AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645050 MtrunA17_Chr4g0032441 96.939 490 15 0 1 490 1 490 0.0 980
Msa0645050 MtrunA17_Chr2g0328781 71.546 485 136 2 3 487 19 501 0.0 730
Msa0645050 MtrunA17_Chr8g0372381 57.233 477 197 2 9 481 13 486 0.0 578
Msa0645050 MtrunA17_Chr8g0384741 50.851 470 228 1 9 478 73 539 1.59e-165 478
Msa0645050 MtrunA17_Chr3g0124811 50.000 470 232 1 9 478 22 488 5.65e-164 473
Msa0645050 MtrunA17_Chr1g0159811 49.647 425 207 2 9 433 20 437 2.89e-140 412
Msa0645050 MtrunA17_Chr3g0129271 53.125 224 100 2 175 396 34 254 5.44e-76 239
Msa0645050 MtrunA17_Chr2g0294411 28.375 437 279 12 12 424 88 514 1.77e-37 145
Msa0645050 MtrunA17_Chr3g0118081 28.444 450 302 10 13 451 90 530 3.97e-36 140
Msa0645050 MtrunA17_Chr2g0310091 29.377 337 226 9 101 431 193 523 1.10e-35 139
Msa0645050 MtrunA17_Chr4g0009161 63.107 103 37 1 174 275 118 220 9.77e-35 129
Msa0645050 MtrunA17_Chr4g0059521 28.477 453 291 13 20 451 60 500 4.35e-34 134
Msa0645050 MtrunA17_Chr3g0118121 27.679 448 308 9 13 451 60 500 1.08e-33 133
Msa0645050 MtrunA17_Chr3g0117861 28.954 411 270 14 38 438 135 533 2.96e-29 120
Msa0645050 MtrunA17_Chr4g0059221 29.091 440 283 18 13 438 111 535 6.32e-29 119
Msa0645050 MtrunA17_Chr8g0390651 29.683 347 221 13 104 438 159 494 1.15e-28 118
Msa0645050 MtrunA17_Chr8g0390631 29.379 354 223 13 99 438 145 485 8.32e-28 116
Msa0645050 MtrunA17_Chr8g0365221 29.440 411 268 15 38 438 134 532 2.96e-27 115
Msa0645050 MtrunA17_Chr6g0485301 28.775 351 229 10 99 438 153 493 1.65e-26 112
Msa0645050 MtrunA17_Chr4g0074171 29.814 322 208 11 105 420 158 467 1.33e-22 100
Msa0645050 MtrunA17_Chr6g0485311 28.529 333 215 11 104 424 156 477 3.05e-22 99.8
Msa0645050 MtrunA17_Chr1g0149961 27.273 319 220 7 105 420 158 467 3.19e-20 93.6
Msa0645050 MtrunA17_Chr2g0279751 26.891 357 230 10 102 440 147 490 1.09e-18 89.0
Msa0645050 MtrunA17_Chr4g0049641 26.039 361 228 12 102 440 174 517 1.86e-18 88.2
Msa0645050 MtrunA17_Chr2g0300801 25.496 353 242 11 102 444 152 493 4.97e-16 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645050 AT4G36250.1 54.526 475 216 0 7 481 10 484 0.0 563
Msa0645050 AT1G44170.1 50.000 480 236 2 1 479 7 483 2.71e-168 484
Msa0645050 AT1G44170.2 50.000 480 236 2 1 479 7 483 2.71e-168 484
Msa0645050 AT4G34240.1 50.636 472 230 1 12 483 82 550 1.17e-161 469
Msa0645050 AT4G34240.4 50.636 472 230 1 12 483 67 535 2.01e-161 468
Msa0645050 AT1G44170.3 52.048 415 196 1 65 479 9 420 2.95e-156 451
Msa0645050 AT4G34240.3 51.463 410 196 1 74 483 2 408 7.70e-145 421
Msa0645050 AT4G34240.2 52.244 312 146 1 12 323 82 390 6.33e-100 306
Msa0645050 AT1G74920.2 28.736 435 292 11 27 451 69 495 7.66e-38 145
Msa0645050 AT3G66658.2 27.137 468 310 10 20 462 96 557 7.84e-38 146
Msa0645050 AT3G66658.1 27.540 443 295 9 20 442 96 532 7.93e-38 146
Msa0645050 AT1G74920.1 28.736 435 292 11 27 451 74 500 1.11e-37 144
Msa0645050 AT1G79440.1 30.267 337 223 9 101 431 184 514 3.08e-37 144
Msa0645050 AT3G48170.1 27.500 440 291 12 27 451 74 500 1.66e-34 135
Msa0645050 AT1G23800.1 27.397 438 293 14 13 438 101 525 6.30e-29 120
Msa0645050 AT3G48000.1 27.088 443 296 16 9 438 101 529 4.46e-26 111
Msa0645050 AT3G24503.1 26.149 348 236 11 102 438 155 492 2.88e-23 103
Msa0645050 AT2G24270.2 28.527 319 216 7 105 420 198 507 4.09e-23 102
Msa0645050 AT2G24270.4 27.893 337 231 7 105 438 158 485 7.36e-23 102
Msa0645050 AT2G24270.3 27.893 337 231 7 105 438 158 485 7.98e-23 101
Msa0645050 AT2G24270.1 27.893 337 231 7 105 438 158 485 7.98e-23 101
Msa0645050 AT1G54100.2 24.716 352 240 10 105 444 154 492 3.29e-18 87.8
Msa0645050 AT1G54100.1 24.716 352 240 10 105 444 154 492 3.29e-18 87.8
Msa0645050 AT1G23800.2 29.242 277 175 12 13 279 101 366 8.53e-14 73.6
Msa0645050 AT2G14170.1 22.654 437 302 13 26 440 167 589 5.61e-12 68.6
Msa0645050 AT2G14170.2 22.706 436 303 13 26 440 58 480 5.66e-12 68.2

Find 131 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4_3:+49432898 Msa0645050:CDS
ACACTTTAATGCAAGATTTA+AGG 0.145432 4_3:-49430262 None:intergenic
ATGGCCCTCATGCAAGATTT+AGG 0.175581 4_3:+49427538 Msa0645050:CDS
TGGACTCACTTTCATCTTCT+TGG 0.177885 4_3:+49431250 Msa0645050:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4_3:+49432920 Msa0645050:CDS
CGGATTCTTGTGGGAAAATA+TGG 0.217738 4_3:+49431698 Msa0645050:CDS
TAAAATTTCTTATTATATAA+AGG 0.222774 4_3:-49433127 None:intergenic
CTTGGACAATAAAGCCATTA+AGG 0.225321 4_3:+49430864 Msa0645050:CDS
GCTTTGCAATGTTTGGTTCT+TGG 0.225752 4_3:-49432550 None:intergenic
GTTAAAGAATCTGTGGTTTA+TGG 0.236418 4_3:+49432009 Msa0645050:CDS
TGGGACAAAATCTTCTTTAC+AGG 0.243473 4_3:+49430934 Msa0645050:CDS
TGGAGAAAGTCACAACTAAA+AGG 0.259198 4_3:+49427475 Msa0645050:CDS
CCAAAGAGGTATCAAAATAA+TGG 0.272297 4_3:+49427381 Msa0645050:exon
AAAGAGTTGCTGTTCAAAAT+TGG 0.272793 4_3:+49431769 Msa0645050:CDS
ATGAAACTTACAGTAATAAT+TGG 0.278416 4_3:-49432225 None:intergenic
TCATTCTGCTTTGCAATGTT+TGG 0.283271 4_3:-49432557 None:intergenic
TGTTCCTCTCTACTTGCTTC+TGG 0.283578 4_3:+49430829 Msa0645050:CDS
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4_3:+49431260 Msa0645050:CDS
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4_3:-49431210 None:intergenic
GGAGTAGGTGGAAGTGGATT+TGG 0.307069 4_3:+49432746 Msa0645050:CDS
TTATATTAGAAAATATAAAA+AGG 0.325497 4_3:+49433568 Msa0645050:three_prime_UTR
