534 None:intergenic 35.0%
CATCTATTCAATGCTCCTAT+TGG + chr6_3:59311534-59311553 Msa0955300:CDS 35.0%
!!! TGGCTGGTTTAGCTTTTAAA+AGG + chr6_3:59311613-59311632 Msa0955300:CDS 35.0%
GATAAGCCTAACATAGTTAC+CGG + chr6_3:59311675-59311694 Msa0955300:CDS 35.0%
ATGCTCACATCATGAGAAAT+AGG + chr6_3:59311776-59311795 Msa0955300:intron 35.0%
GAAGTGTATGTTTGGATAAG+TGG + chr6_3:59311801-59311820 Msa0955300:intron 35.0%
TGTATGTTTGGATAAGTGGT+GGG + chr6_3:59311805-59311824 Msa0955300:intron 35.0%
ACAAAATCATGATACTGTCG+TGG - chr6_3:59311841-59311860 None:intergenic 35.0%
TTGTGAGATTGACAGAATCA+CGG - chr6_3:59311907-59311926 None:intergenic 35.0%
! CGATTGATGTGTCGTATTTT+GGG + chr6_3:59312496-59312515 Msa0955300:intron 35.0%
! GATTGATGTGTCGTATTTTG+GGG + chr6_3:59312497-59312516 Msa0955300:intron 35.0%
TAGACACTTGTGAAACTGTT+TGG + chr6_3:59312573-59312592 Msa0955300:intron 35.0%
AGACACTTGTGAAACTGTTT+GGG + chr6_3:59312574-59312593 Msa0955300:intron 35.0%
!! ATACTTTGAGGTTGAGCTAA+AGG + chr6_3:59312875-59312894 Msa0955300:intron 35.0%
ATCCATCACATAGTAATCCT+CGG - chr6_3:59312913-59312932 None:intergenic 35.0%
TCCATTGAAAGCTGTTGAAA+TGG + chr6_3:59312932-59312951 Msa0955300:CDS 35.0%
ACCATTTCAACAGCTTTCAA+TGG - chr6_3:59312936-59312955 None:intergenic 35.0%
!! ATATGTGTTGCAGCCATTTT+GGG + chr6_3:59312969-59312988 Msa0955300:CDS 35.0%
ACTAAAAAGAACAAGGAGAC+AGG + chr6_3:59313044-59313063 Msa0955300:CDS 35.0%
GAGAAATTCAACGTGAAAGT+TGG - chr6_3:59313296-59313315 None:intergenic 35.0%
TTCACGTTGAATTTCTCCAA+AGG + chr6_3:59313299-59313318 Msa0955300:CDS 35.0%
TTTCATACATTGGTCACATG+TGG + chr6_3:59313354-59313373 Msa0955300:intron 35.0%
TTCAGGAAATTCTCACATGT+TGG - chr6_3:59313417-59313436 None:intergenic 35.0%
TGCTTTGTATTTCTTTCGAC+AGG + chr6_3:59313488-59313507 Msa0955300:intron 35.0%
GCTTTGTATTTCTTTCGACA+GGG + chr6_3:59313489-59313508 Msa0955300:intron 35.0%
TACTACCAATTTATACGGCT+TGG + chr6_3:59313533-59313552 Msa0955300:CDS 35.0%
TATCTTCTCTTCACATGATG+TGG - chr6_3:59313644-59313663 None:intergenic 35.0%
TAAGGGCTACAAAAATGTGA+TGG + chr6_3:59313776-59313795 Msa0955300:intron 35.0%
! AACACAAGAATTCTGAAGGA+AGG + chr6_3:59313813-59313832 Msa0955300:CDS 35.0%
AAGGAAGGAATTGAGAAAAC+AGG + chr6_3:59313828-59313847 Msa0955300:CDS 35.0%
AAGGAATTGAGAAAACAGGA+AGG + chr6_3:59313832-59313851 Msa0955300:CDS 35.0%
AAAATTGTCTCCAAGGACAT+AGG + chr6_3:59313858-59313877 Msa0955300:CDS 35.0%
GCAGACCATTTGAGAAAATA+CGG + chr6_3:59313939-59313958 Msa0955300:CDS 35.0%
CAGACCATTTGAGAAAATAC+GGG + chr6_3:59313940-59313959 Msa0955300:CDS 35.0%
TTCAAAAGATGCTCATGTTG+CGG + chr6_3:59314121-59314140 Msa0955300:CDS 35.0%
AAGCAACTCACAACAATCAA+GGG - chr6_3:59314289-59314308 None:intergenic 35.0%
AAAGCAACTCACAACAATCA+AGG - chr6_3:59314290-59314309 None:intergenic 35.0%
CTCCATAGATAAAGCAACAA+TGG - chr6_3:59314355-59314374 None:intergenic 35.0%
CAGAACTCATCCAACCAAAA+TGG + chr6_3:59310327-59310346 Msa0955300:exon 40.0%
!!! ATGGTCTGGTTTTGTTCATC+TGG - chr6_3:59310376-59310395 None:intergenic 40.0%
! AGAAGCAAAAGTGCATGCTA+TGG - chr6_3:59310395-59310414 None:intergenic 40.0%
TGATGTTAGACGGAAAACCA+AGG + chr6_3:59310606-59310625 Msa0955300:CDS 40.0%
AATGAAGCCAAGTTAAGCCT+TGG - chr6_3:59310626-59310645 None:intergenic 40.0%
TGGCTTCATTTGTGACTACT+TGG + chr6_3:59310636-59310655 Msa0955300:CDS 40.0%
TAAACAAACCTGAAGCTCAG+TGG - chr6_3:59310738-59310757 None:intergenic 40.0%
TCTCTCTCTAAATCTGACGA+TGG + chr6_3:59311081-59311100 Msa0955300:intron 40.0%
CTAAATCTGACGATGGTCTA+CGG + chr6_3:59311088-59311107 Msa0955300:intron 40.0%
ATCAATTTGGTCCCTACTCA+AGG - chr6_3:59311189-59311208 None:intergenic 40.0%
TTGAGTAGGGACCAAATTGA+TGG + chr6_3:59311188-59311207 Msa0955300:intron 40.0%
GTGGCAGACTAAGAGAAAAT+CGG + chr6_3:59311638-59311657 Msa0955300:CDS 40.0%
CAGACTAAGAGAAAATCGGA+AGG + chr6_3:59311642-59311661 Msa0955300:CDS 40.0%
TTAGCTCCGGTAACTATGTT+AGG - chr6_3:59311684-59311703 None:intergenic 40.0%
GTGTATGTTTGGATAAGTGG+TGG + chr6_3:59311804-59311823 Msa0955300:intron 40.0%
! TGTAGCTTTTGGCAAAATCG+CGG + chr6_3:59311874-59311893 Msa0955300:intron 40.0%
AACCAAGCCAAACATGCTTT+GGG + chr6_3:59311925-59311944 Msa0955300:intron 40.0%
AATTCCTCCCAAAGCATGTT+TGG - chr6_3:59311935-59311954 None:intergenic 40.0%
TTGCTATGAAATGCAGTAGC+AGG + chr6_3:59312082-59312101 Msa0955300:intron 40.0%
!!! AAGCACTTGTTTTAGGCCTT+CGG + chr6_3:59312129-59312148 Msa0955300:intron 40.0%
CGAAATGGACAATGACACAT+TGG + chr6_3:59312176-59312195 Msa0955300:intron 40.0%
CAACAAACATTGCACACATG+AGG + chr6_3:59312368-59312387 Msa0955300:intron 40.0%
!! GTGAACAAAGCTTTGAGACA+GGG - chr6_3:59312394-59312413 None:intergenic 40.0%
!! AGTGAACAAAGCTTTGAGAC+AGG - chr6_3:59312395-59312414 None:intergenic 40.0%
!! TCAAAGCTTTGTTCACTCTC+AGG + chr6_3:59312398-59312417 Msa0955300:intron 40.0%
!! CAAAGCTTTGTTCACTCTCA+GGG + chr6_3:59312399-59312418 Msa0955300:intron 40.0%
!! AAAGCTTTGTTCACTCTCAG+GGG + chr6_3:59312400-59312419 Msa0955300:intron 40.0%
!! AGCTTTAGATTCACATTGCC+TGG + chr6_3:59312429-59312448 Msa0955300:intron 40.0%
TTGATTCTGCAATACTGTGC+TGG - chr6_3:59312457-59312476 None:intergenic 40.0%
! GCGATTGATGTGTCGTATTT+TGG + chr6_3:59312495-59312514 Msa0955300:intron 40.0%
TCAAATAAACCAGTCCAAGC+GGG - chr6_3:59312538-59312557 None:intergenic 40.0%
CTCAAATAAACCAGTCCAAG+CGG - chr6_3:59312539-59312558 None:intergenic 40.0%
CAAAATGGCTGCAACACATA+TGG - chr6_3:59312970-59312989 None:intergenic 40.0%
! CATATGTGTTGCAGCCATTT+TGG + chr6_3:59312968-59312987 Msa0955300:CDS 40.0%
!!! ATTTTGGGTTCAACGTTGAC+CGG + chr6_3:59312984-59313003 Msa0955300:CDS 40.0%
AAAAGAACAAGGAGACAGGA+TGG + chr6_3:59313048-59313067 Msa0955300:CDS 40.0%
AAAGAACAAGGAGACAGGAT+GGG + chr6_3:59313049-59313068 Msa0955300:CDS 40.0%
AGAAGATCAGGGTAGAGAAA+CGG - chr6_3:59313119-59313138 None:intergenic 40.0%
TTCTCTACCCTGATCTTCTA+TGG + chr6_3:59313120-59313139 Msa0955300:CDS 40.0%
TCTCTACCCTGATCTTCTAT+GGG + chr6_3:59313121-59313140 Msa0955300:CDS 40.0%
GGAAATCCCATAGAAGATCA+GGG - chr6_3:59313130-59313149 None:intergenic 40.0%
! TACTTTTCACCAACGGCAAA+CGG - chr6_3:59313151-59313170 None:intergenic 40.0%
AATGTTAGCGGTCACAAGTA+CGG + chr6_3:59313173-59313192 Msa0955300:CDS 40.0%
!! TTGTTTACCCTGGTATTGGT+TGG + chr6_3:59313198-59313217 Msa0955300:CDS 40.0%
!! TGTTTACCCTGGTATTGGTT+GGG + chr6_3:59313199-59313218 Msa0955300:CDS 40.0%
AAACAACCCAACCAATACCA+GGG - chr6_3:59313208-59313227 None:intergenic 40.0%
ACCATTTGAGAAAATACGGG+TGG + chr6_3:59313943-59313962 Msa0955300:CDS 40.0%
! TCCACCCGTATTTTCTCAAA+TGG - chr6_3:59313947-59313966 None:intergenic 40.0%
AAAATACGGGTGGATAGTTC+CGG + chr6_3:59313953-59313972 Msa0955300:CDS 40.0%
AATCTTCCCTAATCACCACT+CGG - chr6_3:59314019-59314038 None:intergenic 40.0%
ACGCTGAGATTCTTAGGTAT+TGG + chr6_3:59314195-59314214 Msa0955300:CDS 40.0%
!! TAGGTATTGGAAGAAGCTTG+TGG + chr6_3:59314208-59314227 Msa0955300:CDS 40.0%
TATTGGAAGAAGCTTGTGGA+TGG + chr6_3:59314212-59314231 Msa0955300:CDS 40.0%
GTTCATAGATGCATGGACAT+TGG - chr6_3:59314386-59314405 None:intergenic 40.0%
! CAAAAGTGCATGCTATGGTC+TGG - chr6_3:59310390-59310409 None:intergenic 45.0%
TTCTAGATACGTGCGTGAAC+AGG + chr6_3:59310411-59310430 Msa0955300:CDS 45.0%
CGGAAAACCAAGGCTTAACT+TGG + chr6_3:59310616-59310635 Msa0955300:CDS 45.0%
TTGTGGTTGTGATCGCAGAT+AGG + chr6_3:59310790-59310809 Msa0955300:intron 45.0%
CAATGCTCCTATTGGTGAAG+AGG + chr6_3:59311542-59311561 Msa0955300:CDS 45.0%
GCAGTTTCCTCTTCACCAAT+AGG - chr6_3:59311552-59311571 None:intergenic 45.0%
!! CAGTAGGTGTTGGAACTGTA+GGG + chr6_3:59311571-59311590 Msa0955300:CDS 45.0%
GTCATCAGAGGCAATAATGC+TGG + chr6_3:59311593-59311612 Msa0955300:CDS 45.0%
ATCAACCTGCACATTAGCTC+CGG - chr6_3:59311697-59311716 None:intergenic 45.0%
CAACCAAGCCAAACATGCTT+TGG + chr6_3:59311924-59311943 Msa0955300:intron 45.0%
!! GCCAGACAAGCACTTGTTTT+AGG + chr6_3:59312122-59312141 Msa0955300:intron 45.0%
GCCTAAAACAAGTGCTTGTC+TGG - chr6_3:59312126-59312145 None:intergenic 45.0%
GTCATTGTCCATTTCGTGTC+CGG - chr6_3:59312172-59312191 None:intergenic 45.0%
!! CTATGTGTGTAGTGGATGAG+TGG - chr6_3:59312314-59312333 None:intergenic 45.0%
!! TTAGTGGGCTATGTGTGTAG+TGG - chr6_3:59312322-59312341 None:intergenic 45.0%
!!! ATTTTGGGGCCTTTTCCCTT+AGG + chr6_3:59312511-59312530 Msa0955300:intron 45.0%
CAAATAAACCAGTCCAAGCG+GGG - chr6_3:59312537-59312556 None:intergenic 45.0%
AAGCTATCAGGGAGAGCTTA+TGG - chr6_3:59312659-59312678 None:intergenic 45.0%
! GAGAGGTTTAAGGCTACGTT+TGG - chr6_3:59312809-59312828 None:intergenic 45.0%
AAAGGAAGTGAAACTCACCG+AGG + chr6_3:59312893-59312912 Msa0955300:CDS 45.0%
CACCGAGGATTACTATGTGA+TGG + chr6_3:59312908-59312927 Msa0955300:CDS 45.0%
GGTCAACGTTGAACCCAAAA+TGG - chr6_3:59312985-59313004 None:intergenic 45.0%
CTTCACATCCTCAAACTCTC+CGG - chr6_3:59313006-59313025 None:intergenic 45.0%
CGGAAATCCCATAGAAGATC+AGG - chr6_3:59313131-59313150 None:intergenic 45.0%
!! AAGTACGGTCTTGTTTACCC+TGG + chr6_3:59313188-59313207 Msa0955300:CDS 45.0%
!! GGTCTTGTTTACCCTGGTAT+TGG + chr6_3:59313194-59313213 Msa0955300:CDS 45.0%
CAAACAACCCAACCAATACC+AGG - chr6_3:59313209-59313228 None:intergenic 45.0%
!! CTGGTATTGGTTGGGTTGTT+TGG + chr6_3:59313207-59313226 Msa0955300:CDS 45.0%
!! GTATTGGTTGGGTTGTTTGG+AGG + chr6_3:59313210-59313229 Msa0955300:CDS 45.0%
CGAAGCCAAGCCGTATAAAT+TGG - chr6_3:59313541-59313560 None:intergenic 45.0%
! ATTTATACGGCTTGGCTTCG+AGG + chr6_3:59313541-59313560 Msa0955300:CDS 45.0%
GGCGAACACAAGAATTCTGA+AGG + chr6_3:59313809-59313828 Msa0955300:CDS 45.0%
TTCAGAGAGAAGGCAACAAG+TGG - chr6_3:59313888-59313907 None:intergenic 45.0%
AGACTCACGCTGAGATTCTT+AGG + chr6_3:59314189-59314208 Msa0955300:CDS 45.0%
!!! TAAAATTATAAGTTATTTTA+TGG + chr6_3:59311016-59311035 Msa0955300:intron 5.0%
GGTGAAGAGGAAACTGCAGT+AGG + chr6_3:59311555-59311574 Msa0955300:CDS 50.0%
GAGGAAACTGCAGTAGGTGT+TGG + chr6_3:59311561-59311580 Msa0955300:CDS 50.0%
!! GCAGTAGGTGTTGGAACTGT+AGG + chr6_3:59311570-59311589 Msa0955300:CDS 50.0%
TGGAACTGTAGGGTCATCAG+AGG + chr6_3:59311581-59311600 Msa0955300:CDS 50.0%
TCAGAGGCAATAATGCTGGC+TGG + chr6_3:59311597-59311616 Msa0955300:CDS 50.0%
AGTTACCGGAGCTAATGTGC+AGG + chr6_3:59311689-59311708 Msa0955300:CDS 50.0%
! AGCTTTTGGCAAAATCGCGG+CGG + chr6_3:59311877-59311896 Msa0955300:intron 50.0%
CTCCCAAAGCATGTTTGGCT+TGG - chr6_3:59311930-59311949 None:intergenic 50.0%
! CAAGCCAAACATGCTTTGGG+AGG + chr6_3:59311928-59311947 Msa0955300:intron 50.0%
!! TCTGGCCTTACCTTTGGTTC+AGG - chr6_3:59312108-59312127 None:intergenic 50.0%
!! TGCTTGTCTGGCCTTACCTT+TGG - chr6_3:59312114-59312133 None:intergenic 50.0%
GTCCATGCTTCATAAGCCGA+AGG - chr6_3:59312148-59312167 None:intergenic 50.0%
GGCTTATGAAGCATGGACAC+CGG + chr6_3:59312150-59312169 Msa0955300:intron 50.0%
!!! CCTAGAAGCACCGTCACTTT+TGG - chr6_3:59312285-59312304 None:intergenic 50.0%
CCAAAAGTGACGGTGCTTCT+AGG + chr6_3:59312282-59312301 Msa0955300:intron 50.0%
!! GTGTAGTGGATGAGTGGAGT+AGG - chr6_3:59312308-59312327 None:intergenic 50.0%
!! TGCAATACTGTGCTGGTTCC+AGG - chr6_3:59312450-59312469 None:intergenic 50.0%
AACGTTGACCGGAGAGTTTG+AGG + chr6_3:59312995-59313014 Msa0955300:CDS 50.0%
CTCGCAGCATCTACGTGAAT+TGG - chr6_3:59313080-59313099 None:intergenic 50.0%
ATTCACGTAGATGCTGCGAG+TGG + chr6_3:59313080-59313099 Msa0955300:CDS 50.0%
ATGGGATTTCCGTTTGCCGT+TGG + chr6_3:59313139-59313158 Msa0955300:CDS 50.0%
!! GAGGCATAAAGCTGACTTGC+CGG + chr6_3:59313229-59313248 Msa0955300:CDS 50.0%
AAGTGGCACACCTATGTCCT+TGG - chr6_3:59313871-59313890 None:intergenic 50.0%
GCTGCTGTCTTTCAGAGAGA+AGG - chr6_3:59313898-59313917 None:intergenic 50.0%
TGTCCTCCGAGTGGTGATTA+GGG + chr6_3:59314010-59314029 Msa0955300:CDS 50.0%
GGAAGATTTCAGCTGCAGCT+TGG + chr6_3:59314031-59314050 Msa0955300:CDS 50.0%
CTTGTGGATGGCAAGAGAGT+TGG + chr6_3:59314224-59314243 Msa0955300:CDS 50.0%
CAAGAGAGTTGGAGCATGCT+AGG + chr6_3:59314235-59314254 Msa0955300:CDS 50.0%
TCCTGTCACCACTGAGCTTC+AGG + chr6_3:59310727-59310746 Msa0955300:CDS 55.0%
ACCTGAAGCTCAGTGGTGAC+AGG - chr6_3:59310731-59310750 None:intergenic 55.0%
CAGTAGCAGGCCTGAACCAA+AGG + chr6_3:59312095-59312114 Msa0955300:intron 55.0%
GCAGGCCTGAACCAAAGGTA+AGG + chr6_3:59312100-59312119 Msa0955300:intron 55.0%
GGCCTTCGGCTTATGAAGCA+TGG + chr6_3:59312143-59312162 Msa0955300:intron 55.0%
CATGGACACCGGACACGAAA+TGG + chr6_3:59312161-59312180 Msa0955300:intron 55.0%
!! CACATGTGTCGGTGTCGTGT+CGG + chr6_3:59312240-59312259 Msa0955300:intron 55.0%
GCGCCTTCGACCAAAAGTGA+CGG + chr6_3:59312272-59312291 Msa0955300:intron 55.0%
!!! GCACCGTCACTTTTGGTCGA+AGG - chr6_3:59312278-59312297 None:intergenic 55.0%
CTGTCCTCCGAGTGGTGATT+AGG + chr6_3:59314009-59314028 Msa0955300:CDS 55.0%
CTTCCCTAATCACCACTCGG+AGG - chr6_3:59314016-59314035 None:intergenic 55.0%
TATCGCGAGTGAGACAAGCG+AGG + chr6_3:59314145-59314164 Msa0955300:CDS 55.0%
!! CTTTTGGTCGAAGGCGCGTC+CGG - chr6_3:59312269-59312288 None:intergenic 60.0%
CAAGCGGGGCCTAAGGGAAA+AGG - chr6_3:59312523-59312542 None:intergenic 60.0%
! CTTTTCCCTTAGGCCCCGCT+TGG + chr6_3:59312521-59312540 Msa0955300:intron 60.0%
CACGTAGATGCTGCGAGTGG+CGG + chr6_3:59313083-59313102 Msa0955300:CDS 60.0%
TCCGGCCTACACAATGCCAG+CGG + chr6_3:59313971-59313990 Msa0955300:CDS 60.0%
TCCGCTGGCATTGTGTAGGC+CGG - chr6_3:59313975-59313994 None:intergenic 60.0%
TGCGTCCGCTGGCATTGTGT+AGG - chr6_3:59313979-59313998 None:intergenic 60.0%
! GCGATGTGTTTTGCGTCCGC+TGG - chr6_3:59313990-59314009 None:intergenic 60.0%
ACACATCGCTGTCCTCCGAG+TGG + chr6_3:59314001-59314020 Msa0955300:CDS 60.0%
!! GTCGGTGTCGTGTCGGACAC+CGG + chr6_3:59312247-59312266 Msa0955300:intron 65.0%
CCAGTCCAAGCGGGGCCTAA+GGG - chr6_3:59312529-59312548 None:intergenic 65.0%
ACCAGTCCAAGCGGGGCCTA+AGG - chr6_3:59312530-59312549 None:intergenic 65.0%
CCCTTAGGCCCCGCTTGGAC+TGG + chr6_3:59312526-59312545 Msa0955300:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 59310161 59314485 59310161 ID=Msa0955300;Name=Msa0955300
chr6_3 mRNA 59310161 59314485 59310161 ID=Msa0955300-mRNA-1;Parent=Msa0955300;Name=Msa0955300-mRNA-1;_AED=0.30;_eAED=0.30;_QI=185|0.8|0.83|1|1|1|6|229|488
chr6_3 exon 59310161 59310440 59310161 ID=Msa0955300-mRNA-1:exon:11724;Parent=Msa0955300-mRNA-1
chr6_3 exon 59310544 59310748 59310544 ID=Msa0955300-mRNA-1:exon:11725;Parent=Msa0955300-mRNA-1
chr6_3 exon 59311510 59311710 59311510 ID=Msa0955300-mRNA-1:exon:11726;Parent=Msa0955300-mRNA-1
chr6_3 exon 59312885 59313320 59312885 ID=Msa0955300-mRNA-1:exon:11727;Parent=Msa0955300-mRNA-1
chr6_3 exon 59313510 59313562 59313510 ID=Msa0955300-mRNA-1:exon:11728;Parent=Msa0955300-mRNA-1
chr6_3 exon 59313780 59314485 59313780 ID=Msa0955300-mRNA-1:exon:11729;Parent=Msa0955300-mRNA-1
chr6_3 five_prime_UTR 59310161 59310345 59310161 ID=Msa0955300-mRNA-1:five_prime_utr;Parent=Msa0955300-mRNA-1
chr6_3 CDS 59310346 59310440 59310346 ID=Msa0955300-mRNA-1:cds;Parent=Msa0955300-mRNA-1
chr6_3 CDS 59310544 59310748 59310544 ID=Msa0955300-mRNA-1:cds;Parent=Msa0955300-mRNA-1
chr6_3 CDS 59311510 59311710 59311510 ID=Msa0955300-mRNA-1:cds;Parent=Msa0955300-mRNA-1
chr6_3 CDS 59312885 59313320 59312885 ID=Msa0955300-mRNA-1:cds;Parent=Msa0955300-mRNA-1
chr6_3 CDS 59313510 59313562 59313510 ID=Msa0955300-mRNA-1:cds;Parent=Msa0955300-mRNA-1
chr6_3 CDS 59313780 59314256 59313780 ID=Msa0955300-mRNA-1:cds;Parent=Msa0955300-mRNA-1
chr6_3 three_prime_UTR 59314257 59314485 59314257 ID=Msa0955300-mRNA-1:three_prime_utr;Parent=Msa0955300-mRNA-1
Gene Sequence

>Msa0955300

ATGGTGATTTCTTCAACTGTCACACATCCAGATGAACAAAACCAGACCATAGCATGCACTTTTGCTTCTAGATACGTGCGTGAACAGGTTCCTAAGTTCAAGATGCCAGAGAATTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGACGGAAAACCAAGGCTTAACTTGGCTTCATTTGTGACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCACTTAACAAGAATTATGTTGATATGGATGAATATCCTGTCACCACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTGAAGAGGAAACTGCAGTAGGTGTTGGAACTGTAGGGTCATCAGAGGCAATAATGCTGGCTGGTTTAGCTTTTAAAAGGAAGTGGCAGACTAAGAGAAAATCGGAAGGCAAACCATATGATAAGCCTAACATAGTTACCGGAGCTAATGTGCAGGTTGAGCTAAAGGAAGTGAAACTCACCGAGGATTACTATGTGATGGATCCATTGAAAGCTGTTGAAATGGTAGATGAGAACACCATATGTGTTGCAGCCATTTTGGGTTCAACGTTGACCGGAGAGTTTGAGGATGTGAAGCTTCTCAACGAACTTCTTACTAAAAAGAACAAGGAGACAGGATGGGATACACCAATTCACGTAGATGCTGCGAGTGGCGGATTTGTTGCTCCGTTTCTCTACCCTGATCTTCTATGGGATTTCCGTTTGCCGTTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTTTGGAGGCATAAAGCTGACTTGCCGGATGATCTTGTTTTTCACATCAATTATCTTGGATCTGATCAACCAACTTTCACGTTGAATTTCTCCAAAGGGTCGAGTCAAATCATTGCTCAATACTACCAATTTATACGGCTTGGCTTCGAGGGCTACAAAAATGTGATGGAAAATTGCTTGGCGAACACAAGAATTCTGAAGGAAGGAATTGAGAAAACAGGAAGGTTTAAAATTGTCTCCAAGGACATAGGTGTGCCACTTGTTGCCTTCTCTCTGAAAGACAGCAGCAAACACACAGTGTTCGAGATAGCAGACCATTTGAGAAAATACGGGTGGATAGTTCCGGCCTACACAATGCCAGCGGACGCAAAACACATCGCTGTCCTCCGAGTGGTGATTAGGGAAGATTTCAGCTGCAGCTTGGCTGAGAGACTTGTTTCTGACATAGAAAAAGTTGTGAATCTCTTGGACACACTTCCAAGTTCTATCAATTCAAAAGATGCTCATGTTGCGGTTATCGCGAGTGAGACAAGCGAGGAAGTTAAGAAAGATATTACAGAGACTCACGCTGAGATTCTTAGGTATTGGAAGAAGCTTGTGGATGGCAAGAGAGTTGGAGCATGCTAG

Protein sequence

>Msa0955300

MVISSTVTHPDEQNQTIACTFASRYVREQVPKFKMPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVELKEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRHKADLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCLANTRILKEGIEKTGRFKIVSKDIGVPLVAFSLKDSSKHTVFEIADHLRKYGWIVPAYTMPADAKHIAVLRVVIREDFSCSLAERLVSDIEKVVNLLDTLPSSINSKDAHVAVIASETSEEVKKDITETHAEILRYWKKLVDGKRVGAC*