AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0965020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965020 MtrunA17_Chr6g0485241 97.333 375 5 3 1 375 1 370 0.0 728
Msa0965020 MtrunA17_Chr2g0331931 51.754 228 98 5 132 354 273 493 6.38e-58 196
Msa0965020 MtrunA17_Chr8g0344681 28.358 268 144 6 133 353 68 334 3.88e-21 93.6
Msa0965020 MtrunA17_Chr4g0041151 37.190 121 58 4 119 222 5 124 6.03e-17 80.5
Msa0965020 MtrunA17_Chr1g0179531 38.235 102 60 2 131 231 131 230 4.94e-16 79.3
Msa0965020 MtrunA17_Chr2g0283871 35.106 94 56 2 133 222 23 115 2.59e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965020 AT3G24490.1 56.957 230 91 2 132 361 89 310 1.25e-82 255
Msa0965020 AT3G58630.2 27.055 292 156 7 115 353 7 294 3.96e-27 109
Msa0965020 AT3G58630.1 27.055 292 156 7 115 353 7 294 4.68e-27 109
Msa0965020 AT3G10030.2 33.149 181 109 4 47 225 82 252 2.53e-18 87.0
Msa0965020 AT3G10030.1 33.149 181 109 4 47 225 82 252 4.95e-18 85.9
Msa0965020 AT5G05550.3 32.468 231 122 7 133 351 24 232 8.95e-18 82.4
Msa0965020 AT5G05550.1 32.468 231 122 7 133 351 24 232 1.27e-17 82.0
Msa0965020 AT3G14180.1 37.405 131 65 4 104 227 58 178 1.66e-17 84.0
Msa0965020 AT5G05550.2 32.468 231 122 7 133 351 24 232 1.75e-17 81.6
Msa0965020 AT1G54060.1 28.846 260 140 8 133 351 94 349 1.29e-16 80.9
Msa0965020 AT3G11100.1 33.333 231 125 7 133 351 22 235 1.42e-16 79.0
Msa0965020 AT3G24860.1 35.870 92 53 1 133 224 65 150 6.50e-13 69.3

Find 93 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCTTGTGGTGTTGATTC+AGG 0.155144 6_3:+92251771 Msa0965020:CDS
GTTGCAGAAGAAGCAGATTT+TGG 0.210644 6_3:+92252082 Msa0965020:CDS
GGAGGCTTCGTATAGGATTT+TGG 0.224205 6_3:+92251950 Msa0965020:CDS
CTGAAAGAGTGCACCAGTTT+TGG 0.226370 6_3:+92255274 Msa0965020:three_prime_UTR
GGTGAGAAGTTTCTTCAAAT+TGG 0.239028 6_3:+92251513 Msa0965020:CDS
AAGCTTATATTCAGCTGAAT+AGG 0.276012 6_3:-92255444 None:intergenic
CGTTTGTGTTGTTAGAGATA+TGG 0.280545 6_3:+92251490 Msa0965020:CDS
TGGGTTTAAGTTCTTGTAAA+TGG 0.286067 6_3:+92251691 Msa0965020:CDS
AGTGGCCCTAGTGGCGGTTT+TGG 0.306452 6_3:+92251333 Msa0965020:CDS
TCGAGTTCTGTCCATTCCTC+TGG 0.317779 6_3:+92251441 Msa0965020:CDS
TGATATTGTAAGTTACGAAT+TGG 0.332259 6_3:-92251162 None:intergenic
TAGAATGGATGAAATGGGTT+TGG 0.334179 6_3:+92251671 Msa0965020:CDS
TCTTAGGTATTAAATAATCT+TGG 0.335426 6_3:+92255236 Msa0965020:intron
GAAGAGTAGAATGGATGAAA+TGG 0.336184 6_3:+92251665 Msa0965020:CDS
TGCAATCTTGCCTCCAAAAC+TGG 0.346573 6_3:-92255287 None:intergenic
GTTATAATCATCGAATTCTT+CGG 0.353879 6_3:-92251226 None:intergenic
AGAATGGATGAAATGGGTTT+GGG 0.358595 6_3:+92251672 Msa0965020:CDS
TTATAATCATCGAATTCTTC+GGG 0.363359 6_3:-92251225 None:intergenic
ACAATTGCACAATAATTTGC+AGG 0.368148 6_3:-92255395 None:intergenic
GTGAGAAGTTTCTTCAAATT+GGG 0.369920 6_3:+92251514 Msa0965020:CDS
AGCTTATATTCAGCTGAATA+GGG 0.378149 6_3:-92255443 None:intergenic
AACGTAGATGAAGACGGAAT+TGG 0.404212 6_3:+92251246 Msa0965020:CDS
GATGAAGACGGAATTGGAAA+TGG 0.406005 6_3:+92251252 Msa0965020:CDS
GTTTGTGTTGTTAGAGATAT+GGG 0.412812 6_3:+92251491 Msa0965020:CDS
TCATTTGTGTTCTCTGACTG+TGG 0.426566 6_3:+92255332 Msa0965020:three_prime_UTR
GATATTGTAAGTTACGAATT+GGG 0.429997 6_3:-92251161 None:intergenic
ATACCAGGGTTTATTTGAAT+AGG 0.432946 6_3:+92251811 Msa0965020:CDS
TTGCTTGTGGTGTTGATTCA+GGG 0.434188 6_3:+92251772 Msa0965020:CDS
AAGAGTAGAATGGATGAAAT+GGG 0.435287 6_3:+92251666 Msa0965020:CDS
CCACCACCAAAACCGCCACT+AGG 0.438484 6_3:-92251339 None:intergenic
TAAGAAAGAGAAGAGTAGAA+TGG 0.459638 6_3:+92251656 Msa0965020:CDS
TTATGAATTGTTGCCGCCAT+GGG 0.464247 6_3:+92251380 Msa0965020:CDS
CTGAGGAGTTGAAAGTTGAA+AGG 0.467561 6_3:+92251586 Msa0965020:CDS
GATTCAAGATACCCATCAAA+AGG 0.470251 6_3:+92251096 Msa0965020:CDS
GGAGTTGGAGAAGGTGAGGT+TGG 0.470646 6_3:+92252040 Msa0965020:CDS
GGCTGAAATATCGAAAATAC+AGG 0.472979 6_3:+92252115 Msa0965020:CDS
GGAATTGGAAATGGGTATGT+TGG 0.473631 6_3:+92251261 Msa0965020:CDS
CGAGTTCTGTCCATTCCTCT+GGG 0.474330 6_3:+92251442 Msa0965020:CDS
TACTAAGAGGCAACAGATGA+TGG 0.477066 6_3:+92252019 Msa0965020:CDS
ATGAAGACGGAATTGGAAAT+GGG 0.477798 6_3:+92251253 Msa0965020:CDS
TCGAGTGCGAGACAAGAGTA+TGG 0.478047 6_3:+92251747 Msa0965020:CDS
ATTCCTCTGGGTCGGAGGAA+TGG 0.482329 6_3:+92251454 Msa0965020:CDS
TTCTGTCCATTCCTCTGGGT+CGG 0.485623 6_3:+92251446 Msa0965020:CDS
GTGTAGGAGTGTATTGGATA+AGG 0.493185 6_3:+92251620 Msa0965020:CDS
AAGAGGAGGAGGCTTCGTAT+AGG 0.493270 6_3:+92251943 Msa0965020:CDS
GTGTATTGGATAAGGTGAAG+AGG 0.499755 6_3:+92251628 Msa0965020:CDS
ATTATGAATTGTTGCCGCCA+TGG 0.507987 6_3:+92251379 Msa0965020:CDS
GGATGATGTCGATAGGGAAG+AGG 0.514505 6_3:+92251926 Msa0965020:CDS
GAATGGATTTGATGAGATGA+GGG 0.516784 6_3:+92251836 Msa0965020:CDS
GAGGCAACAGATGATGGAGT+TGG 0.516973 6_3:+92252025 Msa0965020:CDS
TGATGTCGATAGGGAAGAGG+AGG 0.521958 6_3:+92251929 Msa0965020:CDS
TGTCGATAGGGAAGAGGAGG+AGG 0.528458 6_3:+92251932 Msa0965020:CDS
CTTCAATTCAATGGACGACA+TGG 0.528859 6_3:+92251068 Msa0965020:exon
AGAAGATTGAGAATACTAAG+AGG 0.534145 6_3:+92252006 Msa0965020:CDS
CGAATGGATTTGATGAGATG+AGG 0.535045 6_3:+92251835 Msa0965020:CDS
CACCACCAAAACCGCCACTA+GGG 0.545654 6_3:-92251338 None:intergenic
CGATGAGGATGATGTCGATA+GGG 0.548936 6_3:+92251920 Msa0965020:CDS
GGATGATGATGATGAGGATG+AGG 0.549901 6_3:+92251887 Msa0965020:CDS
AGTATGTGTTTATGAATACC+AGG 0.551827 6_3:+92251796 Msa0965020:CDS
TGCTTGTGGTGTTGATTCAG+GGG 0.553404 6_3:+92251773 Msa0965020:CDS
ATTCCTCCGACCCAGAGGAA+TGG 0.555282 6_3:-92251452 None:intergenic
TTGTTGCCGCCATGGGGCAG+TGG 0.558563 6_3:+92251387 Msa0965020:CDS
AGAAGTTTCTTCAAATTGGG+AGG 0.559816 6_3:+92251517 Msa0965020:CDS
GTTTATTTGAATAGGTCGAA+TGG 0.561187 6_3:+92251819 Msa0965020:CDS
GGCACAGTGTAGGAGTGTAT+TGG 0.561474 6_3:+92251614 Msa0965020:CDS
ACAGATGATGGAGTTGGAGA+AGG 0.562220 6_3:+92252031 Msa0965020:CDS
AAAGGAATGTGGCACAGTGT+AGG 0.572005 6_3:+92251604 Msa0965020:CDS
ATTCAAGATACCCATCAAAA+GGG 0.572324 6_3:+92251097 Msa0965020:CDS
GCGATGAGGATGATGTCGAT+AGG 0.584075 6_3:+92251919 Msa0965020:CDS
TGTCCATTCCTCTGGGTCGG+AGG 0.586004 6_3:+92251449 Msa0965020:CDS
GAGGAATAGTTTGAGATCAG+AGG 0.586253 6_3:+92251536 Msa0965020:CDS
TTCTGAGGATGATGATGATG+AGG 0.586254 6_3:+92251881 Msa0965020:CDS
TCAGAACTCTCAGACTCACC+AGG 0.597701 6_3:-92251864 None:intergenic
TGGTGAGTCTGAGAGTTCTG+AGG 0.600777 6_3:+92251866 Msa0965020:CDS
TGATGGAGTTGGAGAAGGTG+AGG 0.617953 6_3:+92252036 Msa0965020:CDS
ATAGTTTGAGATCAGAGGAA+TGG 0.618950 6_3:+92251541 Msa0965020:CDS
ATGCGAAGTGGCCCTAGTGG+CGG 0.619751 6_3:+92251327 Msa0965020:CDS
GAAAATTTACCACTGCCCCA+TGG 0.622030 6_3:-92251396 None:intergenic
AGTTGCTGAGAAAGTTTCTG+AGG 0.628405 6_3:+92251569 Msa0965020:CDS
CGACCTATTCAAATAAACCC+TGG 0.636066 6_3:-92251814 None:intergenic
GATTATAACGTAGATGAAGA+CGG 0.641525 6_3:+92251240 Msa0965020:CDS
TATGAATTGTTGCCGCCATG+GGG 0.651070 6_3:+92251381 Msa0965020:CDS
GATGAGATGAGGGATAGTCC+TGG 0.652387 6_3:+92251846 Msa0965020:CDS
CAAGAGTATGGACTTGCTTG+TGG 0.652939 6_3:+92251759 Msa0965020:CDS
GTTGAAAGTTGAAAGGAATG+TGG 0.654797 6_3:+92251593 Msa0965020:CDS
TTTGTGTTGTTAGAGATATG+GGG 0.660660 6_3:+92251492 Msa0965020:CDS
AGTCAGAGAACACAAATGAG+TGG 0.662722 6_3:-92255328 None:intergenic
GTATGTGTTTATGAATACCA+GGG 0.664776 6_3:+92251797 Msa0965020:CDS
AAAATGCGAAGTGGCCCTAG+TGG 0.671315 6_3:+92251324 Msa0965020:CDS
TGTCCATTCCTCCGACCCAG+AGG 0.680725 6_3:-92251457 None:intergenic
TGATGCTGATGGTGACGATG+AGG 0.699210 6_3:+92252148 Msa0965020:CDS
GAAGCAGTAGATGATGCTGA+TGG 0.735151 6_3:+92252137 Msa0965020:CDS
AATTTACCACTGCCCCATGG+CGG 0.737952 6_3:-92251393 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAATTTGAATTTTTT+TGG - chr6_3:92251008-92251027 None:intergenic 10.0%
!!! AACTGTTTAATTTTTTAAAA+TGG + chr6_3:92254828-92254847 Msa0965020:intron 10.0%
!!! AATTTGAATTTTTTTGGTTA+GGG - chr6_3:92251002-92251021 None:intergenic 15.0%
!!! AAATTTGAATTTTTTTGGTT+AGG - chr6_3:92251003-92251022 None:intergenic 15.0%
!!! TTTATATTTTTATACAAGTG+AGG - chr6_3:92252793-92252812 None:intergenic 15.0%
!! TTTATCAATAAAACCATTAA+GGG - chr6_3:92254622-92254641 None:intergenic 15.0%
!!! TTTTACATTTTTTCTATCTT+AGG + chr6_3:92255220-92255239 Msa0965020:intron 15.0%
!!! TTTCGTTTTTTTTGTTTGTT+TGG - chr6_3:92250949-92250968 None:intergenic 20.0%
!! ATTGAATTGAAGAAAAATTG+GGG - chr6_3:92251060-92251079 None:intergenic 20.0%
!! CATTGAATTGAAGAAAAATT+GGG - chr6_3:92251061-92251080 None:intergenic 20.0%
!!! GAAATTTTGAAGAAAATGTT+GGG + chr6_3:92251283-92251302 Msa0965020:CDS 20.0%
!! ATTGCTTATGATTTGATTAT+AGG + chr6_3:92252273-92252292 Msa0965020:intron 20.0%
!! GAAAAGAAAACTATTGAAAT+AGG + chr6_3:92253036-92253055 Msa0965020:intron 20.0%
!! TTTCTTAAACAAAACAACTA+AGG - chr6_3:92253596-92253615 None:intergenic 20.0%
!! AAAAAAAAAAAATCGAACTC+AGG - chr6_3:92253933-92253952 None:intergenic 20.0%
!! TTATCAATAAAACCATTAAG+GGG - chr6_3:92254621-92254640 None:intergenic 20.0%
!! GTTTATCAATAAAACCATTA+AGG - chr6_3:92254623-92254642 None:intergenic 20.0%
!! AAATCAAGCTCATAAATAAA+AGG - chr6_3:92254720-92254739 None:intergenic 20.0%
!!! TTTATTAAGGAGTTTGAAAT+TGG + chr6_3:92254953-92254972 Msa0965020:intron 20.0%
!! AGAAATAGTCTAAATAATCA+AGG - chr6_3:92255138-92255157 None:intergenic 20.0%
!! TCTTAGGTATTAAATAATCT+TGG + chr6_3:92255236-92255255 Msa0965020:intron 20.0%
!!! TTTGTGTTTTTGTTCAGTTT+GGG - chr6_3:92250978-92250997 None:intergenic 25.0%
!!! TTTTGTGTTTTTGTTCAGTT+TGG - chr6_3:92250979-92250998 None:intergenic 25.0%
! CCATTGAATTGAAGAAAAAT+TGG - chr6_3:92251062-92251081 None:intergenic 25.0%
!! CCAATTTTTCTTCAATTCAA+TGG + chr6_3:92251059-92251078 Msa0965020:exon 25.0%
! GATATTGTAAGTTACGAATT+GGG - chr6_3:92251164-92251183 None:intergenic 25.0%
! TGATATTGTAAGTTACGAAT+TGG - chr6_3:92251165-92251184 None:intergenic 25.0%
! TTATAATCATCGAATTCTTC+GGG - chr6_3:92251228-92251247 None:intergenic 25.0%
! GTTATAATCATCGAATTCTT+CGG - chr6_3:92251229-92251248 None:intergenic 25.0%
!!! GGAAATTTTGAAGAAAATGT+TGG + chr6_3:92251282-92251301 Msa0965020:CDS 25.0%
!! AAATTTTCGAACTTTAATCG+TGG + chr6_3:92251411-92251430 Msa0965020:CDS 25.0%
! ATATCCATCTTCTTGAAAAA+TGG - chr6_3:92251717-92251736 None:intergenic 25.0%
!! CTGATTCGATTCAAAAATTT+GGG + chr6_3:92251973-92251992 Msa0965020:CDS 25.0%
! ATAATCTCAGTGAATAATGT+AGG + chr6_3:92252189-92252208 Msa0965020:intron 25.0%
! ATTGTAGCACTAAACAAATT+TGG - chr6_3:92252317-92252336 None:intergenic 25.0%
!!! TTTTTTTTGTGTGTTTTGAC+CGG + chr6_3:92252523-92252542 Msa0965020:intron 25.0%
! TTCACTTCATATTGTTTGTT+TGG + chr6_3:92252582-92252601 Msa0965020:intron 25.0%
!! TTTTTCTGACTAAATGTGAA+TGG + chr6_3:92252962-92252981 Msa0965020:intron 25.0%
! TCTAACTTACACTGAAAAAA+AGG + chr6_3:92253357-92253376 Msa0965020:intron 25.0%
! CTAACTTACACTGAAAAAAA+GGG + chr6_3:92253358-92253377 Msa0965020:intron 25.0%
! TAGTCTTTACACAAATTGAT+TGG + chr6_3:92253651-92253670 Msa0965020:intron 25.0%
!!! TTTTGTTTTTATGCTTTCAC+TGG + chr6_3:92253694-92253713 Msa0965020:intron 25.0%
! CTGTATTTGTAATTGTATCA+TGG + chr6_3:92253772-92253791 Msa0965020:intron 25.0%
! AACAAAATTGCTTTCTAATG+TGG + chr6_3:92253870-92253889 Msa0965020:intron 25.0%
! ACAAAATTGCTTTCTAATGT+GGG + chr6_3:92253871-92253890 Msa0965020:intron 25.0%
! ATTAGATGTTGCAAATTCAT+GGG + chr6_3:92254461-92254480 Msa0965020:intron 25.0%
! CTATACTACATAAGCAAAAA+AGG - chr6_3:92254855-92254874 None:intergenic 25.0%
! ATGTAGTATAGAAAGAAACT+AGG + chr6_3:92254864-92254883 Msa0965020:intron 25.0%
! AGTAGCAAAATGTAAAGATA+GGG - chr6_3:92254891-92254910 None:intergenic 25.0%
!!! TGACGAAGTTTTTTGTTTTT+TGG + chr6_3:92254923-92254942 Msa0965020:intron 25.0%
!! TTTTGGCAACAACTTTATTA+AGG + chr6_3:92254940-92254959 Msa0965020:intron 25.0%
!!! TCTATATATGTGTCATTTAC+AGG + chr6_3:92255006-92255025 Msa0965020:intron 25.0%
!!! CTATATATGTGTCATTTACA+GGG + chr6_3:92255007-92255026 Msa0965020:intron 25.0%
!!! TATATATGTGTCATTTACAG+GGG + chr6_3:92255008-92255027 Msa0965020:intron 25.0%
!! TTGTGTTTTTGTTCAGTTTG+GGG - chr6_3:92250977-92250996 None:intergenic 30.0%
ATTCAAGATACCCATCAAAA+GGG + chr6_3:92251097-92251116 Msa0965020:CDS 30.0%
GATTATAACGTAGATGAAGA+CGG + chr6_3:92251240-92251259 Msa0965020:CDS 30.0%
AAAAAGAGAAAAATGCGAAG+TGG + chr6_3:92251315-92251334 Msa0965020:CDS 30.0%
! GTTTGTGTTGTTAGAGATAT+GGG + chr6_3:92251491-92251510 Msa0965020:CDS 30.0%
! TTTGTGTTGTTAGAGATATG+GGG + chr6_3:92251492-92251511 Msa0965020:CDS 30.0%
GTGAGAAGTTTCTTCAAATT+GGG + chr6_3:92251514-92251533 Msa0965020:CDS 30.0%
TAAGAAAGAGAAGAGTAGAA+TGG + chr6_3:92251656-92251675 Msa0965020:CDS 30.0%
AAGAGTAGAATGGATGAAAT+GGG + chr6_3:92251666-92251685 Msa0965020:CDS 30.0%
! TGGGTTTAAGTTCTTGTAAA+TGG + chr6_3:92251691-92251710 Msa0965020:CDS 30.0%
AGTATGTGTTTATGAATACC+AGG + chr6_3:92251796-92251815 Msa0965020:CDS 30.0%
GTATGTGTTTATGAATACCA+GGG + chr6_3:92251797-92251816 Msa0965020:CDS 30.0%
ATACCAGGGTTTATTTGAAT+AGG + chr6_3:92251811-92251830 Msa0965020:CDS 30.0%
GTTTATTTGAATAGGTCGAA+TGG + chr6_3:92251819-92251838 Msa0965020:CDS 30.0%
!! GCTGATTCGATTCAAAAATT+TGG + chr6_3:92251972-92251991 Msa0965020:CDS 30.0%
AGAAGATTGAGAATACTAAG+AGG + chr6_3:92252006-92252025 Msa0965020:CDS 30.0%
!! GTTGGATTTTAATAGGGAAT+TGG + chr6_3:92252058-92252077 Msa0965020:CDS 30.0%
TGGATTGAGTTAATTTCTCA+AGG + chr6_3:92252480-92252499 Msa0965020:intron 30.0%
ATAAGATCAATTCCCAATGA+AGG + chr6_3:92252546-92252565 Msa0965020:intron 30.0%
TAAGATCAATTCCCAATGAA+GGG + chr6_3:92252547-92252566 Msa0965020:intron 30.0%
TTCATATTGTTTGTTTGGCT+TGG + chr6_3:92252587-92252606 Msa0965020:intron 30.0%
GTTTCCTAATCAACTTATCT+TGG + chr6_3:92252711-92252730 Msa0965020:intron 30.0%
!! CTAACCAAGATAAGTTGATT+AGG - chr6_3:92252718-92252737 None:intergenic 30.0%
! ATCACTTGGTGAAATGAATT+TGG + chr6_3:92252764-92252783 Msa0965020:intron 30.0%
AATGTGAATGGAAGAACATT+AGG + chr6_3:92252974-92252993 Msa0965020:intron 30.0%
TGATGTCAAATAACCTTGAA+TGG + chr6_3:92253256-92253275 Msa0965020:intron 30.0%
GATGTCAAATAACCTTGAAT+GGG + chr6_3:92253257-92253276 Msa0965020:intron 30.0%
AAAATAACATGACCCATTCA+AGG - chr6_3:92253272-92253291 None:intergenic 30.0%
! CTTAGTCTCTATACATGTTT+TGG - chr6_3:92253300-92253319 None:intergenic 30.0%
GAAAAGTGAAACACAAGAAA+TGG + chr6_3:92253527-92253546 Msa0965020:intron 30.0%
AAATGTCGCTAATGCATAAA+AGG - chr6_3:92253677-92253696 None:intergenic 30.0%
TCACCAATTCTTGAATTCTA+AGG + chr6_3:92253983-92254002 Msa0965020:intron 30.0%
CACCAATTCTTGAATTCTAA+GGG + chr6_3:92253984-92254003 Msa0965020:intron 30.0%
CAAACCAGACAAAAACAAAA+CGG - chr6_3:92254179-92254198 None:intergenic 30.0%
!!! TCATTTTTTCATGCTCTGTT+TGG + chr6_3:92254271-92254290 Msa0965020:intron 30.0%
AAAATATTGCTTCCTACGTT+AGG + chr6_3:92254345-92254364 Msa0965020:intron 30.0%
AAATATTGCTTCCTACGTTA+GGG + chr6_3:92254346-92254365 Msa0965020:intron 30.0%
! GACTTGAATTTTTGAATCAC+TGG - chr6_3:92254423-92254442 None:intergenic 30.0%
GATTCAAAAATTCAAGTCCT+TGG + chr6_3:92254425-92254444 Msa0965020:intron 30.0%
CATGAATTTGCAACATCTAA+TGG - chr6_3:92254462-92254481 None:intergenic 30.0%
CATTAGATGTTGCAAATTCA+TGG + chr6_3:92254460-92254479 Msa0965020:intron 30.0%
! TTAAGCTCAATTGATTTCCA+TGG + chr6_3:92254576-92254595 Msa0965020:intron 30.0%
TGAAATTGTTGGAATTTGCA+CGG - chr6_3:92254665-92254684 None:intergenic 30.0%
GCAAATTCCAACAATTTCAT+TGG + chr6_3:92254666-92254685 Msa0965020:intron 30.0%
CCTAAAAGAACAATTGGAAA+AGG - chr6_3:92254765-92254784 None:intergenic 30.0%
! CCTTTTCCAATTGTTCTTTT+AGG + chr6_3:92254762-92254781 Msa0965020:intron 30.0%
TTCATGCCTAAAAGAACAAT+TGG - chr6_3:92254771-92254790 None:intergenic 30.0%
CAGTAGCAAAATGTAAAGAT+AGG - chr6_3:92254892-92254911 None:intergenic 30.0%
TTTCTACTGCCAAGTTTAAA+TGG + chr6_3:92255153-92255172 Msa0965020:intron 30.0%
! TGCTTTTCACCATTTAAACT+TGG - chr6_3:92255165-92255184 None:intergenic 30.0%
! ACAATTGCACAATAATTTGC+AGG - chr6_3:92255398-92255417 None:intergenic 30.0%
AGCTTATATTCAGCTGAATA+GGG - chr6_3:92255446-92255465 None:intergenic 30.0%
AAGCTTATATTCAGCTGAAT+AGG - chr6_3:92255447-92255466 None:intergenic 30.0%
GATTCAAGATACCCATCAAA+AGG + chr6_3:92251096-92251115 Msa0965020:CDS 35.0%
!! GGTGTTTTTGACGAAGATTA+GGG - chr6_3:92251143-92251162 None:intergenic 35.0%
ATGAAGACGGAATTGGAAAT+GGG + chr6_3:92251253-92251272 Msa0965020:CDS 35.0%
! TTTTCGAACTTTAATCGTGG+TGG + chr6_3:92251414-92251433 Msa0965020:CDS 35.0%
! CGTTTGTGTTGTTAGAGATA+TGG + chr6_3:92251490-92251509 Msa0965020:CDS 35.0%
GGTGAGAAGTTTCTTCAAAT+TGG + chr6_3:92251513-92251532 Msa0965020:CDS 35.0%
AGAAGTTTCTTCAAATTGGG+AGG + chr6_3:92251517-92251536 Msa0965020:CDS 35.0%
! ATAGTTTGAGATCAGAGGAA+TGG + chr6_3:92251541-92251560 Msa0965020:CDS 35.0%
GTTGAAAGTTGAAAGGAATG+TGG + chr6_3:92251593-92251612 Msa0965020:CDS 35.0%
GAAGAGTAGAATGGATGAAA+TGG + chr6_3:92251665-92251684 Msa0965020:CDS 35.0%
! TAGAATGGATGAAATGGGTT+TGG + chr6_3:92251671-92251690 Msa0965020:CDS 35.0%
! AGAATGGATGAAATGGGTTT+GGG + chr6_3:92251672-92251691 Msa0965020:CDS 35.0%
!!! ATGGCCATTTTTCAAGAAGA+TGG + chr6_3:92251710-92251729 Msa0965020:CDS 35.0%
! GAATGGATTTGATGAGATGA+GGG + chr6_3:92251836-92251855 Msa0965020:CDS 35.0%
!! AGGTGAGGTTGGATTTTAAT+AGG + chr6_3:92252051-92252070 Msa0965020:CDS 35.0%
!! GGTGAGGTTGGATTTTAATA+GGG + chr6_3:92252052-92252071 Msa0965020:CDS 35.0%
! AGAAGAAGCAGATTTTGGAT+AGG + chr6_3:92252087-92252106 Msa0965020:CDS 35.0%
! GAAGAAGCAGATTTTGGATA+GGG + chr6_3:92252088-92252107 Msa0965020:CDS 35.0%
GGCTGAAATATCGAAAATAC+AGG + chr6_3:92252115-92252134 Msa0965020:CDS 35.0%
TCTCAGTGAATAATGTAGGT+AGG + chr6_3:92252193-92252212 Msa0965020:intron 35.0%
TTTCTGGATGAATAGCTTCT+TGG + chr6_3:92252448-92252467 Msa0965020:intron 35.0%
TTCTGGATGAATAGCTTCTT+GGG + chr6_3:92252449-92252468 Msa0965020:intron 35.0%
CATTGGGAATTGATCTTATC+CGG - chr6_3:92252545-92252564 None:intergenic 35.0%
CCTATAATCAACCCTTCATT+GGG - chr6_3:92252561-92252580 None:intergenic 35.0%
TCCTATAATCAACCCTTCAT+TGG - chr6_3:92252562-92252581 None:intergenic 35.0%
TGTTACAACACTCCTTTAGA+GGG - chr6_3:92253207-92253226 None:intergenic 35.0%
ATGTTACAACACTCCTTTAG+AGG - chr6_3:92253208-92253227 None:intergenic 35.0%
AGTGTTGTAACATTGTGAGA+TGG + chr6_3:92253215-92253234 Msa0965020:intron 35.0%
!! AGTCTCTATACATGTTTTGG+AGG - chr6_3:92253297-92253316 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr6_3:92253458-92253477 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr6_3:92253457-92253476 Msa0965020:intron 35.0%
TCATCAGTGTAAGTTAGATC+TGG - chr6_3:92253489-92253508 None:intergenic 35.0%
TAAGACGAGTAAGAAGGTTA+CGG - chr6_3:92253573-92253592 None:intergenic 35.0%
TTCGAGTCAACTTATAGACT+CGG + chr6_3:92253805-92253824 Msa0965020:intron 35.0%
! TTTGCGAGTAAACTCGTTTT+GGG - chr6_3:92253852-92253871 None:intergenic 35.0%
AGCCCTTAGAATTCAAGAAT+TGG - chr6_3:92253989-92254008 None:intergenic 35.0%
! GTGAATCCTTTTATCTTCTC+TGG + chr6_3:92254009-92254028 Msa0965020:intron 35.0%
AAGAGACCAGAGAAGATAAA+AGG - chr6_3:92254018-92254037 None:intergenic 35.0%
TTCTCTTGTATTCACATGTC+AGG + chr6_3:92254137-92254156 Msa0965020:intron 35.0%
ACAAAAACAAAACGGAGATG+AGG - chr6_3:92254171-92254190 None:intergenic 35.0%
!!! ATCTCCGTTTTGTTTTTGTC+TGG + chr6_3:92254172-92254191 Msa0965020:intron 35.0%
AAGAGAGCAAAACAGAAAAG+AGG - chr6_3:92254228-92254247 None:intergenic 35.0%
!! TTTGGCTCTTTGTTTCATTC+TGG + chr6_3:92254289-92254308 Msa0965020:intron 35.0%
! TAATGGATATGAAGTGACCA+AGG - chr6_3:92254445-92254464 None:intergenic 35.0%
TCTGATGTATGCACCTATAT+TGG + chr6_3:92254489-92254508 Msa0965020:intron 35.0%
CTCACAGTAGAATCCAATAT+AGG - chr6_3:92254505-92254524 None:intergenic 35.0%
TCAATAAAACCATTAAGGGG+AGG - chr6_3:92254618-92254637 None:intergenic 35.0%
GATTGTGCCAATGAAATTGT+TGG - chr6_3:92254676-92254695 None:intergenic 35.0%
CTTCAATTCAATGGACGACA+TGG + chr6_3:92251068-92251087 Msa0965020:exon 40.0%
!!! GTAAAGGGTACCCTTTTGAT+GGG - chr6_3:92251110-92251129 None:intergenic 40.0%
! TAGGGTTTTTGCGTCGTAAA+GGG - chr6_3:92251125-92251144 None:intergenic 40.0%
! TTAGGGTTTTTGCGTCGTAA+AGG - chr6_3:92251126-92251145 None:intergenic 40.0%
!! GGGTGTTTTTGACGAAGATT+AGG - chr6_3:92251144-92251163 None:intergenic 40.0%
AACGTAGATGAAGACGGAAT+TGG + chr6_3:92251246-92251265 Msa0965020:CDS 40.0%
GATGAAGACGGAATTGGAAA+TGG + chr6_3:92251252-92251271 Msa0965020:CDS 40.0%
GGAATTGGAAATGGGTATGT+TGG + chr6_3:92251261-92251280 Msa0965020:CDS 40.0%
ATTATGAATTGTTGCCGCCA+TGG + chr6_3:92251379-92251398 Msa0965020:CDS 40.0%
TTATGAATTGTTGCCGCCAT+GGG + chr6_3:92251380-92251399 Msa0965020:CDS 40.0%
! GAGGAATAGTTTGAGATCAG+AGG + chr6_3:92251536-92251555 Msa0965020:CDS 40.0%
AGTTGCTGAGAAAGTTTCTG+AGG + chr6_3:92251569-92251588 Msa0965020:CDS 40.0%
CTGAGGAGTTGAAAGTTGAA+AGG + chr6_3:92251586-92251605 Msa0965020:CDS 40.0%
! GTGTAGGAGTGTATTGGATA+AGG + chr6_3:92251620-92251639 Msa0965020:CDS 40.0%
GTGTATTGGATAAGGTGAAG+AGG + chr6_3:92251628-92251647 Msa0965020:CDS 40.0%
!! TTGCTTGTGGTGTTGATTCA+GGG + chr6_3:92251772-92251791 Msa0965020:CDS 40.0%
CGACCTATTCAAATAAACCC+TGG - chr6_3:92251817-92251836 None:intergenic 40.0%
! CGAATGGATTTGATGAGATG+AGG + chr6_3:92251835-92251854 Msa0965020:CDS 40.0%
! TTCTGAGGATGATGATGATG+AGG + chr6_3:92251881-92251900 Msa0965020:CDS 40.0%
! GATGAGGATGAGGATTTTGA+TGG + chr6_3:92251897-92251916 Msa0965020:CDS 40.0%
TACTAAGAGGCAACAGATGA+TGG + chr6_3:92252019-92252038 Msa0965020:CDS 40.0%
! GTTGCAGAAGAAGCAGATTT+TGG + chr6_3:92252082-92252101 Msa0965020:CDS 40.0%
ATGTAGGTAGGTGTGTATGT+TGG + chr6_3:92252205-92252224 Msa0965020:intron 40.0%
TAGCTTCTTGGGACTTATCT+TGG + chr6_3:92252460-92252479 Msa0965020:intron 40.0%
! CCCAATGAAGGGTTGATTAT+AGG + chr6_3:92252558-92252577 Msa0965020:intron 40.0%
TCCACGCTTTCCTTATCAAT+GGG + chr6_3:92252681-92252700 Msa0965020:intron 40.0%
TTCCTTATCAATGGGGTAGA+TGG + chr6_3:92252689-92252708 Msa0965020:intron 40.0%
AACCATCTACCCCATTGATA+AGG - chr6_3:92252694-92252713 None:intergenic 40.0%
ACACGAATTGTCAGATCACT+TGG + chr6_3:92252750-92252769 Msa0965020:intron 40.0%
TTGAGTGTAGTACAGACTCA+AGG + chr6_3:92252836-92252855 Msa0965020:intron 40.0%
TTCATGCTTATCCCAGTATC+TGG + chr6_3:92252879-92252898 Msa0965020:intron 40.0%
! TTTTGACCTAGAGATGACAC+AGG - chr6_3:92253153-92253172 None:intergenic 40.0%
TGTGTCATCTCTAGGTCAAA+AGG + chr6_3:92253152-92253171 Msa0965020:intron 40.0%
ACAACCGTACTATTACACAG+AGG + chr6_3:92253177-92253196 Msa0965020:intron 40.0%
AGAGCCTCTGTGTAATAGTA+CGG - chr6_3:92253184-92253203 None:intergenic 40.0%
GACTATCTATCACTAGAAGC+TGG + chr6_3:92253325-92253344 Msa0965020:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr6_3:92253463-92253482 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr6_3:92253464-92253483 None:intergenic 40.0%
CTAAGGTAAGACGAGTAAGA+AGG - chr6_3:92253579-92253598 None:intergenic 40.0%
! ACTCTTCCTTCTTTTCATCC+CGG + chr6_3:92253721-92253740 Msa0965020:intron 40.0%
TTACTCGTGAACTGCAATTC+CGG - chr6_3:92253743-92253762 None:intergenic 40.0%
! GTTTGCGAGTAAACTCGTTT+TGG - chr6_3:92253853-92253872 None:intergenic 40.0%
TTTCTAATGTGGGCAGACTT+GGG + chr6_3:92253881-92253900 Msa0965020:intron 40.0%
CAACATACAGTTCAACTCGT+CGG - chr6_3:92254099-92254118 None:intergenic 40.0%
! GCTCTTTGTTTCATTCTGGT+TGG + chr6_3:92254293-92254312 Msa0965020:intron 40.0%
GATACACTACAGCAAGTCTT+TGG - chr6_3:92254401-92254420 None:intergenic 40.0%
GATGTTGCAAATTCATGGGT+AGG + chr6_3:92254465-92254484 Msa0965020:intron 40.0%
ATAGCAGAGTTGTTATCTGG+AGG - chr6_3:92254552-92254571 None:intergenic 40.0%
GCAATAGCAGAGTTGTTATC+TGG - chr6_3:92254555-92254574 None:intergenic 40.0%
TATGAGTCGAGTCTACAGTA+CGG + chr6_3:92255074-92255093 Msa0965020:intron 40.0%
TCAGACTTGAGAGTCTATGT+AGG - chr6_3:92255112-92255131 None:intergenic 40.0%
AGTCAGAGAACACAAATGAG+TGG - chr6_3:92255331-92255350 None:intergenic 40.0%
TCATTTGTGTTCTCTGACTG+TGG + chr6_3:92255332-92255351 Msa0965020:three_prime_UTR 40.0%
!!! CGTAAAGGGTACCCTTTTGA+TGG - chr6_3:92251111-92251130 None:intergenic 45.0%
TATGAATTGTTGCCGCCATG+GGG + chr6_3:92251381-92251400 Msa0965020:CDS 45.0%
GAAAATTTACCACTGCCCCA+TGG - chr6_3:92251399-92251418 None:intergenic 45.0%
AAAGGAATGTGGCACAGTGT+AGG + chr6_3:92251604-92251623 Msa0965020:CDS 45.0%
! CAAGAGTATGGACTTGCTTG+TGG + chr6_3:92251759-92251778 Msa0965020:CDS 45.0%
!! CTTGCTTGTGGTGTTGATTC+AGG + chr6_3:92251771-92251790 Msa0965020:CDS 45.0%
!! TGCTTGTGGTGTTGATTCAG+GGG + chr6_3:92251773-92251792 Msa0965020:CDS 45.0%
! GGATGATGATGATGAGGATG+AGG + chr6_3:92251887-92251906 Msa0965020:CDS 45.0%
!!! TGAGGATTTTGATGGCGATG+AGG + chr6_3:92251905-92251924 Msa0965020:CDS 45.0%
CGATGAGGATGATGTCGATA+GGG + chr6_3:92251920-92251939 Msa0965020:CDS 45.0%
! GGAGGCTTCGTATAGGATTT+TGG + chr6_3:92251950-92251969 Msa0965020:CDS 45.0%
!! ACAGATGATGGAGTTGGAGA+AGG + chr6_3:92252031-92252050 Msa0965020:CDS 45.0%
GAAGCAGTAGATGATGCTGA+TGG + chr6_3:92252137-92252156 Msa0965020:CDS 45.0%
ACCACACGTGTGAGTATTTC+TGG + chr6_3:92252432-92252451 Msa0965020:intron 45.0%
TCCAGAAATACTCACACGTG+TGG - chr6_3:92252436-92252455 None:intergenic 45.0%
AAAGCGTGGACAAGATAGAG+AGG - chr6_3:92252671-92252690 None:intergenic 45.0%
GTCCACGCTTTCCTTATCAA+TGG + chr6_3:92252680-92252699 Msa0965020:intron 45.0%
CCACGCTTTCCTTATCAATG+GGG + chr6_3:92252682-92252701 Msa0965020:intron 45.0%
CCTGCTTCAATCCAGATACT+GGG - chr6_3:92252893-92252912 None:intergenic 45.0%
TCCTGCTTCAATCCAGATAC+TGG - chr6_3:92252894-92252913 None:intergenic 45.0%
ACTATTGAAATAGGCGACCC+TGG + chr6_3:92253045-92253064 Msa0965020:intron 45.0%
TAGGTTCCTGTGTCATCTCT+AGG + chr6_3:92253144-92253163 Msa0965020:intron 45.0%
CACTGAAAAAAAGGGCAACC+CGG + chr6_3:92253366-92253385 Msa0965020:intron 45.0%
CGTACAATACACCAAGTGGT+GGG - chr6_3:92253432-92253451 None:intergenic 45.0%
GCAATTCCGGGATGAAAAGA+AGG - chr6_3:92253730-92253749 None:intergenic 45.0%
TACTCGTGAACTGCAATTCC+GGG - chr6_3:92253742-92253761 None:intergenic 45.0%
GGTAGCTGGACTTGTAAACT+TGG - chr6_3:92253831-92253850 None:intergenic 45.0%
!! GTAAACTCGTTTTGGGTAGC+TGG - chr6_3:92253845-92253864 None:intergenic 45.0%
CTTTCTAATGTGGGCAGACT+TGG + chr6_3:92253880-92253899 Msa0965020:intron 45.0%
GAGTAACAGCGTCACAAAGA+TGG - chr6_3:92254053-92254072 None:intergenic 45.0%
TATTGCTTCCTACGTTAGGG+TGG + chr6_3:92254349-92254368 Msa0965020:intron 45.0%
AGGGTGGCTAGTAGAATCTT+TGG + chr6_3:92254365-92254384 Msa0965020:intron 45.0%
GGATTCTCGTTGTTATCTGG+AGG - chr6_3:92254531-92254550 None:intergenic 45.0%
GGAGGATTCTCGTTGTTATC+TGG - chr6_3:92254534-92254553 None:intergenic 45.0%
AGTCTATGTAGGCTCGAGAA+GGG - chr6_3:92255101-92255120 None:intergenic 45.0%
!! CTGAAAGAGTGCACCAGTTT+TGG + chr6_3:92255274-92255293 Msa0965020:three_prime_UTR 45.0%
!! AAAGAGTGCACCAGTTTTGG+AGG + chr6_3:92255277-92255296 Msa0965020:three_prime_UTR 45.0%
TGCAATCTTGCCTCCAAAAC+TGG - chr6_3:92255290-92255309 None:intergenic 45.0%
AAAATGCGAAGTGGCCCTAG+TGG + chr6_3:92251324-92251343 Msa0965020:CDS 50.0%
AATTTACCACTGCCCCATGG+CGG - chr6_3:92251396-92251415 None:intergenic 50.0%
TCGAGTTCTGTCCATTCCTC+TGG + chr6_3:92251441-92251460 Msa0965020:CDS 50.0%
CGAGTTCTGTCCATTCCTCT+GGG + chr6_3:92251442-92251461 Msa0965020:CDS 50.0%
TTCTGTCCATTCCTCTGGGT+CGG + chr6_3:92251446-92251465 Msa0965020:CDS 50.0%
! GGCACAGTGTAGGAGTGTAT+TGG + chr6_3:92251614-92251633 Msa0965020:CDS 50.0%
TCGAGTGCGAGACAAGAGTA+TGG + chr6_3:92251747-92251766 Msa0965020:CDS 50.0%
GATGAGATGAGGGATAGTCC+TGG + chr6_3:92251846-92251865 Msa0965020:CDS 50.0%
TCAGAACTCTCAGACTCACC+AGG - chr6_3:92251867-92251886 None:intergenic 50.0%
TGGTGAGTCTGAGAGTTCTG+AGG + chr6_3:92251866-92251885 Msa0965020:CDS 50.0%
GCGATGAGGATGATGTCGAT+AGG + chr6_3:92251919-92251938 Msa0965020:CDS 50.0%
GGATGATGTCGATAGGGAAG+AGG + chr6_3:92251926-92251945 Msa0965020:CDS 50.0%
TGATGTCGATAGGGAAGAGG+AGG + chr6_3:92251929-92251948 Msa0965020:CDS 50.0%
AAGAGGAGGAGGCTTCGTAT+AGG + chr6_3:92251943-92251962 Msa0965020:CDS 50.0%
!! GAGGCAACAGATGATGGAGT+TGG + chr6_3:92252025-92252044 Msa0965020:CDS 50.0%
TGATGGAGTTGGAGAAGGTG+AGG + chr6_3:92252036-92252055 Msa0965020:CDS 50.0%
! GCAGATTTTGGATAGGGCTC+AGG + chr6_3:92252094-92252113 Msa0965020:CDS 50.0%
! TGATGCTGATGGTGACGATG+AGG + chr6_3:92252148-92252167 Msa0965020:CDS 50.0%
CCCCATTGATAAGGAAAGCG+TGG - chr6_3:92252685-92252704 None:intergenic 50.0%
CCCAGTATCTGGATTGAAGC+AGG + chr6_3:92252890-92252909 Msa0965020:intron 50.0%
ATTGAAATAGGCGACCCTGG+TGG + chr6_3:92253048-92253067 Msa0965020:intron 50.0%
TTGAAATAGGCGACCCTGGT+GGG + chr6_3:92253049-92253068 Msa0965020:intron 50.0%
TCTAGAGACCAGGGTCTAGA+GGG + chr6_3:92253073-92253092 Msa0965020:intron 50.0%
!! GGGGAGGCTGTTTCTTTGAT+AGG + chr6_3:92253125-92253144 Msa0965020:intron 50.0%
GCGTACAATACACCAAGTGG+TGG - chr6_3:92253433-92253452 None:intergenic 50.0%
GCTGCGTACAATACACCAAG+TGG - chr6_3:92253436-92253455 None:intergenic 50.0%
AACTCGTCGGAGACTAATGC+TGG - chr6_3:92254086-92254105 None:intergenic 50.0%
TCTACTAGCCACCCTAACGT+AGG - chr6_3:92254360-92254379 None:intergenic 50.0%
GAGCGCTTAGTTGGAAACCA+TGG - chr6_3:92254596-92254615 None:intergenic 50.0%
GAGTCTATGTAGGCTCGAGA+AGG - chr6_3:92255102-92255121 None:intergenic 50.0%
CACCACCAAAACCGCCACTA+GGG - chr6_3:92251341-92251360 None:intergenic 55.0%
ATTCCTCCGACCCAGAGGAA+TGG - chr6_3:92251455-92251474 None:intergenic 55.0%
ATTCCTCTGGGTCGGAGGAA+TGG + chr6_3:92251454-92251473 Msa0965020:CDS 55.0%
TGTCGATAGGGAAGAGGAGG+AGG + chr6_3:92251932-92251951 Msa0965020:CDS 55.0%
GGAGTTGGAGAAGGTGAGGT+TGG + chr6_3:92252040-92252059 Msa0965020:CDS 55.0%
TGAAATAGGCGACCCTGGTG+GGG + chr6_3:92253050-92253069 Msa0965020:intron 55.0%
GTCTAGAGACCAGGGTCTAG+AGG + chr6_3:92253072-92253091 Msa0965020:intron 55.0%
TGCATCTACCCTCTAGACCC+TGG - chr6_3:92253084-92253103 None:intergenic 55.0%
GATGCACGCAGCCTTAACCT+CGG + chr6_3:92253098-92253117 Msa0965020:intron 55.0%
GCAGCCTTAACCTCGGAAGT+GGG + chr6_3:92253105-92253124 Msa0965020:intron 55.0%
CAGCCTTAACCTCGGAAGTG+GGG + chr6_3:92253106-92253125 Msa0965020:intron 55.0%
CACAGAGGCTCTCCCTCTAA+AGG + chr6_3:92253192-92253211 Msa0965020:intron 55.0%
GTGATGCAGCACTGCGTTTC+GGG - chr6_3:92253967-92253986 None:intergenic 55.0%
GGTGATGCAGCACTGCGTTT+CGG - chr6_3:92253968-92253987 None:intergenic 55.0%
!! TAAGGGGAGGAGCGCTTAGT+TGG - chr6_3:92254605-92254624 None:intergenic 55.0%
CTAAGCGCTCCTCCCCTTAA+TGG + chr6_3:92254606-92254625 Msa0965020:intron 55.0%
ATGCGAAGTGGCCCTAGTGG+CGG + chr6_3:92251327-92251346 Msa0965020:CDS 60.0%
! AGTGGCCCTAGTGGCGGTTT+TGG + chr6_3:92251333-92251352 Msa0965020:CDS 60.0%
CCACCACCAAAACCGCCACT+AGG - chr6_3:92251342-92251361 None:intergenic 60.0%
!! CCTAGTGGCGGTTTTGGTGG+TGG + chr6_3:92251339-92251358 Msa0965020:CDS 60.0%
!!! AGTGGCGGTTTTGGTGGTGG+TGG + chr6_3:92251342-92251361 Msa0965020:CDS 60.0%
TGTCCATTCCTCTGGGTCGG+AGG + chr6_3:92251449-92251468 Msa0965020:CDS 60.0%
TGTCCATTCCTCCGACCCAG+AGG - chr6_3:92251460-92251479 None:intergenic 60.0%
CTGGTCTCTAGACCCCACCA+GGG - chr6_3:92253065-92253084 None:intergenic 60.0%
CTGGTGGGGTCTAGAGACCA+GGG + chr6_3:92253064-92253083 Msa0965020:intron 60.0%
CGCAGCCTTAACCTCGGAAG+TGG + chr6_3:92253104-92253123 Msa0965020:intron 60.0%
CCTCCCCACTTCCGAGGTTA+AGG - chr6_3:92253112-92253131 None:intergenic 60.0%
CCTTAACCTCGGAAGTGGGG+AGG + chr6_3:92253109-92253128 Msa0965020:intron 60.0%
AAACAGCCTCCCCACTTCCG+AGG - chr6_3:92253118-92253137 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr6_3:92253388-92253407 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr6_3:92253392-92253411 Msa0965020:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr6_3:92253393-92253412 Msa0965020:intron 60.0%
!! GGCCCTAGTGGCGGTTTTGG+TGG + chr6_3:92251336-92251355 Msa0965020:CDS 65.0%
!!! GGCGGTTTTGGTGGTGGTGG+TGG + chr6_3:92251345-92251364 Msa0965020:CDS 65.0%
TTGTTGCCGCCATGGGGCAG+TGG + chr6_3:92251387-92251406 Msa0965020:CDS 65.0%
CCTGGTCTCTAGACCCCACC+AGG - chr6_3:92253066-92253085 None:intergenic 65.0%
CCTGGTGGGGTCTAGAGACC+AGG + chr6_3:92253063-92253082 Msa0965020:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr6_3:92253387-92253406 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr6_3:92253404-92253423 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr6_3:92253405-92253424 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr6_3:92253404-92253423 Msa0965020:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr6_3:92253405-92253424 Msa0965020:intron 65.0%
! CAAGTGGTGGGACCCCTTCC+CGG - chr6_3:92253420-92253439 None:intergenic 65.0%
GCTCCCGCATACGCAGGGTC+CGG + chr6_3:92253398-92253417 Msa0965020:intron 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr6_3:92253399-92253418 Msa0965020:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr6_3:92253403-92253422 Msa0965020:intron 70.0%
CGGGAAGGGGTCCCACCACT+TGG + chr6_3:92253418-92253437 Msa0965020:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 92250909 92255475 92250909 ID=Msa0965020;Name=Msa0965020
chr6_3 mRNA 92250909 92255475 92250909 ID=Msa0965020-mRNA-1;Parent=Msa0965020;Name=Msa0965020-mRNA-1;_AED=0.28;_eAED=0.28;_QI=169|0|0.5|1|0|0.5|2|234|375
chr6_3 exon 92250909 92252205 92250909 ID=Msa0965020-mRNA-1:exon:16726;Parent=Msa0965020-mRNA-1
chr6_3 exon 92255242 92255475 92255242 ID=Msa0965020-mRNA-1:exon:16727;Parent=Msa0965020-mRNA-1
chr6_3 five_prime_UTR 92250909 92251077 92250909 ID=Msa0965020-mRNA-1:five_prime_utr;Parent=Msa0965020-mRNA-1
chr6_3 CDS 92251078 92252205 92251078 ID=Msa0965020-mRNA-1:cds;Parent=Msa0965020-mRNA-1
chr6_3 three_prime_UTR 92255242 92255475 92255242 ID=Msa0965020-mRNA-1:three_prime_utr;Parent=Msa0965020-mRNA-1
Gene Sequence

>Msa0965020

ATGGACGACATGGAAGACGATTCAAGATACCCATCAAAAGGGTACCCTTTACGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACTTACAATATCAACGCTACAACGATCGCGAAGAAGATTTCGAAGACGATGAACCCGAAGAATTCGATGATTATAACGTAGATGAAGACGGAATTGGAAATGGGTATGTTGGAAATTTTGAAGAAAATGTTGGGTTTGTTAGAAAAAAGAGAAAAATGCGAAGTGGCCCTAGTGGCGGTTTTGGTGGTGGTGGTGGTTCTATGTCGAATTATGAATTGTTGCCGCCATGGGGCAGTGGTAAATTTTCGAACTTTAATCGTGGTGGAAGTTCGAGTTCTGTCCATTCCTCTGGGTCGGAGGAATGGACAGAACACGCGACGTTTGTGTTGTTAGAGATATGGGGTGAGAAGTTTCTTCAAATTGGGAGGAATAGTTTGAGATCAGAGGAATGGCATGAAGTTGCTGAGAAAGTTTCTGAGGAGTTGAAAGTTGAAAGGAATGTGGCACAGTGTAGGAGTGTATTGGATAAGGTGAAGAGGAGATATAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTGGGTTTAAGTTCTTGTAAATGGCCATTTTTCAAGAAGATGGATATGTTGATGTCGTCGAGTGCGAGACAAGAGTATGGACTTGCTTGTGGTGTTGATTCAGGGGAGTATGTGTTTATGAATACCAGGGTTTATTTGAATAGGTCGAATGGATTTGATGAGATGAGGGATAGTCCTGGTGAGTCTGAGAGTTCTGAGGATGATGATGATGAGGATGAGGATTTTGATGGCGATGAGGATGATGTCGATAGGGAAGAGGAGGAGGCTTCGTATAGGATTTTGGCTGATTCGATTCAAAAATTTGGGAATATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAGTTGGAGAAGGTGAGGTTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGATAGGGCTCAGGCTGAAATATCGAAAATACAGGAAGCAGTAGATGATGCTGATGGTGACGATGAGGACACAGACACTTCTGCTGATAATCTCAGTGAATAA

Protein sequence

>Msa0965020

MDDMEDDSRYPSKGYPLRRKNPNLRQKHPIRNLQYQRYNDREEDFEDDEPEEFDDYNVDEDGIGNGYVGNFEENVGFVRKKRKMRSGPSGGFGGGGGSMSNYELLPPWGSGKFSNFNRGGSSSSVHSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVAEKVSEELKVERNVAQCRSVLDKVKRRYKKEKSRMDEMGLGLSSCKWPFFKKMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESSEDDDDEDEDFDGDEDDVDREEEEASYRILADSIQKFGNIYEKIENTKRQQMMELEKVRLDFNRELELQKKQILDRAQAEISKIQEAVDDADGDDEDTDTSADNLSE*