TCTTATAATTATGATTATTT+GGG 0.326416 4_3:+49432899 Msa0645050:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4_3:+49427539 Msa0645050:CDS
GGACTCACTTTCATCTTCTT+GGG 0.339156 4_3:+49431251 Msa0645050:CDS
ACATAAAGGGCAAGAGGTTT+AGG 0.342962 4_3:-49432522 None:intergenic
ATTTATTGAGCCAACAATAT+TGG 0.344853 4_3:+49432146 Msa0645050:CDS
TGAGTTTGCAACTCTTATAT+AGG 0.362355 4_3:+49433040 Msa0645050:three_prime_UTR
AGAAATTGTTCATGAGCCTT+TGG 0.368196 4_3:+49430473 Msa0645050:CDS
GGTTCTTGGTGAAAACATAA+AGG 0.370058 4_3:-49432536 None:intergenic
AAATAGAGGCTTTGTACATT+AGG 0.375102 4_3:-49433171 None:intergenic
GTTCTTGGTGAAAACATAAA+GGG 0.379552 4_3:-49432535 None:intergenic
GAAATTGTTCATGAGCCTTT+GGG 0.381170 4_3:+49430474 Msa0645050:CDS
CATTAAAGTGTCTGAAAGAT+TGG 0.382376 4_3:+49430274 Msa0645050:CDS
TTCTGGCATTACCGCTTACT+TGG 0.386362 4_3:+49430846 Msa0645050:CDS
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4_3:-49430447 None:intergenic
CAGTAATAATTGGAAGTAAT+GGG 0.392841 4_3:-49432215 None:intergenic
CAAAGAGGTATCAAAATAAT+GGG 0.394252 4_3:+49427382 Msa0645050:exon
ACAGTAATAATTGGAAGTAA+TGG 0.412012 4_3:-49432216 None:intergenic
GCACCTGACCCCTGTAACAC+TGG 0.415048 4_3:+49431200 Msa0645050:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4_3:-49431927 None:intergenic
TATCAAAATAATGGGAACTT+TGG 0.423131 4_3:+49427390 Msa0645050:exon
TAATTATGATTATTTGGGAT+TGG 0.431846 4_3:+49432904 Msa0645050:CDS
TCATCTTGGAATTTACCCTT+TGG 0.435655 4_3:+49430513 Msa0645050:CDS
AACTATTCTTGCTATAGTGT+TGG 0.436694 4_3:-49431938 None:intergenic
TTGTCTTTGGAGCCACTGAT+AGG 0.437757 4_3:+49430751 Msa0645050:CDS
GAAAGTGAGTCCACAACTGC+AGG 0.443232 4_3:-49431240 None:intergenic
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4_3:+49431898 Msa0645050:CDS
GAAACTTCTTGATGATCAAA+GGG 0.446465 4_3:+49431987 Msa0645050:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4_3:-49432964 None:intergenic
ATTGATCGGTTCGAAAATAG+AGG 0.447851 4_3:-49433185 None:intergenic
TCCCACAAGAATCCGCTTCA+CGG 0.447941 4_3:-49431690 None:intergenic
AGAAACTTCTTGATGATCAA+AGG 0.450473 4_3:+49431986 Msa0645050:CDS
AAAAGAGAATGATATCTTCA+TGG 0.451423 4_3:+49427519 Msa0645050:CDS
ATTTAATACACTTGGCAAGT+TGG 0.463553 4_3:+49433518 Msa0645050:three_prime_UTR
TCGTCCTCATTATTTCATCT+TGG 0.464002 4_3:+49430499 Msa0645050:CDS
GCAGCAGATAGTCTACCATT+TGG 0.464351 4_3:+49432722 Msa0645050:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4_3:+49431207 Msa0645050:CDS
TCACTTCTTTGAGAAAATTG+AGG 0.468284 4_3:-49433235 None:intergenic
TTTGGAGGAGTAGGTGGAAG+TGG 0.473180 4_3:+49432740 Msa0645050:CDS
TGGAAAATGCCCTGCAGTTG+TGG 0.478847 4_3:+49431230 Msa0645050:CDS
TGCCTTGTTAGTTAATTAGC+GGG 0.481989 4_3:+49432972 Msa0645050:exon
TTATAAGGTGGAATTGATGA+AGG 0.484071 4_3:+49431876 Msa0645050:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4_3:-49431209 None:intergenic
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4_3:-49431928 None:intergenic
AGTCTACCATTTGGAGGAGT+AGG 0.493102 4_3:+49432731 Msa0645050:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4_3:+49432576 Msa0645050:CDS
TATTGAGCCAACAATATTGG+TGG 0.495946 4_3:+49432149 Msa0645050:CDS
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4_3:-49431203 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4_3:-49430441 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4_3:-49432863 None:intergenic
AGATTGCTCATGTTCGTTGT+GGG 0.501065 4_3:+49433298 Msa0645050:three_prime_UTR
TATTCAGGTGGATAAGATTG+AGG 0.510227 4_3:+49432473 Msa0645050:intron
GGAGAAAGTCACAACTAAAA+GGG 0.511831 4_3:+49427476 Msa0645050:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4_3:-49432176 None:intergenic
GCCGTGAAGCGGATTCTTGT+GGG 0.520458 4_3:+49431689 Msa0645050:CDS
GAGCAATCTCACAAATCAGT+TGG 0.523332 4_3:-49433284 None:intergenic
AACATTATTGCTGCATCAAG+TGG 0.523734 4_3:-49432177 None:intergenic
CTGATAGGAGCTATAGCTGC+TGG 0.523994 4_3:+49430766 Msa0645050:CDS
GGAAAATATGGAACTTGTGC+TGG 0.526806 4_3:+49431710 Msa0645050:CDS
TTGCCTTGTTAGTTAATTAG+CGG 0.527728 4_3:+49432971 Msa0645050:exon
GGCCGTGAAGCGGATTCTTG+TGG 0.532962 4_3:+49431688 Msa0645050:CDS
GTTTCCCTAAATCTTGCATG+AGG 0.549833 4_3:-49427543 None:intergenic
ATTATGATATTTAATACACT+TGG 0.549941 4_3:+49433510 Msa0645050:three_prime_UTR
AAAGCCATTAAGGTTATCCA+AGG 0.556662 4_3:+49430874 Msa0645050:CDS
AATAATGGGAACTTTGGAGA+TGG 0.556684 4_3:+49427396 Msa0645050:exon
GTGGATTTGGCATGTACCAT+GGG 0.562857 4_3:+49432759 Msa0645050:CDS
CTTCCACCTACTCCTCCAAA+TGG 0.564341 4_3:-49432737 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4_3:+49431206 Msa0645050:CDS
CCAAAATATTAATTCCAAAG+AGG 0.566584 4_3:+49427367 None:intergenic
AAATAAGTTTCAACTACTTG+AGG 0.566706 4_3:+49432874 Msa0645050:CDS
GAGATTGCTCATGTTCGTTG+TGG 0.567664 4_3:+49433297 Msa0645050:three_prime_UTR
GGCTTTATTGTCCAAGTAAG+CGG 0.568727 4_3:-49430857 None:intergenic
GTATTGAATTCATAAGCTCT+AGG 0.568775 4_3:+49432499 Msa0645050:CDS
CTACCATTTGGAGGAGTAGG+TGG 0.572073 4_3:+49432734 Msa0645050:CDS
GCAAGTAGAGAGGAACATGC+AGG 0.574415 4_3:-49430823 None:intergenic
AAAGAAAACTAATCATTGAT+CGG 0.576899 4_3:-49433199 None:intergenic
GTGAAAACATAAAGGGCAAG+AGG 0.577391 4_3:-49432528 None:intergenic
GCAGATAGTCTACCATTTGG+AGG 0.579701 4_3:+49432725 Msa0645050:CDS
AAAGAATCTGTGGTTTATGG+TGG 0.584820 4_3:+49432012 Msa0645050:CDS
