Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793720 | AFK39328.1 | 84.553 | 123 | 14 | 1 | 1 | 118 | 1 | 123 | 8.03e-66 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793720 | I3SGD6 | 84.553 | 123 | 14 | 1 | 1 | 118 | 1 | 123 | 3.83e-66 | 208 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032370 | Msa0793720 | 0.805802 | 1.119633e-49 | -8.615850e-47 |
| Msa0032840 | Msa0793720 | -0.801073 | 1.069610e-48 | -8.615850e-47 |
| Msa0073670 | Msa0793720 | 0.801968 | 7.009593e-49 | -8.615850e-47 |
| Msa0094010 | Msa0793720 | 0.802502 | 5.442154e-49 | -8.615850e-47 |
| Msa0095380 | Msa0793720 | 0.814724 | 1.331822e-51 | -8.615850e-47 |
| Msa0113160 | Msa0793720 | 0.810423 | 1.161462e-50 | -8.615850e-47 |
| Msa0114540 | Msa0793720 | -0.808913 | 2.451272e-50 | -8.615850e-47 |
| Msa0607290 | Msa0793720 | -0.801409 | 9.128684e-49 | -8.615850e-47 |
| Msa0609450 | Msa0793720 | 0.800109 | 1.681392e-48 | -8.615850e-47 |
| Msa0620810 | Msa0793720 | 0.811352 | 7.308359e-51 | -8.615850e-47 |
| Msa0625790 | Msa0793720 | 0.802874 | 4.561463e-49 | -8.615850e-47 |
| Msa0627910 | Msa0793720 | 0.818429 | 1.969553e-52 | -8.615850e-47 |
| Msa0639120 | Msa0793720 | 0.811741 | 6.016254e-51 | -8.615850e-47 |
| Msa0642720 | Msa0793720 | 0.806460 | 8.138161e-50 | -8.615850e-47 |
| Msa0647380 | Msa0793720 | 0.810811 | 9.573083e-51 | -8.615850e-47 |
| Msa0669850 | Msa0793720 | 0.804956 | 1.684187e-49 | -8.615850e-47 |
| Msa0692080 | Msa0793720 | 0.800969 | 1.123250e-48 | -8.615850e-47 |
| Msa0711490 | Msa0793720 | 0.842821 | 2.045775e-58 | -8.615850e-47 |
| Msa0787750 | Msa0793720 | 0.805995 | 1.019608e-49 | -8.615850e-47 |
| Msa0793720 | Msa0814250 | 0.802219 | 6.222891e-49 | -8.615850e-47 |
| Msa0793720 | Msa0824640 | 0.802227 | 6.199325e-49 | -8.615850e-47 |
| Msa0793720 | Msa0864010 | 0.804035 | 2.620627e-49 | -8.615850e-47 |
| Msa0793720 | Msa0866120 | 0.823266 | 1.519315e-53 | -8.615850e-47 |
| Msa0793720 | Msa0930780 | 0.800019 | 1.753785e-48 | -8.615850e-47 |
| Msa0793720 | Msa0993530 | 0.820745 | 5.830198e-53 | -8.615850e-47 |
| Msa0793720 | Msa1022970 | 0.810341 | 1.209622e-50 | -8.615850e-47 |
| Msa0793720 | Msa1109570 | 0.827496 | 1.515084e-54 | -8.615850e-47 |
| Msa0793720 | Msa1127830 | 0.801877 | 7.318742e-49 | -8.615850e-47 |
| Msa0793720 | Msa1175330 | 0.808870 | 2.503825e-50 | -8.615850e-47 |
| Msa0793720 | Msa1179970 | 0.800309 | 1.530839e-48 | -8.615850e-47 |
| Msa0793720 | Msa1185540 | 0.808820 | 2.566417e-50 | -8.615850e-47 |
| Msa0793720 | Msa1199290 | 0.820696 | 5.984078e-53 | -8.615850e-47 |
| Msa0793720 | Msa1228890 | 0.820666 | 6.080201e-53 | -8.615850e-47 |
| Msa0793720 | Msa1235630 | 0.806842 | 6.759799e-50 | -8.615850e-47 |
| Msa0793720 | Msa1236100 | 0.801877 | 7.318742e-49 | -8.615850e-47 |
| Msa0793720 | Msa1237030 | 0.813371 | 2.647237e-51 | -8.615850e-47 |
| Msa0793720 | Msa1243040 | 0.803065 | 4.163337e-49 | -8.615850e-47 |
| Msa0793720 | Msa1265260 | 0.802644 | 5.086545e-49 | -8.615850e-47 |
| Msa0793720 | Msa1267840 | 0.804765 | 1.846425e-49 | -8.615850e-47 |
| Msa0793720 | Msa1283990 | 0.815214 | 1.036539e-51 | -8.615850e-47 |
| Msa0793720 | Msa1299360 | 0.833035 | 6.721158e-56 | -8.615850e-47 |
| Msa0793720 | Msa1315870 | 0.822702 | 2.057092e-53 | -8.615850e-47 |
| Msa0793720 | Msa1323950 | 0.804569 | 2.028262e-49 | -8.615850e-47 |
| Msa0793720 | Msa1337730 | 0.817294 | 3.552384e-52 | -8.615850e-47 |
| Msa0793720 | Msa1362510 | 0.805713 | 1.168638e-49 | -8.615850e-47 |
| Msa0793720 | Msa1365150 | 0.803780 | 2.960721e-49 | -8.615850e-47 |
| Msa0793720 | Msa1373330 | 0.822031 | 2.944756e-53 | -8.615850e-47 |
| Msa0793720 | Msa1373510 | 0.811965 | 5.377614e-51 | -8.615850e-47 |
| Msa0793720 | Msa1390310 | 0.804788 | 1.825852e-49 | -8.615850e-47 |
| Msa0793720 | Msa1397050 | 0.814994 | 1.160422e-51 | -8.615850e-47 |
| Msa0793720 | Msa1398860 | 0.806205 | 9.208252e-50 | -8.615850e-47 |
| Msa0793720 | Msa1408790 | 0.803357 | 3.624036e-49 | -8.615850e-47 |
| Msa0793720 | Msa1435750 | 0.807046 | 6.121174e-50 | -8.615850e-47 |
| Msa0793720 | Msa1438640 | 0.802743 | 4.853135e-49 | -8.615850e-47 |
| Msa0793720 | Msa1452470 | 0.804309 | 2.298364e-49 | -8.615850e-47 |
| Msa0793720 | Msa1466460 | 0.800293 | 1.542345e-48 | -8.615850e-47 |
| Msa0152840 | Msa0793720 | 0.800654 | 1.302005e-48 | -8.615850e-47 |
| Msa0183590 | Msa0793720 | 0.802122 | 6.518004e-49 | -8.615850e-47 |
| Msa0193890 | Msa0793720 | 0.800486 | 1.408932e-48 | -8.615850e-47 |
| Msa0222920 | Msa0793720 | 0.826332 | 2.875680e-54 | -8.615850e-47 |
| Msa0380040 | Msa0793720 | 0.811013 | 8.654440e-51 | -8.615850e-47 |
| Msa0392070 | Msa0793720 | 0.809364 | 1.963027e-50 | -8.615850e-47 |
| Msa0392940 | Msa0793720 | 0.840145 | 1.037234e-57 | -8.615850e-47 |
| Msa0403190 | Msa0793720 | 0.808025 | 3.793229e-50 | -8.615850e-47 |
| Msa0429290 | Msa0793720 | 0.809477 | 1.856098e-50 | -8.615850e-47 |
| Msa0449820 | Msa0793720 | 0.813944 | 1.980251e-51 | -8.615850e-47 |
| Msa0462990 | Msa0793720 | 0.800227 | 1.591042e-48 | -8.615850e-47 |
| Msa0469910 | Msa0793720 | -0.825461 | 4.629679e-54 | -8.615850e-47 |
| Msa0475580 | Msa0793720 | 0.807905 | 4.022228e-50 | -8.615850e-47 |
| Msa0241800 | Msa0793720 | 0.822286 | 2.569431e-53 | -8.615850e-47 |
| Msa0299890 | Msa0793720 | 0.802855 | 4.602373e-49 | -8.615850e-47 |
| Msa0302450 | Msa0793720 | 0.814100 | 1.829241e-51 | -8.615850e-47 |
| Msa0304920 | Msa0793720 | 0.802013 | 6.862588e-49 | -8.615850e-47 |
| Msa0328210 | Msa0793720 | 0.808511 | 2.988592e-50 | -8.615850e-47 |
| Msa0517490 | Msa0793720 | 0.802596 | 5.205201e-49 | -8.615850e-47 |
| Msa0519220 | Msa0793720 | 0.817788 | 2.749527e-52 | -8.615850e-47 |
| Msa0535030 | Msa0793720 | 0.806602 | 7.597106e-50 | -8.615850e-47 |
| Msa0535060 | Msa0793720 | 0.803664 | 3.128651e-49 | -8.615850e-47 |
| Msa0546300 | Msa0793720 | 0.821224 | 4.524664e-53 | -8.615850e-47 |
| Msa0560470 | Msa0793720 | 0.800085 | 1.700843e-48 | -8.615850e-47 |
| Msa0579720 | Msa0793720 | 0.957805 | 1.113308e-115 | -8.615850e-47 |
| Msa0585900 | Msa0793720 | 0.804631 | 1.969393e-49 | -8.615850e-47 |
| Msa0591060 | Msa0793720 | 0.813727 | 2.211253e-51 | -8.615850e-47 |
| Msa0591540 | Msa0793720 | 0.805532 | 1.275828e-49 | -8.615850e-47 |
| Msa0591770 | Msa0793720 | 0.810557 | 1.086618e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793720 | MtrunA17_Chr5g0394561 | 84.553 | 123 | 14 | 1 | 1 | 118 | 1 | 123 | 3.69e-69 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTGTTAAGAATGAATT+AGG | 0.250316 | 5_3:-5596571 | Msa0793720:three_prime_UTR |
| TGATGAATTTAGTACCCTTT+TGG | 0.283432 | 5_3:+5598970 | None:intergenic |
| TCAGAGAAAATGATAGTAAT+TGG | 0.286768 | 5_3:+5597366 | None:intergenic |
| AATAATTATTCTTTGTTAGT+AGG | 0.294269 | 5_3:-5596914 | Msa0793720:three_prime_UTR |
| GTAGAAACTAGCCTATTAAA+TGG | 0.295916 | 5_3:-5597043 | Msa0793720:three_prime_UTR |
| TCTCTTTCTCTTAAACTTGC+TGG | 0.314804 | 5_3:+5597286 | None:intergenic |
| TTCCTTATCTTACTTGCAAC+AGG | 0.317413 | 5_3:+5596994 | None:intergenic |
| CTTCATTGTGTTGCCTTTGA+AGG | 0.318291 | 5_3:-5596763 | Msa0793720:three_prime_UTR |
| CGCTGATCGCTAGTTTGTTT+AGG | 0.326950 | 5_3:+5599059 | None:intergenic |
| AGCGAAGCAGGCAGGCAGGC+AGG | 0.340296 | 5_3:-5599040 | Msa0793720:five_prime_UTR |
| ATTCACTTGATGAACACTTT+TGG | 0.345424 | 5_3:-5597404 | Msa0793720:CDS |
| ATCACTCCAATCCATTTAAT+AGG | 0.345839 | 5_3:+5597032 | None:intergenic |
| AGATGGAGATGTAGAGAGTA+TGG | 0.346250 | 5_3:-5597233 | Msa0793720:three_prime_UTR |
| AAACTGCATCTTTAACAAAC+TGG | 0.356424 | 5_3:+5596588 | None:intergenic |
| AACAAACTGGAAACTGTAGA+TGG | 0.360982 | 5_3:+5596490 | None:intergenic |
| AACAAACTGGAAACTGTAGA+TGG | 0.360982 | 5_3:+5596601 | None:intergenic |
| TGAAGAATGTTTACCTCATC+AGG | 0.361386 | 5_3:+5598556 | None:intergenic |
| CAGCTGCATCTTTAACAAAC+TGG | 0.373302 | 5_3:+5596477 | None:intergenic |
| CCTTACAAAACCGGCTTGTA+AGG | 0.389747 | 5_3:+5596692 | None:intergenic |
| AGGCAGGCAGGCAACGTAAT+GGG | 0.394986 | 5_3:-5599028 | Msa0793720:exon |
| GCTCATTCACAAATTTGAAA+TGG | 0.398125 | 5_3:-5597316 | Msa0793720:three_prime_UTR |
| AACAACTTCTCATTTCCAAA+AGG | 0.412565 | 5_3:-5598985 | Msa0793720:CDS |
| TGCAGATCACATTCTTTCAC+TGG | 0.418252 | 5_3:-5597484 | Msa0793720:CDS |
| GATCAGCGAAGCAGGCAGGC+AGG | 0.419897 | 5_3:-5599044 | Msa0793720:five_prime_UTR |
| AACTAGCCTATTAAATGGAT+TGG | 0.433028 | 5_3:-5597038 | Msa0793720:three_prime_UTR |
| TTCATTGTGTTGCCTTTGAA+GGG | 0.441300 | 5_3:-5596762 | Msa0793720:three_prime_UTR |
| AATTTCTCTCACCTGCTGTA+AGG | 0.454722 | 5_3:+5597636 | None:intergenic |
| TCGGGTGCTGCTGCATGGAC+AGG | 0.461240 | 5_3:-5598484 | Msa0793720:intron |
| CTGACTCATCCTTACAAAAC+CGG | 0.462771 | 5_3:+5596683 | None:intergenic |
| CAAGTTTCTGTTAGCAATGT+GGG | 0.470547 | 5_3:+5596728 | None:intergenic |
| CAACACAATGAAGGGTTTGA+AGG | 0.475112 | 5_3:+5596773 | None:intergenic |
| CAGGCAGGCAGGCAACGTAA+TGG | 0.476197 | 5_3:-5599029 | Msa0793720:exon |
| GGGTTTGAAGGCTGCAATGA+AGG | 0.483149 | 5_3:+5596785 | None:intergenic |
| TTCTCTTAAACTTGCTGGAG+AGG | 0.485869 | 5_3:+5597291 | None:intergenic |
| CTTCAAAGGCAACACAATGA+AGG | 0.490759 | 5_3:+5596764 | None:intergenic |
| TATTTAACCTACGAAGGGGT+TGG | 0.493546 | 5_3:+5597194 | None:intergenic |
| ACAACTTCTCATTTCCAAAA+GGG | 0.495370 | 5_3:-5598984 | Msa0793720:intron |
| ATGCCGCGATTAAGCGAGTA+GGG | 0.497323 | 5_3:+5596821 | None:intergenic |
| AGCAATATAGAGACTGTAGA+TGG | 0.497945 | 5_3:-5597250 | Msa0793720:three_prime_UTR |
| AAATATCCTCAGTCCACAAA+AGG | 0.500662 | 5_3:+5597527 | None:intergenic |
| AAACTAGCGATCAGCGAAGC+AGG | 0.508176 | 5_3:-5599052 | Msa0793720:five_prime_UTR |
| AAGTAAGATAAGGAAACCTT+AGG | 0.510580 | 5_3:-5596986 | Msa0793720:three_prime_UTR |
| CTTACTGTGTTCTGTACCAT+AGG | 0.510901 | 5_3:-5597142 | Msa0793720:three_prime_UTR |
| TTGTTTCGGGTGCTGCTGCA+TGG | 0.518260 | 5_3:-5598489 | Msa0793720:CDS |
| TTGTGTTGCCTTTGAAGGGG+TGG | 0.519382 | 5_3:-5596758 | Msa0793720:three_prime_UTR |
| TTTCAAGTTAACCTTACAGC+AGG | 0.521889 | 5_3:-5597647 | Msa0793720:intron |
| GACTAAATCCACCCCTTCAA+AGG | 0.525477 | 5_3:+5596750 | None:intergenic |
| ATTTGTTATAATACGTACTC+AGG | 0.537041 | 5_3:+5597339 | None:intergenic |
| TAGCGATCAGCGAAGCAGGC+AGG | 0.541579 | 5_3:-5599048 | Msa0793720:five_prime_UTR |
| ACCCTGTTGCAAGTAAGATA+AGG | 0.544458 | 5_3:-5596996 | Msa0793720:three_prime_UTR |
| ACGGCAGTAACTGGGAGACT+TGG | 0.544989 | 5_3:-5597677 | Msa0793720:intron |
| TTCAAAGGCAACACAATGAA+GGG | 0.546711 | 5_3:+5596765 | None:intergenic |
| ACAAACTGGAAACTGTAGAT+GGG | 0.551430 | 5_3:+5596491 | None:intergenic |
| ACAAACTGGAAACTGTAGAT+GGG | 0.551430 | 5_3:+5596602 | None:intergenic |
| CAATATAAAATCTGATAGCA+TGG | 0.555571 | 5_3:-5596546 | Msa0793720:three_prime_UTR |
| GTTCCTTTACGGCAGTAACT+GGG | 0.559706 | 5_3:-5597685 | Msa0793720:intron |
| ACTCTACCAAGTGCGTCCTA+AGG | 0.560325 | 5_3:+5596970 | None:intergenic |
| TGGAAATTCTGCCTTCATTG+TGG | 0.561423 | 5_3:-5596849 | Msa0793720:three_prime_UTR |
| GTAGGGGCGGACCACAATGA+AGG | 0.564894 | 5_3:+5596838 | None:intergenic |
| AGCCCTCTCACCTTACAAGC+CGG | 0.566268 | 5_3:-5596702 | Msa0793720:three_prime_UTR |
| GGCTCTATTTAACCTACGAA+GGG | 0.578290 | 5_3:+5597189 | None:intergenic |
| CGCGATTAAGCGAGTAGGGG+CGG | 0.579817 | 5_3:+5596825 | None:intergenic |
| GACATTGATTTGTCACACAA+AGG | 0.582985 | 5_3:+5597092 | None:intergenic |
| GTGATCTGCAGAAGAATACA+AGG | 0.587623 | 5_3:+5597497 | None:intergenic |
| TTCACTTCAAATAAACGTCT+AGG | 0.589744 | 5_3:+5596889 | None:intergenic |
| TCCTTATCTTACTTGCAACA+GGG | 0.596546 | 5_3:+5596995 | None:intergenic |
| AACCGGCTTGTAAGGTGAGA+GGG | 0.600933 | 5_3:+5596700 | None:intergenic |
| AGGAAACCTTAGGACGCACT+TGG | 0.603736 | 5_3:-5596976 | Msa0793720:three_prime_UTR |
| AGAGTATGGAATGAATGTAG+AGG | 0.609023 | 5_3:-5597219 | Msa0793720:three_prime_UTR |
| GGCAAAATTGACACCTGATG+AGG | 0.610013 | 5_3:-5598569 | Msa0793720:CDS |
| GAATTGAGAACAACATGTGT+TGG | 0.611077 | 5_3:-5596869 | Msa0793720:three_prime_UTR |
| AATGCCGCGATTAAGCGAGT+AGG | 0.613675 | 5_3:+5596820 | None:intergenic |
| TCATTGTGTTGCCTTTGAAG+GGG | 0.617589 | 5_3:-5596761 | Msa0793720:three_prime_UTR |
| TCAAGTTTCTGTTAGCAATG+TGG | 0.617853 | 5_3:+5596727 | None:intergenic |
| GATCACATTCTTTCACTGGA+CGG | 0.618350 | 5_3:-5597480 | Msa0793720:CDS |
| TGGCTCTATTTAACCTACGA+AGG | 0.619644 | 5_3:+5597188 | None:intergenic |
| AAACCGGCTTGTAAGGTGAG+AGG | 0.623481 | 5_3:+5596699 | None:intergenic |
| CAAACTGGAAACTGTAGATG+GGG | 0.623862 | 5_3:+5596492 | None:intergenic |
| CAAACTGGAAACTGTAGATG+GGG | 0.623862 | 5_3:+5596603 | None:intergenic |
| ACTGTGTTCTGTACCATAGG+TGG | 0.624270 | 5_3:-5597139 | Msa0793720:three_prime_UTR |
| GGACGGCAGTACATTACAGA+AGG | 0.634546 | 5_3:-5597463 | Msa0793720:CDS |
| AGAGGATCCAACCCCTTCGT+AGG | 0.638072 | 5_3:-5597201 | Msa0793720:three_prime_UTR |
| CGCCCCTACTCGCTTAATCG+CGG | 0.640895 | 5_3:-5596824 | Msa0793720:three_prime_UTR |
| TGCCGCGATTAAGCGAGTAG+GGG | 0.697980 | 5_3:+5596822 | None:intergenic |
| GCTCTATTTAACCTACGAAG+GGG | 0.698435 | 5_3:+5597190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACAGCTTATATTTTAT+AGG | - | chr5_3:5596839-5596858 | Msa0793720:three_prime_UTR | 15.0% |
| !! | CAAATAGAATAAAGTTAAAT+TGG | + | chr5_3:5596868-5596887 | None:intergenic | 15.0% |
| !! | GAAATAAGATTAATTGTAAA+AGG | + | chr5_3:5597150-5597169 | None:intergenic | 15.0% |
| !! | AATAATTATTCTTTGTTAGT+AGG | - | chr5_3:5598668-5598687 | Msa0793720:intron | 15.0% |
| !!! | TACAATTAATCTTATTTCCA+TGG | - | chr5_3:5597152-5597171 | Msa0793720:three_prime_UTR | 20.0% |
| !! | TGAATTTAAGAGATAAGTAT+TGG | + | chr5_3:5597492-5597511 | None:intergenic | 20.0% |
| !!! | ATGCTATCAGATTTTATATT+GGG | + | chr5_3:5598926-5598945 | None:intergenic | 20.0% |
| !!! | ATGCTATCAGATTTTATATT+GGG | + | chr5_3:5598926-5598945 | None:intergenic | 20.0% |
| ! | AGAAATTAGAAACAAAACAG+TGG | + | chr5_3:5596652-5596671 | None:intergenic | 25.0% |
| ! | CATACTCAAATATGATAAGA+AGG | + | chr5_3:5596726-5596745 | None:intergenic | 25.0% |
| ! | TTTGAGTATGAATTTGATCA+TGG | - | chr5_3:5596736-5596755 | Msa0793720:three_prime_UTR | 25.0% |
| ! | TTGAGTATGAATTTGATCAT+GGG | - | chr5_3:5596737-5596756 | Msa0793720:three_prime_UTR | 25.0% |
| !!! | TTGTGTATAAGCTTTTTCTA+TGG | + | chr5_3:5596894-5596913 | None:intergenic | 25.0% |
| !! | TTTTTAACATAAGCTCTGTT+TGG | + | chr5_3:5596941-5596960 | None:intergenic | 25.0% |
| ! | GTAGTTTATGTAAATCTAAC+TGG | - | chr5_3:5597220-5597239 | Msa0793720:three_prime_UTR | 25.0% |
| ! | AAGATACAAAATGCAATAAC+CGG | + | chr5_3:5597290-5597309 | None:intergenic | 25.0% |
| ! | TAAATTCATCCACTTTAAGT+TGG | - | chr5_3:5597504-5597523 | Msa0793720:CDS | 25.0% |
| ! | TCTTGAATGTCAATGATAAT+AGG | - | chr5_3:5597535-5597554 | Msa0793720:CDS | 25.0% |
| ! | AGGAAAAGAAATCAACTATA+TGG | + | chr5_3:5597835-5597854 | None:intergenic | 25.0% |
| ! | TGATAATCATTGTTCCTTTA+CGG | - | chr5_3:5597886-5597905 | Msa0793720:intron | 25.0% |
| ! | AAAACAACAAACATGAAGAA+TGG | + | chr5_3:5598014-5598033 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTTATCATTTTGC+AGG | - | chr5_3:5598024-5598043 | Msa0793720:intron | 25.0% |
| ! | TCAGAGAAAATGATAGTAAT+TGG | + | chr5_3:5598219-5598238 | None:intergenic | 25.0% |
| !!! | ATTTGTTATAATACGTACTC+AGG | + | chr5_3:5598246-5598265 | None:intergenic | 25.0% |
| !!! | CCATTGTAGTTTTATTTTTG+TGG | + | chr5_3:5598469-5598488 | None:intergenic | 25.0% |
| ! | CCACAAAAATAAAACTACAA+TGG | - | chr5_3:5598466-5598485 | Msa0793720:intron | 25.0% |
| !!! | AATGATGAGTTTTATGAATG+AGG | - | chr5_3:5598644-5598663 | Msa0793720:intron | 25.0% |
| !! | CATGCTATCAGATTTTATAT+TGG | + | chr5_3:5598927-5598946 | None:intergenic | 25.0% |
| !! | GTCAAATTTTGCAATTCAAA+TGG | + | chr5_3:5598960-5598979 | None:intergenic | 25.0% |
| !!! | CAGTTTGTTAAGAATGAATT+AGG | - | chr5_3:5599011-5599030 | Msa0793720:CDS | 25.0% |
| !! | CATGCTATCAGATTTTATAT+TGG | + | chr5_3:5598927-5598946 | None:intergenic | 25.0% |
| ! | CAATATAAAATCTGATAGCA+TGG | - | chr5_3:5598925-5598944 | Msa0793720:intron | 25.0% |
| AACAACTTCTCATTTCCAAA+AGG | - | chr5_3:5596597-5596616 | Msa0793720:three_prime_UTR | 30.0% | |
| ACAACTTCTCATTTCCAAAA+GGG | - | chr5_3:5596598-5596617 | Msa0793720:three_prime_UTR | 30.0% | |
| ! | TGATGAATTTAGTACCCTTT+TGG | + | chr5_3:5596615-5596634 | None:intergenic | 30.0% |
| ! | GAAGAATGTCATAAGCTTTT+TGG | + | chr5_3:5596770-5596789 | None:intergenic | 30.0% |
| !!! | GTTCTGACTCTTTATTTTCT+AGG | - | chr5_3:5596992-5597011 | Msa0793720:three_prime_UTR | 30.0% |
| !!! | CACTCTTTTTTCACTTGTTT+CGG | - | chr5_3:5597079-5597098 | Msa0793720:three_prime_UTR | 30.0% |
| !!! | ACTCTTTTTTCACTTGTTTC+GGG | - | chr5_3:5597080-5597099 | Msa0793720:three_prime_UTR | 30.0% |
| ! | TGCATACAATTTCCTGATTT+TGG | - | chr5_3:5597175-5597194 | Msa0793720:three_prime_UTR | 30.0% |
| AGATAACATGTTCCAAAATC+AGG | + | chr5_3:5597190-5597209 | None:intergenic | 30.0% | |
| ATGTAAATCTAACTGGTAAC+TGG | - | chr5_3:5597227-5597246 | Msa0793720:three_prime_UTR | 30.0% | |
| GATCATAGTTGCATGAATTT+AGG | - | chr5_3:5597435-5597454 | Msa0793720:CDS | 30.0% | |
| ATACAATACGAAGAAGAGAA+AGG | - | chr5_3:5597463-5597482 | Msa0793720:CDS | 30.0% | |
| AGAATCAAACCAACTTAAAG+TGG | + | chr5_3:5597516-5597535 | None:intergenic | 30.0% | |
| ATTCTTTCCCAATTCTAGAT+GGG | - | chr5_3:5597574-5597593 | Msa0793720:intron | 30.0% | |
| AATCTCAATGAGAAGATACT+TGG | + | chr5_3:5597638-5597657 | None:intergenic | 30.0% | |
| TCATGATGTTAAGGTAATAC+AGG | + | chr5_3:5597706-5597725 | None:intergenic | 30.0% | |
| ACGATAACATCATGATGTTA+AGG | + | chr5_3:5597715-5597734 | None:intergenic | 30.0% | |
| ! | ATTCACTTGATGAACACTTT+TGG | - | chr5_3:5598178-5598197 | Msa0793720:intron | 30.0% |
| GCTCATTCACAAATTTGAAA+TGG | - | chr5_3:5598266-5598285 | Msa0793720:intron | 30.0% | |
| ACACAGTAAGCAGTAAAAAA+AGG | + | chr5_3:5598430-5598449 | None:intergenic | 30.0% | |
| ! | GTAGAAACTAGCCTATTAAA+TGG | - | chr5_3:5598539-5598558 | Msa0793720:CDS | 30.0% |
| ! | AACTAGCCTATTAAATGGAT+TGG | - | chr5_3:5598544-5598563 | Msa0793720:CDS | 30.0% |
| ATCACTCCAATCCATTTAAT+AGG | + | chr5_3:5598553-5598572 | None:intergenic | 30.0% | |
| AAGTAAGATAAGGAAACCTT+AGG | - | chr5_3:5598596-5598615 | Msa0793720:intron | 30.0% | |
| TTCACTTCAAATAAACGTCT+AGG | + | chr5_3:5598696-5598715 | None:intergenic | 30.0% | |
| AAACTGCATCTTTAACAAAC+TGG | + | chr5_3:5598997-5599016 | None:intergenic | 30.0% | |
| ! | GTCATGTTTTGCAATTCAAA+TGG | + | chr5_3:5599071-5599090 | None:intergenic | 30.0% |
| TGAAGAATGTTTACCTCATC+AGG | + | chr5_3:5597029-5597048 | None:intergenic | 35.0% | |
| ! | ATCTAACTGGTAACTGGTTT+AGG | - | chr5_3:5597233-5597252 | Msa0793720:three_prime_UTR | 35.0% |
| ATGTCACAAGCAATTAATCC+TGG | - | chr5_3:5597413-5597432 | Msa0793720:CDS | 35.0% | |
| AATTCATGCAACTATGATCC+AGG | + | chr5_3:5597434-5597453 | None:intergenic | 35.0% | |
| TAGAATTGGGAAAGAATGAG+TGG | + | chr5_3:5597571-5597590 | None:intergenic | 35.0% | |
| CATTCTTTCCCAATTCTAGA+TGG | - | chr5_3:5597573-5597592 | Msa0793720:intron | 35.0% | |
| TTCTTTCCCAATTCTAGATG+GGG | - | chr5_3:5597575-5597594 | Msa0793720:intron | 35.0% | |
| !! | TTTCAAGTTAACCTTACAGC+AGG | - | chr5_3:5597935-5597954 | Msa0793720:intron | 35.0% |
| CAAACATGAAGAATGGAATG+AGG | + | chr5_3:5598007-5598026 | None:intergenic | 35.0% | |
| AAATATCCTCAGTCCACAAA+AGG | + | chr5_3:5598058-5598077 | None:intergenic | 35.0% | |
| TCTCTTTCTCTTAAACTTGC+TGG | + | chr5_3:5598299-5598318 | None:intergenic | 35.0% | |
| AGCAATATAGAGACTGTAGA+TGG | - | chr5_3:5598332-5598351 | Msa0793720:intron | 35.0% | |
| AGAGTATGGAATGAATGTAG+AGG | - | chr5_3:5598363-5598382 | Msa0793720:intron | 35.0% | |
| TAAAAAAAGGTCTAGCTGAC+TGG | + | chr5_3:5598417-5598436 | None:intergenic | 35.0% | |
| !!! | TTTATTTTTGTGGCCACCTA+TGG | + | chr5_3:5598459-5598478 | None:intergenic | 35.0% |
| !! | GACATTGATTTGTCACACAA+AGG | + | chr5_3:5598493-5598512 | None:intergenic | 35.0% |
| TCCTTATCTTACTTGCAACA+GGG | + | chr5_3:5598590-5598609 | None:intergenic | 35.0% | |
| TTCCTTATCTTACTTGCAAC+AGG | + | chr5_3:5598591-5598610 | None:intergenic | 35.0% | |
| GAATTGAGAACAACATGTGT+TGG | - | chr5_3:5598713-5598732 | Msa0793720:intron | 35.0% | |
| TTCAAAGGCAACACAATGAA+GGG | + | chr5_3:5598820-5598839 | None:intergenic | 35.0% | |
| TTCATTGTGTTGCCTTTGAA+GGG | - | chr5_3:5598820-5598839 | Msa0793720:intron | 35.0% | |
| CAAGTTTCTGTTAGCAATGT+GGG | + | chr5_3:5598857-5598876 | None:intergenic | 35.0% | |
| TCAAGTTTCTGTTAGCAATG+TGG | + | chr5_3:5598858-5598877 | None:intergenic | 35.0% | |
| ACAAACTGGAAACTGTAGAT+GGG | + | chr5_3:5598983-5599002 | None:intergenic | 35.0% | |
| AACAAACTGGAAACTGTAGA+TGG | + | chr5_3:5598984-5599003 | None:intergenic | 35.0% | |
| ACAAACTGGAAACTGTAGAT+GGG | + | chr5_3:5598983-5599002 | None:intergenic | 35.0% | |
| AACAAACTGGAAACTGTAGA+TGG | + | chr5_3:5598984-5599003 | None:intergenic | 35.0% | |
| !! | CATGGACAGGTTTGTCATTT+TGG | - | chr5_3:5597111-5597130 | Msa0793720:three_prime_UTR | 40.0% |
| TCAGGAAATTGTATGCACCA+TGG | + | chr5_3:5597172-5597191 | None:intergenic | 40.0% | |
| ! | CATCAACCCCATCTAGAATT+GGG | + | chr5_3:5597584-5597603 | None:intergenic | 40.0% |
| GAAATCAACTATATGGCGTC+AGG | + | chr5_3:5597828-5597847 | None:intergenic | 40.0% | |
| AATTTCTCTCACCTGCTGTA+AGG | + | chr5_3:5597949-5597968 | None:intergenic | 40.0% | |
| TGGTAGACGATGTACAGATA+AGG | + | chr5_3:5597981-5598000 | None:intergenic | 40.0% | |
| TATCTGTACATCGTCTACCA+AGG | - | chr5_3:5597981-5598000 | Msa0793720:intron | 40.0% | |
| GTGATCTGCAGAAGAATACA+AGG | + | chr5_3:5598088-5598107 | None:intergenic | 40.0% | |
| TGCAGATCACATTCTTTCAC+TGG | - | chr5_3:5598098-5598117 | Msa0793720:intron | 40.0% | |
| GATCACATTCTTTCACTGGA+CGG | - | chr5_3:5598102-5598121 | Msa0793720:intron | 40.0% | |
| !! | TTCTCTTAAACTTGCTGGAG+AGG | + | chr5_3:5598294-5598313 | None:intergenic | 40.0% |
| AGATGGAGATGTAGAGAGTA+TGG | - | chr5_3:5598349-5598368 | Msa0793720:intron | 40.0% | |
| TATTTAACCTACGAAGGGGT+TGG | + | chr5_3:5598391-5598410 | None:intergenic | 40.0% | |
| GCTCTATTTAACCTACGAAG+GGG | + | chr5_3:5598395-5598414 | None:intergenic | 40.0% | |
| GGCTCTATTTAACCTACGAA+GGG | + | chr5_3:5598396-5598415 | None:intergenic | 40.0% | |
| ! | TGGCTCTATTTAACCTACGA+AGG | + | chr5_3:5598397-5598416 | None:intergenic | 40.0% |
| CTTACTGTGTTCTGTACCAT+AGG | - | chr5_3:5598440-5598459 | Msa0793720:intron | 40.0% | |
| ACCCTGTTGCAAGTAAGATA+AGG | - | chr5_3:5598586-5598605 | Msa0793720:intron | 40.0% | |
| TGGAAATTCTGCCTTCATTG+TGG | - | chr5_3:5598733-5598752 | Msa0793720:intron | 40.0% | |
| CAACACAATGAAGGGTTTGA+AGG | + | chr5_3:5598812-5598831 | None:intergenic | 40.0% | |
| CTTCAAAGGCAACACAATGA+AGG | + | chr5_3:5598821-5598840 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGCCTTTGA+AGG | - | chr5_3:5598819-5598838 | Msa0793720:intron | 40.0% | |
| ! | TCATTGTGTTGCCTTTGAAG+GGG | - | chr5_3:5598821-5598840 | Msa0793720:intron | 40.0% |
| CTGACTCATCCTTACAAAAC+CGG | + | chr5_3:5598902-5598921 | None:intergenic | 40.0% | |
| CAAACTGGAAACTGTAGATG+GGG | + | chr5_3:5598982-5599001 | None:intergenic | 40.0% | |
| CAAACTGGAAACTGTAGATG+GGG | + | chr5_3:5598982-5599001 | None:intergenic | 40.0% | |
| CAGCTGCATCTTTAACAAAC+TGG | + | chr5_3:5599108-5599127 | None:intergenic | 40.0% | |
| !! | CGCTGATCGCTAGTTTGTTT+AGG | + | chr5_3:5596526-5596545 | None:intergenic | 45.0% |
| GGCAAAATTGACACCTGATG+AGG | - | chr5_3:5597013-5597032 | Msa0793720:three_prime_UTR | 45.0% | |
| !! | CGACGCAATAGTTGTTTTGC+CGG | - | chr5_3:5597268-5597287 | Msa0793720:three_prime_UTR | 45.0% |
| ! | GCATCAACCCCATCTAGAAT+TGG | + | chr5_3:5597585-5597604 | None:intergenic | 45.0% |
| AAGTCGCAAGTTCGCAACAA+AGG | + | chr5_3:5597855-5597874 | None:intergenic | 45.0% | |
| TGTTCCTTTACGGCAGTAAC+TGG | - | chr5_3:5597896-5597915 | Msa0793720:intron | 45.0% | |
| GTTCCTTTACGGCAGTAACT+GGG | - | chr5_3:5597897-5597916 | Msa0793720:intron | 45.0% | |
| TGAAGAATGGAATGAGGCCT+TGG | + | chr5_3:5598001-5598020 | None:intergenic | 45.0% | |
| ACTGTGTTCTGTACCATAGG+TGG | - | chr5_3:5598443-5598462 | Msa0793720:intron | 45.0% | |
| GACTAAATCCACCCCTTCAA+AGG | + | chr5_3:5598835-5598854 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr5_3:5598893-5598912 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr5_3:5598890-5598909 | Msa0793720:intron | 45.0% |
| !! | CGGTTTTGTAAGGATGAGTC+AGG | - | chr5_3:5598900-5598919 | Msa0793720:intron | 45.0% |
| AAACTAGCGATCAGCGAAGC+AGG | - | chr5_3:5596530-5596549 | Msa0793720:three_prime_UTR | 50.0% | |
| TCTCCCAGTTACTGCCGTAA+AGG | + | chr5_3:5597903-5597922 | None:intergenic | 50.0% | |
| GGACGGCAGTACATTACAGA+AGG | - | chr5_3:5598119-5598138 | Msa0793720:intron | 50.0% | |
| AGGAAACCTTAGGACGCACT+TGG | - | chr5_3:5598606-5598625 | Msa0793720:intron | 50.0% | |
| ACTCTACCAAGTGCGTCCTA+AGG | + | chr5_3:5598615-5598634 | None:intergenic | 50.0% | |
| ATGCCGCGATTAAGCGAGTA+GGG | + | chr5_3:5598764-5598783 | None:intergenic | 50.0% | |
| AATGCCGCGATTAAGCGAGT+AGG | + | chr5_3:5598765-5598784 | None:intergenic | 50.0% | |
| GGGTTTGAAGGCTGCAATGA+AGG | + | chr5_3:5598800-5598819 | None:intergenic | 50.0% | |
| ! | TTGTGTTGCCTTTGAAGGGG+TGG | - | chr5_3:5598824-5598843 | Msa0793720:intron | 50.0% |
| !! | AACCGGCTTGTAAGGTGAGA+GGG | + | chr5_3:5598885-5598904 | None:intergenic | 50.0% |
| !! | AAACCGGCTTGTAAGGTGAG+AGG | + | chr5_3:5598886-5598905 | None:intergenic | 50.0% |
| AGGCAGGCAGGCAACGTAAT+GGG | - | chr5_3:5596554-5596573 | Msa0793720:three_prime_UTR | 55.0% | |
| !! | TTGTTTCGGGTGCTGCTGCA+TGG | - | chr5_3:5597093-5597112 | Msa0793720:three_prime_UTR | 55.0% |
| ACGGCAGTAACTGGGAGACT+TGG | - | chr5_3:5597905-5597924 | Msa0793720:intron | 55.0% | |
| !! | CTGCTGCCTTTTGTGGACTG+AGG | - | chr5_3:5598049-5598068 | Msa0793720:intron | 55.0% |
| AGAGGATCCAACCCCTTCGT+AGG | - | chr5_3:5598381-5598400 | Msa0793720:intron | 55.0% | |
| TGCCGCGATTAAGCGAGTAG+GGG | + | chr5_3:5598763-5598782 | None:intergenic | 55.0% | |
| AGCCCTCTCACCTTACAAGC+CGG | - | chr5_3:5598880-5598899 | Msa0793720:intron | 55.0% | |
| TAGCGATCAGCGAAGCAGGC+AGG | - | chr5_3:5596534-5596553 | Msa0793720:three_prime_UTR | 60.0% | |
| CAGGCAGGCAGGCAACGTAA+TGG | - | chr5_3:5596553-5596572 | Msa0793720:three_prime_UTR | 60.0% | |
| ! | GCAGGAGCTGCTGCCTTTTG+TGG | - | chr5_3:5598042-5598061 | Msa0793720:intron | 60.0% |
| GTAGGGGCGGACCACAATGA+AGG | + | chr5_3:5598747-5598766 | None:intergenic | 60.0% | |
| CGCGATTAAGCGAGTAGGGG+CGG | + | chr5_3:5598760-5598779 | None:intergenic | 60.0% | |
| CGCCCCTACTCGCTTAATCG+CGG | - | chr5_3:5598758-5598777 | Msa0793720:intron | 60.0% | |
| GATCAGCGAAGCAGGCAGGC+AGG | - | chr5_3:5596538-5596557 | Msa0793720:three_prime_UTR | 65.0% | |
| !! | TCGGGTGCTGCTGCATGGAC+AGG | - | chr5_3:5597098-5597117 | Msa0793720:three_prime_UTR | 65.0% |
| AGCGAAGCAGGCAGGCAGGC+AGG | - | chr5_3:5596542-5596561 | Msa0793720:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5596474 | 5599130 | 5596474 | ID=Msa0793720;Name=Msa0793720 |
| chr5_3 | mRNA | 5596474 | 5599130 | 5596474 | ID=Msa0793720-mRNA-1;Parent=Msa0793720;Name=Msa0793720-mRNA-1;_AED=0.23;_eAED=0.23;_QI=98|1|1|1|1|1|4|918|121 |
| chr5_3 | exon | 5596474 | 5597558 | 5596474 | ID=Msa0793720-mRNA-1:exon:2252;Parent=Msa0793720-mRNA-1 |
| chr5_3 | exon | 5597648 | 5597692 | 5597648 | ID=Msa0793720-mRNA-1:exon:2251;Parent=Msa0793720-mRNA-1 |
| chr5_3 | exon | 5598485 | 5598590 | 5598485 | ID=Msa0793720-mRNA-1:exon:2250;Parent=Msa0793720-mRNA-1 |
| chr5_3 | exon | 5598985 | 5599130 | 5598985 | ID=Msa0793720-mRNA-1:exon:2249;Parent=Msa0793720-mRNA-1 |
| chr5_3 | five_prime_UTR | 5599033 | 5599130 | 5599033 | ID=Msa0793720-mRNA-1:five_prime_utr;Parent=Msa0793720-mRNA-1 |
| chr5_3 | CDS | 5598985 | 5599032 | 5598985 | ID=Msa0793720-mRNA-1:cds;Parent=Msa0793720-mRNA-1 |
| chr5_3 | CDS | 5598485 | 5598590 | 5598485 | ID=Msa0793720-mRNA-1:cds;Parent=Msa0793720-mRNA-1 |
| chr5_3 | CDS | 5597648 | 5597692 | 5597648 | ID=Msa0793720-mRNA-1:cds;Parent=Msa0793720-mRNA-1 |
| chr5_3 | CDS | 5597392 | 5597558 | 5597392 | ID=Msa0793720-mRNA-1:cds;Parent=Msa0793720-mRNA-1 |
| chr5_3 | three_prime_UTR | 5596474 | 5597391 | 5596474 | ID=Msa0793720-mRNA-1:three_prime_utr;Parent=Msa0793720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
