Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346930 | XP_013457462.1 | 98.394 | 249 | 4 | 0 | 60 | 308 | 71 | 319 | 1.82e-174 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346930 | sp|Q94C32|MRG1_ARATH | 70.000 | 250 | 74 | 1 | 60 | 308 | 71 | 320 | 2.71e-124 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346930 | A0A072UR24 | 98.394 | 249 | 4 | 0 | 60 | 308 | 71 | 319 | 8.68e-175 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa1346930 | 0.809445 | 1.885421e-50 | -8.615850e-47 |
| Msa0027540 | Msa1346930 | 0.801224 | 9.961244e-49 | -8.615850e-47 |
| Msa0105340 | Msa1346930 | 0.803401 | 3.547361e-49 | -8.615850e-47 |
| Msa1346930 | Msa1362510 | 0.804115 | 2.521995e-49 | -8.615850e-47 |
| Msa1346930 | Msa1382720 | 0.809984 | 1.443722e-50 | -8.615850e-47 |
| Msa1346930 | Msa1404730 | 0.803607 | 3.215433e-49 | -8.615850e-47 |
| Msa1346930 | Msa1431000 | 0.812991 | 3.208673e-51 | -8.615850e-47 |
| Msa1346930 | Msa1445790 | 0.808235 | 3.421523e-50 | -8.615850e-47 |
| Msa0621890 | Msa1346930 | 0.821752 | 3.415788e-53 | -8.615850e-47 |
| Msa0626230 | Msa1346930 | 0.800423 | 1.451604e-48 | -8.615850e-47 |
| Msa0642910 | Msa1346930 | 0.800677 | 1.287996e-48 | -8.615850e-47 |
| Msa0645050 | Msa1346930 | 0.815131 | 1.081629e-51 | -8.615850e-47 |
| Msa0697140 | Msa1346930 | 0.801079 | 1.066409e-48 | -8.615850e-47 |
| Msa0810020 | Msa1346930 | 0.804988 | 1.657983e-49 | -8.615850e-47 |
| Msa0207000 | Msa1346930 | 0.804306 | 2.301852e-49 | -8.615850e-47 |
| Msa1254800 | Msa1346930 | 0.802753 | 4.830251e-49 | -8.615850e-47 |
| Msa1265960 | Msa1346930 | 0.808477 | 3.038797e-50 | -8.615850e-47 |
| Msa0371540 | Msa1346930 | 0.800110 | 1.680947e-48 | -8.615850e-47 |
| Msa0378340 | Msa1346930 | 0.819556 | 1.091408e-52 | -8.615850e-47 |
| Msa0419620 | Msa1346930 | -0.807789 | 4.257047e-50 | -8.615850e-47 |
| Msa0427690 | Msa1346930 | 0.818883 | 1.553870e-52 | -8.615850e-47 |
| Msa0430820 | Msa1346930 | 0.815560 | 8.683871e-52 | -8.615850e-47 |
| Msa1008490 | Msa1346930 | 0.815056 | 1.123850e-51 | -8.615850e-47 |
| Msa1009000 | Msa1346930 | 0.820999 | 5.096017e-53 | -8.615850e-47 |
| Msa1037700 | Msa1346930 | -0.805052 | 1.607627e-49 | -8.615850e-47 |
| Msa1098560 | Msa1346930 | 0.800778 | 1.228429e-48 | -8.615850e-47 |
| Msa0238890 | Msa1346930 | 0.806612 | 7.559448e-50 | -8.615850e-47 |
| Msa0259560 | Msa1346930 | 0.803605 | 3.218345e-49 | -8.615850e-47 |
| Msa1211090 | Msa1346930 | 0.804519 | 2.078211e-49 | -8.615850e-47 |
| Msa1220230 | Msa1346930 | 0.844525 | 7.163648e-59 | -8.615850e-47 |
| Msa0511720 | Msa1346930 | -0.811467 | 6.900620e-51 | -8.615850e-47 |
| Msa0518520 | Msa1346930 | 0.820190 | 7.819004e-53 | -8.615850e-47 |
| Msa0951710 | Msa1346930 | 0.802559 | 5.297089e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346930 | MtrunA17_Chr4g0053451 | 98.394 | 249 | 4 | 0 | 60 | 308 | 71 | 319 | 1.67e-178 | 495 |
| Msa1346930 | MtrunA17_Chr3g0134331 | 54.237 | 236 | 92 | 3 | 60 | 294 | 74 | 294 | 2.89e-77 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346930 | AT4G37280.1 | 70.000 | 250 | 74 | 1 | 60 | 308 | 71 | 320 | 2.75e-125 | 361 |
| Msa1346930 | AT1G02740.1 | 50.628 | 239 | 105 | 2 | 60 | 297 | 94 | 320 | 3.64e-71 | 223 |
Find 84 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCTGTGGTGAATTATTC+AGG | 0.235115 | tig0009285:+16039 | None:intergenic |
| GTATCTCCTTCAACCATATA+TGG | 0.242588 | tig0009285:-17273 | Msa1346930:CDS |
| GTTAGCGGAGTCAGCATCTT+TGG | 0.277153 | tig0009285:+21722 | None:intergenic |
| GTCAATATTATTATTACAAC+AGG | 0.296467 | tig0009285:+16016 | None:intergenic |
| GAACATTTATTACGCCTCTT+TGG | 0.323012 | tig0009285:-17246 | Msa1346930:intron |
| TCAACAAGTTGTTTCTTTAA+CGG | 0.339477 | tig0009285:+18293 | None:intergenic |
| CTTTCTTTGACTTGTATTCA+AGG | 0.346829 | tig0009285:+17521 | None:intergenic |
| ATGACTCGAAAGTGTACTTT+TGG | 0.353420 | tig0009285:-15868 | Msa1346930:three_prime_UTR |
| TTTCCAACAGTTGGGATGAA+TGG | 0.379480 | tig0009285:-19887 | Msa1346930:intron |
| TACAGAGAGGCTGATTCAAC+AGG | 0.389058 | tig0009285:-17399 | Msa1346930:intron |
| TAAATGTTCAGCCCCATATA+TGG | 0.403561 | tig0009285:+17260 | None:intergenic |
| AGAAACTACTTGACTTTCTC+AGG | 0.404636 | tig0009285:-16658 | Msa1346930:intron |
| CGTCATTATGTTTCATCAAA+CGG | 0.407444 | tig0009285:+19853 | None:intergenic |
| AAAGAAGACATCAAGAATAA+TGG | 0.408175 | tig0009285:-18824 | Msa1346930:intron |
| TTCCAACAGTTGGGATGAAT+GGG | 0.426268 | tig0009285:-19886 | Msa1346930:intron |
| TATCTCCTTCAACCATATAT+GGG | 0.429527 | tig0009285:-17272 | Msa1346930:CDS |
| AACTCCGGCGACGCTCCTTC+CGG | 0.431673 | tig0009285:-21702 | Msa1346930:CDS |
| GTAGACAAGAATGTTAAATC+TGG | 0.432059 | tig0009285:-19789 | Msa1346930:CDS |
| GAATCTTGAGTCTATTCATT+CGG | 0.432778 | tig0009285:-21837 | None:intergenic |
| AGAAACAACTTGTTGATGAC+TGG | 0.437780 | tig0009285:-18286 | Msa1346930:CDS |
| TTTCTCACCTGCAGAACTCT+TGG | 0.439066 | tig0009285:+19746 | None:intergenic |
| AGTTGTTTCTTTAACGGTGC+AGG | 0.445127 | tig0009285:+18299 | None:intergenic |
| ACAAAAGTCTCTGGAGGAAA+AGG | 0.446103 | tig0009285:-16146 | Msa1346930:CDS |
| GAGCAATATTAACTGAATAG+TGG | 0.448772 | tig0009285:-15927 | Msa1346930:three_prime_UTR |
| AGCAATATTAACTGAATAGT+GGG | 0.455053 | tig0009285:-15926 | Msa1346930:three_prime_UTR |
| TATGAAGGAACAAAAGTCTC+TGG | 0.457962 | tig0009285:-16155 | Msa1346930:CDS |
| GATGTCTTCTTTCTCCACTT+TGG | 0.463229 | tig0009285:+18835 | None:intergenic |
| CTGAGATCAGAAAGAATGAA+TGG | 0.465500 | tig0009285:-20703 | Msa1346930:CDS |
| GTCGCCGGAAGGAGCGTCGC+CGG | 0.477785 | tig0009285:+21698 | None:intergenic |
| TTCGCCGGCGGAGTAGACTC+TGG | 0.483228 | tig0009285:+21659 | None:intergenic |
| CTTTGTTAATCAGCAAGATA+AGG | 0.485481 | tig0009285:-18261 | Msa1346930:intron |
| TCAAACTCTGCAGCGTCAAA+AGG | 0.490736 | tig0009285:-18645 | Msa1346930:intron |
| GTCAGAATTTCATCAACAGT+TGG | 0.496057 | tig0009285:+17550 | None:intergenic |
| GCAAAGGCCAAGAGTTCTGC+AGG | 0.508311 | tig0009285:-19753 | Msa1346930:intron |
| TTCGGTCCGAAAATAATCAC+TGG | 0.512581 | tig0009285:-21819 | Msa1346930:five_prime_UTR |
| TGTGTAGTTCTTTCGAGTGG+TGG | 0.517124 | tig0009285:+15890 | None:intergenic |
| GTCATATGTGAACATTGAAG+AGG | 0.519609 | tig0009285:-16702 | Msa1346930:CDS |
| AATCTAAACATTTGATGTGT+GGG | 0.523793 | tig0009285:-15952 | Msa1346930:three_prime_UTR |
| TTCACATATGACAAAAGCTC+AGG | 0.525719 | tig0009285:+16713 | None:intergenic |
| TTCCTGTGGTGAATTATTCA+GGG | 0.532218 | tig0009285:+16040 | None:intergenic |
| AGGAGCGTCGCCGGAGTTAG+CGG | 0.533865 | tig0009285:+21707 | None:intergenic |
| AAAGATTGATTCAGGAGTTG+AGG | 0.536346 | tig0009285:-18613 | Msa1346930:intron |
| GGCGGAGTAGACTCTGGAAT+CGG | 0.536363 | tig0009285:+21665 | None:intergenic |
| GTGTAGTTCTTTCGAGTGGT+GGG | 0.537297 | tig0009285:+15891 | None:intergenic |
| TCAGCCCCATATATGGTTGA+AGG | 0.539452 | tig0009285:+17267 | None:intergenic |
| CGAGAATGTCGTGAAGCAGC+GGG | 0.550774 | tig0009285:-19832 | Msa1346930:CDS |
| GAAACAACTTGTTGATGACT+GGG | 0.555025 | tig0009285:-18285 | Msa1346930:CDS |
| GTCTCTGGAGGAAAAGGCAA+GGG | 0.562631 | tig0009285:-16140 | Msa1346930:CDS |
| ATCGGAGGAAGGAACGTCGC+CGG | 0.564978 | tig0009285:+21683 | None:intergenic |
| TGGAGGAAAAGGCAAGGGGA+AGG | 0.567530 | tig0009285:-16135 | Msa1346930:CDS |
| GCAATGTAATGAAGCAGTTG+TGG | 0.568240 | tig0009285:-17301 | Msa1346930:CDS |
| ATCTTTGGAAGAATTTCCCA+TGG | 0.569163 | tig0009285:+21737 | None:intergenic |
| TCCCCTGAATAATTCACCAC+AGG | 0.576567 | tig0009285:-16042 | Msa1346930:three_prime_UTR |
| AAAATGTAACTAGGCGGGAA+CGG | 0.582275 | tig0009285:+21773 | None:intergenic |
| TTATTACAACAGGGTTCCTG+TGG | 0.596718 | tig0009285:+16026 | None:intergenic |
| GAGGAAGGAACGTCGCCGGA+AGG | 0.604456 | tig0009285:+21687 | None:intergenic |
| ACGAGAATGTCGTGAAGCAG+CGG | 0.605410 | tig0009285:-19833 | Msa1346930:CDS |
| TACAACAGATGAGGAAGACA+AGG | 0.605689 | tig0009285:+16089 | None:intergenic |
| TAGACTCTGGAATCGGAGGA+AGG | 0.607202 | tig0009285:+21672 | None:intergenic |
| ACCTTTGCTTCGTAGATGCG+AGG | 0.607557 | tig0009285:+21615 | None:intergenic |
| TTGTAATAATAATATTGACT+AGG | 0.609059 | tig0009285:-16012 | Msa1346930:three_prime_UTR |
| TCATCAACAGTTGGTGAACG+AGG | 0.610976 | tig0009285:+17559 | None:intergenic |
| AAATCTAAACATTTGATGTG+TGG | 0.614532 | tig0009285:-15953 | Msa1346930:three_prime_UTR |
| TCCTCGCATCTACGAAGCAA+AGG | 0.620491 | tig0009285:-21616 | Msa1346930:intron |
| AGTCTCTGGAGGAAAAGGCA+AGG | 0.625018 | tig0009285:-16141 | Msa1346930:CDS |
| TCATGTGTAGTTCTTTCGAG+TGG | 0.626919 | tig0009285:+15887 | None:intergenic |
| TGGACGTTCAGCTCAAGCAA+AGG | 0.628465 | tig0009285:-19769 | Msa1346930:CDS |
| AAGTAATGAACATACCAAAG+AGG | 0.629048 | tig0009285:+17232 | None:intergenic |
| ACAGAGAGGCTGATTCAACA+GGG | 0.629692 | tig0009285:-17398 | Msa1346930:intron |
| GATGCTGACTCCGCTAACTC+CGG | 0.632176 | tig0009285:-21717 | Msa1346930:CDS |
| ATCTCCTTCAACCATATATG+GGG | 0.635833 | tig0009285:-17271 | Msa1346930:CDS |
| GCAATATTAACTGAATAGTG+GGG | 0.636445 | tig0009285:-15925 | Msa1346930:three_prime_UTR |
| TCCTGTGGTGAATTATTCAG+GGG | 0.641662 | tig0009285:+16041 | None:intergenic |
| GAAGGAACAAAAGTCTCTGG+AGG | 0.643620 | tig0009285:-16152 | Msa1346930:CDS |
| GGATTCTGTAGATGCCAAAG+TGG | 0.656047 | tig0009285:-18849 | Msa1346930:intron |
| GGAGTAGACTCTGGAATCGG+AGG | 0.656811 | tig0009285:+21668 | None:intergenic |
| CAATATTAACTGAATAGTGG+GGG | 0.657472 | tig0009285:-15924 | Msa1346930:three_prime_UTR |
| TGCGAGGACCGTGATAAGCG+AGG | 0.659063 | tig0009285:+21631 | None:intergenic |
| CATTAAGAATACAACAGATG+AGG | 0.660650 | tig0009285:+16080 | None:intergenic |
| GATTCCAGAGTCTACTCCGC+CGG | 0.662268 | tig0009285:-21663 | Msa1346930:CDS |
| TCTCTGGAGGAAAAGGCAAG+GGG | 0.682509 | tig0009285:-16139 | Msa1346930:CDS |
| AACAGTTGGGATGAATGGGT+AGG | 0.688574 | tig0009285:-19882 | Msa1346930:intron |
| TCAATATTATTATTACAACA+GGG | 0.694422 | tig0009285:+16017 | None:intergenic |
| CAGAGAGGCTGATTCAACAG+GGG | 0.730990 | tig0009285:-17397 | Msa1346930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTTTTTAATCATC+AGG | - | tig0009285:16941-16960 | Msa1346930:intron | 10.0% |
| !! | TTAAATAGAATTATTATCAT+TGG | - | tig0009285:17757-17776 | Msa1346930:intron | 10.0% |
| !! | ATGAAATATAAAATGAAAAT+AGG | + | tig0009285:19135-19154 | None:intergenic | 10.0% |
| !! | ATATTATATATTAGATTCTA+TGG | - | tig0009285:21064-21083 | Msa1346930:intron | 10.0% |
| !!! | ATCATTTTTAATGCTTTTTA+AGG | - | tig0009285:16120-16139 | Msa1346930:exon | 15.0% |
| !!! | TCATTTTTAATGCTTTTTAA+GGG | - | tig0009285:16121-16140 | Msa1346930:exon | 15.0% |
| !!! | ACTATAACATATTTTCTTTT+AGG | + | tig0009285:16666-16685 | None:intergenic | 15.0% |
| !! | GTAATTATCAATTAATAAGT+TGG | - | tig0009285:18935-18954 | Msa1346930:intron | 15.0% |
| !!! | GTTTAAATTACACTTTTTAA+AGG | - | tig0009285:19488-19507 | Msa1346930:intron | 15.0% |
| !!! | ATATACTTTTATTTTGTCTT+GGG | - | tig0009285:20516-20535 | Msa1346930:intron | 15.0% |
| !!! | ATGGACATATTTTAATTTAA+AGG | + | tig0009285:21316-21335 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAAAATCATTGC+AGG | - | tig0009285:21459-21478 | Msa1346930:intron | 15.0% |
| !! | TCAATATTATTATTACAACA+GGG | + | tig0009285:21662-21681 | None:intergenic | 15.0% |
| !!! | TTGTAATAATAATATTGACT+AGG | - | tig0009285:21664-21683 | Msa1346930:CDS | 15.0% |
| !! | AATTAGAGAATAATTAGAAG+CGG | + | tig0009285:16100-16119 | None:intergenic | 20.0% |
| !!! | TAATGTGATTTTTTTGTGTT+AGG | - | tig0009285:16234-16253 | Msa1346930:intron | 20.0% |
| !!! | AATGTGATTTTTTTGTGTTA+GGG | - | tig0009285:16235-16254 | Msa1346930:intron | 20.0% |
| !! | AAAATTTGATAAACCAAACA+AGG | + | tig0009285:16394-16413 | None:intergenic | 20.0% |
| !! | TTAGTACAAAAATTTGCATT+AGG | + | tig0009285:16853-16872 | None:intergenic | 20.0% |
| !! | TAAATTAGATCATAATCACA+GGG | + | tig0009285:16920-16939 | None:intergenic | 20.0% |
| !! | TTGAATTTGAAGGAAAAAAT+TGG | + | tig0009285:17108-17127 | None:intergenic | 20.0% |
| !! | TACTACTTCAAATAAAACAA+TGG | + | tig0009285:17432-17451 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTGAAGTAGTAA+AGG | - | tig0009285:17433-17452 | Msa1346930:intron | 20.0% |
| !! | TTACAAAAATAATGTAGGAT+TGG | + | tig0009285:18322-18341 | None:intergenic | 20.0% |
| !! | ATGACTTACAAAAATAATGT+AGG | + | tig0009285:18327-18346 | None:intergenic | 20.0% |
| !!! | AGTACATTAGTTTCAATTTT+AGG | - | tig0009285:18533-18552 | Msa1346930:intron | 20.0% |
| !!! | TGATAATTCAACATTTTCTT+TGG | - | tig0009285:18806-18825 | Msa1346930:intron | 20.0% |
| !! | CATATTAAACTTATTAGTGA+AGG | + | tig0009285:19011-19030 | None:intergenic | 20.0% |
| !!! | TACTAAATGTGATTTTAGAA+GGG | - | tig0009285:19317-19336 | Msa1346930:intron | 20.0% |
| !! | GAAATATACAATTTAACTCA+CGG | + | tig0009285:19536-19555 | None:intergenic | 20.0% |
| !! | ATTATGATATCATATTAGTG+AGG | + | tig0009285:19650-19669 | None:intergenic | 20.0% |
| !!! | TATTTTCAATGGCATTATTT+TGG | - | tig0009285:19959-19978 | Msa1346930:intron | 20.0% |
| !!! | TAGGTTATCATTTTTTAAAG+TGG | + | tig0009285:20029-20048 | None:intergenic | 20.0% |
| !! | AAAAAATGATAACCTATCTT+AGG | - | tig0009285:20033-20052 | Msa1346930:intron | 20.0% |
| !! | AAAAATGATAACCTATCTTA+GGG | - | tig0009285:20034-20053 | Msa1346930:intron | 20.0% |
| !!! | CATATACTTTTATTTTGTCT+TGG | - | tig0009285:20515-20534 | Msa1346930:intron | 20.0% |
| !!! | AATGCTTTATTGTTATTTGA+TGG | - | tig0009285:20595-20614 | Msa1346930:intron | 20.0% |
| !!! | ATGCTTTATTGTTATTTGAT+GGG | - | tig0009285:20596-20615 | Msa1346930:intron | 20.0% |
| !!! | CTCAATTTTGAATTTTTCAA+AGG | - | tig0009285:20643-20662 | Msa1346930:intron | 20.0% |
| !!! | CTCTTATCTTTAATGATTTT+TGG | - | tig0009285:20736-20755 | Msa1346930:intron | 20.0% |
| !! | GTCAATATTATTATTACAAC+AGG | + | tig0009285:21663-21682 | None:intergenic | 20.0% |
| ! | TTCAAATTCCTTAACAAACA+CGG | + | tig0009285:16181-16200 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTGTTAGGGATT+TGG | - | tig0009285:16241-16260 | Msa1346930:intron | 25.0% |
| ! | TCTTGAAGTGAAAATTTGAA+AGG | - | tig0009285:16368-16387 | Msa1346930:intron | 25.0% |
| !!! | GAATTTTTTGTGTGATTGTA+TGG | - | tig0009285:16590-16609 | Msa1346930:intron | 25.0% |
| !!! | TTACTGACTTTGAATTATGT+CGG | - | tig0009285:16708-16727 | Msa1346930:CDS | 25.0% |
| ! | GTAAATTAGATCATAATCAC+AGG | + | tig0009285:16921-16940 | None:intergenic | 25.0% |
| ! | ACATCATGATTAAACTTACA+AGG | + | tig0009285:17016-17035 | None:intergenic | 25.0% |
| ! | TTTAATCATGATGTTTCCTT+CGG | - | tig0009285:17022-17041 | Msa1346930:intron | 25.0% |
| ! | CCATTTCAAATTGAATTTGA+AGG | + | tig0009285:17118-17137 | None:intergenic | 25.0% |
| ! | CCTTCAAATTCAATTTGAAA+TGG | - | tig0009285:17115-17134 | Msa1346930:intron | 25.0% |
| !! | AAAACTTCATTTTGCAAACT+AGG | + | tig0009285:17179-17198 | None:intergenic | 25.0% |
| ! | CTTAAATTGAATTAAGTGAC+TGG | + | tig0009285:17248-17267 | None:intergenic | 25.0% |
| !!! | TGTATTCTTTTCTTTTTTGC+AGG | - | tig0009285:17375-17394 | Msa1346930:CDS | 25.0% |
| !!! | GTATTCTTTTCTTTTTTGCA+GGG | - | tig0009285:17376-17395 | Msa1346930:CDS | 25.0% |
| ! | ATGTTAAATGTCAATGAAAG+TGG | - | tig0009285:17601-17620 | Msa1346930:intron | 25.0% |
| !! | TACATTTTCAATCACATACT+AGG | + | tig0009285:18051-18070 | None:intergenic | 25.0% |
| !!! | ATTCCTATCTCTAGAATATT+TGG | - | tig0009285:18087-18106 | Msa1346930:intron | 25.0% |
| !!! | TTCCTATCTCTAGAATATTT+GGG | - | tig0009285:18088-18107 | Msa1346930:intron | 25.0% |
| !!! | ATGTCTATAAGTTTTAGATG+TGG | - | tig0009285:18166-18185 | Msa1346930:intron | 25.0% |
| !!! | AAGACATTTGTTTTCCATTT+TGG | - | tig0009285:18196-18215 | Msa1346930:intron | 25.0% |
| !!! | TTTTCCATTTTGGCTTTTTT+GGG | - | tig0009285:18206-18225 | Msa1346930:intron | 25.0% |
| !!! | TCTCTTTAGAATTTTTTACG+TGG | - | tig0009285:18274-18293 | Msa1346930:CDS | 25.0% |
| !!! | TAGAATTTTTTACGTGGAAT+TGG | - | tig0009285:18280-18299 | Msa1346930:CDS | 25.0% |
| !!! | AGAATTTTTTACGTGGAATT+GGG | - | tig0009285:18281-18300 | Msa1346930:CDS | 25.0% |
| ! | TGAGATAAACAGATCTTATT+AGG | - | tig0009285:18446-18465 | Msa1346930:intron | 25.0% |
| !!! | AACAATTTCAAAAGCACTTT+TGG | + | tig0009285:18620-18639 | None:intergenic | 25.0% |
| !! | CTTACCTTCTTTTAAATACT+TGG | - | tig0009285:18674-18693 | Msa1346930:intron | 25.0% |
| ! | ATTGCCAAGTATTTAAAAGA+AGG | + | tig0009285:18681-18700 | None:intergenic | 25.0% |
| ! | AAAGAAGACATCAAGAATAA+TGG | - | tig0009285:18852-18871 | Msa1346930:intron | 25.0% |
| ! | TTCACTAAATTTCATCTTTC+CGG | - | tig0009285:18877-18896 | Msa1346930:intron | 25.0% |
| ! | TGATAATTACTGTGCTTAAA+TGG | + | tig0009285:18925-18944 | None:intergenic | 25.0% |
| !! | AAAAAACGAAAGATTGATTC+AGG | - | tig0009285:19055-19074 | Msa1346930:intron | 25.0% |
| ! | GTAGAATGTTTGCAATTAAA+AGG | + | tig0009285:19300-19319 | None:intergenic | 25.0% |
| !! | CTACTAAATGTGATTTTAGA+AGG | - | tig0009285:19316-19335 | Msa1346930:intron | 25.0% |
| !!! | TCAACAAGTTGTTTCTTTAA+CGG | + | tig0009285:19386-19405 | None:intergenic | 25.0% |
| ! | CATATGCAAGAAATAATAAC+TGG | + | tig0009285:19469-19488 | None:intergenic | 25.0% |
| !! | AGCATTCTTTAATTTCAAGT+AGG | + | tig0009285:19558-19577 | None:intergenic | 25.0% |
| !!! | GGGAAATTTTAAAAGGAATA+AGG | - | tig0009285:20299-20318 | Msa1346930:intron | 25.0% |
| !! | GGGAAATACAATTTTGAATT+TGG | - | tig0009285:20616-20635 | Msa1346930:intron | 25.0% |
| !!! | TTGAATTTTTCAAAGGATCA+TGG | - | tig0009285:20650-20669 | Msa1346930:intron | 25.0% |
| ! | ATAAGAGCAGATTAAAATTC+TGG | + | tig0009285:20723-20742 | None:intergenic | 25.0% |
| ! | TATTATATTGTTGCAATGAC+TGG | + | tig0009285:20809-20828 | None:intergenic | 25.0% |
| ! | TTCATAAAGTTCTCACATTT+CGG | + | tig0009285:21103-21122 | None:intergenic | 25.0% |
| ! | CGTTTACTAAAAATATGTGT+AGG | - | tig0009285:21279-21298 | Msa1346930:intron | 25.0% |
| ! | AAGTGAATTACATTGGATAA+TGG | + | tig0009285:21335-21354 | None:intergenic | 25.0% |
| ! | AAATCTAAACATTTGATGTG+TGG | - | tig0009285:21723-21742 | Msa1346930:exon | 25.0% |
| ! | AATCTAAACATTTGATGTGT+GGG | - | tig0009285:21724-21743 | Msa1346930:exon | 25.0% |
| ! | AGCAATATTAACTGAATAGT+GGG | - | tig0009285:21750-21769 | Msa1346930:five_prime_UTR | 25.0% |
| ! | GAGAAACCAGTGATTATTTT+CGG | + | tig0009285:15866-15885 | None:intergenic | 30.0% |
| AGTGAGTGAAAAATGTAACT+AGG | + | tig0009285:15915-15934 | None:intergenic | 30.0% | |
| !! | AAAATTTGAAAGGCCTTGTT+TGG | - | tig0009285:16378-16397 | Msa1346930:intron | 30.0% |
| !! | TTGAATTGAGAGTGGTTTTA+AGG | - | tig0009285:16788-16807 | Msa1346930:intron | 30.0% |
| !!! | ATTCTTGTTTGGTTTTCTGT+TGG | - | tig0009285:17070-17089 | Msa1346930:intron | 30.0% |
| !!! | TTCTTGTTTGGTTTTCTGTT+GGG | - | tig0009285:17071-17090 | Msa1346930:intron | 30.0% |
| ! | TTCAATTTGAAATGGAAGCA+AGG | - | tig0009285:17123-17142 | Msa1346930:intron | 30.0% |
| ! | TCAATTTGAAATGGAAGCAA+GGG | - | tig0009285:17124-17143 | Msa1346930:intron | 30.0% |
| CAAACTAGGTTTGTGAAAAA+AGG | + | tig0009285:17165-17184 | None:intergenic | 30.0% | |
| GTGATACTTAAAGTGATTAC+AGG | - | tig0009285:17329-17348 | Msa1346930:CDS | 30.0% | |
| !! | CAGGATATAGTATTGACTTT+CGG | - | tig0009285:17348-17367 | Msa1346930:CDS | 30.0% |
| ! | TGAAGTAGTAAAGGTACAAA+TGG | - | tig0009285:17442-17461 | Msa1346930:intron | 30.0% |
| TAACTCTGCATCTTACTTAA+TGG | + | tig0009285:17550-17569 | None:intergenic | 30.0% | |
| CTAAAAAGCTAACGATACAA+AGG | + | tig0009285:17673-17692 | None:intergenic | 30.0% | |
| TTGCATCAACTACATCTAAA+AGG | - | tig0009285:17734-17753 | Msa1346930:intron | 30.0% | |
| TTGATGTATTTCCAACAGTT+GGG | - | tig0009285:17781-17800 | Msa1346930:intron | 30.0% | |
| CGTCATTATGTTTCATCAAA+CGG | + | tig0009285:17826-17845 | None:intergenic | 30.0% | |
| GTAGACAAGAATGTTAAATC+TGG | - | tig0009285:17887-17906 | Msa1346930:intron | 30.0% | |
| ATGAACTTCTATTCTTGCAA+AGG | - | tig0009285:18009-18028 | Msa1346930:intron | 30.0% | |
| TGAACTTCTATTCTTGCAAA+GGG | - | tig0009285:18010-18029 | Msa1346930:intron | 30.0% | |
| !!! | GTTTTCCATTTTGGCTTTTT+TGG | - | tig0009285:18205-18224 | Msa1346930:intron | 30.0% |
| !!! | TTTCCATTTTGGCTTTTTTG+GGG | - | tig0009285:18207-18226 | Msa1346930:intron | 30.0% |
| ! | TTTTGTAAGTCATGAGAATG+AGG | - | tig0009285:18334-18353 | Msa1346930:CDS | 30.0% |
| ! | AATGAGGTTTTCATCTCAAA+AGG | - | tig0009285:18350-18369 | Msa1346930:intron | 30.0% |
| ! | ATGAGGTTTTCATCTCAAAA+GGG | - | tig0009285:18351-18370 | Msa1346930:intron | 30.0% |
| ! | CTTTTGCCTAAAATTAATCC+TGG | - | tig0009285:18593-18612 | Msa1346930:intron | 30.0% |
| ! | TTTGGACCAGGATTAATTTT+AGG | + | tig0009285:18602-18621 | None:intergenic | 30.0% |
| TTAAATACTTGGCAATACGT+AGG | - | tig0009285:18685-18704 | Msa1346930:intron | 30.0% | |
| AACATAGCAGAATAAGGATT+TGG | + | tig0009285:18732-18751 | None:intergenic | 30.0% | |
| TTAGGAAACATAGCAGAATA+AGG | + | tig0009285:18738-18757 | None:intergenic | 30.0% | |
| ATCTTTATGTCTAGCAGTTT+AGG | + | tig0009285:18756-18775 | None:intergenic | 30.0% | |
| TGAAAACATTGCAATCAAAC+AGG | + | tig0009285:18975-18994 | None:intergenic | 30.0% | |
| ATAATATACATCAGACGTGA+AGG | - | tig0009285:19174-19193 | Msa1346930:intron | 30.0% | |
| !!! | GGAAGGTATTTGCATTTTTA+AGG | + | tig0009285:19238-19257 | None:intergenic | 30.0% |
| TACATCAAATACAGAAAGGA+AGG | + | tig0009285:19255-19274 | None:intergenic | 30.0% | |
| CAAGTACATCAAATACAGAA+AGG | + | tig0009285:19259-19278 | None:intergenic | 30.0% | |
| CTTTGTTAATCAGCAAGATA+AGG | - | tig0009285:19415-19434 | Msa1346930:intron | 30.0% | |
| AATCAGCAAGATAAGGTAAA+TGG | - | tig0009285:19422-19441 | Msa1346930:intron | 30.0% | |
| TCAGATGATTTCAAATTGCT+TGG | + | tig0009285:19609-19628 | None:intergenic | 30.0% | |
| ATGATATCATATTAGTGAGG+TGG | + | tig0009285:19647-19666 | None:intergenic | 30.0% | |
| TATCCAAAAGAGAAAAACCA+GGG | + | tig0009285:19716-19735 | None:intergenic | 30.0% | |
| ATATCCAAAAGAGAAAAACC+AGG | + | tig0009285:19717-19736 | None:intergenic | 30.0% | |
| AGAATAGTCAGATAATTGAG+AGG | + | tig0009285:19921-19940 | None:intergenic | 30.0% | |
| ! | ATCTGACTATTCTATCCTTT+TGG | - | tig0009285:19928-19947 | Msa1346930:intron | 30.0% |
| ! | TCTGACTATTCTATCCTTTT+GGG | - | tig0009285:19929-19948 | Msa1346930:intron | 30.0% |
| !! | CTTTCTTTGACTTGTATTCA+AGG | + | tig0009285:20158-20177 | None:intergenic | 30.0% |
| ! | TCAACAGGGGAAATTTTAAA+AGG | - | tig0009285:20292-20311 | Msa1346930:intron | 30.0% |
| !!! | CTTTTATACAAGAGCATCAT+AGG | + | tig0009285:20346-20365 | None:intergenic | 30.0% |
| TATCTCCTTCAACCATATAT+GGG | - | tig0009285:20404-20423 | Msa1346930:intron | 30.0% | |
| AAGTAATGAACATACCAAAG+AGG | + | tig0009285:20447-20466 | None:intergenic | 30.0% | |
| ATAATCCCCAAAAGAAACAA+GGG | + | tig0009285:20556-20575 | None:intergenic | 30.0% | |
| AATAATCCCCAAAAGAAACA+AGG | + | tig0009285:20557-20576 | None:intergenic | 30.0% | |
| TTCAAATGCTACATCCTTAA+TGG | + | tig0009285:20855-20874 | None:intergenic | 30.0% | |
| GAAAAGCAAGTGAATTACAT+TGG | + | tig0009285:21342-21361 | None:intergenic | 30.0% | |
| ATCAATGTATCAACCGTAAT+GGG | + | tig0009285:21367-21386 | None:intergenic | 30.0% | |
| AATCAATGTATCAACCGTAA+TGG | + | tig0009285:21368-21387 | None:intergenic | 30.0% | |
| TCAACTTAATACTATTGAGC+TGG | + | tig0009285:21396-21415 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTCTCAGCATATGA+AGG | - | tig0009285:21506-21525 | Msa1346930:intron | 30.0% |
| CATTAAGAATACAACAGATG+AGG | + | tig0009285:21599-21618 | None:intergenic | 30.0% | |
| GAGCAATATTAACTGAATAG+TGG | - | tig0009285:21749-21768 | Msa1346930:five_prime_UTR | 30.0% | |
| GCAATATTAACTGAATAGTG+GGG | - | tig0009285:21751-21770 | Msa1346930:five_prime_UTR | 30.0% | |
| CAATATTAACTGAATAGTGG+GGG | - | tig0009285:21752-21771 | Msa1346930:five_prime_UTR | 30.0% | |
| AGTGAAAAATGTAACTAGGC+GGG | + | tig0009285:15911-15930 | None:intergenic | 35.0% | |
| GAGTGAAAAATGTAACTAGG+CGG | + | tig0009285:15912-15931 | None:intergenic | 35.0% | |
| ! | ATCTTTGGAAGAATTTCCCA+TGG | + | tig0009285:15942-15961 | None:intergenic | 35.0% |
| ! | TGTGAATTCCGTGTTTGTTA+AGG | - | tig0009285:16170-16189 | Msa1346930:CDS | 35.0% |
| TTGTGTGATTGTATGGAATC+TGG | - | tig0009285:16597-16616 | Msa1346930:intron | 35.0% | |
| TGTGTGATTGTATGGAATCT+GGG | - | tig0009285:16598-16617 | Msa1346930:intron | 35.0% | |
| TGACTTTGAATTATGTCGGA+CGG | - | tig0009285:16712-16731 | Msa1346930:CDS | 35.0% | |
| GTAAGATGTTGAATTGAGAG+TGG | - | tig0009285:16780-16799 | Msa1346930:intron | 35.0% | |
| ! | TTTTAATCATCAGGTGCAGA+AGG | - | tig0009285:16950-16969 | Msa1346930:intron | 35.0% |
| CTGAGATCAGAAAGAATGAA+TGG | - | tig0009285:16973-16992 | Msa1346930:intron | 35.0% | |
| CATGGGTTTGAATTCTTGTT+TGG | - | tig0009285:17059-17078 | Msa1346930:intron | 35.0% | |
| ! | CAATTTGAAATGGAAGCAAG+GGG | - | tig0009285:17125-17144 | Msa1346930:intron | 35.0% |
| GTCAATGAAAGTGGTATGTA+AGG | - | tig0009285:17610-17629 | Msa1346930:intron | 35.0% | |
| ! | TGCCTGACAATTTGTTTACA+TGG | - | tig0009285:17647-17666 | Msa1346930:intron | 35.0% |
| CTTGATGTATTTCCAACAGT+TGG | - | tig0009285:17780-17799 | Msa1346930:intron | 35.0% | |
| !!! | TACACCTTGCTTTTTGTCTA+GGG | + | tig0009285:17870-17889 | None:intergenic | 35.0% |
| GAGAAATGCTCTCTTTCAAA+TGG | - | tig0009285:17947-17966 | Msa1346930:intron | 35.0% | |
| GAACTTCTATTCTTGCAAAG+GGG | - | tig0009285:18011-18030 | Msa1346930:intron | 35.0% | |
| ! | AGCCCAAATATTCTAGAGAT+AGG | + | tig0009285:18093-18112 | None:intergenic | 35.0% |
| TAAAAACCAACCATGTTCAG+AGG | + | tig0009285:18384-18403 | None:intergenic | 35.0% | |
| !!! | GAACATGGTTGGTTTTTATC+AGG | - | tig0009285:18386-18405 | Msa1346930:intron | 35.0% |
| !!! | GGTTGGTTTTTATCAGGAAA+AGG | - | tig0009285:18392-18411 | Msa1346930:intron | 35.0% |
| AACAGATCTTATTAGGTGCT+TGG | - | tig0009285:18453-18472 | Msa1346930:intron | 35.0% | |
| !!! | TAGGCTTTTAGCTATTTCTG+AGG | - | tig0009285:18552-18571 | Msa1346930:intron | 35.0% |
| !!! | AGGCTTTTAGCTATTTCTGA+GGG | - | tig0009285:18553-18572 | Msa1346930:intron | 35.0% |
| AGCATCATAACTACTGTAGA+AGG | + | tig0009285:18656-18675 | None:intergenic | 35.0% | |
| GTGTGTACAAAAAAGGAAAC+CGG | + | tig0009285:18899-18918 | None:intergenic | 35.0% | |
| ATGGAGTGTGTGTACAAAAA+AGG | + | tig0009285:18906-18925 | None:intergenic | 35.0% | |
| ATCAAACAGGAGAATTTGTG+AGG | + | tig0009285:18962-18981 | None:intergenic | 35.0% | |
| ! | AAAGATTGATTCAGGAGTTG+AGG | - | tig0009285:19063-19082 | Msa1346930:intron | 35.0% |
| GCGGATAGTATGAAGAAATT+AGG | - | tig0009285:19196-19215 | Msa1346930:intron | 35.0% | |
| !! | AGAAACAACTTGTTGATGAC+TGG | - | tig0009285:19390-19409 | Msa1346930:intron | 35.0% |
| !! | GAAACAACTTGTTGATGACT+GGG | - | tig0009285:19391-19410 | Msa1346930:intron | 35.0% |
| GATGATTTCAAATTGCTTGG+TGG | + | tig0009285:19606-19625 | None:intergenic | 35.0% | |
| ! | ATTATTGCGCTCATTTTCCT+TGG | - | tig0009285:19871-19890 | Msa1346930:CDS | 35.0% |
| GACATACTGTAATAGAACCA+AGG | + | tig0009285:19891-19910 | None:intergenic | 35.0% | |
| GAAAATATCTGTGACCCAAA+AGG | + | tig0009285:19946-19965 | None:intergenic | 35.0% | |
| ! | TGGGTCACAGATATTTTCAA+TGG | - | tig0009285:19948-19967 | Msa1346930:intron | 35.0% |
| GTCAGAATTTCATCAACAGT+TGG | + | tig0009285:20129-20148 | None:intergenic | 35.0% | |
| AGACAGCGTGTAAGAAATTA+TGG | - | tig0009285:20176-20195 | Msa1346930:intron | 35.0% | |
| ACTATCACAACTAGACGTAT+GGG | + | tig0009285:20227-20246 | None:intergenic | 35.0% | |
| ! | TCTAGTTGTGATAGTGATGA+TGG | - | tig0009285:20232-20251 | Msa1346930:intron | 35.0% |
| ! | TGTGTTTCTATGATACAGAG+AGG | - | tig0009285:20264-20283 | Msa1346930:intron | 35.0% |
| GTATCTCCTTCAACCATATA+TGG | - | tig0009285:20403-20422 | Msa1346930:intron | 35.0% | |
| ATCTCCTTCAACCATATATG+GGG | - | tig0009285:20405-20424 | Msa1346930:intron | 35.0% | |
| TAAATGTTCAGCCCCATATA+TGG | + | tig0009285:20419-20438 | None:intergenic | 35.0% | |
| GAACATTTATTACGCCTCTT+TGG | - | tig0009285:20430-20449 | Msa1346930:intron | 35.0% | |
| !! | TTTGTCACCCTTGTTTCTTT+TGG | - | tig0009285:20546-20565 | Msa1346930:intron | 35.0% |
| !! | TTGTCACCCTTGTTTCTTTT+GGG | - | tig0009285:20547-20566 | Msa1346930:intron | 35.0% |
| !! | TTTTTCAAAGGATCATGGTC+AGG | - | tig0009285:20655-20674 | Msa1346930:intron | 35.0% |
| ACACTTATGAAACTTCTGCT+AGG | + | tig0009285:20898-20917 | None:intergenic | 35.0% | |
| TTCACATATGACAAAAGCTC+AGG | + | tig0009285:20966-20985 | None:intergenic | 35.0% | |
| GTCATATGTGAACATTGAAG+AGG | - | tig0009285:20974-20993 | Msa1346930:intron | 35.0% | |
| AGAAACTACTTGACTTTCTC+AGG | - | tig0009285:21018-21037 | Msa1346930:intron | 35.0% | |
| !! | CTTTTGTCGTTATTTCAGCT+AGG | + | tig0009285:21144-21163 | None:intergenic | 35.0% |
| !! | ACTTGCTTTTCTACCCATTA+CGG | - | tig0009285:21351-21370 | Msa1346930:intron | 35.0% |
| TATGAAGGAACAAAAGTCTC+TGG | - | tig0009285:21521-21540 | Msa1346930:intron | 35.0% | |
| TTCCTGTGGTGAATTATTCA+GGG | + | tig0009285:21639-21658 | None:intergenic | 35.0% | |
| !! | ATGACTCGAAAGTGTACTTT+TGG | - | tig0009285:21808-21827 | Msa1346930:five_prime_UTR | 35.0% |
| TTCGGTCCGAAAATAATCAC+TGG | - | tig0009285:15857-15876 | Msa1346930:three_prime_UTR | 40.0% | |
| AAAATGTAACTAGGCGGGAA+CGG | + | tig0009285:15906-15925 | None:intergenic | 40.0% | |
| ! | TTTTTCACTCACTATCGCCA+TGG | - | tig0009285:15922-15941 | Msa1346930:three_prime_UTR | 40.0% |
| ! | TTTTCACTCACTATCGCCAT+GGG | - | tig0009285:15923-15942 | Msa1346930:three_prime_UTR | 40.0% |
| GAAAAAGTCCTCGCTTATCA+CGG | - | tig0009285:16037-16056 | Msa1346930:three_prime_UTR | 40.0% | |
| TGATGTGTGATTGAACGCTA+TGG | - | tig0009285:16502-16521 | Msa1346930:intron | 40.0% | |
| ATGTAGTCGACTACACTTAG+TGG | - | tig0009285:16538-16557 | Msa1346930:intron | 40.0% | |
| ! | TCGACTACACTTAGTGGATA+AGG | - | tig0009285:16544-16563 | Msa1346930:intron | 40.0% |
| ! | TACACTTAGTGGATAAGGCT+TGG | - | tig0009285:16549-16568 | Msa1346930:intron | 40.0% |
| !!! | TCTTTTAGGACCCGATCTAA+CGG | + | tig0009285:16652-16671 | None:intergenic | 40.0% |
| TGAAACAAGATCTATGCCGA+AGG | + | tig0009285:17041-17060 | None:intergenic | 40.0% | |
| ! | TCGGCATAGATCTTGTTTCA+TGG | - | tig0009285:17041-17060 | Msa1346930:intron | 40.0% |
| ! | CGGCATAGATCTTGTTTCAT+GGG | - | tig0009285:17042-17061 | Msa1346930:intron | 40.0% |
| !! | TCTTTTCTTTTTTGCAGGGC+TGG | - | tig0009285:17380-17399 | Msa1346930:CDS | 40.0% |
| TTGTGTACGCAACTCAAAGT+TGG | - | tig0009285:17513-17532 | Msa1346930:intron | 40.0% | |
| GGCCATGTAAACAAATTGTC+AGG | + | tig0009285:17652-17671 | None:intergenic | 40.0% | |
| TTTCCAACAGTTGGGATGAA+TGG | - | tig0009285:17789-17808 | Msa1346930:intron | 40.0% | |
| TTCCAACAGTTGGGATGAAT+GGG | - | tig0009285:17790-17809 | Msa1346930:intron | 40.0% | |
| !!! | CTACACCTTGCTTTTTGTCT+AGG | + | tig0009285:17871-17890 | None:intergenic | 40.0% |
| !! | TCTCTAGAATATTTGGGCTG+TGG | - | tig0009285:18094-18113 | Msa1346930:intron | 40.0% |
| CAAAGACACTCAGTAAAGAG+AGG | + | tig0009285:18134-18153 | None:intergenic | 40.0% | |
| ACTCCCCAAAAAAGCCAAAA+TGG | + | tig0009285:18213-18232 | None:intergenic | 40.0% | |
| !!! | TTTGGCTTTTTTGGGGAGTT+TGG | - | tig0009285:18214-18233 | Msa1346930:intron | 40.0% |
| TAGGATTGGACTACTGACAA+TGG | + | tig0009285:18308-18327 | None:intergenic | 40.0% | |
| !!! | TTCAAAAGCACTTTTGGACC+AGG | + | tig0009285:18614-18633 | None:intergenic | 40.0% |
| GATGTCTTCTTTCTCCACTT+TGG | + | tig0009285:18844-18863 | None:intergenic | 40.0% | |
| TCAGGAGTTGAGGTTTGATT+TGG | - | tig0009285:19073-19092 | Msa1346930:intron | 40.0% | |
| ATATACATCAGACGTGAAGG+CGG | - | tig0009285:19177-19196 | Msa1346930:intron | 40.0% | |
| !! | ATGTGATTTTAGAAGGGCAG+CGG | - | tig0009285:19323-19342 | Msa1346930:intron | 40.0% |
| !! | AGTTGTTTCTTTAACGGTGC+AGG | + | tig0009285:19380-19399 | None:intergenic | 40.0% |
| GTGGCAGGGTAAAATTGTAT+TGG | + | tig0009285:19587-19606 | None:intergenic | 40.0% | |
| ! | TTTCAAATTGCTTGGTGGCA+GGG | + | tig0009285:19601-19620 | None:intergenic | 40.0% |
| ! | ATTTCAAATTGCTTGGTGGC+AGG | + | tig0009285:19602-19621 | None:intergenic | 40.0% |
| !! | GCATTTGTGCATTTTGGTCA+AGG | + | tig0009285:19783-19802 | None:intergenic | 40.0% |
| ! | AACTGGGCATTTGTGCATTT+TGG | + | tig0009285:19789-19808 | None:intergenic | 40.0% |
| CAGTACAAGCTACAAGAACT+GGG | + | tig0009285:19805-19824 | None:intergenic | 40.0% | |
| ACAGTACAAGCTACAAGAAC+TGG | + | tig0009285:19806-19825 | None:intergenic | 40.0% | |
| ! | AGCTGATAATGCCCTAAGAT+AGG | + | tig0009285:20048-20067 | None:intergenic | 40.0% |
| ! | AGGAAGTTTTACAAGCTGCA+AGG | + | tig0009285:20100-20119 | None:intergenic | 40.0% |
| CACTATCACAACTAGACGTA+TGG | + | tig0009285:20228-20247 | None:intergenic | 40.0% | |
| GCAATGTAATGAAGCAGTTG+TGG | - | tig0009285:20375-20394 | Msa1346930:intron | 40.0% | |
| TCTAAGCATCTGCTTGAAAG+AGG | - | tig0009285:20476-20495 | Msa1346930:intron | 40.0% | |
| !! | TGTCACCCTTGTTTCTTTTG+GGG | - | tig0009285:20548-20567 | Msa1346930:intron | 40.0% |
| AAAGTTCTCACATTTCGGCA+AGG | + | tig0009285:21098-21117 | None:intergenic | 40.0% | |
| !! | ATTGCACTGACTAAATCGCA+AGG | - | tig0009285:21218-21237 | Msa1346930:intron | 40.0% |
| CTGACTAAATCGCAAGGATT+TGG | - | tig0009285:21224-21243 | Msa1346930:intron | 40.0% | |
| ! | CGCAAGGATTTGGTCTATAA+TGG | - | tig0009285:21234-21253 | Msa1346930:intron | 40.0% |
| ! | ACAAAAGTCTCTGGAGGAAA+AGG | - | tig0009285:21530-21549 | Msa1346930:intron | 40.0% |
| TACAACAGATGAGGAAGACA+AGG | + | tig0009285:21590-21609 | None:intergenic | 40.0% | |
| TCCTGTGGTGAATTATTCAG+GGG | + | tig0009285:21638-21657 | None:intergenic | 40.0% | |
| GTTCCTGTGGTGAATTATTC+AGG | + | tig0009285:21640-21659 | None:intergenic | 40.0% | |
| TTATTACAACAGGGTTCCTG+TGG | + | tig0009285:21653-21672 | None:intergenic | 40.0% | |
| TCATGTGTAGTTCTTTCGAG+TGG | + | tig0009285:21792-21811 | None:intergenic | 40.0% | |
| !!! | ATAAGCGAGGACTTTTTCGC+CGG | + | tig0009285:16035-16054 | None:intergenic | 45.0% |
| CTGGGTTCATTCACGCAATA+AGG | - | tig0009285:16616-16635 | Msa1346930:intron | 45.0% | |
| GCAATCCATGACCGTTAGAT+CGG | - | tig0009285:16638-16657 | Msa1346930:intron | 45.0% | |
| CAATCCATGACCGTTAGATC+GGG | - | tig0009285:16639-16658 | Msa1346930:intron | 45.0% | |
| CAACATCTTACGATGCGACT+GGG | + | tig0009285:16771-16790 | None:intergenic | 45.0% | |
| TCAACATCTTACGATGCGAC+TGG | + | tig0009285:16772-16791 | None:intergenic | 45.0% | |
| GTGGTATGTAAGGTCGTTGT+TGG | - | tig0009285:17620-17639 | Msa1346930:intron | 45.0% | |
| TACCCATTCATCCCAACTGT+TGG | + | tig0009285:17795-17814 | None:intergenic | 45.0% | |
| AACAGTTGGGATGAATGGGT+AGG | - | tig0009285:17794-17813 | Msa1346930:intron | 45.0% | |
| TTTCTCACCTGCAGAACTCT+TGG | + | tig0009285:17933-17952 | None:intergenic | 45.0% | |
| TGGGCTGTGGATTCAATTAC+TGG | - | tig0009285:18107-18126 | Msa1346930:intron | 45.0% | |
| !!! | CTTTTTTGGGGAGTTTGGAC+TGG | - | tig0009285:18219-18238 | Msa1346930:intron | 45.0% |
| AACTGACCTCTGAACATGGT+TGG | - | tig0009285:18375-18394 | Msa1346930:intron | 45.0% | |
| GTAGGTGCAATGCAATTGCA+CGG | - | tig0009285:18703-18722 | Msa1346930:intron | 45.0% | |
| GGATTCTGTAGATGCCAAAG+TGG | - | tig0009285:18827-18846 | Msa1346930:CDS | 45.0% | |
| TCAAACTCTGCAGCGTCAAA+AGG | - | tig0009285:19031-19050 | Msa1346930:intron | 45.0% | |
| !! | TGTGATTTTAGAAGGGCAGC+GGG | - | tig0009285:19324-19343 | Msa1346930:intron | 45.0% |
| AACTCACGGTCATCTCTATC+AGG | + | tig0009285:19522-19541 | None:intergenic | 45.0% | |
| CAAAAGAGAAAAACCAGGGC+TGG | + | tig0009285:19712-19731 | None:intergenic | 45.0% | |
| !! | CAGCCCTGGTTTTTCTCTTT+TGG | - | tig0009285:19710-19729 | Msa1346930:intron | 45.0% |
| !! | TCATCAACAGTTGGTGAACG+AGG | + | tig0009285:20120-20139 | None:intergenic | 45.0% |
| ! | TACAGAGAGGCTGATTCAAC+AGG | - | tig0009285:20277-20296 | Msa1346930:intron | 45.0% |
| ! | ACAGAGAGGCTGATTCAACA+GGG | - | tig0009285:20278-20297 | Msa1346930:intron | 45.0% |
| TCAGCCCCATATATGGTTGA+AGG | + | tig0009285:20412-20431 | None:intergenic | 45.0% | |
| AGGATCATGGTCAGGAGTTT+AGG | - | tig0009285:20663-20682 | Msa1346930:intron | 45.0% | |
| GAAGGAACAAAAGTCTCTGG+AGG | - | tig0009285:21524-21543 | Msa1346930:intron | 45.0% | |
| TCCCCTGAATAATTCACCAC+AGG | - | tig0009285:21634-21653 | Msa1346930:CDS | 45.0% | |
| ! | GTGTAGTTCTTTCGAGTGGT+GGG | + | tig0009285:21788-21807 | None:intergenic | 45.0% |
| ! | TGTGTAGTTCTTTCGAGTGG+TGG | + | tig0009285:21789-21808 | None:intergenic | 45.0% |
| GTTAGCGGAGTCAGCATCTT+TGG | + | tig0009285:15957-15976 | None:intergenic | 50.0% | |
| !! | TAGACTCTGGAATCGGAGGA+AGG | + | tig0009285:16007-16026 | None:intergenic | 50.0% |
| TCCTCGCATCTACGAAGCAA+AGG | - | tig0009285:16060-16079 | Msa1346930:three_prime_UTR | 50.0% | |
| ACCTTTGCTTCGTAGATGCG+AGG | + | tig0009285:16064-16083 | None:intergenic | 50.0% | |
| ACGAGAATGTCGTGAAGCAG+CGG | - | tig0009285:17843-17862 | Msa1346930:intron | 50.0% | |
| TGGACGTTCAGCTCAAGCAA+AGG | - | tig0009285:17907-17926 | Msa1346930:intron | 50.0% | |
| GGGTAACTGACCTCTGAACA+TGG | - | tig0009285:18371-18390 | Msa1346930:intron | 50.0% | |
| ! | CAGAGAGGCTGATTCAACAG+GGG | - | tig0009285:20279-20298 | Msa1346930:intron | 50.0% |
| ! | AGTCTCTGGAGGAAAAGGCA+AGG | - | tig0009285:21535-21554 | Msa1346930:intron | 50.0% |
| ! | GTCTCTGGAGGAAAAGGCAA+GGG | - | tig0009285:21536-21555 | Msa1346930:intron | 50.0% |
| ! | TCTCTGGAGGAAAAGGCAAG+GGG | - | tig0009285:21537-21556 | Msa1346930:intron | 50.0% |
| !! | GATGCTGACTCCGCTAACTC+CGG | - | tig0009285:15959-15978 | Msa1346930:three_prime_UTR | 55.0% |
| !! | GGAGTAGACTCTGGAATCGG+AGG | + | tig0009285:16011-16030 | None:intergenic | 55.0% |
| !! | GGCGGAGTAGACTCTGGAAT+CGG | + | tig0009285:16014-16033 | None:intergenic | 55.0% |
| GATTCCAGAGTCTACTCCGC+CGG | - | tig0009285:16013-16032 | Msa1346930:three_prime_UTR | 55.0% | |
| AGGACCCGATCTAACGGTCA+TGG | + | tig0009285:16646-16665 | None:intergenic | 55.0% | |
| CGAGAATGTCGTGAAGCAGC+GGG | - | tig0009285:17844-17863 | Msa1346930:intron | 55.0% | |
| CGGGCCCTAGACAAAAAGCA+AGG | - | tig0009285:17863-17882 | Msa1346930:intron | 55.0% | |
| GCAAAGGCCAAGAGTTCTGC+AGG | - | tig0009285:17923-17942 | Msa1346930:intron | 55.0% | |
| !! | TTTGGGGAGTTTGGACTGGC+AGG | - | tig0009285:18223-18242 | Msa1346930:intron | 55.0% |
| GATCTTACATGCACCAGCCC+TGG | - | tig0009285:19696-19715 | Msa1346930:intron | 55.0% | |
| ! | CAGCTAGGAGCATAGTGCAG+TGG | + | tig0009285:21129-21148 | None:intergenic | 55.0% |
| TGGAGGAAAAGGCAAGGGGA+AGG | - | tig0009285:21541-21560 | Msa1346930:intron | 55.0% | |
| ATCGGAGGAAGGAACGTCGC+CGG | + | tig0009285:15996-16015 | None:intergenic | 60.0% | |
| !!! | AGCGAGGACTTTTTCGCCGG+CGG | + | tig0009285:16032-16051 | None:intergenic | 60.0% |
| TGCGAGGACCGTGATAAGCG+AGG | + | tig0009285:16048-16067 | None:intergenic | 60.0% | |
| GCAGTCACGCGGTCAGAGAT+CGG | + | tig0009285:16741-16760 | None:intergenic | 60.0% | |
| !! | AGGAGCGTCGCCGGAGTTAG+CGG | + | tig0009285:15972-15991 | None:intergenic | 65.0% |
| AACTCCGGCGACGCTCCTTC+CGG | - | tig0009285:15974-15993 | Msa1346930:three_prime_UTR | 65.0% | |
| GAGGAAGGAACGTCGCCGGA+AGG | + | tig0009285:15992-16011 | None:intergenic | 65.0% | |
| TTCGCCGGCGGAGTAGACTC+TGG | + | tig0009285:16020-16039 | None:intergenic | 65.0% | |
| TCTGACCGCGTGACTGCACG+AGG | - | tig0009285:16744-16763 | Msa1346930:intron | 65.0% | |
| TGGGTCCTCGTGCAGTCACG+CGG | + | tig0009285:16752-16771 | None:intergenic | 65.0% | |
| !! | GGGGAGTTTGGACTGGCAGG+CGG | - | tig0009285:18226-18245 | Msa1346930:intron | 65.0% |
| !! | GGGAGTTTGGACTGGCAGGC+GGG | - | tig0009285:18227-18246 | Msa1346930:intron | 65.0% |
| !! | GGAGTTTGGACTGGCAGGCG+GGG | - | tig0009285:18228-18247 | Msa1346930:intron | 65.0% |
| !! | GAGTTTGGACTGGCAGGCGG+GGG | - | tig0009285:18229-18248 | Msa1346930:intron | 65.0% |
| !! | AGTTTGGACTGGCAGGCGGG+GGG | - | tig0009285:18230-18249 | Msa1346930:intron | 65.0% |
| !! | GTTTGGACTGGCAGGCGGGG+GGG | - | tig0009285:18231-18250 | Msa1346930:intron | 70.0% |
| !! | TTTGGACTGGCAGGCGGGGG+GGG | - | tig0009285:18232-18251 | Msa1346930:intron | 70.0% |
| !! | GTCGCCGGAAGGAGCGTCGC+CGG | + | tig0009285:15981-16000 | None:intergenic | 75.0% |
| !! | TTGGACTGGCAGGCGGGGGG+GGG | - | tig0009285:18233-18252 | Msa1346930:intron | 75.0% |
| ! | GACTGGCAGGCGGGGGGGGG+TGG | - | tig0009285:18236-18255 | Msa1346930:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009285 | gene | 15843 | 21855 | 15843 | ID=Msa1346930;Name=Msa1346930 |
| tig0009285 | mRNA | 15843 | 21855 | 15843 | ID=Msa1346930-mRNA-1;Parent=Msa1346930;Name=Msa1346930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=117|0.88|0.9|1|0.77|0.9|10|284|308 |
| tig0009285 | exon | 15843 | 16217 | 15843 | ID=Msa1346930-mRNA-1:exon:5732;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 16659 | 16743 | 16659 | ID=Msa1346930-mRNA-1:exon:5731;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 17247 | 17416 | 17247 | ID=Msa1346930-mRNA-1:exon:5730;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 17514 | 17593 | 17514 | ID=Msa1346930-mRNA-1:exon:5729;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 18262 | 18363 | 18262 | ID=Msa1346930-mRNA-1:exon:5728;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 18614 | 18654 | 18614 | ID=Msa1346930-mRNA-1:exon:5727;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 18825 | 18860 | 18825 | ID=Msa1346930-mRNA-1:exon:5726;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 19754 | 19899 | 19754 | ID=Msa1346930-mRNA-1:exon:5725;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 20682 | 20735 | 20682 | ID=Msa1346930-mRNA-1:exon:5724;Parent=Msa1346930-mRNA-1 |
| tig0009285 | exon | 21617 | 21855 | 21617 | ID=Msa1346930-mRNA-1:exon:5723;Parent=Msa1346930-mRNA-1 |
| tig0009285 | five_prime_UTR | 21739 | 21855 | 21739 | ID=Msa1346930-mRNA-1:five_prime_utr;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 21617 | 21738 | 21617 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 20682 | 20735 | 20682 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 19754 | 19899 | 19754 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 18825 | 18860 | 18825 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 18614 | 18654 | 18614 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 18262 | 18363 | 18262 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 17514 | 17593 | 17514 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 17247 | 17416 | 17247 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 16659 | 16743 | 16659 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | CDS | 16127 | 16217 | 16127 | ID=Msa1346930-mRNA-1:cds;Parent=Msa1346930-mRNA-1 |
| tig0009285 | three_prime_UTR | 15843 | 16126 | 15843 | ID=Msa1346930-mRNA-1:three_prime_utr;Parent=Msa1346930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