TTGGTGACTGAATGTGTCAA+AGG 0.587692 4_3:-49432789 None:intergenic
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4_3:+49430290 Msa0645050:CDS
AATATCAGGTAGTGCACGAG+TGG 0.599899 4_3:+49431149 Msa0645050:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4_3:-49432175 None:intergenic
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4_3:+49427495 Msa0645050:CDS
ATTATAAGGTGGCCGTGAAG+CGG 0.604767 4_3:+49431678 Msa0645050:intron
TCAAAGGGTTAAAGAATCTG+TGG 0.611910 4_3:+49432002 Msa0645050:CDS
AATTCCAAGATGAAATAATG+AGG 0.613776 4_3:-49430503 None:intergenic
AAGCCATTAAGGTTATCCAA+GGG 0.614555 4_3:+49430875 Msa0645050:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4_3:+49431881 Msa0645050:intron
CACCCGCTAATTAACTAACA+AGG 0.618800 4_3:-49432974 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4_3:+49431210 Msa0645050:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4_3:+49431150 Msa0645050:intron
AACTTATTTGCAGTCCATGG+TGG 0.626124 4_3:-49432860 None:intergenic
AGCAATTGACTATGTCATTG+TGG 0.626758 4_3:+49431745 Msa0645050:CDS
TTTCCCTAAATCTTGCATGA+GGG 0.634134 4_3:-49427542 None:intergenic
AATAATTGGTCGGATTCCTG+TGG 0.634417 4_3:-49430901 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.636960 4_3:-49430763 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4_3:+49432758 Msa0645050:CDS
AAAGTGAGTCCACAACTGCA+GGG 0.644119 4_3:-49431239 None:intergenic
CATGCAGGAGACAACTCTGA+AGG 0.651380 4_3:-49430808 None:intergenic
ATAATGAGGACGAGACCCAA+AGG 0.652554 4_3:-49430489 None:intergenic
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4_3:-49432174 None:intergenic
AATGCCAGAAGCAAGTAGAG+AGG 0.669071 4_3:-49430833 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4_3:+49432846 Msa0645050:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4_3:+49431151 Msa0645050:intron
CGTCTCTAAAAGCTTCAAGA+CGG 0.673616 4_3:-49427567 None:intergenic
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4_3:-49431208 None:intergenic
GCCATTAAGGTTATCCAAGG+GGG 0.676497 4_3:+49430877 Msa0645050:CDS
AGCCATTAAGGTTATCCAAG+GGG 0.684321 4_3:+49430876 Msa0645050:CDS
TCTTTAATCCAAGAATAACA+AGG 0.695515 4_3:-49432928 None:intergenic
TGTCAAAGGAGAATTTCCCA+TGG 0.698053 4_3:-49432775 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGATATATAATAACA+TGG + chr4_3:49427774-49427793 Msa0645050:intron 10.0%
!! AAAAAGATATATAATAACAT+GGG + chr4_3:49427775-49427794 Msa0645050:intron 10.0%
!! CTTAAAAAAATTAATAACTT+AGG - chr4_3:49428332-49428351 None:intergenic 10.0%
!!! AAAAGTTAATCATTTTTTTA+AGG + chr4_3:49429539-49429558 Msa0645050:intron 10.0%
!! TAAAATTTAGTAATAAATGT+TGG + chr4_3:49429654-49429673 Msa0645050:intron 10.0%
!!! TGAATATTGTTTATTTTTTT+TGG - chr4_3:49429748-49429767 None:intergenic 10.0%
!!! TGTTTCATTTTATTTTTATA+AGG + chr4_3:49431861-49431880 Msa0645050:intron 10.0%
!! TATGCAAAAAATAAAATAAA+GGG - chr4_3:49432449-49432468 None:intergenic 10.0%
!! TTATGCAAAAAATAAAATAA+AGG - chr4_3:49432450-49432469 None:intergenic 10.0%
!! TCTTATAATTATGATTATTT+GGG + chr4_3:49432899-49432918 Msa0645050:CDS 10.0%
!! ATATAAAAAATCATATATCA+AGG - chr4_3:49433554-49433573 None:intergenic 10.0%
!!! AATGCATTTTTTTTTTTGTT+AGG + chr4_3:49427657-49427676 Msa0645050:intron 15.0%
!!! TTTTTTTTATAGAATGATGA+AGG - chr4_3:49427804-49427823 None:intergenic 15.0%
!! TTCAAAATTGATATCAATTA+TGG - chr4_3:49428007-49428026 None:intergenic 15.0%
!! GAAAATTTAAACATTACATA+TGG - chr4_3:49428568-49428587 None:intergenic 15.0%
!!! ATTTCTCAAATTTTATTTGT+GGG - chr4_3:49428723-49428742 None:intergenic 15.0%
!!! ACTTTTTTTTTTACAACTTT+TGG + chr4_3:49428756-49428775 Msa0645050:intron 15.0%
!!! CTTTTTTTTTTACAACTTTT+GGG + chr4_3:49428757-49428776 Msa0645050:intron 15.0%
!!! TTCTATAAAATTGTTTTGTT+TGG - chr4_3:49429246-49429265 None:intergenic 15.0%
!!! ATATCTTTTTTTTTTTTGTC+AGG - chr4_3:49429456-49429475 None:intergenic 15.0%
!! ATATATGTCCTAAAAATAAA+CGG + chr4_3:49429506-49429525 Msa0645050:intron 15.0%
!!! TGAATATTGTTTATTTTTTG+TGG - chr4_3:49429776-49429795 None:intergenic 15.0%
!! TATGATTATATTCATATATC+TGG + chr4_3:49430014-49430033 Msa0645050:intron 15.0%
!! TAGAAATTATTATGACAATT+TGG - chr4_3:49430345-49430364 None:intergenic 15.0%
!! GAAATAATTTACTTTGATAT+AGG + chr4_3:49430416-49430435 Msa0645050:intron 15.0%
!! TTAATTAAATTCAAGTATTC+AGG + chr4_3:49431800-49431819 Msa0645050:intron 15.0%
!!! TTCATTTTATTTTTATAAGG+TGG + chr4_3:49431864-49431883 Msa0645050:intron 15.0%
!!! TGTTTTTTGTTGTTATTTTT+TGG - chr4_3:49432104-49432123 None:intergenic 15.0%
!!! TTATTTTTTTGAAAATCATG+TGG - chr4_3:49432275-49432294 None:intergenic 15.0%
!!! TTTTTTGCATAATATTATTC+AGG + chr4_3:49432458-49432477 Msa0645050:intron 15.0%
!! GTTTGAACATTAATATAAAT+TGG - chr4_3:49432665-49432684 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG + chr4_3:49432898-49432917 Msa0645050:CDS 15.0%
!! ATTATGATATTTAATACACT+TGG + chr4_3:49433510-49433529 Msa0645050:three_prime_UTR 15.0%
!!! AGAATATGAGAGAATATTTT+AGG + chr4_3:49427428-49427447 Msa0645050:CDS 20.0%
!! AAAAAAAAAAATGCATTCCT+TGG - chr4_3:49427654-49427673 None:intergenic 20.0%
!! AAAGATATTCATAAAGTAAC+CGG + chr4_3:49427821-49427840 Msa0645050:intron 20.0%
!! ATAGTGTTCCATATAATATA+TGG + chr4_3:49427902-49427921 Msa0645050:intron 20.0%
!! AATTAAGACATAGACTTAAT+TGG - chr4_3:49428106-49428125 None:intergenic 20.0%
