AlfalfaGEDB | Msa1355520

M. sativa cultivar zhongmu-4 / Msa1355520

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355520	XP_003597439.1	95.759	448	16	2	1	448	1	445	0.0	884

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355520	G7IUC5	95.759	448	16	2	1	448	1	445	0.0	884

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1355520	TF	Trihelix

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa1355520	0.813264	2.794951e-51	-8.615850e-47
Msa0055070	Msa1355520	0.809736	1.633056e-50	-8.615850e-47
Msa0101020	Msa1355520	0.811191	7.922095e-51	-8.615850e-47
Msa0111080	Msa1355520	0.812651	3.808756e-51	-8.615850e-47
Msa0142500	Msa1355520	0.811133	8.151554e-51	-8.615850e-47
Msa0145110	Msa1355520	0.810757	9.836829e-51	-8.615850e-47
Msa0154920	Msa1355520	0.812116	4.985375e-51	-8.615850e-47
Msa0264690	Msa1355520	0.833727	4.515610e-56	-8.615850e-47
Msa0439890	Msa1355520	0.807261	5.510015e-50	-8.615850e-47
Msa0443430	Msa1355520	0.808807	2.583029e-50	-8.615850e-47

Showing 1 to 10 of 25 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355520	MtrunA17_Chr2g0328901	95.759	448	16	2	1	448	1	445	0.0	884
Msa1355520	MtrunA17_Chr1g0201951	47.222	360	163	8	85	419	92	449	6.36e-95	293
Msa1355520	MtrunA17_Chr6g0463911	46.154	338	155	4	103	414	105	441	1.63e-82	261
Msa1355520	MtrunA17_Chr7g0265561	46.748	246	106	7	4	243	3	229	9.82e-60	202
Msa1355520	MtrunA17_Chr1g0179561	60.248	161	58	3	84	243	94	249	1.07e-55	192
Msa1355520	MtrunA17_Chr1g0179561	40.541	111	62	1	310	416	371	481	6.04e-23	101

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355520	AT1G21200.1	39.574	470	206	12	1	419	1	443	2.18e-88	276
Msa1355520	AT1G21200.2	39.574	470	206	12	1	419	1	443	2.18e-88	276
Msa1355520	AT1G76870.2	42.941	340	162	10	84	412	60	378	2.14e-71	231
Msa1355520	AT1G76870.1	42.941	340	162	10	84	412	60	378	2.14e-71	231
Msa1355520	AT1G76870.3	42.941	340	162	10	84	412	60	378	2.14e-71	231
Msa1355520	AT3G10040.1	34.452	447	242	8	11	430	6	428	6.31e-66	218

Showing 1 to 6 of 6 entries

Previous1Next

Find 116 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTGACTTCCAAGCC+AGG	0.526284	tig0014834:-11514	Msa1355520:CDS
AAAGCTGAAGCAGAGAGATC+AGG	0.507837	tig0014834:-11369	Msa1355520:CDS
AAATGTTGACTTCCAAGCCA+GGG	0.593930	tig0014834:-11513	Msa1355520:CDS
AACTTATCCTCACACTGCTG+CGG	0.618536	tig0014834:+12073	None:intergenic
AACTTGAGAGTGAAATGGCA+AGG	0.557312	tig0014834:-11613	Msa1355520:CDS
AAGACCCTGCAAAGTCTCCG+TGG	0.649124	tig0014834:-11583	Msa1355520:CDS
AAGAGGTTGAATGAGATGCT+TGG	0.576189	tig0014834:-12028	Msa1355520:CDS
AAGGACTCAAGAGATCACGA+TGG	0.786747	tig0014834:-11803	Msa1355520:CDS
AAGTCAAGATCATGACTATT+GGG	0.423237	tig0014834:+11851	None:intergenic
AAGTGGACGGATAATGTGGT+TGG	0.613391	tig0014834:-12244	Msa1355520:CDS

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAAGATCATGACTATT+GGG	+	tig0014834:12012-12031	None:intergenic	30.0%
TGAAGATAACAATGAAAGTG+AGG	-	tig0014834:12095-12114	Msa1355520:CDS	30.0%
GGAATTAATATTAATGCACG+TGG	-	tig0014834:12135-12154	Msa1355520:CDS	30.0%
AATAAATTAAGTGAGGAGGA+TGG	-	tig0014834:12192-12211	Msa1355520:CDS	30.0%
AAGTCAAGATCATGACTATT+GGG	+	tig0014834:12012-12031	None:intergenic	30.0%
TGAAGATAACAATGAAAGTG+AGG	-	tig0014834:12095-12114	Msa1355520:CDS	30.0%
GGAATTAATATTAATGCACG+TGG	-	tig0014834:12135-12154	Msa1355520:CDS	30.0%
AATAAATTAAGTGAGGAGGA+TGG	-	tig0014834:12192-12211	Msa1355520:CDS	30.0%
ACCTTGAATCTCCATTTCAT+AGG	-	tig0014834:11329-11348	Msa1355520:CDS	35.0%
TGTTGTTGATGCCTATGAAA+TGG	+	tig0014834:11343-11362	None:intergenic	35.0%

Showing 1 to 10 of 278 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
tig0014834	gene	11268	12614	11268	ID=Msa1355520;Name=Msa1355520
tig0014834	mRNA	11268	12614	11268	ID=Msa1355520-mRNA-1;Parent=Msa1355520;Name=Msa1355520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|448
tig0014834	exon	11268	12614	11268	ID=Msa1355520-mRNA-1:exon:9529;Parent=Msa1355520-mRNA-1
tig0014834	CDS	11268	12614	11268	ID=Msa1355520-mRNA-1:cds;Parent=Msa1355520-mRNA-1

Gene Sequence

>Msa1355520

ATGAATGGTTCTTCTGGTTTGGGTGGTGGGTTTTTGAGTGGTCCCGCTGGGGGTATTTTGGACCTTGAATCTCCATTTCATAGGCATCAACAACAGACTCAGTTAGCTCATGGTCAACAACATATGAATATGATAACTGGTTTGGAAAATGATGATAATAATAATCAAATTGGTTTAATTGAAGTGAAAAATTTGAATTTTGGTAAAGGAAAGGGAGTTGCTAGTTCTAATCATGATAATAGTAATGATATGAGCGAAGACGATGAGCATGGTTACGGAGAAGATGGGAATTGCGAGAATTTTTTCGATGGTGGGAAGGGGAAAAAAGGGTCTCCTTGGCAGAGAATGAAGTGGACGGATAATGTGGTTGGGCTTCTTATAGCAGTGGTGAGTTGTGTTGGTGATGATGGAACAATTAGTGGTGTGGATGGTGTTAAGAAGAAATCCGGGGTGTCACAGAAGAAGGGTAAGTGGAAAACTGTTTCTAAGATAATGATAAGTAAAGGTTGTCATGTGTCGCCGCAGCAGTGTGAGGATAAGTTCAATGACTTGAATAAGAGATATAAGAGGTTGAATGAGATGCTTGGTAGGGGAACTTGTTGTCAGGTGGTTGAGAATCCTGCATTGATGGATTCAATGGTTAACTTGTCTGCTAAGGCGAAGGATGATGTTAGAAAGATATTGAGCTCAAAACATTTGTTTTATAAAGAAATGTGTGCATACCACAATGGTCAAAGGATACCCAATAGTCATGATCTTGACTTGCATAGTTATTCGTTGGAACACGGGAAGGACTCAAGAGATCACGATGGCTCTGATGATGAAGATGAAGATAACAATGAAAGTGAGGATGATGAGTTGGATAATGGAATTAATATTAATGCACGTGGTGATGGAGGGAGAATGGAAGGGTTTTGTGATAGAAATAAATTAAGTGAGGAGGATGGCCACTTTTGGCCGCAGTCTAGTGGGATGAAGAAACTTGAGAGTGAAATGGCAAGGGTTTTTCAAGACCCTGCAAAGTCTCCGTGGGAGAAAAGAGAGTGGATTAAGGAACAGTTGTTGCAGCTCCAAGAGCAAAATGTTGACTTCCAAGCCAGGGCTTTTGAACTTCAGAAACAGCGGTTTAAGTGGTTAAGATACCGCAGCAAGAAGGATAGGGAGCTGGAGAAGCTGGCGATGGAGAACAAGAGAATGCAATTTGAAAATGAGCACAGGATCTTAAAGCTGAAGCAGAGAGATCAGGAGGCAGAGTTCAGTAGGTCTGAGATGTCCTTAGACCCTACCTCCATTGGTATCAAGAGGCCACAAGGGAGGGAACATATCAACTTGGCTAGACAGCACTAG

Protein sequence

>Msa1355520

MNGSSGLGGGFLSGPAGGILDLESPFHRHQQQTQLAHGQQHMNMITGLENDDNNNQIGLIEVKNLNFGKGKGVASSNHDNSNDMSEDDEHGYGEDGNCENFFDGGKGKKGSPWQRMKWTDNVVGLLIAVVSCVGDDGTISGVDGVKKKSGVSQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEMLGRGTCCQVVENPALMDSMVNLSAKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNSHDLDLHSYSLEHGKDSRDHDGSDDEDEDNNESEDDELDNGININARGDGGRMEGFCDRNKLSEEDGHFWPQSSGMKKLESEMARVFQDPAKSPWEKREWIKEQLLQLQEQNVDFQARAFELQKQRFKWLRYRSKKDRELEKLAMENKRMQFENEHRILKLKQRDQEAEFSRSEMSLDPTSIGIKRPQGREHINLARQH*