Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221630 | sp|Q9ZV48|TPS11_ARATH | 66.076 | 790 | 255 | 6 | 61 | 840 | 49 | 835 | 0.0 | 1103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221630 | G7JEA0 | 96.122 | 851 | 23 | 2 | 1 | 847 | 1 | 845 | 0.0 | 1696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032710 | Msa1221630 | 0.827020 | 1.970120e-54 | -8.615850e-47 |
| Msa0033840 | Msa1221630 | -0.829575 | 4.767397e-55 | -8.615850e-47 |
| Msa0043850 | Msa1221630 | 0.824919 | 6.217245e-54 | -8.615850e-47 |
| Msa0069160 | Msa1221630 | 0.803424 | 3.509313e-49 | -8.615850e-47 |
| Msa0090510 | Msa1221630 | 0.842904 | 1.944746e-58 | -8.615850e-47 |
| Msa0632420 | Msa1221630 | 0.816508 | 5.333301e-52 | -8.615850e-47 |
| Msa0651560 | Msa1221630 | 0.807266 | 5.496760e-50 | -8.615850e-47 |
| Msa0693340 | Msa1221630 | -0.804496 | 2.101063e-49 | -8.615850e-47 |
| Msa0697680 | Msa1221630 | 0.815266 | 1.009694e-51 | -8.615850e-47 |
| Msa0709120 | Msa1221630 | 0.832570 | 8.765112e-56 | -8.615850e-47 |
| Msa0735550 | Msa1221630 | 0.806883 | 6.625460e-50 | -8.615850e-47 |
| Msa0796580 | Msa1221630 | -0.814472 | 1.514008e-51 | -8.615850e-47 |
| Msa0798450 | Msa1221630 | 0.811513 | 6.741506e-51 | -8.615850e-47 |
| Msa0832760 | Msa1221630 | 0.805907 | 1.064027e-49 | -8.615850e-47 |
| Msa0137980 | Msa1221630 | 0.824474 | 7.913647e-54 | -8.615850e-47 |
| Msa0139670 | Msa1221630 | 0.831415 | 1.691446e-55 | -8.615850e-47 |
| Msa0183910 | Msa1221630 | 0.832699 | 8.141920e-56 | -8.615850e-47 |
| Msa0213430 | Msa1221630 | 0.804598 | 1.999992e-49 | -8.615850e-47 |
| Msa0220990 | Msa1221630 | 0.814105 | 1.825331e-51 | -8.615850e-47 |
| Msa0224130 | Msa1221630 | 0.810352 | 1.202891e-50 | -8.615850e-47 |
| Msa0382370 | Msa1221630 | 0.801752 | 7.761634e-49 | -8.615850e-47 |
| Msa0265270 | Msa1221630 | 0.805447 | 1.329244e-49 | -8.615850e-47 |
| Msa0312640 | Msa1221630 | 0.822184 | 2.712969e-53 | -8.615850e-47 |
| Msa1221630 | Msa1221960 | 0.893424 | 6.370899e-75 | -8.615850e-47 |
| Msa1221630 | Msa1229480 | 0.801555 | 8.521151e-49 | -8.615850e-47 |
| Msa1221630 | Msa1234620 | 0.827810 | 1.273755e-54 | -8.615850e-47 |
| Msa1221630 | Msa1265020 | 0.899334 | 2.195574e-77 | -8.615850e-47 |
| Msa1221630 | Msa1290900 | 0.807256 | 5.523851e-50 | -8.615850e-47 |
| Msa1221630 | Msa1337850 | 0.941650 | 2.875670e-101 | -8.615850e-47 |
| Msa1221630 | Msa1364080 | 0.802069 | 6.681537e-49 | -8.615850e-47 |
| Msa1221630 | Msa1366390 | 0.811321 | 7.423473e-51 | -8.615850e-47 |
| Msa0545020 | Msa1221630 | 0.803218 | 3.871494e-49 | -8.615850e-47 |
| Msa0592330 | Msa1221630 | 0.823684 | 1.213499e-53 | -8.615850e-47 |
| Msa0934140 | Msa1221630 | 0.813766 | 2.168096e-51 | -8.615850e-47 |
| Msa0969380 | Msa1221630 | 0.821621 | 3.662813e-53 | -8.615850e-47 |
| Msa0969720 | Msa1221630 | 0.817312 | 3.519339e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221630 | MtrunA17_Chr4g0073041 | 96.122 | 851 | 23 | 2 | 1 | 847 | 1 | 845 | 0.0 | 1696 |
| Msa1221630 | MtrunA17_Chr8g0364961 | 62.247 | 792 | 285 | 5 | 61 | 842 | 52 | 839 | 0.0 | 1039 |
| Msa1221630 | MtrunA17_Chr1g0209251 | 60.401 | 798 | 302 | 7 | 54 | 843 | 53 | 844 | 0.0 | 1008 |
| Msa1221630 | MtrunA17_Chr8g0391971 | 58.809 | 806 | 313 | 8 | 49 | 840 | 47 | 847 | 0.0 | 1002 |
| Msa1221630 | MtrunA17_Chr1g0161531 | 59.273 | 798 | 306 | 8 | 61 | 844 | 61 | 853 | 0.0 | 995 |
| Msa1221630 | MtrunA17_Chr4g0041381 | 59.010 | 788 | 307 | 6 | 63 | 840 | 67 | 848 | 0.0 | 980 |
| Msa1221630 | MtrunA17_Chr3g0117891 | 53.581 | 754 | 338 | 6 | 83 | 830 | 5 | 752 | 0.0 | 814 |
| Msa1221630 | MtrunA17_Chr3g0107401 | 46.269 | 603 | 284 | 7 | 64 | 660 | 1 | 569 | 6.98e-172 | 509 |
| Msa1221630 | MtrunA17_Chr8g0359371 | 35.458 | 753 | 427 | 20 | 61 | 793 | 83 | 796 | 8.98e-137 | 429 |
| Msa1221630 | MtrunA17_Chr2g0314621 | 33.686 | 757 | 435 | 20 | 61 | 794 | 122 | 834 | 6.74e-133 | 420 |
| Msa1221630 | MtrunA17_Chr8g0380051 | 40.615 | 325 | 176 | 8 | 60 | 381 | 74 | 384 | 1.84e-69 | 236 |
| Msa1221630 | MtrunA17_Chr8g0380061 | 29.953 | 424 | 249 | 13 | 387 | 794 | 5 | 396 | 1.30e-50 | 186 |
| Msa1221630 | MtrunA17_Chr3g0107421 | 46.893 | 177 | 92 | 1 | 252 | 428 | 1 | 175 | 1.00e-45 | 161 |
| Msa1221630 | MtrunA17_Chr3g0107411 | 43.791 | 153 | 85 | 1 | 445 | 596 | 1 | 153 | 7.98e-40 | 144 |
| Msa1221630 | MtrunA17_Chr3g0116901 | 44.048 | 168 | 84 | 4 | 31 | 191 | 5 | 169 | 2.18e-35 | 132 |
| Msa1221630 | MtrunA17_Chr3g0107431 | 39.316 | 117 | 49 | 3 | 62 | 173 | 10 | 109 | 1.12e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221630 | AT2G18700.1 | 66.076 | 790 | 255 | 6 | 61 | 840 | 49 | 835 | 0.0 | 1103 |
| Msa1221630 | AT1G23870.1 | 57.876 | 857 | 336 | 8 | 1 | 843 | 1 | 846 | 0.0 | 1040 |
| Msa1221630 | AT1G70290.1 | 57.379 | 847 | 339 | 8 | 1 | 837 | 1 | 835 | 0.0 | 1004 |
| Msa1221630 | AT4G17770.1 | 56.471 | 850 | 355 | 7 | 1 | 841 | 1 | 844 | 0.0 | 995 |
| Msa1221630 | AT4G17770.2 | 56.471 | 850 | 355 | 7 | 1 | 841 | 1 | 844 | 0.0 | 995 |
| Msa1221630 | AT1G60140.6 | 58.302 | 801 | 315 | 6 | 51 | 841 | 53 | 844 | 0.0 | 993 |
| Msa1221630 | AT1G60140.1 | 58.302 | 801 | 315 | 6 | 51 | 841 | 53 | 844 | 0.0 | 993 |
| Msa1221630 | AT1G60140.2 | 58.302 | 801 | 315 | 6 | 51 | 841 | 53 | 844 | 0.0 | 993 |
| Msa1221630 | AT1G60140.5 | 58.302 | 801 | 315 | 6 | 51 | 841 | 53 | 844 | 0.0 | 993 |
| Msa1221630 | AT1G60140.4 | 58.302 | 801 | 315 | 6 | 51 | 841 | 53 | 844 | 0.0 | 993 |
| Msa1221630 | AT1G06410.3 | 58.040 | 796 | 313 | 8 | 63 | 847 | 60 | 845 | 0.0 | 976 |
| Msa1221630 | AT1G06410.1 | 58.040 | 796 | 313 | 8 | 63 | 847 | 60 | 845 | 0.0 | 976 |
| Msa1221630 | AT1G06410.2 | 58.040 | 796 | 313 | 8 | 63 | 847 | 60 | 845 | 0.0 | 976 |
| Msa1221630 | AT1G68020.2 | 57.407 | 810 | 314 | 8 | 58 | 840 | 49 | 854 | 0.0 | 971 |
| Msa1221630 | AT1G68020.3 | 57.407 | 810 | 314 | 8 | 58 | 840 | 49 | 854 | 0.0 | 971 |
| Msa1221630 | AT1G70290.2 | 53.129 | 847 | 337 | 9 | 1 | 837 | 1 | 797 | 0.0 | 905 |
| Msa1221630 | AT1G60140.3 | 59.494 | 711 | 273 | 5 | 51 | 755 | 53 | 754 | 0.0 | 899 |
| Msa1221630 | AT1G68020.1 | 57.795 | 635 | 241 | 7 | 58 | 669 | 49 | 679 | 0.0 | 773 |
| Msa1221630 | AT1G78580.4 | 34.656 | 756 | 430 | 20 | 61 | 793 | 91 | 805 | 3.33e-135 | 426 |
| Msa1221630 | AT1G78580.1 | 34.656 | 756 | 430 | 20 | 61 | 793 | 91 | 805 | 3.33e-135 | 426 |
| Msa1221630 | AT1G78580.2 | 34.656 | 756 | 430 | 20 | 61 | 793 | 91 | 805 | 3.33e-135 | 426 |
| Msa1221630 | AT1G78580.3 | 34.656 | 756 | 430 | 20 | 61 | 793 | 91 | 805 | 3.33e-135 | 426 |
| Msa1221630 | AT1G16980.1 | 33.087 | 813 | 473 | 22 | 61 | 845 | 11 | 780 | 4.40e-135 | 422 |
| Msa1221630 | AT4G27550.2 | 31.785 | 818 | 476 | 20 | 61 | 836 | 3 | 780 | 3.29e-127 | 400 |
| Msa1221630 | AT4G27550.1 | 31.624 | 819 | 485 | 20 | 61 | 836 | 3 | 789 | 1.79e-126 | 399 |
| Msa1221630 | AT1G16980.2 | 34.169 | 638 | 363 | 17 | 59 | 682 | 9 | 603 | 2.10e-111 | 355 |
Find 177 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGGGAAGGTTCTGATTT+TGG | 0.120895 | 8_1:+85326102 | Msa1221630:CDS |
| CAAGAAGCAGATCCTGATTT+TGG | 0.199178 | 8_1:+85327386 | Msa1221630:CDS |
| CTTCAATAGGTTGTTTCATT+TGG | 0.210495 | 8_1:+85328185 | Msa1221630:three_prime_UTR |
| AGGCCAATTGTTTGTATAAA+TGG | 0.221539 | 8_1:+85326343 | Msa1221630:CDS |
| ATGATCCTGTAGTAGTTAAA+AGG | 0.228717 | 8_1:+85327459 | Msa1221630:CDS |
| ATTCTTCGTTTACGAGAAAT+TGG | 0.240051 | 8_1:-85325278 | None:intergenic |
| ATATTTGTCATTAACTTCTT+TGG | 0.249338 | 8_1:-85326299 | None:intergenic |
| AATATTGTCGTTGAAACTTC+TGG | 0.252033 | 8_1:-85325232 | None:intergenic |
| TGGAGGGGAATGAGAAATTA+AGG | 0.263134 | 8_1:+85326188 | Msa1221630:CDS |
| CAAGTGTTTGCATGCACTAT+TGG | 0.286479 | 8_1:+85328005 | Msa1221630:CDS |
| TTTGGCATTGAAGAATCTTT+TGG | 0.287438 | 8_1:+85326168 | Msa1221630:CDS |
| TCTTATTATATTATATCATA+TGG | 0.295475 | 8_1:+85324946 | Msa1221630:five_prime_UTR |
| TTCACTCAGCGGGGCGGTTC+GGG | 0.301816 | 8_1:+85326573 | Msa1221630:CDS |
| CTTGTGCCGCAATTGCTTCT+CGG | 0.303934 | 8_1:-85326659 | None:intergenic |
| CTTCAACTCTTTCACCCTCT+TGG | 0.308151 | 8_1:-85326071 | None:intergenic |
| TGCGTTTCAATTCTTCTCAT+TGG | 0.309786 | 8_1:+85325618 | Msa1221630:CDS |
| TTGGATTTGTTCAAAGGTAT+TGG | 0.319105 | 8_1:+85326136 | Msa1221630:CDS |
| AAGTAGGGCTAAATACTATT+TGG | 0.326557 | 8_1:+85328037 | Msa1221630:CDS |
| CTCTCATGATGTAGCGTATT+GGG | 0.327023 | 8_1:+85326702 | Msa1221630:CDS |
| GTTTCTGTAAGCATTATCTT+TGG | 0.328259 | 8_1:+85325552 | Msa1221630:CDS |
| AATTAACAAAGCTCCTAGTT+TGG | 0.333947 | 8_1:+85326933 | Msa1221630:CDS |
| TTCAATAGGTTGTTTCATTT+GGG | 0.341066 | 8_1:+85328186 | Msa1221630:three_prime_UTR |
| GGTTCATGATTATCATCTAA+TGG | 0.341092 | 8_1:+85325718 | Msa1221630:CDS |
| TGATAGATTCCTTCTTCAAT+AGG | 0.341279 | 8_1:+85328172 | Msa1221630:three_prime_UTR |
| TGGAACGGTGTCATCAGTTC+TGG | 0.343013 | 8_1:-85325212 | None:intergenic |
| AAAGAAGTTAATGACAAATA+TGG | 0.343946 | 8_1:+85326301 | Msa1221630:CDS |
| TGGATTTGTTCAAAGGTATT+GGG | 0.345683 | 8_1:+85326137 | Msa1221630:CDS |
| AATACAGTGTTCATTGTTAG+TGG | 0.360290 | 8_1:+85326997 | Msa1221630:CDS |
| ATGCTTTCAAGATCTTGTTT+AGG | 0.372241 | 8_1:+85325110 | Msa1221630:CDS |
| TTTAACTACTACAGGATCAT+TGG | 0.373736 | 8_1:-85327456 | None:intergenic |
| ATCATTGTTTCTGAGTTCAT+TGG | 0.382781 | 8_1:+85326541 | Msa1221630:CDS |
| TAGACAAGGAAGTGTTGAAT+TGG | 0.390593 | 8_1:+85326474 | Msa1221630:CDS |
| AAATACTATTTGGATGATAC+TGG | 0.392235 | 8_1:+85328047 | Msa1221630:CDS |
| GCTTGCCACAGTCCAAAATC+AGG | 0.397022 | 8_1:-85327398 | None:intergenic |
| ATCCTGATGAAGATTATGTT+TGG | 0.404447 | 8_1:+85325696 | Msa1221630:CDS |
| CAAAACCTCGCGAACCTTGT+CGG | 0.407094 | 8_1:-85325672 | None:intergenic |
| CCTAGACATAGAAGAAAATC+TGG | 0.408487 | 8_1:-85327918 | None:intergenic |
| GCAACTTCTTCTTGTTGTGA+TGG | 0.411196 | 8_1:-85325455 | None:intergenic |
| ACTCATGAAATATTGCTGTT+AGG | 0.412723 | 8_1:-85328346 | None:intergenic |
| CTCAAGATATATGTGGGATT+AGG | 0.419772 | 8_1:+85326772 | Msa1221630:CDS |
| CTAAGTATTTCTTCACGAAC+AGG | 0.420112 | 8_1:-85325836 | None:intergenic |
| TCAGTTCTGGAACTATGTTT+AGG | 0.420500 | 8_1:-85325199 | None:intergenic |
| TTGTAGCAGGATGTTGGGTT+TGG | 0.421912 | 8_1:+85325925 | Msa1221630:CDS |
| CAGTGTTCATTGTTAGTGGC+AGG | 0.422219 | 8_1:+85327001 | Msa1221630:CDS |
| CTTGTCGGCAAAGATTCTAT+TGG | 0.423981 | 8_1:-85325657 | None:intergenic |
| GACTGATGGCAGGTGGAGTA+AGG | 0.425232 | 8_1:+85327226 | Msa1221630:intron |
| GGACCATTTATACAAACAAT+TGG | 0.426162 | 8_1:-85326346 | None:intergenic |
| TGCCAATCCGAGAGTCGTCC+AGG | 0.433203 | 8_1:-85327255 | None:intergenic |
| GCCTTCTCCTGAGTCGAAAC+CGG | 0.435832 | 8_1:-85326367 | None:intergenic |
| TGATGGCACCATGATGCCTC+AGG | 0.435835 | 8_1:+85326906 | Msa1221630:CDS |
| AAATAGTATTTAGCCCTACT+TGG | 0.436019 | 8_1:-85328035 | None:intergenic |
| GTCTTGTTGTAGCAGGATGT+TGG | 0.445329 | 8_1:+85325919 | Msa1221630:CDS |
| TTGTTGAACTGTGATTTGAT+TGG | 0.446772 | 8_1:+85325863 | Msa1221630:CDS |
| TGATCCTGTAGTAGTTAAAA+GGG | 0.447623 | 8_1:+85327460 | Msa1221630:CDS |
| GTTGTTCGCCTTCACTCAGC+GGG | 0.449644 | 8_1:+85326563 | Msa1221630:CDS |
| CCACATGGGTCTTCTCGAAT+CGG | 0.450549 | 8_1:+85326027 | Msa1221630:CDS |
| TACATTGGTGTTGATTACTT+TGG | 0.450702 | 8_1:+85325968 | Msa1221630:CDS |
| TTGGAAAATTAATGTAGAAA+AGG | 0.451444 | 8_1:+85327289 | Msa1221630:CDS |
| AGGATTTAGAGAGAGCTTGT+AGG | 0.454660 | 8_1:+85326740 | Msa1221630:CDS |
| CACCCTCTTGGCTGTTTCAG+AGG | 0.454916 | 8_1:-85326059 | None:intergenic |
| TCTTGTTGTAGCAGGATGTT+GGG | 0.455109 | 8_1:+85325920 | Msa1221630:CDS |
| GTATGACAAGGAATGAATAC+AGG | 0.455724 | 8_1:+85328298 | Msa1221630:three_prime_UTR |
| CTGTTCGTGAAGAAATACTT+AGG | 0.456072 | 8_1:+85325837 | Msa1221630:CDS |
| GTGATGAACAATCTGGGTAT+AGG | 0.457022 | 8_1:+85326323 | Msa1221630:CDS |
| AATTGTTTGTATAAATGGTC+CGG | 0.460940 | 8_1:+85326348 | Msa1221630:CDS |
| GATGACTTGGATTTGTTCAA+AGG | 0.461719 | 8_1:+85326130 | Msa1221630:CDS |
| GCTCTCATGATGTAGCGTAT+TGG | 0.467021 | 8_1:+85326701 | Msa1221630:CDS |
| GTTCTGTAGATTTCTGAAGT+AGG | 0.470644 | 8_1:-85325809 | None:intergenic |
| GGATTTAGAGAGAGCTTGTA+GGG | 0.471625 | 8_1:+85326741 | Msa1221630:CDS |
| GAAGAAAGAATTTGAAGGGA+AGG | 0.471883 | 8_1:+85326090 | Msa1221630:CDS |
| AAATATGGTGATGAACAATC+TGG | 0.477180 | 8_1:+85326316 | Msa1221630:CDS |
| TTACGAGAAATTGGTGATGA+AGG | 0.479580 | 8_1:-85325269 | None:intergenic |
| TCCTGATGAAGATTATGTTT+GGG | 0.480347 | 8_1:+85325697 | Msa1221630:CDS |
| CGTTGGTTCGTTAAAATCAC+AGG | 0.480855 | 8_1:+85325421 | Msa1221630:CDS |
| CCCCACAGGAAGAATCTTGA+TGG | 0.481795 | 8_1:-85326002 | None:intergenic |
| TTGTGACTTGAAATTCGAAT+GGG | 0.482906 | 8_1:+85325337 | Msa1221630:CDS |
| TTGGATTATGAGTCTAAAAG+AGG | 0.484605 | 8_1:+85325944 | Msa1221630:CDS |
| CTTGTGACTTGAAATTCGAA+TGG | 0.485275 | 8_1:+85325336 | Msa1221630:CDS |
| ACCCAAACATAATCTTCATC+AGG | 0.489582 | 8_1:-85325698 | None:intergenic |
| TGTTCACCTTGAGAGTATGC+TGG | 0.489913 | 8_1:+85327433 | Msa1221630:CDS |
| AAATGGTCCGGTTTCGACTC+AGG | 0.490258 | 8_1:+85326360 | Msa1221630:CDS |
| TGGTCATGTTATCAGACTGC+TGG | 0.493365 | 8_1:+85328067 | Msa1221630:CDS |
| TGACTTCTCCTCATTCCTCA+TGG | 0.494550 | 8_1:-85327895 | None:intergenic |
| ATTAAGGGGTGAAGTTGTGT+TGG | 0.495890 | 8_1:+85326204 | Msa1221630:CDS |
| AGTTGAAGAAAGAATTTGAA+GGG | 0.498193 | 8_1:+85326086 | Msa1221630:CDS |
| TAAATCCTGATCAAAACTCT+TGG | 0.498362 | 8_1:-85326725 | None:intergenic |
| GTGTTCATTGTTAGTGGCAG+GGG | 0.498938 | 8_1:+85327003 | Msa1221630:CDS |
| AAACGTTTCCTCAAGTAAGT+TGG | 0.499254 | 8_1:-85325746 | None:intergenic |
| GAACTCAGCAATCAAAATGA+AGG | 0.499316 | 8_1:+85326633 | Msa1221630:CDS |
| TGGTGCCATCATAGTCCAAA+AGG | 0.499691 | 8_1:-85326894 | None:intergenic |
| TGTTCGTGAAGAAATACTTA+GGG | 0.500357 | 8_1:+85325838 | Msa1221630:CDS |
| GTAGAGTTTGCCTTAGCGAC+TGG | 0.503290 | 8_1:+85327025 | Msa1221630:CDS |
| GGAGGGGAATGAGAAATTAA+GGG | 0.505727 | 8_1:+85326189 | Msa1221630:CDS |
| AAGTCACAAGAAGCGCGTAT+TGG | 0.516480 | 8_1:-85325323 | None:intergenic |
| CACTTGTGATGTGGTTGGTA+AGG | 0.520338 | 8_1:-85327988 | None:intergenic |
| ATGAAACAACCTATTGAAGA+AGG | 0.522010 | 8_1:-85328181 | None:intergenic |
| TCCCTGGACGACTCTCGGAT+TGG | 0.522159 | 8_1:+85327253 | Msa1221630:CDS |
| GATGAAGCGTTGTTGAGTAA+TGG | 0.528627 | 8_1:-85325002 | None:intergenic |
| GCGTTGTTGAGTAATGGAAA+TGG | 0.533209 | 8_1:-85324996 | None:intergenic |
| ATAGGTTGTTTCATTTGGGA+AGG | 0.533568 | 8_1:+85328190 | Msa1221630:three_prime_UTR |
| GGGCGGTTCGGGTGAATCCG+TGG | 0.535674 | 8_1:+85326584 | Msa1221630:CDS |
| ATTATAGATGAGTGTTGCAA+AGG | 0.536729 | 8_1:-85325027 | None:intergenic |
| TCTTCCTGTGGGGATCCACA+TGG | 0.539623 | 8_1:+85326012 | Msa1221630:CDS |
| GATTCTCCCTGGACGACTCT+CGG | 0.545192 | 8_1:+85327248 | Msa1221630:CDS |
| TTGTGAATGCTGTGAGGGAT+GGG | 0.545495 | 8_1:+85326419 | Msa1221630:CDS |
| ACCATCAAGATTCTTCCTGT+GGG | 0.546402 | 8_1:+85326001 | Msa1221630:CDS |
| GAGTAGCGGAAAAGATATCC+AGG | 0.550385 | 8_1:+85326249 | Msa1221630:CDS |
| GCATTATCTCAAGATATATG+TGG | 0.551844 | 8_1:+85326765 | Msa1221630:CDS |
| CAATAGAATCTTTGCCGACA+AGG | 0.552855 | 8_1:+85325658 | Msa1221630:CDS |
| ATGGAGAAAACCAGTCGCTA+AGG | 0.553868 | 8_1:-85327035 | None:intergenic |
| ATTGGACAAATCACTTGGAG+TGG | 0.554082 | 8_1:+85326492 | Msa1221630:CDS |
| TACCATCAAGATTCTTCCTG+TGG | 0.554669 | 8_1:+85326000 | Msa1221630:CDS |
| CTTCCTGTGGGGATCCACAT+GGG | 0.555318 | 8_1:+85326013 | Msa1221630:CDS |
| CAATCTCAAACTTCACATCC+TGG | 0.558555 | 8_1:-85326267 | None:intergenic |
| CTATTGGTTATAAACCAAGT+AGG | 0.558755 | 8_1:+85328021 | Msa1221630:CDS |
| CTACAAACAATATACTCGTA+AGG | 0.559815 | 8_1:-85326454 | None:intergenic |
| TATTGTTGAAGTAAAACCTC+AGG | 0.563515 | 8_1:+85327490 | Msa1221630:CDS |
| GAGTTGAAGAAAGAATTTGA+AGG | 0.566060 | 8_1:+85326085 | Msa1221630:CDS |
| TGATGAAGGAAGTGAAAGGT+TGG | 0.568415 | 8_1:-85325255 | None:intergenic |
| TCATTGGCTTGCATACAAGA+AGG | 0.571083 | 8_1:+85325634 | Msa1221630:CDS |
| CAGAACATGGTTACTTCACA+AGG | 0.571206 | 8_1:+85327079 | Msa1221630:CDS |
| GTTGAATTGGACAAATCACT+TGG | 0.573251 | 8_1:+85326487 | Msa1221630:CDS |
| AGTGTTCATTGTTAGTGGCA+GGG | 0.574176 | 8_1:+85327002 | Msa1221630:CDS |
| TCCGGTTTCGACTCAGGAGA+AGG | 0.576535 | 8_1:+85326366 | Msa1221630:CDS |
| ATTGTGAATGCTGTGAGGGA+TGG | 0.578772 | 8_1:+85326418 | Msa1221630:CDS |
| TATATCAACCATGAGGAATG+AGG | 0.581492 | 8_1:+85327887 | Msa1221630:CDS |
| TATTGGTTATAAACCAAGTA+GGG | 0.583751 | 8_1:+85328022 | Msa1221630:CDS |
| AGACCCATGTGGATCCCCAC+AGG | 0.588284 | 8_1:-85326016 | None:intergenic |
| AGAGAGATAACATCCAAACT+AGG | 0.589770 | 8_1:-85326946 | None:intergenic |
| AAATCATTGTGAGTTTCAGA+AGG | 0.591816 | 8_1:-85325521 | None:intergenic |
| CGAACCGCCCCGCTGAGTGA+AGG | 0.592523 | 8_1:-85326571 | None:intergenic |
| AGACAAAGCTTCTTAAAACT+AGG | 0.593436 | 8_1:-85326826 | None:intergenic |
| AATATGGTGATGAACAATCT+GGG | 0.594049 | 8_1:+85326317 | Msa1221630:CDS |
| AATTGATCCCTGAGGCATCA+TGG | 0.598853 | 8_1:-85326914 | None:intergenic |
| CTTTGCCGACAAGGTTCGCG+AGG | 0.599029 | 8_1:+85325667 | Msa1221630:CDS |
| AATTAATGTAGAAAAGGTGA+TGG | 0.600049 | 8_1:+85327295 | Msa1221630:CDS |
| GTCCTCTGAAACAGCCAAGA+GGG | 0.604328 | 8_1:+85326057 | Msa1221630:CDS |
| CATTATCTCAAGATATATGT+GGG | 0.605992 | 8_1:+85326766 | Msa1221630:CDS |
| TTCAGATTCTGAATCAAGCA+AGG | 0.606163 | 8_1:+85326227 | Msa1221630:CDS |
| TGTGAGCAAAGGTAAAGTGG+TGG | 0.606477 | 8_1:+85327857 | Msa1221630:CDS |
| GAGTCTAAAAGAGGTTACAT+TGG | 0.608056 | 8_1:+85325953 | Msa1221630:CDS |
| TTGGGTCTCTCTGCAGAACA+TGG | 0.608980 | 8_1:+85327066 | Msa1221630:CDS |
| GGTGGAGTAAGGATTCTCCC+TGG | 0.609902 | 8_1:+85327237 | Msa1221630:intron |
| TGTCGTTGAAACTTCTGGAA+CGG | 0.610383 | 8_1:-85325227 | None:intergenic |
| CTACCTCTGTCAAAGAGTCA+AGG | 0.612948 | 8_1:+85325593 | Msa1221630:CDS |
| ACACCTTGACTCTTTGACAG+AGG | 0.613904 | 8_1:-85325596 | None:intergenic |
| CATTGGCCAGCATACTCTCA+AGG | 0.616590 | 8_1:-85327439 | None:intergenic |
| GAGTATATTGTTTGTAGACA+AGG | 0.617239 | 8_1:+85326460 | Msa1221630:CDS |
| GAGAGACCCAACTTGTCACA+TGG | 0.618405 | 8_1:-85327054 | None:intergenic |
| CTTTACACAGAAGCAACTGA+TGG | 0.620660 | 8_1:+85327320 | Msa1221630:CDS |
| GGGTGTGAGCAAAGGTAAAG+TGG | 0.624595 | 8_1:+85327854 | Msa1221630:intron |
| CTGAATCAAGCAAGGAGTAG+CGG | 0.626177 | 8_1:+85326235 | Msa1221630:CDS |
| ACTTGGAGTGGAAAATGATG+AGG | 0.627192 | 8_1:+85326504 | Msa1221630:CDS |
| GTTCGTGAAGAAATACTTAG+GGG | 0.627972 | 8_1:+85325839 | Msa1221630:CDS |
| GGTAGCATGTAGTGAAACAA+AGG | 0.628237 | 8_1:-85325575 | None:intergenic |
| TTCGCCTTCACTCAGCGGGG+CGG | 0.628380 | 8_1:+85326567 | Msa1221630:CDS |
| AGGATTCCGAGAAGCAATTG+CGG | 0.629661 | 8_1:+85326653 | Msa1221630:CDS |
| GATGGCACCATGATGCCTCA+GGG | 0.629851 | 8_1:+85326907 | Msa1221630:CDS |
| GGTTGTTCGCCTTCACTCAG+CGG | 0.632472 | 8_1:+85326562 | Msa1221630:CDS |
| TTGCATTGTGAATGCTGTGA+GGG | 0.638559 | 8_1:+85326414 | Msa1221630:CDS |
| GAAACATCGTCAATGTTCCA+CGG | 0.640645 | 8_1:-85326601 | None:intergenic |
| CATGTTATCAGACTGCTGGA+AGG | 0.643775 | 8_1:+85328071 | Msa1221630:CDS |
| AGAAGATTATGACTTATGAG+AGG | 0.646211 | 8_1:-85324905 | None:intergenic |
| GAGGGGAATGAGAAATTAAG+GGG | 0.646856 | 8_1:+85326190 | Msa1221630:CDS |
| TTTGGTATCTCTGTAAGCAG+GGG | 0.647241 | 8_1:-85326860 | None:intergenic |
| CCATCAAGATTCTTCCTGTG+GGG | 0.659257 | 8_1:+85326002 | Msa1221630:CDS |
| GCAAACACTTGTGATGTGGT+TGG | 0.661634 | 8_1:-85327993 | None:intergenic |
| GATCCTGTAGTAGTTAAAAG+GGG | 0.670223 | 8_1:+85327461 | Msa1221630:CDS |
| CGTCCTCTGAAACAGCCAAG+AGG | 0.680303 | 8_1:+85326056 | Msa1221630:CDS |
| GAAATGCAGGGTGTGAGCAA+AGG | 0.693831 | 8_1:+85327846 | Msa1221630:intron |
| GCATGCAAACACTTGTGATG+TGG | 0.707983 | 8_1:-85327997 | None:intergenic |
| TTGGTGATGAAGGAAGTGAA+AGG | 0.728881 | 8_1:-85325259 | None:intergenic |
| GTTGCATTGTGAATGCTGTG+AGG | 0.729569 | 8_1:+85326413 | Msa1221630:CDS |
| AAGAGCTTATATCAACCATG+AGG | 0.738943 | 8_1:+85327880 | Msa1221630:CDS |
| GCTTTGTTAATTGATCCCTG+AGG | 0.743258 | 8_1:-85326922 | None:intergenic |
| CCGATTCGAGAAGACCCATG+TGG | 0.743893 | 8_1:-85326027 | None:intergenic |
| TTGTTCGCCTTCACTCAGCG+GGG | 0.757164 | 8_1:+85326564 | Msa1221630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTATTATATTATATCATA+TGG | + | chr8_1:85324946-85324965 | Msa1221630:five_prime_UTR | 10.0% |
| !! | ATTGTTTGAAAATTGAAAAA+AGG | - | chr8_1:85325089-85325108 | None:intergenic | 15.0% |
| !!! | AAAAGTTTAATTTTCATACA+CGG | - | chr8_1:85327797-85327816 | None:intergenic | 15.0% |
| !!! | TTAAACTTTTTCTTTTGTAA+TGG | + | chr8_1:85327807-85327826 | Msa1221630:intron | 15.0% |
| !!! | AAACTTTTCTAACAAAACTT+TGG | - | chr8_1:85325480-85325499 | None:intergenic | 20.0% |
| !! | ATATTTGTCATTAACTTCTT+TGG | - | chr8_1:85326302-85326321 | None:intergenic | 20.0% |
| !! | AAAGAAGTTAATGACAAATA+TGG | + | chr8_1:85326301-85326320 | Msa1221630:CDS | 20.0% |
| !!! | TAATTTTAGAATCATTGCTT+TGG | + | chr8_1:85326801-85326820 | Msa1221630:CDS | 20.0% |
| !!! | TTACTTGTTGATTCATTTTA+TGG | + | chr8_1:85327193-85327212 | Msa1221630:intron | 20.0% |
| !! | TTGGAAAATTAATGTAGAAA+AGG | + | chr8_1:85327289-85327308 | Msa1221630:CDS | 20.0% |
| !! | CGAATAATTAATCTTTCATT+TGG | - | chr8_1:85327578-85327597 | None:intergenic | 20.0% |
| !! | ATATATTTTCAGCTCAAAGA+CGG | + | chr8_1:85325371-85325390 | Msa1221630:CDS | 25.0% |
| !! | ACTCACAATGATTTTTATCA+TGG | + | chr8_1:85325530-85325549 | Msa1221630:CDS | 25.0% |
| ! | AAAAAACCCAATTTCACTTT+AGG | - | chr8_1:85325773-85325792 | None:intergenic | 25.0% |
| ! | AGTTGAAGAAAGAATTTGAA+GGG | + | chr8_1:85326086-85326105 | Msa1221630:CDS | 25.0% |
| ! | AATTGTTTGTATAAATGGTC+CGG | + | chr8_1:85326348-85326367 | Msa1221630:CDS | 25.0% |
| ! | CATTATCTCAAGATATATGT+GGG | + | chr8_1:85326766-85326785 | Msa1221630:CDS | 25.0% |
| !! | ACAATGAACACTGTATTTTT+GGG | - | chr8_1:85326994-85327013 | None:intergenic | 25.0% |
| !! | AACAATGAACACTGTATTTT+TGG | - | chr8_1:85326995-85327014 | None:intergenic | 25.0% |
| ! | AATTAATGTAGAAAAGGTGA+TGG | + | chr8_1:85327295-85327314 | Msa1221630:CDS | 25.0% |
| !! | ACTATCTTTTTCTTCAATGA+AGG | - | chr8_1:85327348-85327367 | None:intergenic | 25.0% |
| ! | TTGTTTATTTATGATACCTG+AGG | - | chr8_1:85327509-85327528 | None:intergenic | 25.0% |
| ! | TATTCGCTTTATGATTTCAT+TGG | + | chr8_1:85327592-85327611 | Msa1221630:intron | 25.0% |
| ! | GTCAATTAGAATTAGAATGA+AGG | + | chr8_1:85327614-85327633 | Msa1221630:intron | 25.0% |
| !!! | TTGTATTTTTGTGAAATGCA+GGG | + | chr8_1:85327834-85327853 | Msa1221630:intron | 25.0% |
| !! | TATTGGTTATAAACCAAGTA+GGG | + | chr8_1:85328022-85328041 | Msa1221630:CDS | 25.0% |
| ! | AAATACTATTTGGATGATAC+TGG | + | chr8_1:85328047-85328066 | Msa1221630:CDS | 25.0% |
| !! | TTCAATAGGTTGTTTCATTT+GGG | + | chr8_1:85328186-85328205 | Msa1221630:three_prime_UTR | 25.0% |
| !!! | ATTTCTTGTTTTGTATGACA+AGG | + | chr8_1:85328286-85328305 | Msa1221630:three_prime_UTR | 25.0% |
| AGAAGATTATGACTTATGAG+AGG | - | chr8_1:85324908-85324927 | None:intergenic | 30.0% | |
| ! | ATTATAGATGAGTGTTGCAA+AGG | - | chr8_1:85325030-85325049 | None:intergenic | 30.0% |
| ! | ATGCTTTCAAGATCTTGTTT+AGG | + | chr8_1:85325110-85325129 | Msa1221630:CDS | 30.0% |
| AATATTGTCGTTGAAACTTC+TGG | - | chr8_1:85325235-85325254 | None:intergenic | 30.0% | |
| ATTCTTCGTTTACGAGAAAT+TGG | - | chr8_1:85325281-85325300 | None:intergenic | 30.0% | |
| TTGTGACTTGAAATTCGAAT+GGG | + | chr8_1:85325337-85325356 | Msa1221630:CDS | 30.0% | |
| !!! | GATTCTGAAATCTTTTACGT+TGG | + | chr8_1:85325404-85325423 | Msa1221630:CDS | 30.0% |
| GTTTCAGAAGGTAAAAAAGT+TGG | - | chr8_1:85325512-85325531 | None:intergenic | 30.0% | |
| AAATCATTGTGAGTTTCAGA+AGG | - | chr8_1:85325524-85325543 | None:intergenic | 30.0% | |
| GTTTCTGTAAGCATTATCTT+TGG | + | chr8_1:85325552-85325571 | Msa1221630:CDS | 30.0% | |
| ATCCTGATGAAGATTATGTT+TGG | + | chr8_1:85325696-85325715 | Msa1221630:CDS | 30.0% | |
| TCCTGATGAAGATTATGTTT+GGG | + | chr8_1:85325697-85325716 | Msa1221630:CDS | 30.0% | |
| GGTTCATGATTATCATCTAA+TGG | + | chr8_1:85325718-85325737 | Msa1221630:CDS | 30.0% | |
| ! | ACGTTTTCCTAAAGTGAAAT+TGG | + | chr8_1:85325763-85325782 | Msa1221630:CDS | 30.0% |
| ! | CGTTTTCCTAAAGTGAAATT+GGG | + | chr8_1:85325764-85325783 | Msa1221630:CDS | 30.0% |
| TGTTCGTGAAGAAATACTTA+GGG | + | chr8_1:85325838-85325857 | Msa1221630:CDS | 30.0% | |
| TTGTTGAACTGTGATTTGAT+TGG | + | chr8_1:85325863-85325882 | Msa1221630:CDS | 30.0% | |
| !!! | ATTTTTTGTCTTGTTGTAGC+AGG | + | chr8_1:85325912-85325931 | Msa1221630:CDS | 30.0% |
| TTGGATTATGAGTCTAAAAG+AGG | + | chr8_1:85325944-85325963 | Msa1221630:CDS | 30.0% | |
| !! | TACATTGGTGTTGATTACTT+TGG | + | chr8_1:85325968-85325987 | Msa1221630:CDS | 30.0% |
| GAGTTGAAGAAAGAATTTGA+AGG | + | chr8_1:85326085-85326104 | Msa1221630:CDS | 30.0% | |
| ! | TTGGATTTGTTCAAAGGTAT+TGG | + | chr8_1:85326136-85326155 | Msa1221630:CDS | 30.0% |
| !! | TGGATTTGTTCAAAGGTATT+GGG | + | chr8_1:85326137-85326156 | Msa1221630:CDS | 30.0% |
| !! | TTTGGCATTGAAGAATCTTT+TGG | + | chr8_1:85326168-85326187 | Msa1221630:CDS | 30.0% |
| ! | AAATATGGTGATGAACAATC+TGG | + | chr8_1:85326316-85326335 | Msa1221630:CDS | 30.0% |
| ! | AATATGGTGATGAACAATCT+GGG | + | chr8_1:85326317-85326336 | Msa1221630:CDS | 30.0% |
| AGGCCAATTGTTTGTATAAA+TGG | + | chr8_1:85326343-85326362 | Msa1221630:CDS | 30.0% | |
| GGACCATTTATACAAACAAT+TGG | - | chr8_1:85326349-85326368 | None:intergenic | 30.0% | |
| CTACAAACAATATACTCGTA+AGG | - | chr8_1:85326457-85326476 | None:intergenic | 30.0% | |
| GAGTATATTGTTTGTAGACA+AGG | + | chr8_1:85326460-85326479 | Msa1221630:CDS | 30.0% | |
| !! | ATCATTGTTTCTGAGTTCAT+TGG | + | chr8_1:85326541-85326560 | Msa1221630:CDS | 30.0% |
| TAAATCCTGATCAAAACTCT+TGG | - | chr8_1:85326728-85326747 | None:intergenic | 30.0% | |
| GCATTATCTCAAGATATATG+TGG | + | chr8_1:85326765-85326784 | Msa1221630:CDS | 30.0% | |
| AGACAAAGCTTCTTAAAACT+AGG | - | chr8_1:85326829-85326848 | None:intergenic | 30.0% | |
| AATTAACAAAGCTCCTAGTT+TGG | + | chr8_1:85326933-85326952 | Msa1221630:CDS | 30.0% | |
| AATACAGTGTTCATTGTTAG+TGG | + | chr8_1:85326997-85327016 | Msa1221630:CDS | 30.0% | |
| TGAAGAAAAAGATAGTGCAA+TGG | + | chr8_1:85327352-85327371 | Msa1221630:CDS | 30.0% | |
| AAAAAGATAGTGCAATGGTT+TGG | + | chr8_1:85327357-85327376 | Msa1221630:CDS | 30.0% | |
| TTTAACTACTACAGGATCAT+TGG | - | chr8_1:85327459-85327478 | None:intergenic | 30.0% | |
| ATGATCCTGTAGTAGTTAAA+AGG | + | chr8_1:85327459-85327478 | Msa1221630:CDS | 30.0% | |
| TGATCCTGTAGTAGTTAAAA+GGG | + | chr8_1:85327460-85327479 | Msa1221630:CDS | 30.0% | |
| TATTGTTGAAGTAAAACCTC+AGG | + | chr8_1:85327490-85327509 | Msa1221630:CDS | 30.0% | |
| !!! | TCCTTTCTTGAGTTTTTTCA+AGG | + | chr8_1:85327669-85327688 | Msa1221630:intron | 30.0% |
| TCCTTGAAAAAACTCAAGAA+AGG | - | chr8_1:85327673-85327692 | None:intergenic | 30.0% | |
| !! | CTTGTATTTTTGTGAAATGC+AGG | + | chr8_1:85327833-85327852 | Msa1221630:intron | 30.0% |
| ! | CTATTGGTTATAAACCAAGT+AGG | + | chr8_1:85328021-85328040 | Msa1221630:CDS | 30.0% |
| AAATAGTATTTAGCCCTACT+TGG | - | chr8_1:85328038-85328057 | None:intergenic | 30.0% | |
| AAGTAGGGCTAAATACTATT+TGG | + | chr8_1:85328037-85328056 | Msa1221630:CDS | 30.0% | |
| TGATAGATTCCTTCTTCAAT+AGG | + | chr8_1:85328172-85328191 | Msa1221630:three_prime_UTR | 30.0% | |
| ATGAAACAACCTATTGAAGA+AGG | - | chr8_1:85328184-85328203 | None:intergenic | 30.0% | |
| ! | CTTCAATAGGTTGTTTCATT+TGG | + | chr8_1:85328185-85328204 | Msa1221630:three_prime_UTR | 30.0% |
| TTTCATTTGGGAAGGAAAAA+AGG | + | chr8_1:85328198-85328217 | Msa1221630:three_prime_UTR | 30.0% | |
| ! | ACTCATGAAATATTGCTGTT+AGG | - | chr8_1:85328349-85328368 | None:intergenic | 30.0% |
| !! | TCAGTTCTGGAACTATGTTT+AGG | - | chr8_1:85325202-85325221 | None:intergenic | 35.0% |
| !! | TTACGAGAAATTGGTGATGA+AGG | - | chr8_1:85325272-85325291 | None:intergenic | 35.0% |
| CTTGTGACTTGAAATTCGAA+TGG | + | chr8_1:85325336-85325355 | Msa1221630:CDS | 35.0% | |
| TGCGTTTCAATTCTTCTCAT+TGG | + | chr8_1:85325618-85325637 | Msa1221630:CDS | 35.0% | |
| ACCCAAACATAATCTTCATC+AGG | - | chr8_1:85325701-85325720 | None:intergenic | 35.0% | |
| !! | TGGTTTTACCAACTTACTTG+AGG | + | chr8_1:85325738-85325757 | Msa1221630:CDS | 35.0% |
| AAACGTTTCCTCAAGTAAGT+TGG | - | chr8_1:85325749-85325768 | None:intergenic | 35.0% | |
| !! | GTTCTGTAGATTTCTGAAGT+AGG | - | chr8_1:85325812-85325831 | None:intergenic | 35.0% |
| CTAAGTATTTCTTCACGAAC+AGG | - | chr8_1:85325839-85325858 | None:intergenic | 35.0% | |
| CTGTTCGTGAAGAAATACTT+AGG | + | chr8_1:85325837-85325856 | Msa1221630:CDS | 35.0% | |
| GTTCGTGAAGAAATACTTAG+GGG | + | chr8_1:85325839-85325858 | Msa1221630:CDS | 35.0% | |
| GAGTCTAAAAGAGGTTACAT+TGG | + | chr8_1:85325953-85325972 | Msa1221630:CDS | 35.0% | |
| GAAGAAAGAATTTGAAGGGA+AGG | + | chr8_1:85326090-85326109 | Msa1221630:CDS | 35.0% | |
| ! | GATGACTTGGATTTGTTCAA+AGG | + | chr8_1:85326130-85326149 | Msa1221630:CDS | 35.0% |
| !!! | AGGTATTGGGTTGAAGTTTT+TGG | + | chr8_1:85326150-85326169 | Msa1221630:CDS | 35.0% |
| ! | GCATTGAAGAATCTTTTGGA+GGG | + | chr8_1:85326172-85326191 | Msa1221630:CDS | 35.0% |
| !! | CATTGAAGAATCTTTTGGAG+GGG | + | chr8_1:85326173-85326192 | Msa1221630:CDS | 35.0% |
| TTCAGATTCTGAATCAAGCA+AGG | + | chr8_1:85326227-85326246 | Msa1221630:CDS | 35.0% | |
| !! | TAGACAAGGAAGTGTTGAAT+TGG | + | chr8_1:85326474-85326493 | Msa1221630:CDS | 35.0% |
| GTTGAATTGGACAAATCACT+TGG | + | chr8_1:85326487-85326506 | Msa1221630:CDS | 35.0% | |
| GAACTCAGCAATCAAAATGA+AGG | + | chr8_1:85326633-85326652 | Msa1221630:CDS | 35.0% | |
| CTCAAGATATATGTGGGATT+AGG | + | chr8_1:85326772-85326791 | Msa1221630:CDS | 35.0% | |
| ! | TTTTGGTATCTCTGTAAGCA+GGG | - | chr8_1:85326864-85326883 | None:intergenic | 35.0% |
| !! | TTTTTGGTATCTCTGTAAGC+AGG | - | chr8_1:85326865-85326884 | None:intergenic | 35.0% |
| CTTACAGAGATACCAAAAAC+AGG | + | chr8_1:85326866-85326885 | Msa1221630:CDS | 35.0% | |
| ! | CAAAAGGATCAACCTGTTTT+TGG | - | chr8_1:85326881-85326900 | None:intergenic | 35.0% |
| !!! | CAAAAACAGGTTGATCCTTT+TGG | + | chr8_1:85326879-85326898 | Msa1221630:CDS | 35.0% |
| ! | TTGATCCTTTTGGACTATGA+TGG | + | chr8_1:85326889-85326908 | Msa1221630:CDS | 35.0% |
| AGAGAGATAACATCCAAACT+AGG | - | chr8_1:85326949-85326968 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGGATCACTGCATA+AGG | - | chr8_1:85326980-85326999 | None:intergenic | 35.0% |
| ! | TTTTCTCCATGTGACAAGTT+GGG | + | chr8_1:85327048-85327067 | Msa1221630:CDS | 35.0% |
| TCATCAATGTTGCATGATCT+CGG | + | chr8_1:85327162-85327181 | Msa1221630:intron | 35.0% | |
| !! | ATGGATTCCTTTTTGACTGA+TGG | + | chr8_1:85327212-85327231 | Msa1221630:intron | 35.0% |
| !! | GATTGGCATCAGATTTTGAT+TGG | + | chr8_1:85327270-85327289 | Msa1221630:CDS | 35.0% |
| GATCCTGTAGTAGTTAAAAG+GGG | + | chr8_1:85327461-85327480 | Msa1221630:CDS | 35.0% | |
| AAGAGCTTATATCAACCATG+AGG | + | chr8_1:85327880-85327899 | Msa1221630:CDS | 35.0% | |
| TATATCAACCATGAGGAATG+AGG | + | chr8_1:85327887-85327906 | Msa1221630:CDS | 35.0% | |
| CCTAGACATAGAAGAAAATC+TGG | - | chr8_1:85327921-85327940 | None:intergenic | 35.0% | |
| ! | CCAGATTTTCTTCTATGTCT+AGG | + | chr8_1:85327918-85327937 | Msa1221630:CDS | 35.0% |
| ! | ATAGGTTGTTTCATTTGGGA+AGG | + | chr8_1:85328190-85328209 | Msa1221630:three_prime_UTR | 35.0% |
| GTATGACAAGGAATGAATAC+AGG | + | chr8_1:85328298-85328317 | Msa1221630:three_prime_UTR | 35.0% | |
| ! | GCGTTGTTGAGTAATGGAAA+TGG | - | chr8_1:85324999-85325018 | None:intergenic | 40.0% |
| !! | GATGAAGCGTTGTTGAGTAA+TGG | - | chr8_1:85325005-85325024 | None:intergenic | 40.0% |
| !! | GGTGAAGTGTTTTATGTGAG+TGG | - | chr8_1:85325068-85325087 | None:intergenic | 40.0% |
| ! | TGTCGTTGAAACTTCTGGAA+CGG | - | chr8_1:85325230-85325249 | None:intergenic | 40.0% |
| TGATGAAGGAAGTGAAAGGT+TGG | - | chr8_1:85325258-85325277 | None:intergenic | 40.0% | |
| !! | TTGGTGATGAAGGAAGTGAA+AGG | - | chr8_1:85325262-85325281 | None:intergenic | 40.0% |
| !! | CGTTGGTTCGTTAAAATCAC+AGG | + | chr8_1:85325421-85325440 | Msa1221630:CDS | 40.0% |
| ! | GCAACTTCTTCTTGTTGTGA+TGG | - | chr8_1:85325458-85325477 | None:intergenic | 40.0% |
| GGTAGCATGTAGTGAAACAA+AGG | - | chr8_1:85325578-85325597 | None:intergenic | 40.0% | |
| !! | TCATTGGCTTGCATACAAGA+AGG | + | chr8_1:85325634-85325653 | Msa1221630:CDS | 40.0% |
| CTTGTCGGCAAAGATTCTAT+TGG | - | chr8_1:85325660-85325679 | None:intergenic | 40.0% | |
| CAATAGAATCTTTGCCGACA+AGG | + | chr8_1:85325658-85325677 | Msa1221630:CDS | 40.0% | |
| ! | TCTTGTTGTAGCAGGATGTT+GGG | + | chr8_1:85325920-85325939 | Msa1221630:CDS | 40.0% |
| TACCATCAAGATTCTTCCTG+TGG | + | chr8_1:85326000-85326019 | Msa1221630:CDS | 40.0% | |
| ACCATCAAGATTCTTCCTGT+GGG | + | chr8_1:85326001-85326020 | Msa1221630:CDS | 40.0% | |
| !! | TGAAGGGAAGGTTCTGATTT+TGG | + | chr8_1:85326102-85326121 | Msa1221630:CDS | 40.0% |
| !! | GAAGGGAAGGTTCTGATTTT+GGG | + | chr8_1:85326103-85326122 | Msa1221630:CDS | 40.0% |
| !! | AAGGGAAGGTTCTGATTTTG+GGG | + | chr8_1:85326104-85326123 | Msa1221630:CDS | 40.0% |
| !! | GGCATTGAAGAATCTTTTGG+AGG | + | chr8_1:85326171-85326190 | Msa1221630:CDS | 40.0% |
| TGGAGGGGAATGAGAAATTA+AGG | + | chr8_1:85326188-85326207 | Msa1221630:CDS | 40.0% | |
| GGAGGGGAATGAGAAATTAA+GGG | + | chr8_1:85326189-85326208 | Msa1221630:CDS | 40.0% | |
| GAGGGGAATGAGAAATTAAG+GGG | + | chr8_1:85326190-85326209 | Msa1221630:CDS | 40.0% | |
| ATTAAGGGGTGAAGTTGTGT+TGG | + | chr8_1:85326204-85326223 | Msa1221630:CDS | 40.0% | |
| CAATCTCAAACTTCACATCC+TGG | - | chr8_1:85326270-85326289 | None:intergenic | 40.0% | |
| GTGATGAACAATCTGGGTAT+AGG | + | chr8_1:85326323-85326342 | Msa1221630:CDS | 40.0% | |
| TTGCATTGTGAATGCTGTGA+GGG | + | chr8_1:85326414-85326433 | Msa1221630:CDS | 40.0% | |
| ATTGGACAAATCACTTGGAG+TGG | + | chr8_1:85326492-85326511 | Msa1221630:CDS | 40.0% | |
| ACTTGGAGTGGAAAATGATG+AGG | + | chr8_1:85326504-85326523 | Msa1221630:CDS | 40.0% | |
| GAAACATCGTCAATGTTCCA+CGG | - | chr8_1:85326604-85326623 | None:intergenic | 40.0% | |
| CTCTCATGATGTAGCGTATT+GGG | + | chr8_1:85326702-85326721 | Msa1221630:CDS | 40.0% | |
| AGGATTTAGAGAGAGCTTGT+AGG | + | chr8_1:85326740-85326759 | Msa1221630:CDS | 40.0% | |
| GGATTTAGAGAGAGCTTGTA+GGG | + | chr8_1:85326741-85326760 | Msa1221630:CDS | 40.0% | |
| TTTGGTATCTCTGTAAGCAG+GGG | - | chr8_1:85326863-85326882 | None:intergenic | 40.0% | |
| ! | GCTTTGTTAATTGATCCCTG+AGG | - | chr8_1:85326925-85326944 | None:intergenic | 40.0% |
| AGTGTTCATTGTTAGTGGCA+GGG | + | chr8_1:85327002-85327021 | Msa1221630:CDS | 40.0% | |
| ! | GTTTTCTCCATGTGACAAGT+TGG | + | chr8_1:85327047-85327066 | Msa1221630:CDS | 40.0% |
| CAGAACATGGTTACTTCACA+AGG | + | chr8_1:85327079-85327098 | Msa1221630:CDS | 40.0% | |
| !! | ATTCCTTTTTGACTGATGGC+AGG | + | chr8_1:85327216-85327235 | Msa1221630:intron | 40.0% |
| CTTTACACAGAAGCAACTGA+TGG | + | chr8_1:85327320-85327339 | Msa1221630:CDS | 40.0% | |
| ! | CAAGAAGCAGATCCTGATTT+TGG | + | chr8_1:85327386-85327405 | Msa1221630:CDS | 40.0% |
| !! | TGTCCCCTTTTAACTACTAC+AGG | - | chr8_1:85327467-85327486 | None:intergenic | 40.0% |
| CAAGTGTTTGCATGCACTAT+TGG | + | chr8_1:85328005-85328024 | Msa1221630:CDS | 40.0% | |
| ! | AAGTCACAAGAAGCGCGTAT+TGG | - | chr8_1:85325326-85325345 | None:intergenic | 45.0% |
| CTACCTCTGTCAAAGAGTCA+AGG | + | chr8_1:85325593-85325612 | Msa1221630:CDS | 45.0% | |
| ACACCTTGACTCTTTGACAG+AGG | - | chr8_1:85325599-85325618 | None:intergenic | 45.0% | |
| ! | GTCTTGTTGTAGCAGGATGT+TGG | + | chr8_1:85325919-85325938 | Msa1221630:CDS | 45.0% |
| TTGTAGCAGGATGTTGGGTT+TGG | + | chr8_1:85325925-85325944 | Msa1221630:CDS | 45.0% | |
| CCATCAAGATTCTTCCTGTG+GGG | + | chr8_1:85326002-85326021 | Msa1221630:CDS | 45.0% | |
| CTTCAACTCTTTCACCCTCT+TGG | - | chr8_1:85326074-85326093 | None:intergenic | 45.0% | |
| !! | AGGGAAGGTTCTGATTTTGG+GGG | + | chr8_1:85326105-85326124 | Msa1221630:CDS | 45.0% |
| !!! | GATTTTGGGGGTTGATGACT+TGG | + | chr8_1:85326117-85326136 | Msa1221630:CDS | 45.0% |
| CTGAATCAAGCAAGGAGTAG+CGG | + | chr8_1:85326235-85326254 | Msa1221630:CDS | 45.0% | |
| ! | GAGTAGCGGAAAAGATATCC+AGG | + | chr8_1:85326249-85326268 | Msa1221630:CDS | 45.0% |
| GTTGCATTGTGAATGCTGTG+AGG | + | chr8_1:85326413-85326432 | Msa1221630:CDS | 45.0% | |
| ATTGTGAATGCTGTGAGGGA+TGG | + | chr8_1:85326418-85326437 | Msa1221630:CDS | 45.0% | |
| TTGTGAATGCTGTGAGGGAT+GGG | + | chr8_1:85326419-85326438 | Msa1221630:CDS | 45.0% | |
| AGGATTCCGAGAAGCAATTG+CGG | + | chr8_1:85326653-85326672 | Msa1221630:CDS | 45.0% | |
| GCTCTCATGATGTAGCGTAT+TGG | + | chr8_1:85326701-85326720 | Msa1221630:CDS | 45.0% | |
| !! | TTGGGCCAAGAGTTTTGATC+AGG | + | chr8_1:85326720-85326739 | Msa1221630:CDS | 45.0% |
| !! | TGGTGCCATCATAGTCCAAA+AGG | - | chr8_1:85326897-85326916 | None:intergenic | 45.0% |
| ! | AATTGATCCCTGAGGCATCA+TGG | - | chr8_1:85326917-85326936 | None:intergenic | 45.0% |
| CAGTGTTCATTGTTAGTGGC+AGG | + | chr8_1:85327001-85327020 | Msa1221630:CDS | 45.0% | |
| GTGTTCATTGTTAGTGGCAG+GGG | + | chr8_1:85327003-85327022 | Msa1221630:CDS | 45.0% | |
| ATGGAGAAAACCAGTCGCTA+AGG | - | chr8_1:85327038-85327057 | None:intergenic | 45.0% | |
| ! | CAGATCCTGATTTTGGACTG+TGG | + | chr8_1:85327393-85327412 | Msa1221630:CDS | 45.0% |
| ! | TGTTCACCTTGAGAGTATGC+TGG | + | chr8_1:85327433-85327452 | Msa1221630:CDS | 45.0% |
| TGTGAGCAAAGGTAAAGTGG+TGG | + | chr8_1:85327857-85327876 | Msa1221630:CDS | 45.0% | |
| TGACTTCTCCTCATTCCTCA+TGG | - | chr8_1:85327898-85327917 | None:intergenic | 45.0% | |
| ! | CACTTGTGATGTGGTTGGTA+AGG | - | chr8_1:85327991-85328010 | None:intergenic | 45.0% |
| GCAAACACTTGTGATGTGGT+TGG | - | chr8_1:85327996-85328015 | None:intergenic | 45.0% | |
| GCATGCAAACACTTGTGATG+TGG | - | chr8_1:85328000-85328019 | None:intergenic | 45.0% | |
| TGGTCATGTTATCAGACTGC+TGG | + | chr8_1:85328067-85328086 | Msa1221630:CDS | 45.0% | |
| CATGTTATCAGACTGCTGGA+AGG | + | chr8_1:85328071-85328090 | Msa1221630:CDS | 45.0% | |
| !! | TGGAACGGTGTCATCAGTTC+TGG | - | chr8_1:85325215-85325234 | None:intergenic | 50.0% |
| CAAAACCTCGCGAACCTTGT+CGG | - | chr8_1:85325675-85325694 | None:intergenic | 50.0% | |
| CCCCACAGGAAGAATCTTGA+TGG | - | chr8_1:85326005-85326024 | None:intergenic | 50.0% | |
| CCACATGGGTCTTCTCGAAT+CGG | + | chr8_1:85326027-85326046 | Msa1221630:CDS | 50.0% | |
| !! | GTCCTCTGAAACAGCCAAGA+GGG | + | chr8_1:85326057-85326076 | Msa1221630:CDS | 50.0% |
| AAATGGTCCGGTTTCGACTC+AGG | + | chr8_1:85326360-85326379 | Msa1221630:CDS | 50.0% | |
| CTTGTGCCGCAATTGCTTCT+CGG | - | chr8_1:85326662-85326681 | None:intergenic | 50.0% | |
| GTAGAGTTTGCCTTAGCGAC+TGG | + | chr8_1:85327025-85327044 | Msa1221630:CDS | 50.0% | |
| GAGAGACCCAACTTGTCACA+TGG | - | chr8_1:85327057-85327076 | None:intergenic | 50.0% | |
| TTGGGTCTCTCTGCAGAACA+TGG | + | chr8_1:85327066-85327085 | Msa1221630:CDS | 50.0% | |
| CCACCTGCCATCAGTCAAAA+AGG | - | chr8_1:85327222-85327241 | None:intergenic | 50.0% | |
| !! | CCTTTTTGACTGATGGCAGG+TGG | + | chr8_1:85327219-85327238 | Msa1221630:intron | 50.0% |
| GCTTGCCACAGTCCAAAATC+AGG | - | chr8_1:85327401-85327420 | None:intergenic | 50.0% | |
| CATTGGCCAGCATACTCTCA+AGG | - | chr8_1:85327442-85327461 | None:intergenic | 50.0% | |
| GAAATGCAGGGTGTGAGCAA+AGG | + | chr8_1:85327846-85327865 | Msa1221630:intron | 50.0% | |
| GGGTGTGAGCAAAGGTAAAG+TGG | + | chr8_1:85327854-85327873 | Msa1221630:intron | 50.0% | |
| TCTTCCTGTGGGGATCCACA+TGG | + | chr8_1:85326012-85326031 | Msa1221630:CDS | 55.0% | |
| CTTCCTGTGGGGATCCACAT+GGG | + | chr8_1:85326013-85326032 | Msa1221630:CDS | 55.0% | |
| ! | CCGATTCGAGAAGACCCATG+TGG | - | chr8_1:85326030-85326049 | None:intergenic | 55.0% |
| !! | CGTCCTCTGAAACAGCCAAG+AGG | + | chr8_1:85326056-85326075 | Msa1221630:CDS | 55.0% |
| ! | CACCCTCTTGGCTGTTTCAG+AGG | - | chr8_1:85326062-85326081 | None:intergenic | 55.0% |
| TCCGGTTTCGACTCAGGAGA+AGG | + | chr8_1:85326366-85326385 | Msa1221630:CDS | 55.0% | |
| GCCTTCTCCTGAGTCGAAAC+CGG | - | chr8_1:85326370-85326389 | None:intergenic | 55.0% | |
| GGTTGTTCGCCTTCACTCAG+CGG | + | chr8_1:85326562-85326581 | Msa1221630:CDS | 55.0% | |
| GTTGTTCGCCTTCACTCAGC+GGG | + | chr8_1:85326563-85326582 | Msa1221630:CDS | 55.0% | |
| TTGTTCGCCTTCACTCAGCG+GGG | + | chr8_1:85326564-85326583 | Msa1221630:CDS | 55.0% | |
| TGATGGCACCATGATGCCTC+AGG | + | chr8_1:85326906-85326925 | Msa1221630:CDS | 55.0% | |
| GATGGCACCATGATGCCTCA+GGG | + | chr8_1:85326907-85326926 | Msa1221630:CDS | 55.0% | |
| GACTGATGGCAGGTGGAGTA+AGG | + | chr8_1:85327226-85327245 | Msa1221630:intron | 55.0% | |
| GGTGGAGTAAGGATTCTCCC+TGG | + | chr8_1:85327237-85327256 | Msa1221630:intron | 55.0% | |
| GATTCTCCCTGGACGACTCT+CGG | + | chr8_1:85327248-85327267 | Msa1221630:CDS | 55.0% | |
| CTTTGCCGACAAGGTTCGCG+AGG | + | chr8_1:85325667-85325686 | Msa1221630:CDS | 60.0% | |
| AGACCCATGTGGATCCCCAC+AGG | - | chr8_1:85326019-85326038 | None:intergenic | 60.0% | |
| TCCCTGGACGACTCTCGGAT+TGG | + | chr8_1:85327253-85327272 | Msa1221630:CDS | 60.0% | |
| GCCAATCCGAGAGTCGTCCA+GGG | - | chr8_1:85327257-85327276 | None:intergenic | 60.0% | |
| TGCCAATCCGAGAGTCGTCC+AGG | - | chr8_1:85327258-85327277 | None:intergenic | 60.0% | |
| TTCGCCTTCACTCAGCGGGG+CGG | + | chr8_1:85326567-85326586 | Msa1221630:CDS | 65.0% | |
| CTTCACTCAGCGGGGCGGTT+CGG | + | chr8_1:85326572-85326591 | Msa1221630:CDS | 65.0% | |
| TTCACTCAGCGGGGCGGTTC+GGG | + | chr8_1:85326573-85326592 | Msa1221630:CDS | 65.0% | |
| CGAACCGCCCCGCTGAGTGA+AGG | - | chr8_1:85326574-85326593 | None:intergenic | 70.0% | |
| ! | GGGCGGTTCGGGTGAATCCG+TGG | + | chr8_1:85326584-85326603 | Msa1221630:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 85324853 | 85328374 | 85324853 | ID=Msa1221630;Name=Msa1221630 |
| chr8_1 | mRNA | 85324853 | 85328374 | 85324853 | ID=Msa1221630-mRNA-1;Parent=Msa1221630;Name=Msa1221630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=257|1|1|1|1|1|3|241|847 |
| chr8_1 | exon | 85324853 | 85327100 | 85324853 | ID=Msa1221630-mRNA-1:exon:30698;Parent=Msa1221630-mRNA-1 |
| chr8_1 | exon | 85327238 | 85327511 | 85327238 | ID=Msa1221630-mRNA-1:exon:30699;Parent=Msa1221630-mRNA-1 |
| chr8_1 | exon | 85327855 | 85328374 | 85327855 | ID=Msa1221630-mRNA-1:exon:30700;Parent=Msa1221630-mRNA-1 |
| chr8_1 | five_prime_UTR | 85324853 | 85325109 | 85324853 | ID=Msa1221630-mRNA-1:five_prime_utr;Parent=Msa1221630-mRNA-1 |
| chr8_1 | CDS | 85325110 | 85327100 | 85325110 | ID=Msa1221630-mRNA-1:cds;Parent=Msa1221630-mRNA-1 |
| chr8_1 | CDS | 85327238 | 85327511 | 85327238 | ID=Msa1221630-mRNA-1:cds;Parent=Msa1221630-mRNA-1 |
| chr8_1 | CDS | 85327855 | 85328133 | 85327855 | ID=Msa1221630-mRNA-1:cds;Parent=Msa1221630-mRNA-1 |
| chr8_1 | three_prime_UTR | 85328134 | 85328374 | 85328134 | ID=Msa1221630-mRNA-1:three_prime_utr;Parent=Msa1221630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