!! TAAGTCTATGTCTTAATTTA+AGG + chr4_3:49428108-49428127 Msa0645050:intron 20.0%
!! TTTACGAAATAAAGTTTATG+TGG + chr4_3:49428667-49428686 Msa0645050:intron 20.0%
!!! TTTCTCAAATTTTATTTGTG+GGG - chr4_3:49428722-49428741 None:intergenic 20.0%
!!! CATTTCTCAAATTTTATTTG+TGG - chr4_3:49428724-49428743 None:intergenic 20.0%
!! GCAAAGTTATAACTAAAAAA+TGG - chr4_3:49429015-49429034 None:intergenic 20.0%
!!! AAAAGTTGTTTTTTTTGACA+AGG + chr4_3:49429159-49429178 Msa0645050:intron 20.0%
!!! ATGGTTTAATTTATAACATG+AGG - chr4_3:49429219-49429238 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG + chr4_3:49429304-49429323 Msa0645050:intron 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG - chr4_3:49429315-49429334 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+TGG + chr4_3:49429314-49429333 Msa0645050:intron 20.0%
!!! AAAGTTGAATCATTTTTTCA+AGG + chr4_3:49429338-49429357 Msa0645050:intron 20.0%
!!! TCTAAATACCGTTTATTTTT+AGG - chr4_3:49429517-49429536 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+AGG + chr4_3:49429314-49429333 Msa0645050:intron 20.0%
!! ATTTGATAGAGTATATCTTT+AGG + chr4_3:49429795-49429814 Msa0645050:intron 20.0%
!!! ATTTTTTGTCAAGTAATCTA+GGG - chr4_3:49429880-49429899 None:intergenic 20.0%
!! TATATAATTAACTCACCAAA+GGG - chr4_3:49430531-49430550 None:intergenic 20.0%
!! AGAAACGGAAAAAATAAATT+TGG - chr4_3:49430650-49430669 None:intergenic 20.0%
!! ATAACGAAGAAAATTAGAAA+CGG - chr4_3:49430665-49430684 None:intergenic 20.0%
!!! ATTTTCTTCGTTATTTTGTT+AGG + chr4_3:49430671-49430690 Msa0645050:intron 20.0%
!!! TTTTCTTCGTTATTTTGTTA+GGG + chr4_3:49430672-49430691 Msa0645050:intron 20.0%
!! TACTAATTTAGAAACCTAAA+GGG - chr4_3:49431440-49431459 None:intergenic 20.0%
!! ATACTAATTTAGAAACCTAA+AGG - chr4_3:49431441-49431460 None:intergenic 20.0%
!! AAATATATAGTAAAACGTGA+TGG - chr4_3:49431470-49431489 None:intergenic 20.0%
!! ATTCTTTATCCAATGAATTA+AGG - chr4_3:49431608-49431627 None:intergenic 20.0%
!!! TGTTGTTATTTTTTGGTAAT+AGG - chr4_3:49432097-49432116 None:intergenic 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG + chr4_3:49432192-49432211 Msa0645050:CDS 20.0%
!! ATGAAACTTACAGTAATAAT+TGG - chr4_3:49432228-49432247 None:intergenic 20.0%
!!! TAATTATGATTATTTGGGAT+TGG + chr4_3:49432904-49432923 Msa0645050:CDS 20.0%
!!! TATATAGGTTGATATGTTTT+CGG + chr4_3:49433055-49433074 Msa0645050:three_prime_UTR 20.0%
!! AAAGAAAACTAATCATTGAT+CGG - chr4_3:49433202-49433221 None:intergenic 20.0%
!!! CAAAGAGGTATCAAAATAAT+GGG + chr4_3:49427382-49427401 Msa0645050:exon 25.0%
!! TATCAAAATAATGGGAACTT+TGG + chr4_3:49427390-49427409 Msa0645050:exon 25.0%
! AAAAGAGAATGATATCTTCA+TGG + chr4_3:49427519-49427538 Msa0645050:CDS 25.0%
!!! TGAGAATACAGTGTTATTTA+AGG + chr4_3:49427875-49427894 Msa0645050:intron 25.0%
!! GCATTGATCCATATATTATA+TGG - chr4_3:49427913-49427932 None:intergenic 25.0%
! ATATCAATTATGGTCTCATA+TGG - chr4_3:49427997-49428016 None:intergenic 25.0%
!!! TTCTCAAATTTTATTTGTGG+GGG - chr4_3:49428721-49428740 None:intergenic 25.0%
! TCTATCTATCTATCTATCTA+TGG + chr4_3:49428904-49428923 Msa0645050:intron 25.0%
! CTATCTATCTATCTATCTAT+GGG + chr4_3:49428905-49428924 Msa0645050:intron 25.0%
!!! AATTGTTTTGTTTGGTTGTA+TGG - chr4_3:49429238-49429257 None:intergenic 25.0%
!!! TTTTGTTTGGTTGTATTGTA+TGG - chr4_3:49429406-49429425 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG - chr4_3:49429419-49429438 None:intergenic 25.0%
!! TATGCTTTTACATTGTTTGT+AGG - chr4_3:49429713-49429732 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAATCTAG+GGG - chr4_3:49429879-49429898 None:intergenic 25.0%
!!! CATTTTTTGTCAAGTAATCT+AGG - chr4_3:49429881-49429900 None:intergenic 25.0%
!! TCATATATCTGGAATAATCA+TGG + chr4_3:49430025-49430044 Msa0645050:intron 25.0%
! ACACTTTAATGCAAGATTTA+AGG - chr4_3:49430265-49430284 None:intergenic 25.0%
!! ATGACAATTTGGTATTTTGT+AGG - chr4_3:49430334-49430353 None:intergenic 25.0%
! AATTCCAAGATGAAATAATG+AGG - chr4_3:49430506-49430525 None:intergenic 25.0%
! GTATATAATTAACTCACCAA+AGG - chr4_3:49430532-49430551 None:intergenic 25.0%
!! TACTTGAATGAATGTGATTT+TGG - chr4_3:49430576-49430595 None:intergenic 25.0%
! ATTCAAGTACTAGAAAAAGT+TGG + chr4_3:49430587-49430606 Msa0645050:intron 25.0%
! ATGTAACCAATAAAAAACAC+AGG + chr4_3:49430727-49430746 Msa0645050:intron 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG - chr4_3:49430914-49430933 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG + chr4_3:49430914-49430933 Msa0645050:CDS 25.0%
! CCAATTATTACAGCAAAAAT+GGG + chr4_3:49430915-49430934 Msa0645050:CDS 25.0%
!! AGTCGTGATGAAAAATATTT+TGG - chr4_3:49430969-49430988 None:intergenic 25.0%
!! TATTTTTCATCACGACTTTT+AGG + chr4_3:49430972-49430991 Msa0645050:intron 25.0%
! TTAAATTGCAGATACGATAA+CGG + chr4_3:49431008-49431027 Msa0645050:intron 25.0%
!!! CATAACCAGGTTTTAAATAA+AGG - chr4_3:49431082-49431101 None:intergenic 25.0%
! TCCTTGTAAAAACTAATATC+AGG + chr4_3:49431135-49431154 Msa0645050:intron 25.0%
!!! ACCTGATATTAGTTTTTACA+AGG - chr4_3:49431139-49431158 None:intergenic 25.0%
! TGTTATTATTATCATGGATC+GGG - chr4_3:49431325-49431344 None:intergenic 25.0%
!! GTGTTATTATTATCATGGAT+CGG - chr4_3:49431326-49431345 None:intergenic 25.0%
! AATGGCATGACATATAATAA+AGG - chr4_3:49431501-49431520 None:intergenic 25.0%
! TATCCAATGAATTAAGGTAA+TGG - chr4_3:49431602-49431621 None:intergenic 25.0%
! ATTATCAATGTAACACTTTC+TGG + chr4_3:49431653-49431672 Msa0645050:intron 25.0%
!!! ATATTAGTTTGTGAAAGGTA+GGG - chr4_3:49432073-49432092 None:intergenic 25.0%
!!! AATATTAGTTTGTGAAAGGT+AGG - chr4_3:49432074-49432093 None:intergenic 25.0%
!!! TAGGAATATTAGTTTGTGAA+AGG - chr4_3:49432078-49432097 None:intergenic 25.0%
! ATTTATTGAGCCAACAATAT+TGG + chr4_3:49432146-49432165 Msa0645050:CDS 25.0%
! CAGTAATAATTGGAAGTAAT+GGG - chr4_3:49432218-49432237 None:intergenic 25.0%
! ACAGTAATAATTGGAAGTAA+TGG - chr4_3:49432219-49432238 None:intergenic 25.0%
!! ATGACTATTTTACAAATGTC+TGG + chr4_3:49432340-49432359 Msa0645050:intron 25.0%
! AAAAGATAGATATAAGCATG+TGG - chr4_3:49432412-49432431 None:intergenic 25.0%
! TTTGCATAATATTATTCAGG+TGG + chr4_3:49432461-49432480 Msa0645050:intron 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG - chr4_3:49432811-49432830 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG + chr4_3:49432828-49432847 Msa0645050:CDS 25.0%
! AAATAAGTTTCAACTACTTG+AGG + chr4_3:49432874-49432893 Msa0645050:CDS 25.0%
! TCTTTAATCCAAGAATAACA+AGG - chr4_3:49432931-49432950 None:intergenic 25.0%
! TGAGATAAAAAACAATTGCA+AGG + chr4_3:49433255-49433274 Msa0645050:three_prime_UTR 25.0%
!!! CCATTATTTTGATACCTCTT+TGG - chr4_3:49427384-49427403 None:intergenic 30.0%
!! CCAAAGAGGTATCAAAATAA+TGG + chr4_3:49427381-49427400 Msa0645050:exon 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG + chr4_3:49427433-49427452 Msa0645050:CDS 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG + chr4_3:49427455-49427474 Msa0645050:CDS 30.0%
! TATCATTCTCTTTTTCCACT+AGG - chr4_3:49427513-49427532 None:intergenic 30.0%
! TAGACATATTTTCCAATCCA+AGG + chr4_3:49427634-49427653 Msa0645050:intron 30.0%
AAAAAATGCATTCCTTGGAT+TGG - chr4_3:49427649-49427668 None:intergenic 30.0%
TAATGTGTGTACGAATCATT+TGG - chr4_3:49427690-49427709 None:intergenic 30.0%
ATGATTCGTACACACATTAA+TGG + chr4_3:49427691-49427710 Msa0645050:intron 30.0%
ACAAAACTATCTCGTTAGTT+AGG + chr4_3:49427723-49427742 Msa0645050:intron 30.0%
GTATTCTCATCTATAGATGA+AGG - chr4_3:49427864-49427883 None:intergenic 30.0%
TATGGATCAATGCTTGAAAA+TGG + chr4_3:49427920-49427939 Msa0645050:intron 30.0%
! ACTCATGAATTGAACTTGTT+GGG + chr4_3:49428143-49428162 Msa0645050:intron 30.0%
!!! TTTGAACGATTTTGAAGCAT+TGG + chr4_3:49428180-49428199 Msa0645050:intron 30.0%
TCTAGCATTTACACAAGAAT+AGG + chr4_3:49428232-49428251 Msa0645050:intron 30.0%
TCTATTCAAGCAAAGTTATG+CGG - chr4_3:49428265-49428284 None:intergenic 30.0%
! ACTGAAAAAGTTTAAAGCCT+TGG + chr4_3:49428294-49428313 Msa0645050:intron 30.0%
AATAACTTAGGGATAAGCAA+AGG - chr4_3:49428320-49428339 None:intergenic 30.0%
AAAATGGAAATCACACCTTA+AGG - chr4_3:49428999-49429018 None:intergenic 30.0%
CTAAAAGACACCTTCATAAA+AGG + chr4_3:49429034-49429053 Msa0645050:intron 30.0%
! TTTTTGTCTGATAACAAGAG+TGG + chr4_3:49429121-49429140 Msa0645050:intron 30.0%
! TAGAGTATATCTTTAGGAGT+TGG + chr4_3:49429801-49429820 Msa0645050:intron 30.0%
! AGAGTATATCTTTAGGAGTT+GGG + chr4_3:49429802-49429821 Msa0645050:intron 30.0%
TGAATAAGTGGAGAAATATG+GGG - chr4_3:49429835-49429854 None:intergenic 30.0%
GTGAATAAGTGGAGAAATAT+GGG - chr4_3:49429836-49429855 None:intergenic 30.0%
TGTGAATAAGTGGAGAAATA+TGG - chr4_3:49429837-49429856 None:intergenic 30.0%
TACCTTTGAATGTGAATAAG+TGG - chr4_3:49429847-49429866 None:intergenic 30.0%
!! TTTGCTTTTCCGTCTTATAA+CGG - chr4_3:49430139-49430158 None:intergenic 30.0%
TACTAAATCCATTCTCAGAT+AGG + chr4_3:49430225-49430244 Msa0645050:intron 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG + chr4_3:49430274-49430293 Msa0645050:CDS 30.0%
CAACGACAAAAATTTAGAGA+TGG + chr4_3:49430612-49430631 Msa0645050:intron 30.0%
!!! GACAATCCTGTGTTTTTTAT+TGG - chr4_3:49430736-49430755 None:intergenic 30.0%
AAAAAACACAGGATTGTCTT+TGG + chr4_3:49430738-49430757 Msa0645050:intron 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG - chr4_3:49430918-49430937 None:intergenic 30.0%
ACGGTTTCATAAGATTACAA+TGG - chr4_3:49431519-49431538 None:intergenic 30.0%
AATAACACAACAAAAGTGAC+GGG - chr4_3:49431543-49431562 None:intergenic 30.0%
GAATAACACAACAAAAGTGA+CGG - chr4_3:49431544-49431563 None:intergenic 30.0%
CATCCATTACCTTAATTCAT+TGG + chr4_3:49431596-49431615 Msa0645050:intron 30.0%
! AACACTTTCTGGTGATTATA+AGG + chr4_3:49431664-49431683 Msa0645050:intron 30.0%
! AAAGAGTTGCTGTTCAAAAT+TGG + chr4_3:49431769-49431788 Msa0645050:CDS 30.0%
TTATAAGGTGGAATTGATGA+AGG + chr4_3:49431876-49431895 Msa0645050:intron 30.0%
! AACTATTCTTGCTATAGTGT+TGG - chr4_3:49431941-49431960 None:intergenic 30.0%
! AGAAACTTCTTGATGATCAA+AGG + chr4_3:49431986-49432005 Msa0645050:CDS 30.0%
! GAAACTTCTTGATGATCAAA+GGG + chr4_3:49431987-49432006 Msa0645050:CDS 30.0%
GTTAAAGAATCTGTGGTTTA+TGG + chr4_3:49432009-49432028 Msa0645050:CDS 30.0%
AGTCATTAGTGTCATCATAA+TGG - chr4_3:49432326-49432345 None:intergenic 30.0%
GTATTGAATTCATAAGCTCT+AGG + chr4_3:49432499-49432518 Msa0645050:CDS 30.0%
GTTCTTGGTGAAAACATAAA+GGG - chr4_3:49432538-49432557 None:intergenic 30.0%
! ATGATATCTGAAACATCATC+TGG + chr4_3:49432576-49432595 Msa0645050:CDS 30.0%
! TTGCCTTGTTAGTTAATTAG+CGG + chr4_3:49432971-49432990 Msa0645050:exon 30.0%
TGAGTTTGCAACTCTTATAT+AGG + chr4_3:49433040-49433059 Msa0645050:three_prime_UTR 30.0%
! AAATAGAGGCTTTGTACATT+AGG - chr4_3:49433174-49433193 None:intergenic 30.0%
! TCACTTCTTTGAGAAAATTG+AGG - chr4_3:49433238-49433257 None:intergenic 30.0%
ATTTAATACACTTGGCAAGT+TGG + chr4_3:49433518-49433537 Msa0645050:three_prime_UTR 30.0%
! AATAATGGGAACTTTGGAGA+TGG + chr4_3:49427396-49427415 Msa0645050:exon 35.0%
TGGAGAAAGTCACAACTAAA+AGG + chr4_3:49427475-49427494 Msa0645050:CDS 35.0%
GGAGAAAGTCACAACTAAAA+GGG + chr4_3:49427476-49427495 Msa0645050:CDS 35.0%
TTTCCCTAAATCTTGCATGA+GGG - chr4_3:49427545-49427564 None:intergenic 35.0%
! AATGAGCTTTTACTTGAACG+TGG - chr4_3:49427967-49427986 None:intergenic 35.0%
GACTCATGAATTGAACTTGT+TGG + chr4_3:49428142-49428161 Msa0645050:intron 35.0%
CTAGATGAAAAAGTCTCATG+TGG - chr4_3:49428217-49428236 None:intergenic 35.0%
CATTTACACAAGAATAGGCT+AGG + chr4_3:49428237-49428256 Msa0645050:intron 35.0%
CTATTCAAGCAAAGTTATGC+GGG - chr4_3:49428264-49428283 None:intergenic 35.0%
TTGCTAAAAGACACCTTCAT+GGG - chr4_3:49429031-49429050 None:intergenic 35.0%
ATTGCTAAAAGACACCTTCA+TGG - chr4_3:49428971-49428990 None:intergenic 35.0%
! TTTTAGCAATCCACACCTTA+AGG + chr4_3:49428981-49429000 Msa0645050:intron 35.0%
! CTAGAAGACACCTTTTATGA+AGG - chr4_3:49429047-49429066 None:intergenic 35.0%
! GAGTATATCTTTAGGAGTTG+GGG + chr4_3:49429803-49429822 Msa0645050:intron 35.0%
CTCCACTTATTCACATTCAA+AGG + chr4_3:49429842-49429861 Msa0645050:intron 35.0%
GAACAAACACCGTTATAAGA+CGG + chr4_3:49430127-49430146 Msa0645050:intron 35.0%
! GTAACTTTTGTTCGTTGTTG+TGG - chr4_3:49430173-49430192 None:intergenic 35.0%
AGAAATTGTTCATGAGCCTT+TGG + chr4_3:49430473-49430492 Msa0645050:CDS 35.0%
GAAATTGTTCATGAGCCTTT+GGG + chr4_3:49430474-49430493 Msa0645050:CDS 35.0%
TCGTCCTCATTATTTCATCT+TGG + chr4_3:49430499-49430518 Msa0645050:CDS 35.0%
TCATCTTGGAATTTACCCTT+TGG + chr4_3:49430513-49430532 Msa0645050:CDS 35.0%
TGTTAGGGTCTTGATAAGTT+TGG + chr4_3:49430687-49430706 Msa0645050:intron 35.0%
GTTAGGGTCTTGATAAGTTT+GGG + chr4_3:49430688-49430707 Msa0645050:intron 35.0%
CTTGGACAATAAAGCCATTA+AGG + chr4_3:49430864-49430883 Msa0645050:CDS 35.0%
AAAGCCATTAAGGTTATCCA+AGG + chr4_3:49430874-49430893 Msa0645050:CDS 35.0%
AAGCCATTAAGGTTATCCAA+GGG + chr4_3:49430875-49430894 Msa0645050:CDS 35.0%
TGGGACAAAATCTTCTTTAC+AGG + chr4_3:49430934-49430953 Msa0645050:CDS 35.0%
!!! ACGACTTTTAGGTTTTGAAC+AGG + chr4_3:49430983-49431002 Msa0645050:intron 35.0%
TTCATCTTCTTGGGATTTAG+AGG + chr4_3:49431260-49431279 Msa0645050:CDS 35.0%
! CGAGCGTGTTATTATTATCA+TGG - chr4_3:49431331-49431350 None:intergenic 35.0%
! ACTTTCTGGTGATTATAAGG+TGG + chr4_3:49431667-49431686 Msa0645050:intron 35.0%
AGCAATTGACTATGTCATTG+TGG + chr4_3:49431745-49431764 Msa0645050:CDS 35.0%
GTGTGGATCAAGAAAATGTT+TGG + chr4_3:49431898-49431917 Msa0645050:CDS 35.0%
! CTATAGTGTTGGAATGTTGT+GGG - chr4_3:49431930-49431949 None:intergenic 35.0%
TCAAAGGGTTAAAGAATCTG+TGG + chr4_3:49432002-49432021 Msa0645050:CDS 35.0%
AAAGAATCTGTGGTTTATGG+TGG + chr4_3:49432012-49432031 Msa0645050:CDS 35.0%
TATTGAGCCAACAATATTGG+TGG + chr4_3:49432149-49432168 Msa0645050:CDS 35.0%
ACATTATTGCTGCATCAAGT+GGG - chr4_3:49432179-49432198 None:intergenic 35.0%
AACATTATTGCTGCATCAAG+TGG - chr4_3:49432180-49432199 None:intergenic 35.0%
TATTCAGGTGGATAAGATTG+AGG + chr4_3:49432473-49432492 Msa0645050:intron 35.0%
GGTTCTTGGTGAAAACATAA+AGG - chr4_3:49432539-49432558 None:intergenic 35.0%
TCATTCTGCTTTGCAATGTT+TGG - chr4_3:49432560-49432579 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG + chr4_3:49432846-49432865 Msa0645050:CDS 35.0%
TGAAACTTATTTGCAGTCCA+TGG - chr4_3:49432866-49432885 None:intergenic 35.0%
TTAACTAACAAGGCAAGATC+TGG - chr4_3:49432967-49432986 None:intergenic 35.0%
! TGCCTTGTTAGTTAATTAGC+GGG + chr4_3:49432972-49432991 Msa0645050:exon 35.0%
!! ATTGATCGGTTCGAAAATAG+AGG - chr4_3:49433188-49433207 None:intergenic 35.0%
GTTTCCCTAAATCTTGCATG+AGG - chr4_3:49427546-49427565 None:intergenic 40.0%
! CGTCTCTAAAAGCTTCAAGA+CGG - chr4_3:49427570-49427589 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG + chr4_3:49427570-49427589 Msa0645050:CDS 40.0%
GGTGCACAACTTCTTATTAC+CGG - chr4_3:49427843-49427862 None:intergenic 40.0%
CTCAGTCATTTAGTGTGTGT+GGG - chr4_3:49428471-49428490 None:intergenic 40.0%
TCTCAGTCATTTAGTGTGTG+TGG - chr4_3:49428472-49428491 None:intergenic 40.0%
CACTAAATGACTGAGAAGTG+TGG + chr4_3:49428476-49428495 Msa0645050:intron 40.0%
ATGCAACAAATCTTGAAGCG+TGG - chr4_3:49428511-49428530 None:intergenic 40.0%
!! AATTTTATTTGTGGGGGACG+AGG - chr4_3:49428715-49428734 None:intergenic 40.0%
TGTTTGTAGGATCGCTTCAA+TGG - chr4_3:49429700-49429719 None:intergenic 40.0%
! TTTTGTTCGTTGTTGTGGAG+CGG - chr4_3:49430168-49430187 None:intergenic 40.0%
CTAACGTTCCTATCTGAGAA+TGG - chr4_3:49430236-49430255 None:intergenic 40.0%
AGATTGGATGTCAAGCAAGA+AGG + chr4_3:49430290-49430309 Msa0645050:CDS 40.0%
CTTGAAAGCAATGCTATTGC+AGG - chr4_3:49430450-49430469 None:intergenic 40.0%
!! GGCTTTATTGTCCAAGTAAG+CGG - chr4_3:49430860-49430879 None:intergenic 40.0%
AGCCATTAAGGTTATCCAAG+GGG + chr4_3:49430876-49430895 Msa0645050:CDS 40.0%
AATAATTGGTCGGATTCCTG+TGG - chr4_3:49430904-49430923 None:intergenic 40.0%
!! GTGACATTCACGTTTTAACG+TGG + chr4_3:49431030-49431049 Msa0645050:intron 40.0%
TCAATCGCAAATTATGGTCG+CGG + chr4_3:49431055-49431074 Msa0645050:intron 40.0%
! GCGGACCTTTATTTAAAACC+TGG + chr4_3:49431074-49431093 Msa0645050:intron 40.0%
TGGACTCACTTTCATCTTCT+TGG + chr4_3:49431250-49431269 Msa0645050:CDS 40.0%
GGACTCACTTTCATCTTCTT+GGG + chr4_3:49431251-49431270 Msa0645050:CDS 40.0%
CGGATTCTTGTGGGAAAATA+TGG + chr4_3:49431698-49431717 Msa0645050:CDS 40.0%
GGAAAATATGGAACTTGTGC+TGG + chr4_3:49431710-49431729 Msa0645050:CDS 40.0%
! GCTATAGTGTTGGAATGTTG+TGG - chr4_3:49431931-49431950 None:intergenic 40.0%
ATTATTGCTGCATCAAGTGG+GGG - chr4_3:49432177-49432196 None:intergenic 40.0%
CATTATTGCTGCATCAAGTG+GGG - chr4_3:49432178-49432197 None:intergenic 40.0%
AAATCATGTGGCAAGTCTAG+AGG - chr4_3:49432263-49432282 None:intergenic 40.0%
ACATAAAGGGCAAGAGGTTT+AGG - chr4_3:49432525-49432544 None:intergenic 40.0%
GTGAAAACATAAAGGGCAAG+AGG - chr4_3:49432531-49432550 None:intergenic 40.0%
!! GCTTTGCAATGTTTGGTTCT+TGG - chr4_3:49432553-49432572 None:intergenic 40.0%
TGTCAAAGGAGAATTTCCCA+TGG - chr4_3:49432778-49432797 None:intergenic 40.0%
! TTGGTGACTGAATGTGTCAA+AGG - chr4_3:49432792-49432811 None:intergenic 40.0%
AACTTATTTGCAGTCCATGG+TGG - chr4_3:49432863-49432882 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG + chr4_3:49432920-49432939 Msa0645050:CDS 40.0%
CACCCGCTAATTAACTAACA+AGG - chr4_3:49432977-49432996 None:intergenic 40.0%
GAGCAATCTCACAAATCAGT+TGG - chr4_3:49433287-49433306 None:intergenic 40.0%
AGATTGCTCATGTTCGTTGT+GGG + chr4_3:49433298-49433317 Msa0645050:three_prime_UTR 40.0%
ATGGCCCTCATGCAAGATTT+AGG + chr4_3:49427538-49427557 Msa0645050:CDS 45.0%
TGGCCCTCATGCAAGATTTA+GGG + chr4_3:49427539-49427558 Msa0645050:CDS 45.0%
TTAGGGATAAGCAAAGGCCA+AGG - chr4_3:49428314-49428333 None:intergenic 45.0%
GGTGGATAGTGTGATATTGG+TGG - chr4_3:49428694-49428713 None:intergenic 45.0%
CGAGGTGGATAGTGTGATAT+TGG - chr4_3:49428697-49428716 None:intergenic 45.0%
CTAAAAGACACCTTCATGGG+TGG - chr4_3:49428967-49428986 None:intergenic 45.0%
GGAAATCACACCTTAAGGTG+TGG - chr4_3:49428994-49429013 None:intergenic 45.0%
TGTCGTCAACGTTGCAAATC+TGG - chr4_3:49430053-49430072 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG - chr4_3:49430444-49430463 None:intergenic 45.0%
ATAATGAGGACGAGACCCAA+AGG - chr4_3:49430492-49430511 None:intergenic 45.0%
!! TTGTCTTTGGAGCCACTGAT+AGG + chr4_3:49430751-49430770 Msa0645050:CDS 45.0%
TGTTCCTCTCTACTTGCTTC+TGG + chr4_3:49430829-49430848 Msa0645050:CDS 45.0%
AATGCCAGAAGCAAGTAGAG+AGG - chr4_3:49430836-49430855 None:intergenic 45.0%
TTCTGGCATTACCGCTTACT+TGG + chr4_3:49430846-49430865 Msa0645050:CDS 45.0%
GCCATTAAGGTTATCCAAGG+GGG + chr4_3:49430877-49430896 Msa0645050:CDS 45.0%
TCCCCCTTGGATAACCTTAA+TGG - chr4_3:49430881-49430900 None:intergenic 45.0%
GTGGCCTCAATCGCAAATTA+TGG + chr4_3:49431049-49431068 Msa0645050:intron 45.0%
! GCGACCATAATTTGCGATTG+AGG - chr4_3:49431056-49431075 None:intergenic 45.0%
GTGACAAGAGACTCATAACC+AGG - chr4_3:49431095-49431114 None:intergenic 45.0%
AATATCAGGTAGTGCACGAG+TGG + chr4_3:49431149-49431168 Msa0645050:intron 45.0%
ATATCAGGTAGTGCACGAGT+GGG + chr4_3:49431150-49431169 Msa0645050:intron 45.0%
AAAGTGAGTCCACAACTGCA+GGG - chr4_3:49431242-49431261 None:intergenic 45.0%
AATAATAACACGCTCGAGCG+TGG + chr4_3:49431335-49431354 Msa0645050:intron 45.0%
!! CACAACAAAAGTGACGGGTA+CGG - chr4_3:49431538-49431557 None:intergenic 45.0%
ATTATAAGGTGGCCGTGAAG+CGG + chr4_3:49431678-49431697 Msa0645050:intron 45.0%
AGGTGGAATTGATGAAGGTG+TGG + chr4_3:49431881-49431900 Msa0645050:intron 45.0%
GCAGCAGATAGTCTACCATT+TGG + chr4_3:49432722-49432741 Msa0645050:CDS 45.0%
GCAGATAGTCTACCATTTGG+AGG + chr4_3:49432725-49432744 Msa0645050:CDS 45.0%
AGTCTACCATTTGGAGGAGT+AGG + chr4_3:49432731-49432750 Msa0645050:CDS 45.0%
! AGTGGATTTGGCATGTACCA+TGG + chr4_3:49432758-49432777 Msa0645050:CDS 45.0%
GTGGATTTGGCATGTACCAT+GGG + chr4_3:49432759-49432778 Msa0645050:CDS 45.0%
GAGATTGCTCATGTTCGTTG+TGG + chr4_3:49433297-49433316 Msa0645050:three_prime_UTR 45.0%
!!! ATTATATATCTTTTTTTTTT+TGG - chr4_3:49427770-49427789 None:intergenic 5.0%
!! TTAAAAAAATTAATAACTTA+GGG - chr4_3:49428331-49428350 None:intergenic 5.0%
!!! TTTTTTAAGTTTTTTATTTT+TGG + chr4_3:49428343-49428362 Msa0645050:intron 5.0%
!!! AATTTTTATTTAATATTACT+CGG - chr4_3:49428629-49428648 None:intergenic 5.0%
!! TAAAATTTCTTATTATATAA+AGG - chr4_3:49433130-49433149 None:intergenic 5.0%
!! TTATATTAGAAAATATAAAA+AGG + chr4_3:49433568-49433587 Msa0645050:three_prime_UTR 5.0%
TTTATTTGTGGGGGACGAGG+TGG - chr4_3:49428712-49428731 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr4_3:49428788-49428807 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_3:49428787-49428806 None:intergenic 50.0%
TTGCTAGAAGCCACCCATGA+AGG + chr4_3:49428954-49428973 Msa0645050:intron 50.0%
GCAGCTATAGCTCCTATCAG+TGG - chr4_3:49430766-49430785 None:intergenic 50.0%
CTGATAGGAGCTATAGCTGC+TGG + chr4_3:49430766-49430785 Msa0645050:CDS 50.0%
CATGCAGGAGACAACTCTGA+AGG - chr4_3:49430811-49430830 None:intergenic 50.0%
GCAAGTAGAGAGGAACATGC+AGG - chr4_3:49430826-49430845 None:intergenic 50.0%
TATCAGGTAGTGCACGAGTG+GGG + chr4_3:49431151-49431170 Msa0645050:intron 50.0%
ACCCCTGTAACACTGGAGTT+GGG + chr4_3:49431207-49431226 Msa0645050:CDS 50.0%
ACCCAACTCCAGTGTTACAG+GGG - chr4_3:49431211-49431230 None:intergenic 50.0%
CACCCAACTCCAGTGTTACA+GGG - chr4_3:49431212-49431231 None:intergenic 50.0%
TGGAAAATGCCCTGCAGTTG+TGG + chr4_3:49431230-49431249 Msa0645050:CDS 50.0%
GAAAGTGAGTCCACAACTGC+AGG - chr4_3:49431243-49431262 None:intergenic 50.0%
GCTCTGATGTTGAGCCCTTT+AGG + chr4_3:49431423-49431442 Msa0645050:intron 50.0%
TCCCACAAGAATCCGCTTCA+CGG - chr4_3:49431693-49431712 None:intergenic 50.0%
GGGGGATCCACCAATATTGT+TGG - chr4_3:49432159-49432178 None:intergenic 50.0%
CTACCATTTGGAGGAGTAGG+TGG + chr4_3:49432734-49432753 Msa0645050:CDS 50.0%
CTTCCACCTACTCCTCCAAA+TGG - chr4_3:49432740-49432759 None:intergenic 50.0%
TTTGGAGGAGTAGGTGGAAG+TGG + chr4_3:49432740-49432759 Msa0645050:CDS 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG + chr4_3:49432746-49432765 Msa0645050:CDS 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG - chr4_3:49432956-49432975 None:intergenic 50.0%
AGGGTTGCGTCGTTTCCTAG+TGG + chr4_3:49427495-49427514 Msa0645050:CDS 55.0%
ACTCCAGTGTTACAGGGGTC+AGG - chr4_3:49431206-49431225 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG + chr4_3:49431206-49431225 Msa0645050:CDS 55.0%
CCACCCAACTCCAGTGTTAC+AGG - chr4_3:49431213-49431232 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG + chr4_3:49431210-49431229 Msa0645050:CDS 55.0%
! GCCGTGAAGCGGATTCTTGT+GGG + chr4_3:49431689-49431708 Msa0645050:CDS 55.0%
GGTTATCCAAGGGGGACCAC+AGG + chr4_3:49430885-49430904 Msa0645050:CDS 60.0%
GCACCTGACCCCTGTAACAC+TGG + chr4_3:49431200-49431219 Msa0645050:CDS 60.0%
! GGCCGTGAAGCGGATTCTTG+TGG + chr4_3:49431688-49431707 Msa0645050:CDS 60.0%
CGGATTCCTGTGGTCCCCCT+TGG - chr4_3:49430894-49430913 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 49427376 49433591 49427376 ID=Msa0645050;Name=Msa0645050
chr4_3 mRNA 49427376 49433591 49427376 ID=Msa0645050-mRNA-1;Parent=Msa0645050;Name=Msa0645050-mRNA-1;_AED=0.13;_eAED=0.13;_QI=24|1|1|1|1|1|10|609|490
chr4_3 exon 49427376 49427591 49427376 ID=Msa0645050-mRNA-1:exon:11786;Parent=Msa0645050-mRNA-1
chr4_3 exon 49430243 49430311 49430243 ID=Msa0645050-mRNA-1:exon:11787;Parent=Msa0645050-mRNA-1
chr4_3 exon 49430438 49430534 49430438 ID=Msa0645050-mRNA-1:exon:11788;Parent=Msa0645050-mRNA-1
chr4_3 exon 49430749 49430955 49430749 ID=Msa0645050-mRNA-1:exon:11789;Parent=Msa0645050-mRNA-1
chr4_3 exon 49431157 49431281 49431157 ID=Msa0645050-mRNA-1:exon:11790;Parent=Msa0645050-mRNA-1
chr4_3 exon 49431686 49431790 49431686 ID=Msa0645050-mRNA-1:exon:11791;Parent=Msa0645050-mRNA-1
chr4_3 exon 49431883 49432055 49431883 ID=Msa0645050-mRNA-1:exon:11792;Parent=Msa0645050-mRNA-1
chr4_3 exon 49432146 49432236 49432146 ID=Msa0645050-mRNA-1:exon:11793;Parent=Msa0645050-mRNA-1
chr4_3 exon 49432480 49432629 49432480 ID=Msa0645050-mRNA-1:exon:11794;Parent=Msa0645050-mRNA-1
chr4_3 exon 49432719 49433591 49432719 ID=Msa0645050-mRNA-1:exon:11795;Parent=Msa0645050-mRNA-1
chr4_3 five_prime_UTR 49427376 49427399 49427376 ID=Msa0645050-mRNA-1:five_prime_utr;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49427400 49427591 49427400 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49430243 49430311 49430243 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49430438 49430534 49430438 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49430749 49430955 49430749 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49431157 49431281 49431157 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49431686 49431790 49431686 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49431883 49432055 49431883 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49432146 49432236 49432146 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49432480 49432629 49432480 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 CDS 49432719 49432982 49432719 ID=Msa0645050-mRNA-1:cds;Parent=Msa0645050-mRNA-1
chr4_3 three_prime_UTR 49432983 49433591 49432983 ID=Msa0645050-mRNA-1:three_prime_utr;Parent=Msa0645050-mRNA-1
Gene Sequence

>Msa0645050

ATGGGAACTTTGGAGATGGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAAAGTCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATCTTCATGGCCCTCATGCAAGATTTAGGGAAACACCGTCTTGAAGCTTTTAGAGACGAGATAGGAACGTTAGTGAAGACCTTAAATCTTGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTTTGGGTCTCGTCCTCATTATTTCATCTTGGAATTTACCCTTTGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGTAGCAGTGTTAAAACCTTCAGAGTTGTCTCCTGCATGTTCCTCTCTACTTGCTTCTGGCATTACCGCTTACTTGGACAATAAAGCCATTAAGGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTAGTGCACGAGTGGGGAGCATTGTCATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGGCCGTGAAGCGGATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATTGTGGAAAAGAGTTGCTGTTCAAAATTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGAATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAGGGTTAAAGAATCTGTGGTTTATGGTGGCTCAATTGACGAAGAAAACTTATTTATTGAGCCAACAATATTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCATTACTTCCAATTATTACTGTGGATAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAACCTCTTGCCCTTTATGTTTTCACCAAGAACCAAACATTGCAAAGCAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAATATGCAGCAGATAGTCTACCATTTGGAGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG
Protein sequence

>Msa0645050

MGTLEMDHLKNMREYFRSGKTKEASWRKSQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGLVLIISSWNLPFGLSLEPLIGAIAAGNVAVLKPSELSPACSSLLASGITAYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNKQHLTRLKKLLDDQRVKESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVDKIEDSIEFISSRPKPLALYVFTKNQTLQSRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC*