AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250110 MtrunA17_Chr8g0365921 95.872 218 9 0 1 218 1 218 2.72e-159 439
Msa1250110 MtrunA17_Chr1g0193061 68.182 220 65 4 1 216 1 219 5.30e-106 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250110 AT1G23440.1 69.725 218 65 1 1 218 1 217 2.32e-113 323
Msa1250110 AT1G23440.3 69.725 218 65 1 1 218 1 217 2.32e-113 323
Msa1250110 AT1G56700.1 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa1250110 AT1G56700.2 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa1250110 AT1G56700.4 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa1250110 AT1G56700.3 60.000 190 74 2 30 218 1 189 3.53e-82 243
Msa1250110 AT1G23440.2 62.222 90 34 0 1 90 1 90 6.47e-35 119

Find 92 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATAAATTATTTGTTAT+TGG 0.120150 8_2:-45301479 Msa1250110:three_prime_UTR
TTCATCGATTCTCGAAAATA+AGG 0.171114 8_2:+45301801 None:intergenic
ATAATCTCTGTAGGGTTTAT+TGG 0.189118 8_2:+45304449 None:intergenic
AATCTTGAAATCCTTGAAAA+AGG 0.203646 8_2:-45301944 Msa1250110:CDS
ATTAAGACCTTAACCATTCT+TGG 0.205826 8_2:+45301085 None:intergenic
AAAATTACAATTCATGTAAC+TGG 0.219675 8_2:-45304494 Msa1250110:CDS
AATTCATGAATGTCTGTTCT+TGG 0.239447 8_2:-45301557 Msa1250110:three_prime_UTR
GTCGGTAAAGTTAGCATATA+TGG 0.241397 8_2:-45301151 Msa1250110:three_prime_UTR
AATGGTTAAGGTCTTAATTA+AGG 0.264670 8_2:-45301080 Msa1250110:three_prime_UTR
TTCCGCTGTTCTGATGAATT+AGG 0.270479 8_2:-45303079 Msa1250110:CDS
GAGATTTACAGCCTCTCTTT+TGG 0.294280 8_2:-45301767 Msa1250110:CDS
TCATGGCATTCACATGTAAA+AGG 0.308896 8_2:+45301187 None:intergenic
AGAGTAATTCAAATGTTGTT+TGG 0.313563 8_2:-45304277 Msa1250110:CDS
TTGGAAGGAAGTGGAATATA+AGG 0.343178 8_2:-45301222 Msa1250110:three_prime_UTR
TGTTTGACTCTTCTGCTGTT+TGG 0.356786 8_2:+45305045 None:intergenic
CCTCCATCCTCAAGGACTAT+TGG 0.368174 8_2:+45302897 None:intergenic
CTTCCAGTTGGTGTTACTCT+TGG 0.368291 8_2:-45304389 Msa1250110:CDS
AAGAATTCAGAATTCAGAAA+TGG 0.372313 8_2:-45304534 Msa1250110:exon
GACTGCCATGTCCTGTCATC+TGG 0.374311 8_2:-45301693 Msa1250110:three_prime_UTR
GAGTAATTCAAATGTTGTTT+GGG 0.388882 8_2:-45304276 Msa1250110:intron
TCATCGATTCTCGAAAATAA+GGG 0.399792 8_2:+45301802 None:intergenic
TTCCTTGGTGTGCTTAAGGT+TGG 0.406677 8_2:+45301412 None:intergenic
TTATCTTCCAAGAATGGTTA+AGG 0.412459 8_2:-45301092 Msa1250110:three_prime_UTR
AAATAAATAAATAGTATATG+TGG 0.418546 8_2:-45301118 Msa1250110:three_prime_UTR
ATGTGTATTACCACTCTCTT+CGG 0.421496 8_2:-45301867 Msa1250110:CDS
TACATGTGAATGCCATGATA+AGG 0.423191 8_2:-45301182 Msa1250110:three_prime_UTR
ACTGTTGAGTCAACCTTGTA+TGG 0.423818 8_2:-45301324 Msa1250110:three_prime_UTR
ATTTATGCTTCAGCTTCACT+TGG 0.429836 8_2:-45303161 Msa1250110:intron
TTTATGCTTCAGCTTCACTT+GGG 0.439902 8_2:-45303160 Msa1250110:intron
CTTCCAAGAGTAACACCAAC+TGG 0.451339 8_2:+45304386 None:intergenic
ACTGGGTTTAAGAAGTTTCA+AGG 0.460584 8_2:-45304476 Msa1250110:CDS
TTTCTTCAGTTGGAAGGAAG+TGG 0.461320 8_2:-45301231 Msa1250110:three_prime_UTR
TTATTAACAATAATCTCTGT+AGG 0.465678 8_2:+45304440 None:intergenic
TGGGAATTATCTTCCAAGAA+TGG 0.466260 8_2:-45301098 Msa1250110:three_prime_UTR
GATTTCAAGATTGCATCAAC+AGG 0.476405 8_2:+45301955 None:intergenic
CTGTTTGGATAAAATGCCAC+TGG 0.477189 8_2:+45305060 None:intergenic
AGAATTCAGAATTCAGAAAT+GGG 0.477928 8_2:-45304533 Msa1250110:exon
CATGATAAGGTTATAGTTGT+CGG 0.480433 8_2:-45301169 Msa1250110:three_prime_UTR
ATTTGCTGCCAACCGCTCAA+TGG 0.484329 8_2:+45303111 None:intergenic
AAACTGTACTCAACCATACA+AGG 0.489075 8_2:+45301311 None:intergenic
TGCACTATTCTTGACGTGGC+TGG 0.492051 8_2:-45304362 Msa1250110:CDS
AAGAAGAAAGCAATGCTTTG+CGG 0.495683 8_2:+45305016 None:intergenic
AGGGATTATGTTGAAAAGAA+AGG 0.499009 8_2:-45304413 Msa1250110:CDS
CTCGTGTGGTTAGTGACAGC+GGG 0.506827 8_2:+45305120 None:intergenic
GGAATCTGTTGTGTCGAAAA+CGG 0.508223 8_2:-45304306 Msa1250110:CDS
AAGGTTTGCCATTGAGCGGT+TGG 0.517019 8_2:-45303119 Msa1250110:CDS
TTATGCTTCAGCTTCACTTG+GGG 0.520510 8_2:-45303159 Msa1250110:intron
TTTCGACACAACAGATTCCA+TGG 0.522218 8_2:+45304310 None:intergenic
AATAAATAAATAGTATATGT+GGG 0.522277 8_2:-45301117 Msa1250110:three_prime_UTR
TCTTCGGTTCGCAGAACAGA+AGG 0.529048 8_2:-45301851 Msa1250110:CDS
AATTCAGAAATGGGATCTGA+AGG 0.532059 8_2:-45304524 Msa1250110:exon
ATTCTTGACGTGGCTGGTGA+TGG 0.533255 8_2:-45304356 Msa1250110:CDS
CGACAACTATAACCTTATCA+TGG 0.536591 8_2:+45301170 None:intergenic
TACATACACAACCAGATGAC+AGG 0.536660 8_2:+45301682 None:intergenic
CTGCAAGGTTTGCCATTGAG+CGG 0.540890 8_2:-45303123 Msa1250110:CDS
AGATTATTGTTAATAATCTG+AGG 0.547702 8_2:-45304433 Msa1250110:CDS
TATTAACAATAATCTCTGTA+GGG 0.553359 8_2:+45304441 None:intergenic
AAATTACAATTCATGTAACT+GGG 0.560230 8_2:-45304493 Msa1250110:CDS
GAGAAATTCCTCCATCCTCA+AGG 0.563765 8_2:+45302889 None:intergenic
TATGCTTCAGCTTCACTTGG+GGG 0.574889 8_2:-45303158 Msa1250110:intron
CCACAGTCGTGTTTCTCGTG+TGG 0.577249 8_2:+45305106 None:intergenic
GTCACACTTCGTGAATTCCC+AGG 0.577319 8_2:-45304923 Msa1250110:intron
TCCTCAGCTTTATCAGACCA+TGG 0.578488 8_2:-45304327 Msa1250110:CDS
GATTATTGTTAATAATCTGA+GGG 0.580790 8_2:-45304432 Msa1250110:CDS
GAAAAGAAAGGTCTTCCAGT+TGG 0.590107 8_2:-45304401 Msa1250110:CDS
AGGAATTTCTCGAACGAGAG+AGG 0.595662 8_2:-45302877 Msa1250110:intron
GTACCAATAGTCCTTGAGGA+TGG 0.605270 8_2:-45302900 Msa1250110:CDS
GATTGCACAGATATATATGC+TGG 0.605384 8_2:-45301535 Msa1250110:three_prime_UTR
TTATTAACATGCAGAAGCAA+TGG 0.607143 8_2:+45301741 None:intergenic
TCTCGTGTGGTTAGTGACAG+CGG 0.615212 8_2:+45305119 None:intergenic
CCAATAGTCCTTGAGGATGG+AGG 0.618477 8_2:-45302897 Msa1250110:CDS
TTATGACGTGATGATATCAC+AGG 0.624899 8_2:-45301914 Msa1250110:CDS
GGGTGAACAGTGGAGCTGCA+AGG 0.626140 8_2:-45303138 Msa1250110:CDS
GCAAGTACCAATAGTCCTTG+AGG 0.628947 8_2:-45302904 Msa1250110:CDS
ATTCAGAAATGGGATCTGAA+GGG 0.630200 8_2:-45304523 Msa1250110:exon
CTTCGGTTCGCAGAACAGAA+GGG 0.630794 8_2:-45301850 Msa1250110:CDS
GCTGTTCTGATGAATTAGGA+TGG 0.630988 8_2:-45303075 Msa1250110:CDS
CACAACCAGATGACAGGACA+TGG 0.632247 8_2:+45301688 None:intergenic
AATTGATTGAATTGTATGCA+AGG 0.637455 8_2:-45301715 Msa1250110:three_prime_UTR
AGCAATGGCCTCCAAAAGAG+AGG 0.639282 8_2:+45301756 None:intergenic
AAGTTGCACTATTCTTGACG+TGG 0.643245 8_2:-45304366 Msa1250110:CDS
TCCATGGTCTGATAAAGCTG+AGG 0.663058 8_2:+45304326 None:intergenic
TGTTTGGATAAAATGCCACT+GGG 0.663298 8_2:+45305061 None:intergenic
GGCTATATTTGTGTATGACT+AGG 0.670813 8_2:-45301270 Msa1250110:three_prime_UTR
ATATTTGTGTATGACTAGGA+TGG 0.674241 8_2:-45301266 Msa1250110:three_prime_UTR
ATCCTAATTCATCAGAACAG+CGG 0.674516 8_2:+45303077 None:intergenic
TGCACAGATATATATGCTGG+TGG 0.698158 8_2:-45301532 Msa1250110:three_prime_UTR
GTTCTGCGAACCGAAGAGAG+TGG 0.713903 8_2:+45301857 None:intergenic
GACCAACCTTAAGCACACCA+AGG 0.715654 8_2:-45301414 Msa1250110:three_prime_UTR
GTGATGATATCACAGGACGC+AGG 0.742675 8_2:-45301907 Msa1250110:CDS
CCACACGAGAAACACGACTG+TGG 0.747428 8_2:-45305106 Msa1250110:five_prime_UTR
GTTTGGATAAAATGCCACTG+GGG 0.838992 8_2:+45305062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATACTACAAAA+AGG + chr8_2:45301186-45301205 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG + chr8_2:45301370-45301389 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG + chr8_2:45302306-45302325 None:intergenic 10.0%
!! TTCTATTATAAAAATAATAC+AGG + chr8_2:45302977-45302996 None:intergenic 10.0%
!!! AGAAATAAATTATTTGTTAT+TGG - chr8_2:45304690-45304709 Msa1250110:intron 10.0%
!! AAATAAATAAATAGTATATG+TGG - chr8_2:45305051-45305070 Msa1250110:five_prime_UTR 10.0%
!! AATAAATAAATAGTATATGT+GGG - chr8_2:45305052-45305071 Msa1250110:five_prime_UTR 10.0%
!! ATAAAAATAATACTACAAAA+AGG + chr8_2:45301186-45301205 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG + chr8_2:45301370-45301389 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG + chr8_2:45302306-45302325 None:intergenic 10.0%
!! TTCTATTATAAAAATAATAC+AGG + chr8_2:45302977-45302996 None:intergenic 10.0%
!!! AGAAATAAATTATTTGTTAT+TGG - chr8_2:45304690-45304709 Msa1250110:intron 10.0%
!! AAATAAATAAATAGTATATG+TGG - chr8_2:45305051-45305070 Msa1250110:five_prime_UTR 10.0%
!! AATAAATAAATAGTATATGT+GGG - chr8_2:45305052-45305071 Msa1250110:five_prime_UTR 10.0%
!! TAATTTAGTGTGATAATTAT+TGG - chr8_2:45301558-45301577 Msa1250110:three_prime_UTR 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG - chr8_2:45301603-45301622 Msa1250110:three_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG - chr8_2:45301604-45301623 Msa1250110:three_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG - chr8_2:45302057-45302076 Msa1250110:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG - chr8_2:45302319-45302338 Msa1250110:intron 15.0%
!!! TTATCTTTTATAGATGAAAT+TGG - chr8_2:45303150-45303169 Msa1250110:CDS 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG + chr8_2:45303543-45303562 None:intergenic 15.0%
!!! GTTCTTTGATTTATTTTATT+TGG - chr8_2:45304569-45304588 Msa1250110:five_prime_UTR 15.0%
!!! AATAATTTATTTCTTTTGCT+TGG + chr8_2:45304684-45304703 None:intergenic 15.0%
!!! TTTTAAACAAAACATTTGAA+TGG - chr8_2:45304878-45304897 Msa1250110:intron 15.0%
!! TAATTTAGTGTGATAATTAT+TGG - chr8_2:45301558-45301577 Msa1250110:three_prime_UTR 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG - chr8_2:45301603-45301622 Msa1250110:three_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG - chr8_2:45301604-45301623 Msa1250110:three_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG - chr8_2:45302057-45302076 Msa1250110:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG - chr8_2:45302319-45302338 Msa1250110:intron 15.0%
!!! TTATCTTTTATAGATGAAAT+TGG - chr8_2:45303150-45303169 Msa1250110:CDS 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG + chr8_2:45303543-45303562 None:intergenic 15.0%
!!! GTTCTTTGATTTATTTTATT+TGG - chr8_2:45304569-45304588 Msa1250110:five_prime_UTR 15.0%
!!! AATAATTTATTTCTTTTGCT+TGG + chr8_2:45304684-45304703 None:intergenic 15.0%
!!! TTTTAAACAAAACATTTGAA+TGG - chr8_2:45304878-45304897 Msa1250110:intron 15.0%
!! AATTGATCAATTTAGTGAAA+AGG - chr8_2:45301448-45301467 Msa1250110:three_prime_UTR 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG - chr8_2:45301449-45301468 Msa1250110:three_prime_UTR 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG + chr8_2:45301672-45301691 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG - chr8_2:45301675-45301694 Msa1250110:three_prime_UTR 20.0%
!! AAATTACAATTCATGTAACT+GGG - chr8_2:45301676-45301695 Msa1250110:three_prime_UTR 20.0%
!! TATTAACAATAATCTCTGTA+GGG + chr8_2:45301731-45301750 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG + chr8_2:45301732-45301751 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG - chr8_2:45301736-45301755 Msa1250110:exon 20.0%
!! GATTATTGTTAATAATCTGA+GGG - chr8_2:45301737-45301756 Msa1250110:exon 20.0%
!! ATTGAATTGCATTAGAAATT+TGG - chr8_2:45302438-45302457 Msa1250110:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG + chr8_2:45302600-45302619 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG + chr8_2:45302664-45302683 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG - chr8_2:45303624-45303643 Msa1250110:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG - chr8_2:45304049-45304068 Msa1250110:intron 20.0%
!!! TGTATTTTATTTTCTTCAGT+TGG - chr8_2:45304928-45304947 Msa1250110:five_prime_UTR 20.0%
!! AATTGATCAATTTAGTGAAA+AGG - chr8_2:45301448-45301467 Msa1250110:three_prime_UTR 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG - chr8_2:45301449-45301468 Msa1250110:three_prime_UTR 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG + chr8_2:45301672-45301691 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG - chr8_2:45301675-45301694 Msa1250110:three_prime_UTR 20.0%
!! AAATTACAATTCATGTAACT+GGG - chr8_2:45301676-45301695 Msa1250110:three_prime_UTR 20.0%
!! TATTAACAATAATCTCTGTA+GGG + chr8_2:45301731-45301750 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG + chr8_2:45301732-45301751 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG - chr8_2:45301736-45301755 Msa1250110:exon 20.0%
!! GATTATTGTTAATAATCTGA+GGG - chr8_2:45301737-45301756 Msa1250110:exon 20.0%
!! ATTGAATTGCATTAGAAATT+TGG - chr8_2:45302438-45302457 Msa1250110:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG + chr8_2:45302600-45302619 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG + chr8_2:45302664-45302683 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG - chr8_2:45303624-45303643 Msa1250110:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG - chr8_2:45304049-45304068 Msa1250110:intron 20.0%
!!! TGTATTTTATTTTCTTCAGT+TGG - chr8_2:45304928-45304947 Msa1250110:five_prime_UTR 20.0%
! TTAATTAAACATAAGGTAGC+AGG + chr8_2:45301363-45301382 None:intergenic 25.0%
! AAGAATTCAGAATTCAGAAA+TGG - chr8_2:45301635-45301654 Msa1250110:three_prime_UTR 25.0%
! AGAATTCAGAATTCAGAAAT+GGG - chr8_2:45301636-45301655 Msa1250110:three_prime_UTR 25.0%
! AGAGTAATTCAAATGTTGTT+TGG - chr8_2:45301892-45301911 Msa1250110:CDS 25.0%
!! GAGTAATTCAAATGTTGTTT+GGG - chr8_2:45301893-45301912 Msa1250110:CDS 25.0%
! GTTGAAAACAGCTTATAAAT+TGG + chr8_2:45301987-45302006 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG + chr8_2:45302238-45302257 None:intergenic 25.0%
! ACTTAGAAACAGAAAGAAAA+CGG + chr8_2:45302627-45302646 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG - chr8_2:45302672-45302691 Msa1250110:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG - chr8_2:45302673-45302692 Msa1250110:intron 25.0%
! TACAAAATGTTGTTAAACAG+TGG + chr8_2:45302783-45302802 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG + chr8_2:45302874-45302893 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG - chr8_2:45302876-45302895 Msa1250110:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG - chr8_2:45302877-45302896 Msa1250110:intron 25.0%
! AAATTGGAAAAAAAGCTACA+AGG - chr8_2:45303166-45303185 Msa1250110:intron 25.0%
! CAAATCTTCACCTTATAAAT+TGG - chr8_2:45303437-45303456 Msa1250110:intron 25.0%
! AACGTTAATGCTGTATTAAT+TGG - chr8_2:45303485-45303504 Msa1250110:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG - chr8_2:45303558-45303577 Msa1250110:intron 25.0%
! TAGAGAAAGAACAAATCAAT+AGG - chr8_2:45303591-45303610 Msa1250110:intron 25.0%
! AATTTGCAACATCAATTATG+GGG + chr8_2:45303677-45303696 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG + chr8_2:45303678-45303697 None:intergenic 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG - chr8_2:45303736-45303755 Msa1250110:intron 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG + chr8_2:45303784-45303803 None:intergenic 25.0%
!! CGACTTGTTCTTAAATATTA+TGG - chr8_2:45303928-45303947 Msa1250110:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG - chr8_2:45304225-45304244 Msa1250110:intron 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG - chr8_2:45304226-45304245 Msa1250110:intron 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG + chr8_2:45304239-45304258 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG - chr8_2:45304454-45304473 Msa1250110:CDS 25.0%
!!! TTTTATTTTCTTCAGTTGGA+AGG - chr8_2:45304932-45304951 Msa1250110:five_prime_UTR 25.0%
! AATGGTTAAGGTCTTAATTA+AGG - chr8_2:45305089-45305108 Msa1250110:five_prime_UTR 25.0%
! TTAATTAAACATAAGGTAGC+AGG + chr8_2:45301363-45301382 None:intergenic 25.0%
! AAGAATTCAGAATTCAGAAA+TGG - chr8_2:45301635-45301654 Msa1250110:three_prime_UTR 25.0%
! AGAATTCAGAATTCAGAAAT+GGG - chr8_2:45301636-45301655 Msa1250110:three_prime_UTR 25.0%
! AGAGTAATTCAAATGTTGTT+TGG - chr8_2:45301892-45301911 Msa1250110:CDS 25.0%
!! GAGTAATTCAAATGTTGTTT+GGG - chr8_2:45301893-45301912 Msa1250110:CDS 25.0%
! GTTGAAAACAGCTTATAAAT+TGG + chr8_2:45301987-45302006 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG + chr8_2:45302238-45302257 None:intergenic 25.0%
! ACTTAGAAACAGAAAGAAAA+CGG + chr8_2:45302627-45302646 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG - chr8_2:45302672-45302691 Msa1250110:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG - chr8_2:45302673-45302692 Msa1250110:intron 25.0%
! TACAAAATGTTGTTAAACAG+TGG + chr8_2:45302783-45302802 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG + chr8_2:45302874-45302893 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG - chr8_2:45302876-45302895 Msa1250110:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG - chr8_2:45302877-45302896 Msa1250110:intron 25.0%
! AAATTGGAAAAAAAGCTACA+AGG - chr8_2:45303166-45303185 Msa1250110:intron 25.0%
! CAAATCTTCACCTTATAAAT+TGG - chr8_2:45303437-45303456 Msa1250110:intron 25.0%
! AACGTTAATGCTGTATTAAT+TGG - chr8_2:45303485-45303504 Msa1250110:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG - chr8_2:45303558-45303577 Msa1250110:intron 25.0%
! TAGAGAAAGAACAAATCAAT+AGG - chr8_2:45303591-45303610 Msa1250110:intron 25.0%
! AATTTGCAACATCAATTATG+GGG + chr8_2:45303677-45303696 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG + chr8_2:45303678-45303697 None:intergenic 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG - chr8_2:45303736-45303755 Msa1250110:intron 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG + chr8_2:45303784-45303803 None:intergenic 25.0%
!! CGACTTGTTCTTAAATATTA+TGG - chr8_2:45303928-45303947 Msa1250110:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG - chr8_2:45304225-45304244 Msa1250110:intron 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG - chr8_2:45304226-45304245 Msa1250110:intron 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG + chr8_2:45304239-45304258 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG - chr8_2:45304454-45304473 Msa1250110:CDS 25.0%
!!! TTTTATTTTCTTCAGTTGGA+AGG - chr8_2:45304932-45304951 Msa1250110:five_prime_UTR 25.0%
! AATGGTTAAGGTCTTAATTA+AGG - chr8_2:45305089-45305108 Msa1250110:five_prime_UTR 25.0%
CCATGAAAAAGAGAGAAAAA+TGG + chr8_2:45301274-45301293 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG - chr8_2:45301271-45301290 Msa1250110:three_prime_UTR 30.0%
AAGAGACAGAGAAACATAAT+TGG + chr8_2:45301317-45301336 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG + chr8_2:45301340-45301359 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG + chr8_2:45301723-45301742 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG - chr8_2:45301756-45301775 Msa1250110:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG + chr8_2:45302136-45302155 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG + chr8_2:45302284-45302303 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG - chr8_2:45302406-45302425 Msa1250110:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG + chr8_2:45302420-45302439 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG + chr8_2:45302577-45302596 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG + chr8_2:45302871-45302890 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG - chr8_2:45302891-45302910 Msa1250110:CDS 30.0%
! AGCTACAAGGTTTTCTTAAA+TGG - chr8_2:45303179-45303198 Msa1250110:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG + chr8_2:45303252-45303271 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG - chr8_2:45303358-45303377 Msa1250110:intron 30.0%
CCTCACAAAACCAATTTATA+AGG + chr8_2:45303450-45303469 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG - chr8_2:45303447-45303466 Msa1250110:intron 30.0%
AATGCTGTATTAATTGGTTG+AGG - chr8_2:45303491-45303510 Msa1250110:intron 30.0%
ATGCTGTATTAATTGGTTGA+GGG - chr8_2:45303492-45303511 Msa1250110:intron 30.0%
GGAATTTGCAACATCAATTA+TGG + chr8_2:45303679-45303698 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG + chr8_2:45303896-45303915 None:intergenic 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG - chr8_2:45303894-45303913 Msa1250110:intron 30.0%
CAACCTTAAGCTAGAATAAT+AGG + chr8_2:45303900-45303919 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG - chr8_2:45303898-45303917 Msa1250110:intron 30.0%
CTCATAGTTTACTGATATGT+GGG + chr8_2:45303998-45304017 None:intergenic 30.0%
ACTCATAGTTTACTGATATG+TGG + chr8_2:45303999-45304018 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG + chr8_2:45304026-45304045 None:intergenic 30.0%
AAATGATCATTGAACTCTGT+TGG + chr8_2:45304027-45304046 None:intergenic 30.0%
!! TCATCGATTCTCGAAAATAA+GGG + chr8_2:45304370-45304389 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG + chr8_2:45304371-45304390 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG + chr8_2:45304431-45304450 None:intergenic 30.0%
AATTCATGAATGTCTGTTCT+TGG - chr8_2:45304612-45304631 Msa1250110:intron 30.0%
ATATTTGTGTATGACTAGGA+TGG - chr8_2:45304903-45304922 Msa1250110:intron 30.0%
CATGATAAGGTTATAGTTGT+CGG - chr8_2:45305000-45305019 Msa1250110:five_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG - chr8_2:45305077-45305096 Msa1250110:five_prime_UTR 30.0%
ATTAAGACCTTAACCATTCT+TGG + chr8_2:45305087-45305106 None:intergenic 30.0%
CCATGAAAAAGAGAGAAAAA+TGG + chr8_2:45301274-45301293 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG - chr8_2:45301271-45301290 Msa1250110:three_prime_UTR 30.0%
AAGAGACAGAGAAACATAAT+TGG + chr8_2:45301317-45301336 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG + chr8_2:45301340-45301359 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG + chr8_2:45301723-45301742 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG - chr8_2:45301756-45301775 Msa1250110:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG + chr8_2:45302136-45302155 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG + chr8_2:45302284-45302303 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG - chr8_2:45302406-45302425 Msa1250110:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG + chr8_2:45302420-45302439 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG + chr8_2:45302577-45302596 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG + chr8_2:45302871-45302890 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG - chr8_2:45302891-45302910 Msa1250110:CDS 30.0%
! AGCTACAAGGTTTTCTTAAA+TGG - chr8_2:45303179-45303198 Msa1250110:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG + chr8_2:45303252-45303271 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG - chr8_2:45303358-45303377 Msa1250110:intron 30.0%
CCTCACAAAACCAATTTATA+AGG + chr8_2:45303450-45303469 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG - chr8_2:45303447-45303466 Msa1250110:intron 30.0%
AATGCTGTATTAATTGGTTG+AGG - chr8_2:45303491-45303510 Msa1250110:intron 30.0%
ATGCTGTATTAATTGGTTGA+GGG - chr8_2:45303492-45303511 Msa1250110:intron 30.0%
GGAATTTGCAACATCAATTA+TGG + chr8_2:45303679-45303698 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG + chr8_2:45303896-45303915 None:intergenic 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG - chr8_2:45303894-45303913 Msa1250110:intron 30.0%
CAACCTTAAGCTAGAATAAT+AGG + chr8_2:45303900-45303919 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG - chr8_2:45303898-45303917 Msa1250110:intron 30.0%
CTCATAGTTTACTGATATGT+GGG + chr8_2:45303998-45304017 None:intergenic 30.0%
ACTCATAGTTTACTGATATG+TGG + chr8_2:45303999-45304018 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG + chr8_2:45304026-45304045 None:intergenic 30.0%
AAATGATCATTGAACTCTGT+TGG + chr8_2:45304027-45304046 None:intergenic 30.0%
!! TCATCGATTCTCGAAAATAA+GGG + chr8_2:45304370-45304389 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG + chr8_2:45304371-45304390 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG + chr8_2:45304431-45304450 None:intergenic 30.0%
AATTCATGAATGTCTGTTCT+TGG - chr8_2:45304612-45304631 Msa1250110:intron 30.0%
ATATTTGTGTATGACTAGGA+TGG - chr8_2:45304903-45304922 Msa1250110:intron 30.0%
CATGATAAGGTTATAGTTGT+CGG - chr8_2:45305000-45305019 Msa1250110:five_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG - chr8_2:45305077-45305096 Msa1250110:five_prime_UTR 30.0%
ATTAAGACCTTAACCATTCT+TGG + chr8_2:45305087-45305106 None:intergenic 30.0%
! GTAATATTTTCATACCCCAG+TGG - chr8_2:45301093-45301112 Msa1250110:three_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG + chr8_2:45301111-45301130 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG + chr8_2:45301156-45301175 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG + chr8_2:45301237-45301256 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG + chr8_2:45301266-45301285 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG + chr8_2:45301267-45301286 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG - chr8_2:45301645-45301664 Msa1250110:three_prime_UTR 35.0%
ATTCAGAAATGGGATCTGAA+GGG - chr8_2:45301646-45301665 Msa1250110:three_prime_UTR 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG - chr8_2:45301693-45301712 Msa1250110:three_prime_UTR 35.0%
CTCTCTAGTGTCAATTTAGA+TGG + chr8_2:45302137-45302156 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG - chr8_2:45302519-45302538 Msa1250110:intron 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG + chr8_2:45302765-45302784 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG - chr8_2:45302809-45302828 Msa1250110:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG + chr8_2:45302847-45302866 None:intergenic 35.0%
! ACTCAACATCTACCGATTAT+TGG + chr8_2:45302906-45302925 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG + chr8_2:45303005-45303024 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG - chr8_2:45303008-45303027 Msa1250110:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG - chr8_2:45303009-45303028 Msa1250110:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG + chr8_2:45303095-45303114 None:intergenic 35.0%
ACGATATCAGATGCAAAACA+TGG + chr8_2:45303216-45303235 None:intergenic 35.0%
!!! TGGTTTTGTGAGGTTAAGTT+AGG - chr8_2:45303457-45303476 Msa1250110:intron 35.0%
GTCTTATAGACTTGTATGGT+TGG - chr8_2:45303740-45303759 Msa1250110:intron 35.0%
GAACACACGATATTTGATCA+TGG - chr8_2:45303822-45303841 Msa1250110:intron 35.0%
CGATATTTGATCATGGAGTT+CGG - chr8_2:45303829-45303848 Msa1250110:intron 35.0%
TAGTTTACTGATATGTGGGT+AGG + chr8_2:45303994-45304013 None:intergenic 35.0%
AAACCAAAACGAACTTGCAA+AGG - chr8_2:45304082-45304101 Msa1250110:intron 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG + chr8_2:45304088-45304107 None:intergenic 35.0%
GATTTCAAGATTGCATCAAC+AGG + chr8_2:45304217-45304236 None:intergenic 35.0%
TTATGACGTGATGATATCAC+AGG - chr8_2:45304255-45304274 Msa1250110:intron 35.0%
ATGTGTATTACCACTCTCTT+CGG - chr8_2:45304302-45304321 Msa1250110:CDS 35.0%
GATTGCACAGATATATATGC+TGG - chr8_2:45304634-45304653 Msa1250110:intron 35.0%
AGCAAAAATGACACACATGT+TGG - chr8_2:45304725-45304744 Msa1250110:intron 35.0%
!! ATTTTTCCTTGGTGTGCTTA+AGG + chr8_2:45304764-45304783 None:intergenic 35.0%
AAACTGTACTCAACCATACA+AGG + chr8_2:45304861-45304880 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG - chr8_2:45304899-45304918 Msa1250110:intron 35.0%
TTGGAAGGAAGTGGAATATA+AGG - chr8_2:45304947-45304966 Msa1250110:five_prime_UTR 35.0%
TCATGGCATTCACATGTAAA+AGG + chr8_2:45304985-45305004 None:intergenic 35.0%
TACATGTGAATGCCATGATA+AGG - chr8_2:45304987-45305006 Msa1250110:five_prime_UTR 35.0%
CGACAACTATAACCTTATCA+TGG + chr8_2:45305002-45305021 None:intergenic 35.0%
GTCGGTAAAGTTAGCATATA+TGG - chr8_2:45305018-45305037 Msa1250110:five_prime_UTR 35.0%
TGGGAATTATCTTCCAAGAA+TGG - chr8_2:45305071-45305090 Msa1250110:five_prime_UTR 35.0%
! GTAATATTTTCATACCCCAG+TGG - chr8_2:45301093-45301112 Msa1250110:three_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG + chr8_2:45301111-45301130 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG + chr8_2:45301156-45301175 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG + chr8_2:45301237-45301256 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG + chr8_2:45301266-45301285 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG + chr8_2:45301267-45301286 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG - chr8_2:45301645-45301664 Msa1250110:three_prime_UTR 35.0%
ATTCAGAAATGGGATCTGAA+GGG - chr8_2:45301646-45301665 Msa1250110:three_prime_UTR 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG - chr8_2:45301693-45301712 Msa1250110:three_prime_UTR 35.0%
CTCTCTAGTGTCAATTTAGA+TGG + chr8_2:45302137-45302156 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG - chr8_2:45302519-45302538 Msa1250110:intron 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG + chr8_2:45302765-45302784 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG - chr8_2:45302809-45302828 Msa1250110:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG + chr8_2:45302847-45302866 None:intergenic 35.0%
! ACTCAACATCTACCGATTAT+TGG + chr8_2:45302906-45302925 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG + chr8_2:45303005-45303024 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG - chr8_2:45303008-45303027 Msa1250110:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG - chr8_2:45303009-45303028 Msa1250110:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG + chr8_2:45303095-45303114 None:intergenic 35.0%
ACGATATCAGATGCAAAACA+TGG + chr8_2:45303216-45303235 None:intergenic 35.0%
!!! TGGTTTTGTGAGGTTAAGTT+AGG - chr8_2:45303457-45303476 Msa1250110:intron 35.0%
GTCTTATAGACTTGTATGGT+TGG - chr8_2:45303740-45303759 Msa1250110:intron 35.0%
GAACACACGATATTTGATCA+TGG - chr8_2:45303822-45303841 Msa1250110:intron 35.0%
CGATATTTGATCATGGAGTT+CGG - chr8_2:45303829-45303848 Msa1250110:intron 35.0%
TAGTTTACTGATATGTGGGT+AGG + chr8_2:45303994-45304013 None:intergenic 35.0%
AAACCAAAACGAACTTGCAA+AGG - chr8_2:45304082-45304101 Msa1250110:intron 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG + chr8_2:45304088-45304107 None:intergenic 35.0%
GATTTCAAGATTGCATCAAC+AGG + chr8_2:45304217-45304236 None:intergenic 35.0%
TTATGACGTGATGATATCAC+AGG - chr8_2:45304255-45304274 Msa1250110:intron 35.0%
ATGTGTATTACCACTCTCTT+CGG - chr8_2:45304302-45304321 Msa1250110:CDS 35.0%
GATTGCACAGATATATATGC+TGG - chr8_2:45304634-45304653 Msa1250110:intron 35.0%
AGCAAAAATGACACACATGT+TGG - chr8_2:45304725-45304744 Msa1250110:intron 35.0%
!! ATTTTTCCTTGGTGTGCTTA+AGG + chr8_2:45304764-45304783 None:intergenic 35.0%
AAACTGTACTCAACCATACA+AGG + chr8_2:45304861-45304880 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG - chr8_2:45304899-45304918 Msa1250110:intron 35.0%
TTGGAAGGAAGTGGAATATA+AGG - chr8_2:45304947-45304966 Msa1250110:five_prime_UTR 35.0%
TCATGGCATTCACATGTAAA+AGG + chr8_2:45304985-45305004 None:intergenic 35.0%
TACATGTGAATGCCATGATA+AGG - chr8_2:45304987-45305006 Msa1250110:five_prime_UTR 35.0%
CGACAACTATAACCTTATCA+TGG + chr8_2:45305002-45305021 None:intergenic 35.0%
GTCGGTAAAGTTAGCATATA+TGG - chr8_2:45305018-45305037 Msa1250110:five_prime_UTR 35.0%
TGGGAATTATCTTCCAAGAA+TGG - chr8_2:45305071-45305090 Msa1250110:five_prime_UTR 35.0%
GTTTGGATAAAATGCCACTG+GGG + chr8_2:45301110-45301129 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG + chr8_2:45301112-45301131 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG + chr8_2:45301127-45301146 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG - chr8_2:45301768-45301787 Msa1250110:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG - chr8_2:45301803-45301822 Msa1250110:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG + chr8_2:45301862-45301881 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG - chr8_2:45301863-45301882 Msa1250110:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG + chr8_2:45302511-45302530 None:intergenic 40.0%
ACTATAGGACTGTAGCATAG+TGG + chr8_2:45302750-45302769 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG - chr8_2:45303010-45303029 Msa1250110:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG - chr8_2:45303090-45303109 Msa1250110:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG - chr8_2:45303094-45303113 Msa1250110:CDS 40.0%
GCAAGATCATAACTCACTTG+TGG + chr8_2:45303123-45303142 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG - chr8_2:45303686-45303705 Msa1250110:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG - chr8_2:45303693-45303712 Msa1250110:intron 40.0%
CAATCACTTACCACTTTCCA+TGG + chr8_2:45303706-45303725 None:intergenic 40.0%
GTGGTAAGTGATTGCGTTTA+TGG - chr8_2:45303712-45303731 Msa1250110:intron 40.0%
TCAAGGGTAATCTTGCAATC+TGG + chr8_2:45303955-45303974 None:intergenic 40.0%
! GAGATTTACAGCCTCTCTTT+TGG - chr8_2:45304402-45304421 Msa1250110:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG - chr8_2:45304405-45304424 Msa1250110:CDS 40.0%
TACATACACAACCAGATGAC+AGG + chr8_2:45304490-45304509 None:intergenic 40.0%
TGCACAGATATATATGCTGG+TGG - chr8_2:45304637-45304656 Msa1250110:intron 40.0%
! GCATGTGTGACATTTTTCCT+TGG + chr8_2:45304775-45304794 None:intergenic 40.0%
AGGAAAAATGTCACACATGC+TGG - chr8_2:45304775-45304794 Msa1250110:intron 40.0%
ACTGTTGAGTCAACCTTGTA+TGG - chr8_2:45304845-45304864 Msa1250110:intron 40.0%
TTTCTTCAGTTGGAAGGAAG+TGG - chr8_2:45304938-45304957 Msa1250110:five_prime_UTR 40.0%
GTTTGGATAAAATGCCACTG+GGG + chr8_2:45301110-45301129 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG + chr8_2:45301112-45301131 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG + chr8_2:45301127-45301146 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG - chr8_2:45301768-45301787 Msa1250110:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG - chr8_2:45301803-45301822 Msa1250110:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG + chr8_2:45301862-45301881 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG - chr8_2:45301863-45301882 Msa1250110:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG + chr8_2:45302511-45302530 None:intergenic 40.0%
ACTATAGGACTGTAGCATAG+TGG + chr8_2:45302750-45302769 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG - chr8_2:45303010-45303029 Msa1250110:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG - chr8_2:45303090-45303109 Msa1250110:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG - chr8_2:45303094-45303113 Msa1250110:CDS 40.0%
GCAAGATCATAACTCACTTG+TGG + chr8_2:45303123-45303142 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG - chr8_2:45303686-45303705 Msa1250110:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG - chr8_2:45303693-45303712 Msa1250110:intron 40.0%
CAATCACTTACCACTTTCCA+TGG + chr8_2:45303706-45303725 None:intergenic 40.0%
GTGGTAAGTGATTGCGTTTA+TGG - chr8_2:45303712-45303731 Msa1250110:intron 40.0%
TCAAGGGTAATCTTGCAATC+TGG + chr8_2:45303955-45303974 None:intergenic 40.0%
! GAGATTTACAGCCTCTCTTT+TGG - chr8_2:45304402-45304421 Msa1250110:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG - chr8_2:45304405-45304424 Msa1250110:CDS 40.0%
TACATACACAACCAGATGAC+AGG + chr8_2:45304490-45304509 None:intergenic 40.0%
TGCACAGATATATATGCTGG+TGG - chr8_2:45304637-45304656 Msa1250110:intron 40.0%
! GCATGTGTGACATTTTTCCT+TGG + chr8_2:45304775-45304794 None:intergenic 40.0%
AGGAAAAATGTCACACATGC+TGG - chr8_2:45304775-45304794 Msa1250110:intron 40.0%
ACTGTTGAGTCAACCTTGTA+TGG - chr8_2:45304845-45304864 Msa1250110:intron 40.0%
TTTCTTCAGTTGGAAGGAAG+TGG - chr8_2:45304938-45304957 Msa1250110:five_prime_UTR 40.0%
!! CTTCCAGTTGGTGTTACTCT+TGG - chr8_2:45301780-45301799 Msa1250110:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG + chr8_2:45301786-45301805 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG - chr8_2:45301842-45301861 Msa1250110:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG + chr8_2:45301846-45301865 None:intergenic 45.0%
GAATCAAACCTGAGACCTCA+AGG - chr8_2:45302156-45302175 Msa1250110:intron 45.0%
CAATACGCAATTGACAGCAC+TGG + chr8_2:45302702-45302721 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG - chr8_2:45303011-45303030 Msa1250110:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG - chr8_2:45303265-45303284 Msa1250110:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG - chr8_2:45303269-45303288 Msa1250110:intron 45.0%
GAGAAATTCCTCCATCCTCA+AGG + chr8_2:45303283-45303302 None:intergenic 45.0%
AGGAATTTCTCGAACGAGAG+AGG - chr8_2:45303292-45303311 Msa1250110:intron 45.0%
CTTACCACTTTCCATGGCAT+TGG + chr8_2:45303700-45303719 None:intergenic 45.0%
GTTCGCTACAATCACAACCT+TGG - chr8_2:45303764-45303783 Msa1250110:intron 45.0%
! TTCCTTGGTGTGCTTAAGGT+TGG + chr8_2:45304760-45304779 None:intergenic 45.0%
!! CTTCCAGTTGGTGTTACTCT+TGG - chr8_2:45301780-45301799 Msa1250110:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG + chr8_2:45301786-45301805 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG - chr8_2:45301842-45301861 Msa1250110:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG + chr8_2:45301846-45301865 None:intergenic 45.0%
GAATCAAACCTGAGACCTCA+AGG - chr8_2:45302156-45302175 Msa1250110:intron 45.0%
CAATACGCAATTGACAGCAC+TGG + chr8_2:45302702-45302721 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG - chr8_2:45303011-45303030 Msa1250110:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG - chr8_2:45303265-45303284 Msa1250110:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG - chr8_2:45303269-45303288 Msa1250110:intron 45.0%
GAGAAATTCCTCCATCCTCA+AGG + chr8_2:45303283-45303302 None:intergenic 45.0%
AGGAATTTCTCGAACGAGAG+AGG - chr8_2:45303292-45303311 Msa1250110:intron 45.0%
CTTACCACTTTCCATGGCAT+TGG + chr8_2:45303700-45303719 None:intergenic 45.0%
GTTCGCTACAATCACAACCT+TGG - chr8_2:45303764-45303783 Msa1250110:intron 45.0%
! TTCCTTGGTGTGCTTAAGGT+TGG + chr8_2:45304760-45304779 None:intergenic 45.0%
TCTCGTGTGGTTAGTGACAG+CGG + chr8_2:45301053-45301072 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG - chr8_2:45301246-45301265 Msa1250110:three_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG - chr8_2:45301807-45301826 Msa1250110:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG - chr8_2:45301813-45301832 Msa1250110:CDS 50.0%
TCAAACCTGAGACCTCAAGG+AGG - chr8_2:45302159-45302178 Msa1250110:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG + chr8_2:45302193-45302212 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG + chr8_2:45302194-45302213 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG - chr8_2:45302194-45302213 Msa1250110:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_2:45302200-45302219 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_2:45302201-45302220 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_2:45302206-45302225 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG + chr8_2:45302224-45302243 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG + chr8_2:45302225-45302244 None:intergenic 50.0%
GCAGTTATGGCGGCGTTATA+GGG + chr8_2:45302861-45302880 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG + chr8_2:45302862-45302881 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG - chr8_2:45303046-45303065 Msa1250110:intron 50.0%
AAGGTTTGCCATTGAGCGGT+TGG - chr8_2:45303050-45303069 Msa1250110:intron 50.0%
! ATTTGCTGCCAACCGCTCAA+TGG + chr8_2:45303061-45303080 None:intergenic 50.0%
CCTCCATCCTCAAGGACTAT+TGG + chr8_2:45303275-45303294 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG - chr8_2:45303272-45303291 Msa1250110:intron 50.0%
TCGCGTGATCTGTAGCATGT+TGG - chr8_2:45303343-45303362 Msa1250110:intron 50.0%
TCGCTTGAGGTACGGTTCAA+GGG + chr8_2:45303971-45303990 None:intergenic 50.0%
ATATGTGGGTAGGTCGCTTG+AGG + chr8_2:45303984-45304003 None:intergenic 50.0%
GTGATGATATCACAGGACGC+AGG - chr8_2:45304262-45304281 Msa1250110:intron 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG - chr8_2:45304318-45304337 Msa1250110:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG - chr8_2:45304319-45304338 Msa1250110:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG + chr8_2:45304416-45304435 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG + chr8_2:45304484-45304503 None:intergenic 50.0%
GACCAACCTTAAGCACACCA+AGG - chr8_2:45304755-45304774 Msa1250110:intron 50.0%
TCTCGTGTGGTTAGTGACAG+CGG + chr8_2:45301053-45301072 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG - chr8_2:45301246-45301265 Msa1250110:three_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG - chr8_2:45301807-45301826 Msa1250110:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG - chr8_2:45301813-45301832 Msa1250110:CDS 50.0%
TCAAACCTGAGACCTCAAGG+AGG - chr8_2:45302159-45302178 Msa1250110:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG + chr8_2:45302193-45302212 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG + chr8_2:45302194-45302213 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG - chr8_2:45302194-45302213 Msa1250110:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_2:45302200-45302219 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_2:45302201-45302220 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_2:45302206-45302225 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG + chr8_2:45302224-45302243 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG + chr8_2:45302225-45302244 None:intergenic 50.0%
GCAGTTATGGCGGCGTTATA+GGG + chr8_2:45302861-45302880 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG + chr8_2:45302862-45302881 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG - chr8_2:45303046-45303065 Msa1250110:intron 50.0%
AAGGTTTGCCATTGAGCGGT+TGG - chr8_2:45303050-45303069 Msa1250110:intron 50.0%
! ATTTGCTGCCAACCGCTCAA+TGG + chr8_2:45303061-45303080 None:intergenic 50.0%
CCTCCATCCTCAAGGACTAT+TGG + chr8_2:45303275-45303294 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG - chr8_2:45303272-45303291 Msa1250110:intron 50.0%
TCGCGTGATCTGTAGCATGT+TGG - chr8_2:45303343-45303362 Msa1250110:intron 50.0%
TCGCTTGAGGTACGGTTCAA+GGG + chr8_2:45303971-45303990 None:intergenic 50.0%
ATATGTGGGTAGGTCGCTTG+AGG + chr8_2:45303984-45304003 None:intergenic 50.0%
GTGATGATATCACAGGACGC+AGG - chr8_2:45304262-45304281 Msa1250110:intron 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG - chr8_2:45304318-45304337 Msa1250110:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG - chr8_2:45304319-45304338 Msa1250110:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG + chr8_2:45304416-45304435 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG + chr8_2:45304484-45304503 None:intergenic 50.0%
GACCAACCTTAAGCACACCA+AGG - chr8_2:45304755-45304774 Msa1250110:intron 50.0%
CTCGTGTGGTTAGTGACAGC+GGG + chr8_2:45301052-45301071 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG + chr8_2:45301066-45301085 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG - chr8_2:45301063-45301082 Msa1250110:three_prime_UTR 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_2:45302207-45302226 Msa1250110:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_2:45302208-45302227 Msa1250110:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG + chr8_2:45302220-45302239 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG - chr8_2:45303021-45303040 Msa1250110:intron 55.0%
GTCGGAGACGTAGGCACAAT+TGG + chr8_2:45303855-45303874 None:intergenic 55.0%
TACTGCAGCAGCTCTGCAGT+CGG + chr8_2:45303873-45303892 None:intergenic 55.0%
GTCGCTTGAGGTACGGTTCA+AGG + chr8_2:45303972-45303991 None:intergenic 55.0%
TGGGTAGGTCGCTTGAGGTA+CGG + chr8_2:45303979-45303998 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG + chr8_2:45304315-45304334 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG - chr8_2:45304476-45304495 Msa1250110:CDS 55.0%
CTCGTGTGGTTAGTGACAGC+GGG + chr8_2:45301052-45301071 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG + chr8_2:45301066-45301085 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG - chr8_2:45301063-45301082 Msa1250110:three_prime_UTR 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_2:45302207-45302226 Msa1250110:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_2:45302208-45302227 Msa1250110:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG + chr8_2:45302220-45302239 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG - chr8_2:45303021-45303040 Msa1250110:intron 55.0%
GTCGGAGACGTAGGCACAAT+TGG + chr8_2:45303855-45303874 None:intergenic 55.0%
TACTGCAGCAGCTCTGCAGT+CGG + chr8_2:45303873-45303892 None:intergenic 55.0%
GTCGCTTGAGGTACGGTTCA+AGG + chr8_2:45303972-45303991 None:intergenic 55.0%
TGGGTAGGTCGCTTGAGGTA+CGG + chr8_2:45303979-45303998 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG + chr8_2:45304315-45304334 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG - chr8_2:45304476-45304495 Msa1250110:CDS 55.0%
GTGCTCCTCCTTGAGGTCTC+AGG + chr8_2:45302167-45302186 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + chr8_2:45302174-45302193 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_2:45302212-45302231 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG - chr8_2:45302212-45302231 Msa1250110:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG - chr8_2:45303031-45303050 Msa1250110:intron 60.0%
AGCTCTGCAGTCGGAGACGT+AGG + chr8_2:45303864-45303883 None:intergenic 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG + chr8_2:45302167-45302186 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + chr8_2:45302174-45302193 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_2:45302212-45302231 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG - chr8_2:45302212-45302231 Msa1250110:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG - chr8_2:45303031-45303050 Msa1250110:intron 60.0%
AGCTCTGCAGTCGGAGACGT+AGG + chr8_2:45303864-45303883 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 45301049 45305142 45301049 ID=Msa1250110;Name=Msa1250110
chr8_2 mRNA 45301049 45305142 45301049 ID=Msa1250110-mRNA-1;Parent=Msa1250110;Name=Msa1250110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=283|1|1|1|0.75|0.6|5|695|218
chr8_2 exon 45301049 45301986 45301049 ID=Msa1250110-mRNA-1:exon:13721;Parent=Msa1250110-mRNA-1
chr8_2 exon 45302878 45302925 45302878 ID=Msa1250110-mRNA-1:exon:13720;Parent=Msa1250110-mRNA-1
chr8_2 exon 45303066 45303170 45303066 ID=Msa1250110-mRNA-1:exon:13719;Parent=Msa1250110-mRNA-1
chr8_2 exon 45304277 45304601 45304277 ID=Msa1250110-mRNA-1:exon:13718;Parent=Msa1250110-mRNA-1
chr8_2 exon 45304924 45305142 45304924 ID=Msa1250110-mRNA-1:exon:13717;Parent=Msa1250110-mRNA-1
chr8_2 five_prime_UTR 45304924 45305142 45304924 ID=Msa1250110-mRNA-1:five_prime_utr;Parent=Msa1250110-mRNA-1
chr8_2 five_prime_UTR 45304538 45304601 45304538 ID=Msa1250110-mRNA-1:five_prime_utr;Parent=Msa1250110-mRNA-1
chr8_2 CDS 45304277 45304537 45304277 ID=Msa1250110-mRNA-1:cds;Parent=Msa1250110-mRNA-1
chr8_2 CDS 45303066 45303170 45303066 ID=Msa1250110-mRNA-1:cds;Parent=Msa1250110-mRNA-1
chr8_2 CDS 45302878 45302925 45302878 ID=Msa1250110-mRNA-1:cds;Parent=Msa1250110-mRNA-1
chr8_2 CDS 45301744 45301986 45301744 ID=Msa1250110-mRNA-1:cds;Parent=Msa1250110-mRNA-1
chr8_2 three_prime_UTR 45301049 45301743 45301049 ID=Msa1250110-mRNA-1:three_prime_utr;Parent=Msa1250110-mRNA-1
Gene Sequence

>Msa1250110

ATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGATTATTGTTAATAATCTGAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGTGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACAGAGAGTAATTCAAATGTTGTTTGGCTTCACTTGGGGGTGAACAGTGGAGCTGCAAGGTTTGCCATTGAGCGGTTGGCAGCAAATGAAGCTACTTTCCGCTGTTCTGATGAATTAGGATGGCAACCACAACAAGTACCAATAGTCCTTGAGGATGGAGGAATTTCTCGAACGAGAGAGACTTCTCTGCCTGTTGATGCAATCTTGAAATCCTTGAAAAAGGGAAAAGATTATGACGTGATGATATCACAGGACGCAGGACGATTTGTTTGCAATTATGTGTATTACCACTCTCTTCGGTTCGCAGAACAGAAGGGTAACAAGTCTCTATTTGTTCATGTTCCCTTATTTTCGAGAATCGATGAAGAAACTCAGATGAGATTTACAGCCTCTCTTTTGGAGGCCATTGCTTCTGCATGTTAA

Protein sequence

>Msa1250110

MGSEGPKKITIHVTGFKKFQGVPINPTEIIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNSNVVWLHLGVNSGAARFAIERLAANEATFRCSDELGWQPQQVPIVLEDGGISRTRETSLPVDAILKSLKKGKDYDVMISQDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSRIDEETQMRFTASLLEAIASAC*