AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142500 MtrunA17_Chr8g0365921 95.872 218 9 0 1 218 1 218 2.72e-159 439
Msa0142500 MtrunA17_Chr1g0193061 68.182 220 65 4 1 216 1 219 5.30e-106 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142500 AT1G23440.1 69.725 218 65 1 1 218 1 217 2.32e-113 323
Msa0142500 AT1G23440.3 69.725 218 65 1 1 218 1 217 2.32e-113 323
Msa0142500 AT1G56700.1 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa0142500 AT1G56700.2 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa0142500 AT1G56700.4 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa0142500 AT1G56700.3 60.000 190 74 2 30 218 1 189 3.53e-82 243
Msa0142500 AT1G23440.2 62.222 90 34 0 1 90 1 90 6.47e-35 119

Find 92 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATAAATTATTTGTTAT+TGG 0.120150 1_4:+1450958 Msa0142500:three_prime_UTR
TTCATCGATTCTCGAAAATA+AGG 0.171114 1_4:-1450636 None:intergenic
ATAATCTCTGTAGGGTTTAT+TGG 0.189118 1_4:-1447988 None:intergenic
AATCTTGAAATCCTTGAAAA+AGG 0.203646 1_4:+1450493 Msa0142500:CDS
ATTAAGACCTTAACCATTCT+TGG 0.205826 1_4:-1451352 None:intergenic
AAAATTACAATTCATGTAAC+TGG 0.219675 1_4:+1447943 Msa0142500:CDS
AATTCATGAATGTCTGTTCT+TGG 0.239447 1_4:+1450880 Msa0142500:three_prime_UTR
GTCGGTAAAGTTAGCATATA+TGG 0.241397 1_4:+1451286 Msa0142500:three_prime_UTR
AATGGTTAAGGTCTTAATTA+AGG 0.264670 1_4:+1451357 Msa0142500:three_prime_UTR
TTCCGCTGTTCTGATGAATT+AGG 0.270479 1_4:+1449358 Msa0142500:CDS
GAGATTTACAGCCTCTCTTT+TGG 0.294280 1_4:+1450670 Msa0142500:CDS
TCATGGCATTCACATGTAAA+AGG 0.308896 1_4:-1451250 None:intergenic
AGAGTAATTCAAATGTTGTT+TGG 0.313563 1_4:+1448160 Msa0142500:CDS
TTGGAAGGAAGTGGAATATA+AGG 0.343178 1_4:+1451215 Msa0142500:three_prime_UTR
TGTTTGACTCTTCTGCTGTT+TGG 0.356786 1_4:-1447392 None:intergenic
CCTCCATCCTCAAGGACTAT+TGG 0.368174 1_4:-1449540 None:intergenic
CTTCCAGTTGGTGTTACTCT+TGG 0.368291 1_4:+1448048 Msa0142500:CDS
AAGAATTCAGAATTCAGAAA+TGG 0.372313 1_4:+1447903 Msa0142500:exon
GACTGCCATGTCCTGTCATC+TGG 0.374311 1_4:+1450744 Msa0142500:three_prime_UTR
GAGTAATTCAAATGTTGTTT+GGG 0.388882 1_4:+1448161 Msa0142500:CDS
TCATCGATTCTCGAAAATAA+GGG 0.399792 1_4:-1450635 None:intergenic
TTCCTTGGTGTGCTTAAGGT+TGG 0.406677 1_4:-1451025 None:intergenic
TTATCTTCCAAGAATGGTTA+AGG 0.412459 1_4:+1451345 Msa0142500:three_prime_UTR
AAATAAATAAATAGTATATG+TGG 0.418546 1_4:+1451319 Msa0142500:three_prime_UTR
ATGTGTATTACCACTCTCTT+CGG 0.421496 1_4:+1450570 Msa0142500:CDS
TACATGTGAATGCCATGATA+AGG 0.423191 1_4:+1451255 Msa0142500:three_prime_UTR
ACTGTTGAGTCAACCTTGTA+TGG 0.423818 1_4:+1451113 Msa0142500:three_prime_UTR
ATTTATGCTTCAGCTTCACT+TGG 0.429836 1_4:+1449276 Msa0142500:intron
TTTATGCTTCAGCTTCACTT+GGG 0.439902 1_4:+1449277 Msa0142500:intron
CTTCCAAGAGTAACACCAAC+TGG 0.451339 1_4:-1448051 None:intergenic
ACTGGGTTTAAGAAGTTTCA+AGG 0.460584 1_4:+1447961 Msa0142500:CDS
TTTCTTCAGTTGGAAGGAAG+TGG 0.461320 1_4:+1451206 Msa0142500:three_prime_UTR
TTATTAACAATAATCTCTGT+AGG 0.465678 1_4:-1447997 None:intergenic
TGGGAATTATCTTCCAAGAA+TGG 0.466260 1_4:+1451339 Msa0142500:three_prime_UTR
GATTTCAAGATTGCATCAAC+AGG 0.476405 1_4:-1450482 None:intergenic
CTGTTTGGATAAAATGCCAC+TGG 0.477189 1_4:-1447377 None:intergenic
AGAATTCAGAATTCAGAAAT+GGG 0.477928 1_4:+1447904 Msa0142500:exon
CATGATAAGGTTATAGTTGT+CGG 0.480433 1_4:+1451268 Msa0142500:three_prime_UTR
ATTTGCTGCCAACCGCTCAA+TGG 0.484329 1_4:-1449326 None:intergenic
AAACTGTACTCAACCATACA+AGG 0.489075 1_4:-1451126 None:intergenic
TGCACTATTCTTGACGTGGC+TGG 0.492051 1_4:+1448075 Msa0142500:CDS
AAGAAGAAAGCAATGCTTTG+CGG 0.495683 1_4:-1447421 None:intergenic
AGGGATTATGTTGAAAAGAA+AGG 0.499009 1_4:+1448024 Msa0142500:CDS
CTCGTGTGGTTAGTGACAGC+GGG 0.506827 1_4:-1447317 None:intergenic
GGAATCTGTTGTGTCGAAAA+CGG 0.508223 1_4:+1448131 Msa0142500:CDS
AAGGTTTGCCATTGAGCGGT+TGG 0.517019 1_4:+1449318 Msa0142500:CDS
TTATGCTTCAGCTTCACTTG+GGG 0.520510 1_4:+1449278 Msa0142500:intron
TTTCGACACAACAGATTCCA+TGG 0.522218 1_4:-1448127 None:intergenic
AATAAATAAATAGTATATGT+GGG 0.522277 1_4:+1451320 Msa0142500:three_prime_UTR
TCTTCGGTTCGCAGAACAGA+AGG 0.529048 1_4:+1450586 Msa0142500:CDS
AATTCAGAAATGGGATCTGA+AGG 0.532059 1_4:+1447913 Msa0142500:exon
ATTCTTGACGTGGCTGGTGA+TGG 0.533255 1_4:+1448081 Msa0142500:CDS
CGACAACTATAACCTTATCA+TGG 0.536591 1_4:-1451267 None:intergenic
TACATACACAACCAGATGAC+AGG 0.536660 1_4:-1450755 None:intergenic
CTGCAAGGTTTGCCATTGAG+CGG 0.540890 1_4:+1449314 Msa0142500:CDS
AGATTATTGTTAATAATCTG+AGG 0.547702 1_4:+1448004 Msa0142500:CDS
TATTAACAATAATCTCTGTA+GGG 0.553359 1_4:-1447996 None:intergenic
AAATTACAATTCATGTAACT+GGG 0.560230 1_4:+1447944 Msa0142500:CDS
GAGAAATTCCTCCATCCTCA+AGG 0.563765 1_4:-1449548 None:intergenic
TATGCTTCAGCTTCACTTGG+GGG 0.574889 1_4:+1449279 Msa0142500:intron
CCACAGTCGTGTTTCTCGTG+TGG 0.577249 1_4:-1447331 None:intergenic
GTCACACTTCGTGAATTCCC+AGG 0.577319 1_4:+1447514 Msa0142500:five_prime_UTR
TCCTCAGCTTTATCAGACCA+TGG 0.578488 1_4:+1448110 Msa0142500:CDS
GATTATTGTTAATAATCTGA+GGG 0.580790 1_4:+1448005 Msa0142500:CDS
GAAAAGAAAGGTCTTCCAGT+TGG 0.590107 1_4:+1448036 Msa0142500:CDS
AGGAATTTCTCGAACGAGAG+AGG 0.595662 1_4:+1449560 Msa0142500:CDS
GTACCAATAGTCCTTGAGGA+TGG 0.605270 1_4:+1449537 Msa0142500:CDS
GATTGCACAGATATATATGC+TGG 0.605384 1_4:+1450902 Msa0142500:three_prime_UTR
TTATTAACATGCAGAAGCAA+TGG 0.607143 1_4:-1450696 None:intergenic
TCTCGTGTGGTTAGTGACAG+CGG 0.615212 1_4:-1447318 None:intergenic
CCAATAGTCCTTGAGGATGG+AGG 0.618477 1_4:+1449540 Msa0142500:CDS
TTATGACGTGATGATATCAC+AGG 0.624899 1_4:+1450523 Msa0142500:CDS
GGGTGAACAGTGGAGCTGCA+AGG 0.626140 1_4:+1449299 Msa0142500:CDS
GCAAGTACCAATAGTCCTTG+AGG 0.628947 1_4:+1449533 Msa0142500:intron
ATTCAGAAATGGGATCTGAA+GGG 0.630200 1_4:+1447914 Msa0142500:exon
CTTCGGTTCGCAGAACAGAA+GGG 0.630794 1_4:+1450587 Msa0142500:CDS
GCTGTTCTGATGAATTAGGA+TGG 0.630988 1_4:+1449362 Msa0142500:CDS
CACAACCAGATGACAGGACA+TGG 0.632247 1_4:-1450749 None:intergenic
AATTGATTGAATTGTATGCA+AGG 0.637455 1_4:+1450722 Msa0142500:three_prime_UTR
AGCAATGGCCTCCAAAAGAG+AGG 0.639282 1_4:-1450681 None:intergenic
AAGTTGCACTATTCTTGACG+TGG 0.643245 1_4:+1448071 Msa0142500:CDS
TCCATGGTCTGATAAAGCTG+AGG 0.663058 1_4:-1448111 None:intergenic
TGTTTGGATAAAATGCCACT+GGG 0.663298 1_4:-1447376 None:intergenic
GGCTATATTTGTGTATGACT+AGG 0.670813 1_4:+1451167 Msa0142500:three_prime_UTR
ATATTTGTGTATGACTAGGA+TGG 0.674241 1_4:+1451171 Msa0142500:three_prime_UTR
ATCCTAATTCATCAGAACAG+CGG 0.674516 1_4:-1449360 None:intergenic
TGCACAGATATATATGCTGG+TGG 0.698158 1_4:+1450905 Msa0142500:three_prime_UTR
GTTCTGCGAACCGAAGAGAG+TGG 0.713903 1_4:-1450580 None:intergenic
GACCAACCTTAAGCACACCA+AGG 0.715654 1_4:+1451023 Msa0142500:three_prime_UTR
GTGATGATATCACAGGACGC+AGG 0.742675 1_4:+1450530 Msa0142500:CDS
CCACACGAGAAACACGACTG+TGG 0.747428 1_4:+1447331 Msa0142500:five_prime_UTR
GTTTGGATAAAATGCCACTG+GGG 0.838992 1_4:-1447375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATACTACAAAA+AGG - chr1_4:1447454-1447473 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG - chr1_4:1447638-1447657 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG - chr1_4:1448574-1448593 None:intergenic 10.0%
!! TTCTATTATAAAAATAATAC+AGG - chr1_4:1449245-1449264 None:intergenic 10.0%
!!! AGAAATAAATTATTTGTTAT+TGG + chr1_4:1450958-1450977 Msa0142500:three_prime_UTR 10.0%
!! AAATAAATAAATAGTATATG+TGG + chr1_4:1451319-1451338 Msa0142500:three_prime_UTR 10.0%
!! AATAAATAAATAGTATATGT+GGG + chr1_4:1451320-1451339 Msa0142500:three_prime_UTR 10.0%
!! ATAAAAATAATACTACAAAA+AGG - chr1_4:1447454-1447473 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG - chr1_4:1447638-1447657 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG - chr1_4:1448574-1448593 None:intergenic 10.0%
!! TTCTATTATAAAAATAATAC+AGG - chr1_4:1449245-1449264 None:intergenic 10.0%
!!! AGAAATAAATTATTTGTTAT+TGG + chr1_4:1450958-1450977 Msa0142500:three_prime_UTR 10.0%
!! AAATAAATAAATAGTATATG+TGG + chr1_4:1451319-1451338 Msa0142500:three_prime_UTR 10.0%
!! AATAAATAAATAGTATATGT+GGG + chr1_4:1451320-1451339 Msa0142500:three_prime_UTR 10.0%
!! TAATTTAGTGTGATAATTAT+TGG + chr1_4:1447826-1447845 Msa0142500:intron 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG + chr1_4:1447871-1447890 Msa0142500:five_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG + chr1_4:1447872-1447891 Msa0142500:five_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG + chr1_4:1448325-1448344 Msa0142500:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG + chr1_4:1448587-1448606 Msa0142500:intron 15.0%
!!! TTATCTTTTATAGATGAAAT+TGG + chr1_4:1449418-1449437 Msa0142500:intron 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG - chr1_4:1449811-1449830 None:intergenic 15.0%
!!! GTTCTTTGATTTATTTTATT+TGG + chr1_4:1450837-1450856 Msa0142500:three_prime_UTR 15.0%
!!! AATAATTTATTTCTTTTGCT+TGG - chr1_4:1450952-1450971 None:intergenic 15.0%
!!! TTTTAAACAAAACATTTGAA+TGG + chr1_4:1451146-1451165 Msa0142500:three_prime_UTR 15.0%
!! TAATTTAGTGTGATAATTAT+TGG + chr1_4:1447826-1447845 Msa0142500:intron 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG + chr1_4:1447871-1447890 Msa0142500:five_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG + chr1_4:1447872-1447891 Msa0142500:five_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG + chr1_4:1448325-1448344 Msa0142500:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG + chr1_4:1448587-1448606 Msa0142500:intron 15.0%
!!! TTATCTTTTATAGATGAAAT+TGG + chr1_4:1449418-1449437 Msa0142500:intron 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG - chr1_4:1449811-1449830 None:intergenic 15.0%
!!! GTTCTTTGATTTATTTTATT+TGG + chr1_4:1450837-1450856 Msa0142500:three_prime_UTR 15.0%
!!! AATAATTTATTTCTTTTGCT+TGG - chr1_4:1450952-1450971 None:intergenic 15.0%
!!! TTTTAAACAAAACATTTGAA+TGG + chr1_4:1451146-1451165 Msa0142500:three_prime_UTR 15.0%
!! AATTGATCAATTTAGTGAAA+AGG + chr1_4:1447716-1447735 Msa0142500:intron 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG + chr1_4:1447717-1447736 Msa0142500:intron 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG - chr1_4:1447940-1447959 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG + chr1_4:1447943-1447962 Msa0142500:CDS 20.0%
!! AAATTACAATTCATGTAACT+GGG + chr1_4:1447944-1447963 Msa0142500:CDS 20.0%
!! TATTAACAATAATCTCTGTA+GGG - chr1_4:1447999-1448018 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG - chr1_4:1448000-1448019 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG + chr1_4:1448004-1448023 Msa0142500:CDS 20.0%
!! GATTATTGTTAATAATCTGA+GGG + chr1_4:1448005-1448024 Msa0142500:CDS 20.0%
!! ATTGAATTGCATTAGAAATT+TGG + chr1_4:1448706-1448725 Msa0142500:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG - chr1_4:1448868-1448887 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG - chr1_4:1448932-1448951 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG + chr1_4:1449892-1449911 Msa0142500:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG + chr1_4:1450317-1450336 Msa0142500:intron 20.0%
!!! TGTATTTTATTTTCTTCAGT+TGG + chr1_4:1451196-1451215 Msa0142500:three_prime_UTR 20.0%
!! AATTGATCAATTTAGTGAAA+AGG + chr1_4:1447716-1447735 Msa0142500:intron 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG + chr1_4:1447717-1447736 Msa0142500:intron 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG - chr1_4:1447940-1447959 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG + chr1_4:1447943-1447962 Msa0142500:CDS 20.0%
!! AAATTACAATTCATGTAACT+GGG + chr1_4:1447944-1447963 Msa0142500:CDS 20.0%
!! TATTAACAATAATCTCTGTA+GGG - chr1_4:1447999-1448018 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG - chr1_4:1448000-1448019 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG + chr1_4:1448004-1448023 Msa0142500:CDS 20.0%
!! GATTATTGTTAATAATCTGA+GGG + chr1_4:1448005-1448024 Msa0142500:CDS 20.0%
!! ATTGAATTGCATTAGAAATT+TGG + chr1_4:1448706-1448725 Msa0142500:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG - chr1_4:1448868-1448887 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG - chr1_4:1448932-1448951 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG + chr1_4:1449892-1449911 Msa0142500:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG + chr1_4:1450317-1450336 Msa0142500:intron 20.0%
!!! TGTATTTTATTTTCTTCAGT+TGG + chr1_4:1451196-1451215 Msa0142500:three_prime_UTR 20.0%
! TTAATTAAACATAAGGTAGC+AGG - chr1_4:1447631-1447650 None:intergenic 25.0%
! AAGAATTCAGAATTCAGAAA+TGG + chr1_4:1447903-1447922 Msa0142500:exon 25.0%
! AGAATTCAGAATTCAGAAAT+GGG + chr1_4:1447904-1447923 Msa0142500:exon 25.0%
! AGAGTAATTCAAATGTTGTT+TGG + chr1_4:1448160-1448179 Msa0142500:CDS 25.0%
!! GAGTAATTCAAATGTTGTTT+GGG + chr1_4:1448161-1448180 Msa0142500:CDS 25.0%
! GTTGAAAACAGCTTATAAAT+TGG - chr1_4:1448255-1448274 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG - chr1_4:1448506-1448525 None:intergenic 25.0%
! ACTTAGAAACAGAAAGAAAA+CGG - chr1_4:1448895-1448914 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG + chr1_4:1448940-1448959 Msa0142500:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG + chr1_4:1448941-1448960 Msa0142500:intron 25.0%
! TACAAAATGTTGTTAAACAG+TGG - chr1_4:1449051-1449070 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG - chr1_4:1449142-1449161 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG + chr1_4:1449144-1449163 Msa0142500:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG + chr1_4:1449145-1449164 Msa0142500:intron 25.0%
! AAATTGGAAAAAAAGCTACA+AGG + chr1_4:1449434-1449453 Msa0142500:intron 25.0%
! CAAATCTTCACCTTATAAAT+TGG + chr1_4:1449705-1449724 Msa0142500:intron 25.0%
! AACGTTAATGCTGTATTAAT+TGG + chr1_4:1449753-1449772 Msa0142500:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG + chr1_4:1449826-1449845 Msa0142500:intron 25.0%
! TAGAGAAAGAACAAATCAAT+AGG + chr1_4:1449859-1449878 Msa0142500:intron 25.0%
! AATTTGCAACATCAATTATG+GGG - chr1_4:1449945-1449964 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG - chr1_4:1449946-1449965 None:intergenic 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG + chr1_4:1450004-1450023 Msa0142500:intron 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG - chr1_4:1450052-1450071 None:intergenic 25.0%
!! CGACTTGTTCTTAAATATTA+TGG + chr1_4:1450196-1450215 Msa0142500:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG + chr1_4:1450493-1450512 Msa0142500:CDS 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG + chr1_4:1450494-1450513 Msa0142500:CDS 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG - chr1_4:1450507-1450526 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG + chr1_4:1450722-1450741 Msa0142500:three_prime_UTR 25.0%
!!! TTTTATTTTCTTCAGTTGGA+AGG + chr1_4:1451200-1451219 Msa0142500:three_prime_UTR 25.0%
! AATGGTTAAGGTCTTAATTA+AGG + chr1_4:1451357-1451376 Msa0142500:three_prime_UTR 25.0%
! TTAATTAAACATAAGGTAGC+AGG - chr1_4:1447631-1447650 None:intergenic 25.0%
! AAGAATTCAGAATTCAGAAA+TGG + chr1_4:1447903-1447922 Msa0142500:exon 25.0%
! AGAATTCAGAATTCAGAAAT+GGG + chr1_4:1447904-1447923 Msa0142500:exon 25.0%
! AGAGTAATTCAAATGTTGTT+TGG + chr1_4:1448160-1448179 Msa0142500:CDS 25.0%
!! GAGTAATTCAAATGTTGTTT+GGG + chr1_4:1448161-1448180 Msa0142500:CDS 25.0%
! GTTGAAAACAGCTTATAAAT+TGG - chr1_4:1448255-1448274 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG - chr1_4:1448506-1448525 None:intergenic 25.0%
! ACTTAGAAACAGAAAGAAAA+CGG - chr1_4:1448895-1448914 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG + chr1_4:1448940-1448959 Msa0142500:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG + chr1_4:1448941-1448960 Msa0142500:intron 25.0%
! TACAAAATGTTGTTAAACAG+TGG - chr1_4:1449051-1449070 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG - chr1_4:1449142-1449161 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG + chr1_4:1449144-1449163 Msa0142500:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG + chr1_4:1449145-1449164 Msa0142500:intron 25.0%
! AAATTGGAAAAAAAGCTACA+AGG + chr1_4:1449434-1449453 Msa0142500:intron 25.0%
! CAAATCTTCACCTTATAAAT+TGG + chr1_4:1449705-1449724 Msa0142500:intron 25.0%
! AACGTTAATGCTGTATTAAT+TGG + chr1_4:1449753-1449772 Msa0142500:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG + chr1_4:1449826-1449845 Msa0142500:intron 25.0%
! TAGAGAAAGAACAAATCAAT+AGG + chr1_4:1449859-1449878 Msa0142500:intron 25.0%
! AATTTGCAACATCAATTATG+GGG - chr1_4:1449945-1449964 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG - chr1_4:1449946-1449965 None:intergenic 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG + chr1_4:1450004-1450023 Msa0142500:intron 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG - chr1_4:1450052-1450071 None:intergenic 25.0%
!! CGACTTGTTCTTAAATATTA+TGG + chr1_4:1450196-1450215 Msa0142500:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG + chr1_4:1450493-1450512 Msa0142500:CDS 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG + chr1_4:1450494-1450513 Msa0142500:CDS 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG - chr1_4:1450507-1450526 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG + chr1_4:1450722-1450741 Msa0142500:three_prime_UTR 25.0%
!!! TTTTATTTTCTTCAGTTGGA+AGG + chr1_4:1451200-1451219 Msa0142500:three_prime_UTR 25.0%
! AATGGTTAAGGTCTTAATTA+AGG + chr1_4:1451357-1451376 Msa0142500:three_prime_UTR 25.0%
CCATGAAAAAGAGAGAAAAA+TGG - chr1_4:1447542-1447561 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG + chr1_4:1447539-1447558 Msa0142500:intron 30.0%
AAGAGACAGAGAAACATAAT+TGG - chr1_4:1447585-1447604 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG - chr1_4:1447608-1447627 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG - chr1_4:1447991-1448010 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG + chr1_4:1448024-1448043 Msa0142500:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG - chr1_4:1448404-1448423 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG - chr1_4:1448552-1448571 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG + chr1_4:1448674-1448693 Msa0142500:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG - chr1_4:1448688-1448707 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG - chr1_4:1448845-1448864 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG - chr1_4:1449139-1449158 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG + chr1_4:1449159-1449178 Msa0142500:intron 30.0%
! AGCTACAAGGTTTTCTTAAA+TGG + chr1_4:1449447-1449466 Msa0142500:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG - chr1_4:1449520-1449539 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG + chr1_4:1449626-1449645 Msa0142500:intron 30.0%
CCTCACAAAACCAATTTATA+AGG - chr1_4:1449718-1449737 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG + chr1_4:1449715-1449734 Msa0142500:intron 30.0%
AATGCTGTATTAATTGGTTG+AGG + chr1_4:1449759-1449778 Msa0142500:intron 30.0%
ATGCTGTATTAATTGGTTGA+GGG + chr1_4:1449760-1449779 Msa0142500:intron 30.0%
GGAATTTGCAACATCAATTA+TGG - chr1_4:1449947-1449966 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG - chr1_4:1450164-1450183 None:intergenic 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG + chr1_4:1450162-1450181 Msa0142500:intron 30.0%
CAACCTTAAGCTAGAATAAT+AGG - chr1_4:1450168-1450187 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG + chr1_4:1450166-1450185 Msa0142500:intron 30.0%
CTCATAGTTTACTGATATGT+GGG - chr1_4:1450266-1450285 None:intergenic 30.0%
ACTCATAGTTTACTGATATG+TGG - chr1_4:1450267-1450286 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG - chr1_4:1450294-1450313 None:intergenic 30.0%
AAATGATCATTGAACTCTGT+TGG - chr1_4:1450295-1450314 None:intergenic 30.0%
!! TCATCGATTCTCGAAAATAA+GGG - chr1_4:1450638-1450657 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG - chr1_4:1450639-1450658 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG - chr1_4:1450699-1450718 None:intergenic 30.0%
AATTCATGAATGTCTGTTCT+TGG + chr1_4:1450880-1450899 Msa0142500:three_prime_UTR 30.0%
ATATTTGTGTATGACTAGGA+TGG + chr1_4:1451171-1451190 Msa0142500:three_prime_UTR 30.0%
CATGATAAGGTTATAGTTGT+CGG + chr1_4:1451268-1451287 Msa0142500:three_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG + chr1_4:1451345-1451364 Msa0142500:three_prime_UTR 30.0%
ATTAAGACCTTAACCATTCT+TGG - chr1_4:1451355-1451374 None:intergenic 30.0%
CCATGAAAAAGAGAGAAAAA+TGG - chr1_4:1447542-1447561 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG + chr1_4:1447539-1447558 Msa0142500:intron 30.0%
AAGAGACAGAGAAACATAAT+TGG - chr1_4:1447585-1447604 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG - chr1_4:1447608-1447627 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG - chr1_4:1447991-1448010 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG + chr1_4:1448024-1448043 Msa0142500:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG - chr1_4:1448404-1448423 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG - chr1_4:1448552-1448571 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG + chr1_4:1448674-1448693 Msa0142500:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG - chr1_4:1448688-1448707 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG - chr1_4:1448845-1448864 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG - chr1_4:1449139-1449158 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG + chr1_4:1449159-1449178 Msa0142500:intron 30.0%
! AGCTACAAGGTTTTCTTAAA+TGG + chr1_4:1449447-1449466 Msa0142500:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG - chr1_4:1449520-1449539 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG + chr1_4:1449626-1449645 Msa0142500:intron 30.0%
CCTCACAAAACCAATTTATA+AGG - chr1_4:1449718-1449737 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG + chr1_4:1449715-1449734 Msa0142500:intron 30.0%
AATGCTGTATTAATTGGTTG+AGG + chr1_4:1449759-1449778 Msa0142500:intron 30.0%
ATGCTGTATTAATTGGTTGA+GGG + chr1_4:1449760-1449779 Msa0142500:intron 30.0%
GGAATTTGCAACATCAATTA+TGG - chr1_4:1449947-1449966 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG - chr1_4:1450164-1450183 None:intergenic 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG + chr1_4:1450162-1450181 Msa0142500:intron 30.0%
CAACCTTAAGCTAGAATAAT+AGG - chr1_4:1450168-1450187 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG + chr1_4:1450166-1450185 Msa0142500:intron 30.0%
CTCATAGTTTACTGATATGT+GGG - chr1_4:1450266-1450285 None:intergenic 30.0%
ACTCATAGTTTACTGATATG+TGG - chr1_4:1450267-1450286 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG - chr1_4:1450294-1450313 None:intergenic 30.0%
AAATGATCATTGAACTCTGT+TGG - chr1_4:1450295-1450314 None:intergenic 30.0%
!! TCATCGATTCTCGAAAATAA+GGG - chr1_4:1450638-1450657 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG - chr1_4:1450639-1450658 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG - chr1_4:1450699-1450718 None:intergenic 30.0%
AATTCATGAATGTCTGTTCT+TGG + chr1_4:1450880-1450899 Msa0142500:three_prime_UTR 30.0%
ATATTTGTGTATGACTAGGA+TGG + chr1_4:1451171-1451190 Msa0142500:three_prime_UTR 30.0%
CATGATAAGGTTATAGTTGT+CGG + chr1_4:1451268-1451287 Msa0142500:three_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG + chr1_4:1451345-1451364 Msa0142500:three_prime_UTR 30.0%
ATTAAGACCTTAACCATTCT+TGG - chr1_4:1451355-1451374 None:intergenic 30.0%
! GTAATATTTTCATACCCCAG+TGG + chr1_4:1447361-1447380 Msa0142500:five_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG - chr1_4:1447379-1447398 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG - chr1_4:1447424-1447443 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG - chr1_4:1447505-1447524 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG - chr1_4:1447534-1447553 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG - chr1_4:1447535-1447554 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG + chr1_4:1447913-1447932 Msa0142500:exon 35.0%
ATTCAGAAATGGGATCTGAA+GGG + chr1_4:1447914-1447933 Msa0142500:exon 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG + chr1_4:1447961-1447980 Msa0142500:CDS 35.0%
CTCTCTAGTGTCAATTTAGA+TGG - chr1_4:1448405-1448424 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG + chr1_4:1448787-1448806 Msa0142500:intron 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG - chr1_4:1449033-1449052 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG + chr1_4:1449077-1449096 Msa0142500:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG - chr1_4:1449115-1449134 None:intergenic 35.0%
! ACTCAACATCTACCGATTAT+TGG - chr1_4:1449174-1449193 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG - chr1_4:1449273-1449292 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG + chr1_4:1449276-1449295 Msa0142500:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG + chr1_4:1449277-1449296 Msa0142500:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG - chr1_4:1449363-1449382 None:intergenic 35.0%
ACGATATCAGATGCAAAACA+TGG - chr1_4:1449484-1449503 None:intergenic 35.0%
!!! TGGTTTTGTGAGGTTAAGTT+AGG + chr1_4:1449725-1449744 Msa0142500:intron 35.0%
GTCTTATAGACTTGTATGGT+TGG + chr1_4:1450008-1450027 Msa0142500:intron 35.0%
GAACACACGATATTTGATCA+TGG + chr1_4:1450090-1450109 Msa0142500:intron 35.0%
CGATATTTGATCATGGAGTT+CGG + chr1_4:1450097-1450116 Msa0142500:intron 35.0%
TAGTTTACTGATATGTGGGT+AGG - chr1_4:1450262-1450281 None:intergenic 35.0%
AAACCAAAACGAACTTGCAA+AGG + chr1_4:1450350-1450369 Msa0142500:intron 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG - chr1_4:1450356-1450375 None:intergenic 35.0%
GATTTCAAGATTGCATCAAC+AGG - chr1_4:1450485-1450504 None:intergenic 35.0%
TTATGACGTGATGATATCAC+AGG + chr1_4:1450523-1450542 Msa0142500:CDS 35.0%
ATGTGTATTACCACTCTCTT+CGG + chr1_4:1450570-1450589 Msa0142500:CDS 35.0%
GATTGCACAGATATATATGC+TGG + chr1_4:1450902-1450921 Msa0142500:three_prime_UTR 35.0%
AGCAAAAATGACACACATGT+TGG + chr1_4:1450993-1451012 Msa0142500:three_prime_UTR 35.0%
!! ATTTTTCCTTGGTGTGCTTA+AGG - chr1_4:1451032-1451051 None:intergenic 35.0%
AAACTGTACTCAACCATACA+AGG - chr1_4:1451129-1451148 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG + chr1_4:1451167-1451186 Msa0142500:three_prime_UTR 35.0%
TTGGAAGGAAGTGGAATATA+AGG + chr1_4:1451215-1451234 Msa0142500:three_prime_UTR 35.0%
TCATGGCATTCACATGTAAA+AGG - chr1_4:1451253-1451272 None:intergenic 35.0%
TACATGTGAATGCCATGATA+AGG + chr1_4:1451255-1451274 Msa0142500:three_prime_UTR 35.0%
CGACAACTATAACCTTATCA+TGG - chr1_4:1451270-1451289 None:intergenic 35.0%
GTCGGTAAAGTTAGCATATA+TGG + chr1_4:1451286-1451305 Msa0142500:three_prime_UTR 35.0%
TGGGAATTATCTTCCAAGAA+TGG + chr1_4:1451339-1451358 Msa0142500:three_prime_UTR 35.0%
! GTAATATTTTCATACCCCAG+TGG + chr1_4:1447361-1447380 Msa0142500:five_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG - chr1_4:1447379-1447398 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG - chr1_4:1447424-1447443 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG - chr1_4:1447505-1447524 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG - chr1_4:1447534-1447553 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG - chr1_4:1447535-1447554 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG + chr1_4:1447913-1447932 Msa0142500:exon 35.0%
ATTCAGAAATGGGATCTGAA+GGG + chr1_4:1447914-1447933 Msa0142500:exon 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG + chr1_4:1447961-1447980 Msa0142500:CDS 35.0%
CTCTCTAGTGTCAATTTAGA+TGG - chr1_4:1448405-1448424 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG + chr1_4:1448787-1448806 Msa0142500:intron 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG - chr1_4:1449033-1449052 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG + chr1_4:1449077-1449096 Msa0142500:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG - chr1_4:1449115-1449134 None:intergenic 35.0%
! ACTCAACATCTACCGATTAT+TGG - chr1_4:1449174-1449193 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG - chr1_4:1449273-1449292 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG + chr1_4:1449276-1449295 Msa0142500:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG + chr1_4:1449277-1449296 Msa0142500:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG - chr1_4:1449363-1449382 None:intergenic 35.0%
ACGATATCAGATGCAAAACA+TGG - chr1_4:1449484-1449503 None:intergenic 35.0%
!!! TGGTTTTGTGAGGTTAAGTT+AGG + chr1_4:1449725-1449744 Msa0142500:intron 35.0%
GTCTTATAGACTTGTATGGT+TGG + chr1_4:1450008-1450027 Msa0142500:intron 35.0%
GAACACACGATATTTGATCA+TGG + chr1_4:1450090-1450109 Msa0142500:intron 35.0%
CGATATTTGATCATGGAGTT+CGG + chr1_4:1450097-1450116 Msa0142500:intron 35.0%
TAGTTTACTGATATGTGGGT+AGG - chr1_4:1450262-1450281 None:intergenic 35.0%
AAACCAAAACGAACTTGCAA+AGG + chr1_4:1450350-1450369 Msa0142500:intron 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG - chr1_4:1450356-1450375 None:intergenic 35.0%
GATTTCAAGATTGCATCAAC+AGG - chr1_4:1450485-1450504 None:intergenic 35.0%
TTATGACGTGATGATATCAC+AGG + chr1_4:1450523-1450542 Msa0142500:CDS 35.0%
ATGTGTATTACCACTCTCTT+CGG + chr1_4:1450570-1450589 Msa0142500:CDS 35.0%
GATTGCACAGATATATATGC+TGG + chr1_4:1450902-1450921 Msa0142500:three_prime_UTR 35.0%
AGCAAAAATGACACACATGT+TGG + chr1_4:1450993-1451012 Msa0142500:three_prime_UTR 35.0%
!! ATTTTTCCTTGGTGTGCTTA+AGG - chr1_4:1451032-1451051 None:intergenic 35.0%
AAACTGTACTCAACCATACA+AGG - chr1_4:1451129-1451148 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG + chr1_4:1451167-1451186 Msa0142500:three_prime_UTR 35.0%
TTGGAAGGAAGTGGAATATA+AGG + chr1_4:1451215-1451234 Msa0142500:three_prime_UTR 35.0%
TCATGGCATTCACATGTAAA+AGG - chr1_4:1451253-1451272 None:intergenic 35.0%
TACATGTGAATGCCATGATA+AGG + chr1_4:1451255-1451274 Msa0142500:three_prime_UTR 35.0%
CGACAACTATAACCTTATCA+TGG - chr1_4:1451270-1451289 None:intergenic 35.0%
GTCGGTAAAGTTAGCATATA+TGG + chr1_4:1451286-1451305 Msa0142500:three_prime_UTR 35.0%
TGGGAATTATCTTCCAAGAA+TGG + chr1_4:1451339-1451358 Msa0142500:three_prime_UTR 35.0%
GTTTGGATAAAATGCCACTG+GGG - chr1_4:1447378-1447397 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG - chr1_4:1447380-1447399 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG - chr1_4:1447395-1447414 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG + chr1_4:1448036-1448055 Msa0142500:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG + chr1_4:1448071-1448090 Msa0142500:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG - chr1_4:1448130-1448149 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG + chr1_4:1448131-1448150 Msa0142500:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG - chr1_4:1448779-1448798 None:intergenic 40.0%
ACTATAGGACTGTAGCATAG+TGG - chr1_4:1449018-1449037 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG + chr1_4:1449278-1449297 Msa0142500:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG + chr1_4:1449358-1449377 Msa0142500:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG + chr1_4:1449362-1449381 Msa0142500:CDS 40.0%
GCAAGATCATAACTCACTTG+TGG - chr1_4:1449391-1449410 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG + chr1_4:1449954-1449973 Msa0142500:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG + chr1_4:1449961-1449980 Msa0142500:intron 40.0%
CAATCACTTACCACTTTCCA+TGG - chr1_4:1449974-1449993 None:intergenic 40.0%
GTGGTAAGTGATTGCGTTTA+TGG + chr1_4:1449980-1449999 Msa0142500:intron 40.0%
TCAAGGGTAATCTTGCAATC+TGG - chr1_4:1450223-1450242 None:intergenic 40.0%
! GAGATTTACAGCCTCTCTTT+TGG + chr1_4:1450670-1450689 Msa0142500:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG + chr1_4:1450673-1450692 Msa0142500:CDS 40.0%
TACATACACAACCAGATGAC+AGG - chr1_4:1450758-1450777 None:intergenic 40.0%
TGCACAGATATATATGCTGG+TGG + chr1_4:1450905-1450924 Msa0142500:three_prime_UTR 40.0%
! GCATGTGTGACATTTTTCCT+TGG - chr1_4:1451043-1451062 None:intergenic 40.0%
AGGAAAAATGTCACACATGC+TGG + chr1_4:1451043-1451062 Msa0142500:three_prime_UTR 40.0%
ACTGTTGAGTCAACCTTGTA+TGG + chr1_4:1451113-1451132 Msa0142500:three_prime_UTR 40.0%
TTTCTTCAGTTGGAAGGAAG+TGG + chr1_4:1451206-1451225 Msa0142500:three_prime_UTR 40.0%
GTTTGGATAAAATGCCACTG+GGG - chr1_4:1447378-1447397 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG - chr1_4:1447380-1447399 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG - chr1_4:1447395-1447414 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG + chr1_4:1448036-1448055 Msa0142500:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG + chr1_4:1448071-1448090 Msa0142500:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG - chr1_4:1448130-1448149 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG + chr1_4:1448131-1448150 Msa0142500:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG - chr1_4:1448779-1448798 None:intergenic 40.0%
ACTATAGGACTGTAGCATAG+TGG - chr1_4:1449018-1449037 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG + chr1_4:1449278-1449297 Msa0142500:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG + chr1_4:1449358-1449377 Msa0142500:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG + chr1_4:1449362-1449381 Msa0142500:CDS 40.0%
GCAAGATCATAACTCACTTG+TGG - chr1_4:1449391-1449410 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG + chr1_4:1449954-1449973 Msa0142500:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG + chr1_4:1449961-1449980 Msa0142500:intron 40.0%
CAATCACTTACCACTTTCCA+TGG - chr1_4:1449974-1449993 None:intergenic 40.0%
GTGGTAAGTGATTGCGTTTA+TGG + chr1_4:1449980-1449999 Msa0142500:intron 40.0%
TCAAGGGTAATCTTGCAATC+TGG - chr1_4:1450223-1450242 None:intergenic 40.0%
! GAGATTTACAGCCTCTCTTT+TGG + chr1_4:1450670-1450689 Msa0142500:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG + chr1_4:1450673-1450692 Msa0142500:CDS 40.0%
TACATACACAACCAGATGAC+AGG - chr1_4:1450758-1450777 None:intergenic 40.0%
TGCACAGATATATATGCTGG+TGG + chr1_4:1450905-1450924 Msa0142500:three_prime_UTR 40.0%
! GCATGTGTGACATTTTTCCT+TGG - chr1_4:1451043-1451062 None:intergenic 40.0%
AGGAAAAATGTCACACATGC+TGG + chr1_4:1451043-1451062 Msa0142500:three_prime_UTR 40.0%
ACTGTTGAGTCAACCTTGTA+TGG + chr1_4:1451113-1451132 Msa0142500:three_prime_UTR 40.0%
TTTCTTCAGTTGGAAGGAAG+TGG + chr1_4:1451206-1451225 Msa0142500:three_prime_UTR 40.0%
!! CTTCCAGTTGGTGTTACTCT+TGG + chr1_4:1448048-1448067 Msa0142500:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG - chr1_4:1448054-1448073 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG + chr1_4:1448110-1448129 Msa0142500:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG - chr1_4:1448114-1448133 None:intergenic 45.0%
GAATCAAACCTGAGACCTCA+AGG + chr1_4:1448424-1448443 Msa0142500:intron 45.0%
CAATACGCAATTGACAGCAC+TGG - chr1_4:1448970-1448989 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG + chr1_4:1449279-1449298 Msa0142500:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG + chr1_4:1449533-1449552 Msa0142500:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG + chr1_4:1449537-1449556 Msa0142500:CDS 45.0%
GAGAAATTCCTCCATCCTCA+AGG - chr1_4:1449551-1449570 None:intergenic 45.0%
AGGAATTTCTCGAACGAGAG+AGG + chr1_4:1449560-1449579 Msa0142500:CDS 45.0%
CTTACCACTTTCCATGGCAT+TGG - chr1_4:1449968-1449987 None:intergenic 45.0%
GTTCGCTACAATCACAACCT+TGG + chr1_4:1450032-1450051 Msa0142500:intron 45.0%
! TTCCTTGGTGTGCTTAAGGT+TGG - chr1_4:1451028-1451047 None:intergenic 45.0%
!! CTTCCAGTTGGTGTTACTCT+TGG + chr1_4:1448048-1448067 Msa0142500:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG - chr1_4:1448054-1448073 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG + chr1_4:1448110-1448129 Msa0142500:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG - chr1_4:1448114-1448133 None:intergenic 45.0%
GAATCAAACCTGAGACCTCA+AGG + chr1_4:1448424-1448443 Msa0142500:intron 45.0%
CAATACGCAATTGACAGCAC+TGG - chr1_4:1448970-1448989 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG + chr1_4:1449279-1449298 Msa0142500:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG + chr1_4:1449533-1449552 Msa0142500:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG + chr1_4:1449537-1449556 Msa0142500:CDS 45.0%
GAGAAATTCCTCCATCCTCA+AGG - chr1_4:1449551-1449570 None:intergenic 45.0%
AGGAATTTCTCGAACGAGAG+AGG + chr1_4:1449560-1449579 Msa0142500:CDS 45.0%
CTTACCACTTTCCATGGCAT+TGG - chr1_4:1449968-1449987 None:intergenic 45.0%
GTTCGCTACAATCACAACCT+TGG + chr1_4:1450032-1450051 Msa0142500:intron 45.0%
! TTCCTTGGTGTGCTTAAGGT+TGG - chr1_4:1451028-1451047 None:intergenic 45.0%
TCTCGTGTGGTTAGTGACAG+CGG - chr1_4:1447321-1447340 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG + chr1_4:1447514-1447533 Msa0142500:five_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG + chr1_4:1448075-1448094 Msa0142500:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG + chr1_4:1448081-1448100 Msa0142500:CDS 50.0%
TCAAACCTGAGACCTCAAGG+AGG + chr1_4:1448427-1448446 Msa0142500:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG - chr1_4:1448461-1448480 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG - chr1_4:1448462-1448481 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG + chr1_4:1448462-1448481 Msa0142500:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr1_4:1448468-1448487 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr1_4:1448469-1448488 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr1_4:1448474-1448493 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG - chr1_4:1448492-1448511 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG - chr1_4:1448493-1448512 None:intergenic 50.0%
GCAGTTATGGCGGCGTTATA+GGG - chr1_4:1449129-1449148 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG - chr1_4:1449130-1449149 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG + chr1_4:1449314-1449333 Msa0142500:CDS 50.0%
AAGGTTTGCCATTGAGCGGT+TGG + chr1_4:1449318-1449337 Msa0142500:CDS 50.0%
! ATTTGCTGCCAACCGCTCAA+TGG - chr1_4:1449329-1449348 None:intergenic 50.0%
CCTCCATCCTCAAGGACTAT+TGG - chr1_4:1449543-1449562 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG + chr1_4:1449540-1449559 Msa0142500:CDS 50.0%
TCGCGTGATCTGTAGCATGT+TGG + chr1_4:1449611-1449630 Msa0142500:intron 50.0%
TCGCTTGAGGTACGGTTCAA+GGG - chr1_4:1450239-1450258 None:intergenic 50.0%
ATATGTGGGTAGGTCGCTTG+AGG - chr1_4:1450252-1450271 None:intergenic 50.0%
GTGATGATATCACAGGACGC+AGG + chr1_4:1450530-1450549 Msa0142500:CDS 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG + chr1_4:1450586-1450605 Msa0142500:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG + chr1_4:1450587-1450606 Msa0142500:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG - chr1_4:1450684-1450703 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG - chr1_4:1450752-1450771 None:intergenic 50.0%
GACCAACCTTAAGCACACCA+AGG + chr1_4:1451023-1451042 Msa0142500:three_prime_UTR 50.0%
TCTCGTGTGGTTAGTGACAG+CGG - chr1_4:1447321-1447340 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG + chr1_4:1447514-1447533 Msa0142500:five_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG + chr1_4:1448075-1448094 Msa0142500:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG + chr1_4:1448081-1448100 Msa0142500:CDS 50.0%
TCAAACCTGAGACCTCAAGG+AGG + chr1_4:1448427-1448446 Msa0142500:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG - chr1_4:1448461-1448480 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG - chr1_4:1448462-1448481 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG + chr1_4:1448462-1448481 Msa0142500:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr1_4:1448468-1448487 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr1_4:1448469-1448488 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr1_4:1448474-1448493 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG - chr1_4:1448492-1448511 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG - chr1_4:1448493-1448512 None:intergenic 50.0%
GCAGTTATGGCGGCGTTATA+GGG - chr1_4:1449129-1449148 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG - chr1_4:1449130-1449149 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG + chr1_4:1449314-1449333 Msa0142500:CDS 50.0%
AAGGTTTGCCATTGAGCGGT+TGG + chr1_4:1449318-1449337 Msa0142500:CDS 50.0%
! ATTTGCTGCCAACCGCTCAA+TGG - chr1_4:1449329-1449348 None:intergenic 50.0%
CCTCCATCCTCAAGGACTAT+TGG - chr1_4:1449543-1449562 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG + chr1_4:1449540-1449559 Msa0142500:CDS 50.0%
TCGCGTGATCTGTAGCATGT+TGG + chr1_4:1449611-1449630 Msa0142500:intron 50.0%
TCGCTTGAGGTACGGTTCAA+GGG - chr1_4:1450239-1450258 None:intergenic 50.0%
ATATGTGGGTAGGTCGCTTG+AGG - chr1_4:1450252-1450271 None:intergenic 50.0%
GTGATGATATCACAGGACGC+AGG + chr1_4:1450530-1450549 Msa0142500:CDS 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG + chr1_4:1450586-1450605 Msa0142500:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG + chr1_4:1450587-1450606 Msa0142500:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG - chr1_4:1450684-1450703 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG - chr1_4:1450752-1450771 None:intergenic 50.0%
GACCAACCTTAAGCACACCA+AGG + chr1_4:1451023-1451042 Msa0142500:three_prime_UTR 50.0%
CTCGTGTGGTTAGTGACAGC+GGG - chr1_4:1447320-1447339 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG - chr1_4:1447334-1447353 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG + chr1_4:1447331-1447350 Msa0142500:five_prime_UTR 55.0%
TACCACTAGGCCAACCCAAG+TGG + chr1_4:1448475-1448494 Msa0142500:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + chr1_4:1448476-1448495 Msa0142500:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG - chr1_4:1448488-1448507 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG + chr1_4:1449289-1449308 Msa0142500:CDS 55.0%
GTCGGAGACGTAGGCACAAT+TGG - chr1_4:1450123-1450142 None:intergenic 55.0%
TACTGCAGCAGCTCTGCAGT+CGG - chr1_4:1450141-1450160 None:intergenic 55.0%
GTCGCTTGAGGTACGGTTCA+AGG - chr1_4:1450240-1450259 None:intergenic 55.0%
TGGGTAGGTCGCTTGAGGTA+CGG - chr1_4:1450247-1450266 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG - chr1_4:1450583-1450602 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG + chr1_4:1450744-1450763 Msa0142500:three_prime_UTR 55.0%
CTCGTGTGGTTAGTGACAGC+GGG - chr1_4:1447320-1447339 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG - chr1_4:1447334-1447353 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG + chr1_4:1447331-1447350 Msa0142500:five_prime_UTR 55.0%
TACCACTAGGCCAACCCAAG+TGG + chr1_4:1448475-1448494 Msa0142500:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + chr1_4:1448476-1448495 Msa0142500:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG - chr1_4:1448488-1448507 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG + chr1_4:1449289-1449308 Msa0142500:CDS 55.0%
GTCGGAGACGTAGGCACAAT+TGG - chr1_4:1450123-1450142 None:intergenic 55.0%
TACTGCAGCAGCTCTGCAGT+CGG - chr1_4:1450141-1450160 None:intergenic 55.0%
GTCGCTTGAGGTACGGTTCA+AGG - chr1_4:1450240-1450259 None:intergenic 55.0%
TGGGTAGGTCGCTTGAGGTA+CGG - chr1_4:1450247-1450266 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG - chr1_4:1450583-1450602 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG + chr1_4:1450744-1450763 Msa0142500:three_prime_UTR 55.0%
GTGCTCCTCCTTGAGGTCTC+AGG - chr1_4:1448435-1448454 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG - chr1_4:1448442-1448461 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - chr1_4:1448480-1448499 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG + chr1_4:1448480-1448499 Msa0142500:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG + chr1_4:1449299-1449318 Msa0142500:CDS 60.0%
AGCTCTGCAGTCGGAGACGT+AGG - chr1_4:1450132-1450151 None:intergenic 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG - chr1_4:1448435-1448454 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG - chr1_4:1448442-1448461 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - chr1_4:1448480-1448499 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG + chr1_4:1448480-1448499 Msa0142500:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG + chr1_4:1449299-1449318 Msa0142500:CDS 60.0%
AGCTCTGCAGTCGGAGACGT+AGG - chr1_4:1450132-1450151 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1447317 1451410 1447317 ID=Msa0142500;Name=Msa0142500
chr1_4 mRNA 1447317 1451410 1447317 ID=Msa0142500-mRNA-1;Parent=Msa0142500;Name=Msa0142500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=283|1|1|1|0.75|0.6|5|695|218
chr1_4 exon 1447317 1447535 1447317 ID=Msa0142500-mRNA-1:exon:466;Parent=Msa0142500-mRNA-1
chr1_4 exon 1447858 1448182 1447858 ID=Msa0142500-mRNA-1:exon:467;Parent=Msa0142500-mRNA-1
chr1_4 exon 1449289 1449393 1449289 ID=Msa0142500-mRNA-1:exon:468;Parent=Msa0142500-mRNA-1
chr1_4 exon 1449534 1449581 1449534 ID=Msa0142500-mRNA-1:exon:469;Parent=Msa0142500-mRNA-1
chr1_4 exon 1450473 1451410 1450473 ID=Msa0142500-mRNA-1:exon:470;Parent=Msa0142500-mRNA-1
chr1_4 five_prime_UTR 1447317 1447535 1447317 ID=Msa0142500-mRNA-1:five_prime_utr;Parent=Msa0142500-mRNA-1
chr1_4 five_prime_UTR 1447858 1447921 1447858 ID=Msa0142500-mRNA-1:five_prime_utr;Parent=Msa0142500-mRNA-1
chr1_4 CDS 1447922 1448182 1447922 ID=Msa0142500-mRNA-1:cds;Parent=Msa0142500-mRNA-1
chr1_4 CDS 1449289 1449393 1449289 ID=Msa0142500-mRNA-1:cds;Parent=Msa0142500-mRNA-1
chr1_4 CDS 1449534 1449581 1449534 ID=Msa0142500-mRNA-1:cds;Parent=Msa0142500-mRNA-1
chr1_4 CDS 1450473 1450715 1450473 ID=Msa0142500-mRNA-1:cds;Parent=Msa0142500-mRNA-1
chr1_4 three_prime_UTR 1450716 1451410 1450716 ID=Msa0142500-mRNA-1:three_prime_utr;Parent=Msa0142500-mRNA-1
Gene Sequence

>Msa0142500

ATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGATTATTGTTAATAATCTGAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGTGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACAGAGAGTAATTCAAATGTTGTTTGGCTTCACTTGGGGGTGAACAGTGGAGCTGCAAGGTTTGCCATTGAGCGGTTGGCAGCAAATGAAGCTACTTTCCGCTGTTCTGATGAATTAGGATGGCAACCACAACAAGTACCAATAGTCCTTGAGGATGGAGGAATTTCTCGAACGAGAGAGACTTCTCTGCCTGTTGATGCAATCTTGAAATCCTTGAAAAAGGGAAAAGATTATGACGTGATGATATCACAGGACGCAGGACGATTTGTTTGCAATTATGTGTATTACCACTCTCTTCGGTTCGCAGAACAGAAGGGTAACAAGTCTCTATTTGTTCATGTTCCCTTATTTTCGAGAATCGATGAAGAAACTCAGATGAGATTTACAGCCTCTCTTTTGGAGGCCATTGCTTCTGCATGTTAA

Protein sequence

>Msa0142500

MGSEGPKKITIHVTGFKKFQGVPINPTEIIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNSNVVWLHLGVNSGAARFAIERLAANEATFRCSDELGWQPQQVPIVLEDGGISRTRETSLPVDAILKSLKKGKDYDVMISQDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSRIDEETQMRFTASLLEAIASAC*