Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098240 | XP_013465928.1 | 96.727 | 550 | 15 | 2 | 1 | 549 | 1 | 548 | 0.0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098240 | sp|Q8VY07|EPN1_ARATH | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098240 | A0A072VD74 | 96.727 | 550 | 15 | 2 | 1 | 549 | 1 | 548 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017730 | Msa0098240 | 0.883810 | 3.273217e-71 | -8.615850e-47 |
| Msa0072440 | Msa0098240 | 0.804866 | 1.758554e-49 | -8.615850e-47 |
| Msa0098240 | Msa0219280 | 0.802026 | 6.818854e-49 | -8.615850e-47 |
| Msa0098240 | Msa0237300 | 0.807377 | 5.206427e-50 | -8.615850e-47 |
| Msa0098240 | Msa0274720 | 0.805711 | 1.169860e-49 | -8.615850e-47 |
| Msa0098240 | Msa0298400 | 0.802426 | 5.642340e-49 | -8.615850e-47 |
| Msa0098240 | Msa0307380 | 0.811501 | 6.782980e-51 | -8.615850e-47 |
| Msa0098240 | Msa0315520 | 0.820097 | 8.212871e-53 | -8.615850e-47 |
| Msa0098240 | Msa0376860 | 0.818521 | 1.876971e-52 | -8.615850e-47 |
| Msa0098240 | Msa0377820 | 0.821315 | 4.311293e-53 | -8.615850e-47 |
| Msa0098240 | Msa0383930 | 0.808365 | 3.210435e-50 | -8.615850e-47 |
| Msa0098240 | Msa0384590 | 0.844086 | 9.396204e-59 | -8.615850e-47 |
| Msa0098240 | Msa0388210 | 0.820549 | 6.468955e-53 | -8.615850e-47 |
| Msa0098240 | Msa0425380 | 0.810968 | 8.852536e-51 | -8.615850e-47 |
| Msa0098240 | Msa0434370 | 0.804575 | 2.022541e-49 | -8.615850e-47 |
| Msa0098240 | Msa0434660 | 0.831849 | 1.321949e-55 | -8.615850e-47 |
| Msa0098240 | Msa0439960 | 0.815490 | 9.003539e-52 | -8.615850e-47 |
| Msa0098240 | Msa0472930 | 0.828572 | 8.346726e-55 | -8.615850e-47 |
| Msa0098240 | Msa0474720 | 0.804759 | 1.851813e-49 | -8.615850e-47 |
| Msa0098240 | Msa0478130 | 0.824274 | 8.819761e-54 | -8.615850e-47 |
| Msa0098240 | Msa0478190 | 0.849325 | 3.477000e-60 | -8.615850e-47 |
| Msa0098240 | Msa0478430 | 0.817368 | 3.418858e-52 | -8.615850e-47 |
| Msa0098240 | Msa0522540 | 0.838279 | 3.160393e-57 | -8.615850e-47 |
| Msa0098240 | Msa0566940 | -0.831080 | 2.043841e-55 | -8.615850e-47 |
| Msa0098240 | Msa0577690 | 0.811251 | 7.684958e-51 | -8.615850e-47 |
| Msa0098240 | Msa0579080 | 0.848599 | 5.529740e-60 | -8.615850e-47 |
| Msa0098240 | Msa0579160 | 0.842669 | 2.245906e-58 | -8.615850e-47 |
| Msa0098240 | Msa0579220 | 0.841894 | 3.602157e-58 | -8.615850e-47 |
| Msa0098240 | Msa0610690 | 0.822151 | 2.761746e-53 | -8.615850e-47 |
| Msa0098240 | Msa0660150 | 0.833624 | 4.792057e-56 | -8.615850e-47 |
| Msa0098240 | Msa0712860 | 0.800779 | 1.227927e-48 | -8.615850e-47 |
| Msa0098240 | Msa0721930 | 0.820175 | 7.881582e-53 | -8.615850e-47 |
| Msa0098240 | Msa0762930 | 0.818541 | 1.857328e-52 | -8.615850e-47 |
| Msa0098240 | Msa0800480 | 0.803551 | 3.302669e-49 | -8.615850e-47 |
| Msa0098240 | Msa0805390 | 0.857785 | 1.288544e-62 | -8.615850e-47 |
| Msa0098240 | Msa0842750 | 0.810773 | 9.755917e-51 | -8.615850e-47 |
| Msa0098240 | Msa0964020 | 0.816017 | 6.867215e-52 | -8.615850e-47 |
| Msa0098240 | Msa1032470 | 0.820128 | 8.076390e-53 | -8.615850e-47 |
| Msa0098240 | Msa1039100 | 0.811291 | 7.536509e-51 | -8.615850e-47 |
| Msa0098240 | Msa1083700 | 0.831360 | 1.744710e-55 | -8.615850e-47 |
| Msa0098240 | Msa1197720 | 0.869465 | 3.034009e-66 | -8.615850e-47 |
| Msa0098240 | Msa1212830 | 0.832444 | 9.418625e-56 | -8.615850e-47 |
| Msa0098240 | Msa1213040 | 0.830472 | 2.880932e-55 | -8.615850e-47 |
| Msa0098240 | Msa1251410 | 0.900788 | 5.160542e-78 | -8.615850e-47 |
| Msa0098240 | Msa1260220 | 0.841750 | 3.930728e-58 | -8.615850e-47 |
| Msa0098240 | Msa1292020 | 0.803311 | 3.704383e-49 | -8.615850e-47 |
| Msa0098240 | Msa1381260 | 0.836519 | 8.925274e-57 | -8.615850e-47 |
| Msa0098240 | Msa1397070 | 0.813979 | 1.945153e-51 | -8.615850e-47 |
| Msa0098240 | Msa1403940 | 0.824053 | 9.942981e-54 | -8.615850e-47 |
| Msa0098240 | Msa1407990 | 0.805857 | 1.090041e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098240 | MtrunA17_Chr1g0151921 | 96.727 | 550 | 15 | 2 | 1 | 549 | 1 | 548 | 0.0 | 1073 |
| Msa0098240 | MtrunA17_Chr7g0214661 | 49.153 | 236 | 104 | 3 | 5 | 240 | 3 | 222 | 2.71e-71 | 246 |
| Msa0098240 | MtrunA17_Chr7g0214661 | 46.835 | 79 | 37 | 1 | 448 | 521 | 788 | 866 | 2.33e-13 | 73.2 |
| Msa0098240 | MtrunA17_Chr7g0214591 | 52.857 | 140 | 54 | 1 | 31 | 170 | 17 | 144 | 7.35e-48 | 163 |
| Msa0098240 | MtrunA17_Chr4g0031511 | 30.137 | 146 | 101 | 1 | 11 | 155 | 16 | 161 | 1.86e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098240 | AT5G11710.2 | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 546 |
| Msa0098240 | AT5G11710.1 | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 546 |
| Msa0098240 | AT5G11710.3 | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 546 |
| Msa0098240 | AT2G43160.4 | 49.412 | 255 | 115 | 5 | 5 | 255 | 3 | 247 | 9.22e-72 | 242 |
| Msa0098240 | AT2G43160.3 | 49.412 | 255 | 115 | 5 | 5 | 255 | 3 | 247 | 1.55e-70 | 243 |
| Msa0098240 | AT2G43160.3 | 42.169 | 83 | 43 | 2 | 446 | 523 | 704 | 786 | 1.51e-11 | 67.8 |
| Msa0098240 | AT2G43160.2 | 49.412 | 255 | 115 | 5 | 5 | 255 | 3 | 247 | 1.55e-70 | 243 |
| Msa0098240 | AT2G43160.2 | 42.169 | 83 | 43 | 2 | 446 | 523 | 704 | 786 | 1.51e-11 | 67.8 |
| Msa0098240 | AT2G43160.5 | 49.412 | 255 | 115 | 5 | 5 | 255 | 3 | 247 | 1.55e-70 | 243 |
| Msa0098240 | AT2G43160.5 | 42.169 | 83 | 43 | 2 | 446 | 523 | 704 | 786 | 1.51e-11 | 67.8 |
| Msa0098240 | AT2G43160.1 | 49.412 | 255 | 115 | 5 | 5 | 255 | 3 | 247 | 1.55e-70 | 243 |
| Msa0098240 | AT2G43160.1 | 42.169 | 83 | 43 | 2 | 446 | 523 | 704 | 786 | 1.51e-11 | 67.8 |
| Msa0098240 | AT3G59290.1 | 53.659 | 205 | 83 | 2 | 5 | 207 | 3 | 197 | 1.26e-65 | 231 |
| Msa0098240 | AT3G23350.1 | 33.577 | 137 | 82 | 2 | 25 | 155 | 31 | 164 | 6.89e-14 | 72.8 |
| Msa0098240 | AT3G23350.2 | 33.577 | 137 | 82 | 2 | 25 | 155 | 32 | 165 | 7.24e-14 | 72.8 |
| Msa0098240 | AT3G46540.1 | 32.031 | 128 | 86 | 1 | 12 | 138 | 30 | 157 | 4.10e-13 | 70.9 |
| Msa0098240 | AT3G46540.2 | 32.031 | 128 | 86 | 1 | 12 | 138 | 18 | 145 | 4.10e-13 | 70.5 |
| Msa0098240 | AT3G46540.3 | 35.849 | 106 | 67 | 1 | 34 | 138 | 4 | 109 | 4.39e-13 | 70.1 |
Find 143 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCTTCTGTTCGATTTC+AGG | 0.151663 | 1_3:-4176919 | None:intergenic |
| ATTAGCTGTTATAGAGTATT+TGG | 0.202159 | 1_3:+4178536 | Msa0098240:CDS |
| AGTAACAAATATGGAGGTTT+TGG | 0.263690 | 1_3:+4179055 | Msa0098240:CDS |
| CTTGCTATTCCTACCTTTCT+TGG | 0.264866 | 1_3:-4182740 | None:intergenic |
| TTCAGGTGAAGTCTGGCATT+TGG | 0.264950 | 1_3:+4181882 | Msa0098240:CDS |
| CTCTAATGTTTCGCCTAAAA+AGG | 0.277229 | 1_3:+4181853 | Msa0098240:CDS |
| GGCAGCCAAAACTATCAATT+TGG | 0.281481 | 1_3:+4182573 | Msa0098240:CDS |
| TCAAACCAGGTTGATCTCTT+TGG | 0.293931 | 1_3:+4180676 | Msa0098240:CDS |
| GCCTTGACCTTCCTTTGTTC+CGG | 0.305544 | 1_3:+4182900 | Msa0098240:three_prime_UTR |
| TCAGGTGAAGTCTGGCATTT+GGG | 0.306109 | 1_3:+4181883 | Msa0098240:CDS |
| TGGACAAGATTGGTTGAAAC+TGG | 0.327690 | 1_3:+4178372 | Msa0098240:CDS |
| ACCCACCAAATTGATAGTTT+TGG | 0.328870 | 1_3:-4182578 | None:intergenic |
| TTTGAATATGTTGAGCCTAA+TGG | 0.332003 | 1_3:+4178744 | Msa0098240:CDS |
| AGCTGGTTATGAATGTTCTT+TGG | 0.350077 | 1_3:+4178352 | Msa0098240:CDS |
| TTGCTATTCCTACCTTTCTT+GGG | 0.353844 | 1_3:-4182739 | None:intergenic |
| TTGAATATGTTGAGCCTAAT+GGG | 0.363331 | 1_3:+4178745 | Msa0098240:CDS |
| ATTTGAGTACTGCAGTTTGC+TGG | 0.366194 | 1_3:-4182839 | None:intergenic |
| TTGCTGTCAGGCTGCACAGC+TGG | 0.369928 | 1_3:-4181650 | None:intergenic |
| AGTGGGAGCAGTAACAAATA+TGG | 0.392500 | 1_3:+4179046 | Msa0098240:CDS |
| AGAGCTATGGGTACAGGATC+TGG | 0.399817 | 1_3:+4182486 | Msa0098240:CDS |
| AGATTTGCTCGGTGACTTCA+TGG | 0.401461 | 1_3:+4180702 | Msa0098240:CDS |
| AAGGTTCTGCACGGTTTGTC+AGG | 0.408715 | 1_3:+4179209 | Msa0098240:CDS |
| TTCACTCATTCTTTGTGTGT+CGG | 0.414467 | 1_3:+4182648 | Msa0098240:three_prime_UTR |
| TGTGCTTAATTTAGGTATGT+TGG | 0.422310 | 1_3:+4178974 | Msa0098240:intron |
| AGGCTCAACATATTCAAAAC+TGG | 0.430008 | 1_3:-4178739 | None:intergenic |
| AATATAATCACAATAGTGAT+AGG | 0.433057 | 1_3:-4182765 | None:intergenic |
| TGCAACTGATGATGAACCTT+GGG | 0.433222 | 1_3:+4178076 | Msa0098240:CDS |
| GGTGAATCTGAAGGTGCTTA+AGG | 0.434179 | 1_3:+4176894 | Msa0098240:CDS |
| TCAGGCTGCACAGCTGGTGC+AGG | 0.438377 | 1_3:-4181644 | None:intergenic |
| CCCTCCAACTACATTATACA+TGG | 0.448211 | 1_3:+4182461 | Msa0098240:CDS |
| GAATGTTCTTTGGACAAGAT+TGG | 0.451236 | 1_3:+4178362 | Msa0098240:CDS |
| ATTATACATGGGGAGAGCTA+TGG | 0.454996 | 1_3:+4182473 | Msa0098240:CDS |
| CTCTTTGGACAAGATTTGCT+CGG | 0.461867 | 1_3:+4180691 | Msa0098240:CDS |
| GATCCCTCAAAATTATTAAG+TGG | 0.467363 | 1_3:-4181728 | None:intergenic |
| AAAGTATCCCTTGTCGATGT+TGG | 0.469042 | 1_3:+4182393 | Msa0098240:CDS |
| CTTGTCGATGTTGGAATTGT+GGG | 0.472687 | 1_3:+4182402 | Msa0098240:CDS |
| CTCCCCATGTATAATGTAGT+TGG | 0.476200 | 1_3:-4182465 | None:intergenic |
| TCTTCCTTGCAGCAAAAGTC+AGG | 0.478751 | 1_3:+4180238 | Msa0098240:intron |
| AGTCCCACATCCTTCCCATT+AGG | 0.482355 | 1_3:-4178759 | None:intergenic |
| GGGTCCTCATGGTACTGTGC+TGG | 0.484662 | 1_3:+4178097 | Msa0098240:CDS |
| GGATCTGGTCTTGGTATGTA+TGG | 0.487460 | 1_3:+4182501 | Msa0098240:CDS |
| GTCAGAGGTTGATCTCTTTG+CGG | 0.488917 | 1_3:+4180771 | Msa0098240:CDS |
| TAAGCGATGGATTAGATGAA+AGG | 0.492185 | 1_3:+4182430 | Msa0098240:CDS |
| AGTGGAATCACATACAAATC+CGG | 0.492190 | 1_3:+4179007 | Msa0098240:CDS |
| ATGTAGCGTTGTGTTAATTG+AGG | 0.501918 | 1_3:-4176660 | None:intergenic |
| ATGGGTACAGGATCTGGTCT+TGG | 0.504365 | 1_3:+4182492 | Msa0098240:CDS |
| CCTTGTCGATGTTGGAATTG+TGG | 0.508418 | 1_3:+4182401 | Msa0098240:CDS |
| AGCCAAAACTATCAATTTGG+TGG | 0.514743 | 1_3:+4182576 | Msa0098240:CDS |
| CTTCAAACAGAGACTTCAGC+TGG | 0.522456 | 1_3:+4180649 | Msa0098240:intron |
| TTAATTGAGGCAAAATTCGA+TGG | 0.523250 | 1_3:-4176647 | None:intergenic |
| CAAATTTGACCTACTTGTCA+CGG | 0.524222 | 1_3:-4178869 | None:intergenic |
| TCTGACGCATCACTAGTTGC+TGG | 0.528495 | 1_3:-4180754 | None:intergenic |
| ATGGGGAGAGCTATGGGTAC+AGG | 0.530659 | 1_3:+4182480 | Msa0098240:CDS |
| TATGTTGGTGTTTCATCTAG+TGG | 0.532003 | 1_3:+4178989 | Msa0098240:CDS |
| GGATTAGATGAAAGGGAGAA+AGG | 0.532666 | 1_3:+4182438 | Msa0098240:CDS |
| TTTCAGTACTGAATGTCAGC+TGG | 0.535749 | 1_3:+4178335 | Msa0098240:intron |
| CCCATGTATAATGTAGTTGG+AGG | 0.538487 | 1_3:-4182462 | None:intergenic |
| GCGCTATGATGAAGCAAAAG+TGG | 0.543758 | 1_3:+4179120 | Msa0098240:CDS |
| GATTGATAACAGAAAGAGAG+AGG | 0.544590 | 1_3:+4176873 | Msa0098240:intron |
| AAGCGATGGATTAGATGAAA+GGG | 0.545324 | 1_3:+4182431 | Msa0098240:CDS |
| AGGATGTGGGACTCAATGTA+AGG | 0.551356 | 1_3:+4178769 | Msa0098240:CDS |
| TTATACATGGGGAGAGCTAT+GGG | 0.558608 | 1_3:+4182474 | Msa0098240:CDS |
| TCAAAAGTGCTGTTATTCAC+AGG | 0.558665 | 1_3:-4181689 | None:intergenic |
| TGTTGGTGTAACTGAAGGAA+TGG | 0.559111 | 1_3:-4181603 | None:intergenic |
| ATTGAAAACAAGTCAACTGT+TGG | 0.563012 | 1_3:-4181620 | None:intergenic |
| TCGGTGGCAGCATTAGTTGA+GGG | 0.563296 | 1_3:-4181800 | None:intergenic |
| GTAACATTACATTTCTCGAA+CGG | 0.564681 | 1_3:-4176752 | None:intergenic |
| AAGATTGGTTGAAACTGGAA+AGG | 0.564709 | 1_3:+4178377 | Msa0098240:CDS |
| TTAAGTGGAACAGAAGCAAA+GGG | 0.564718 | 1_3:-4181713 | None:intergenic |
| GGTTCCTGAAATCGAACAGA+AGG | 0.566856 | 1_3:+4176915 | Msa0098240:CDS |
| ATTAAGTGGAACAGAAGCAA+AGG | 0.569259 | 1_3:-4181714 | None:intergenic |
| TCTCCAGCTGTTGACTGTGA+AGG | 0.569619 | 1_3:-4182531 | None:intergenic |
| ACTACTAAATGAGGTTGTCC+CGG | 0.571326 | 1_3:-4179026 | None:intergenic |
| AATAAGACCGGAACAAAGGA+AGG | 0.571371 | 1_3:-4182907 | None:intergenic |
| ACTCCTTCACAGTCAACAGC+TGG | 0.572617 | 1_3:+4182528 | Msa0098240:CDS |
| GCCAAAACTATCAATTTGGT+GGG | 0.572703 | 1_3:+4182577 | Msa0098240:CDS |
| GGTACACTTGCACTTTGAGA+AGG | 0.573687 | 1_3:-4180311 | None:intergenic |
| GTGGAATCACATACAAATCC+GGG | 0.577208 | 1_3:+4179008 | Msa0098240:CDS |
| ACTTACGAGCAGATATATTG+AGG | 0.577768 | 1_3:-4181934 | None:intergenic |
| ATCGGTGGCAGCATTAGTTG+AGG | 0.578958 | 1_3:-4181801 | None:intergenic |
| ATTCCATGCTCAGGATGAAG+TGG | 0.579767 | 1_3:+4181562 | Msa0098240:intron |
| TCAACTGTTGGTGTAACTGA+AGG | 0.580371 | 1_3:-4181608 | None:intergenic |
| GATGAACCTTGGGGTCCTCA+TGG | 0.580644 | 1_3:+4178086 | Msa0098240:CDS |
| ACATAAAGAATGAATAAGAC+CGG | 0.581344 | 1_3:-4182919 | None:intergenic |
| TAGTGATAGCTACGGAGACA+AGG | 0.581504 | 1_3:+4179096 | Msa0098240:CDS |
| TCAACTAATGCTGCCACCGA+TGG | 0.582272 | 1_3:+4181803 | Msa0098240:CDS |
| GGGACTCAATGTAAGGAAGA+AGG | 0.582398 | 1_3:+4178776 | Msa0098240:CDS |
| AGCAACTAGTGATGCGTCAG+AGG | 0.584280 | 1_3:+4180756 | Msa0098240:CDS |
| TCTACACAGATCAATCATCA+TGG | 0.584709 | 1_3:+4176705 | Msa0098240:exon |
| AAGAATGAGTGAAAATGTGA+TGG | 0.585843 | 1_3:-4182638 | None:intergenic |
| ACTGCTCCCACTACTAAATG+AGG | 0.585899 | 1_3:-4179035 | None:intergenic |
| AGGAGCTAGTTCTCAACCAC+AGG | 0.588172 | 1_3:+4180831 | Msa0098240:CDS |
| TAATTGAGGCAAAATTCGAT+GGG | 0.591731 | 1_3:-4176646 | None:intergenic |
| TCATCAAAGTCGTCCTCAGT+AGG | 0.591925 | 1_3:-4180332 | None:intergenic |
| TTTACCACTTGTACTACCAT+CGG | 0.597131 | 1_3:-4181819 | None:intergenic |
| AAAGAGAGAGGTGAATCTGA+AGG | 0.598297 | 1_3:+4176885 | Msa0098240:CDS |
| GGACAACCTCATTTAGTAGT+GGG | 0.598565 | 1_3:+4179029 | Msa0098240:CDS |
| AATGAATAAGACCGGAACAA+AGG | 0.601282 | 1_3:-4182911 | None:intergenic |
| AGATCTGATCTGAAGGGGAA+AGG | 0.604749 | 1_3:-4176685 | None:intergenic |
| TGGGCTGATTCGCTAAGCCG+TGG | 0.607031 | 1_3:+4181902 | Msa0098240:CDS |
| CTAGCTCCTTTGTCCGCATG+TGG | 0.609894 | 1_3:-4180817 | None:intergenic |
| TGAGCCTAATGGGAAGGATG+TGG | 0.610430 | 1_3:+4178755 | Msa0098240:CDS |
| CCACAATTCCAACATCGACA+AGG | 0.611361 | 1_3:-4182401 | None:intergenic |
| ATGCAACTGATGATGAACCT+TGG | 0.611657 | 1_3:+4178075 | Msa0098240:CDS |
| TCTGTGTAGATCTGATCTGA+AGG | 0.612067 | 1_3:-4176692 | None:intergenic |
| TTCAGCTGGAATCTCAAACC+AGG | 0.612206 | 1_3:+4180663 | Msa0098240:CDS |
| CTGTGTAGATCTGATCTGAA+GGG | 0.616464 | 1_3:-4176691 | None:intergenic |
| GTCGATGTTGGAATTGTGGG+TGG | 0.616546 | 1_3:+4182405 | Msa0098240:CDS |
| ATAGAGTATTTGGTATCACA+TGG | 0.617992 | 1_3:+4178546 | Msa0098240:CDS |
| GGGACAACCTCATTTAGTAG+TGG | 0.619718 | 1_3:+4179028 | Msa0098240:CDS |
| GATAGGTTTAGTGATAGCTA+CGG | 0.620987 | 1_3:+4179088 | Msa0098240:CDS |
| CACAATTCCAACATCGACAA+GGG | 0.621760 | 1_3:-4182400 | None:intergenic |
| TGTGTAGATCTGATCTGAAG+GGG | 0.623085 | 1_3:-4176690 | None:intergenic |
| CTTGTCCAAAGAGATCAACC+TGG | 0.623812 | 1_3:-4180681 | None:intergenic |
| ACCGGAACAAAGGAAGGTCA+AGG | 0.625567 | 1_3:-4182901 | None:intergenic |
| TGGTTGAAACTGGAAAGGAT+TGG | 0.625908 | 1_3:+4178382 | Msa0098240:CDS |
| GTTGGTGTAACTGAAGGAAT+GGG | 0.627816 | 1_3:-4181602 | None:intergenic |
| TACTCAGGAAAATCACGCCA+TGG | 0.632757 | 1_3:+4179151 | Msa0098240:CDS |
| TTACTAGTAGATGTTCCTCT+CGG | 0.634177 | 1_3:-4180362 | None:intergenic |
| AGTGATAGCTACGGAGACAA+GGG | 0.634809 | 1_3:+4179097 | Msa0098240:CDS |
| CCTCCAACTACATTATACAT+GGG | 0.635166 | 1_3:+4182462 | Msa0098240:CDS |
| GCCACCGATGGTAGTACAAG+TGG | 0.636003 | 1_3:+4181815 | Msa0098240:CDS |
| GGATTGGCGATATGTATACA+AGG | 0.637371 | 1_3:+4178398 | Msa0098240:CDS |
| TATTGAGGTCAATCAATCCA+CGG | 0.637570 | 1_3:-4181919 | None:intergenic |
| CCATGTATAATGTAGTTGGA+GGG | 0.640533 | 1_3:-4182461 | None:intergenic |
| TCTGGTCTTGGTATGTATGG+TGG | 0.648533 | 1_3:+4182504 | Msa0098240:CDS |
| ACCACTTGTACTACCATCGG+TGG | 0.649891 | 1_3:-4181816 | None:intergenic |
| GAGCCTAATGGGAAGGATGT+GGG | 0.656107 | 1_3:+4178756 | Msa0098240:CDS |
| GGGAGCAGTAACAAATATGG+AGG | 0.659082 | 1_3:+4179049 | Msa0098240:CDS |
| GCAGCACCACATGCGGACAA+AGG | 0.659400 | 1_3:+4180811 | Msa0098240:CDS |
| ACAGTACCATGAGGACCCCA+AGG | 0.661607 | 1_3:-4178092 | None:intergenic |
| AAGTGCAAGTGTACCTACTG+AGG | 0.672364 | 1_3:+4180319 | Msa0098240:CDS |
| GTGATAGCTACGGAGACAAG+GGG | 0.672418 | 1_3:+4179098 | Msa0098240:CDS |
| CTCCAACTACATTATACATG+GGG | 0.675489 | 1_3:+4182463 | Msa0098240:CDS |
| AAAGTGGACAAAGATTACTC+AGG | 0.681481 | 1_3:+4179136 | Msa0098240:CDS |
| TGTGCAGCCTGACAGCAAGT+CGG | 0.682310 | 1_3:+4181655 | Msa0098240:CDS |
| ATATGTTGAGCCTAATGGGA+AGG | 0.688159 | 1_3:+4178749 | Msa0098240:CDS |
| ATTGTGGGTGGACTAAGCGA+TGG | 0.688579 | 1_3:+4182417 | Msa0098240:CDS |
| GCTTAATGTTGTATAATGTG+TGG | 0.689763 | 1_3:+4182875 | Msa0098240:three_prime_UTR |
| TGTGCTGGCAGAGATTGCAA+CGG | 0.693145 | 1_3:+4178112 | Msa0098240:CDS |
| TGTATCAGCAGCACCACATG+CGG | 0.718450 | 1_3:+4180804 | Msa0098240:CDS |
| GCAACTGATGATGAACCTTG+GGG | 0.746004 | 1_3:+4178077 | Msa0098240:CDS |
| TCTGCCAGCACAGTACCATG+AGG | 0.764740 | 1_3:-4178101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCAAAAAAAAAAAAAA+TGG | - | chr1_3:4176791-4176810 | None:intergenic | 10.0% |
| !!! | TAAATATATTTTTCTCAATA+AGG | + | chr1_3:4177008-4177027 | Msa0098240:intron | 10.0% |
| !!! | TTTAATTTTTGAATTTCTTT+TGG | + | chr1_3:4178186-4178205 | Msa0098240:intron | 10.0% |
| !! | TGAAATTTAATATATTTGTT+AGG | - | chr1_3:4179604-4179623 | None:intergenic | 10.0% |
| !! | AAATTAAAAAGCAATATAAC+AGG | - | chr1_3:4178174-4178193 | None:intergenic | 15.0% |
| !!! | TAATTTTCTTGTTTTTCTTT+TGG | + | chr1_3:4178951-4178970 | Msa0098240:intron | 15.0% |
| !!! | GGAAAAAATTTATTTTGATT+TGG | + | chr1_3:4180047-4180066 | Msa0098240:intron | 15.0% |
| !! | ATTACATTGAAACATATTTA+GGG | + | chr1_3:4182108-4182127 | Msa0098240:intron | 15.0% |
| !! | ACATAAGTAACTAAAATAAT+TGG | - | chr1_3:4182345-4182364 | None:intergenic | 15.0% |
| !!! | GTACAATTTCAATTTGATTT+CGG | - | chr1_3:4177048-4177067 | None:intergenic | 20.0% |
| !!! | TTAGATTTTGTAATAAAGAG+AGG | + | chr1_3:4177387-4177406 | Msa0098240:intron | 20.0% |
| !!! | ATGATACATTTTATGTTTTC+TGG | + | chr1_3:4177705-4177724 | Msa0098240:intron | 20.0% |
| !! | ATATCAGTAATGCTTAATAA+AGG | + | chr1_3:4177782-4177801 | Msa0098240:intron | 20.0% |
| !! | TATCAGTAATGCTTAATAAA+GGG | + | chr1_3:4177783-4177802 | Msa0098240:intron | 20.0% |
| !! | ACATTCTCAATAAATAGAAA+AGG | - | chr1_3:4177884-4177903 | None:intergenic | 20.0% |
| !! | TGTAACTTAAAGTAATAACA+TGG | - | chr1_3:4178441-4178460 | None:intergenic | 20.0% |
| !!! | TGTTATTACTTTAAGTTACA+AGG | + | chr1_3:4178441-4178460 | Msa0098240:intron | 20.0% |
| !! | TTAGTTTACCTAATCATTAT+GGG | - | chr1_3:4178908-4178927 | None:intergenic | 20.0% |
| !! | TAATTCATTCATTAACCATA+TGG | + | chr1_3:4179554-4179573 | Msa0098240:intron | 20.0% |
| !!! | AAGTGTAATTTTTCTCTAAT+AGG | + | chr1_3:4179742-4179761 | Msa0098240:intron | 20.0% |
| !!! | TTTTTCTCTAATAGGTTTTA+TGG | + | chr1_3:4179750-4179769 | Msa0098240:intron | 20.0% |
| !! | AACTGTTACTATTAAAATGT+AGG | + | chr1_3:4179839-4179858 | Msa0098240:intron | 20.0% |
| !! | ACTGTTACTATTAAAATGTA+GGG | + | chr1_3:4179840-4179859 | Msa0098240:intron | 20.0% |
| !! | CAATTAGAAATCTTTCTTAT+GGG | - | chr1_3:4179871-4179890 | None:intergenic | 20.0% |
| !! | AGCTAACATTAAAAAAACAA+CGG | - | chr1_3:4180886-4180905 | None:intergenic | 20.0% |
| !!! | TAAATCTGTTTTATTGGTTT+GGG | - | chr1_3:4181363-4181382 | None:intergenic | 20.0% |
| !!! | TCATTCTAAATCTGTTTTAT+TGG | - | chr1_3:4181369-4181388 | None:intergenic | 20.0% |
| !! | AATATGTTTCAATGTAATCA+TGG | - | chr1_3:4182106-4182125 | None:intergenic | 20.0% |
| !! | GATTACATTGAAACATATTT+AGG | + | chr1_3:4182107-4182126 | Msa0098240:intron | 20.0% |
| !! | TAAGATTAAGTACATGAATT+TGG | + | chr1_3:4182206-4182225 | Msa0098240:intron | 20.0% |
| !!! | TTTGTGATATTTTTTACTTC+TGG | - | chr1_3:4182605-4182624 | None:intergenic | 20.0% |
| !! | AATATAATCACAATAGTGAT+AGG | - | chr1_3:4182768-4182787 | None:intergenic | 20.0% |
| ! | AATTGAAATTGTACGAGAAT+TGG | + | chr1_3:4177054-4177073 | Msa0098240:intron | 25.0% |
| ! | AAATGACAATATTAGAGAGT+TGG | + | chr1_3:4177284-4177303 | Msa0098240:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+GGG | + | chr1_3:4177285-4177304 | Msa0098240:intron | 25.0% |
| ! | AGATGTATGATAGAACAATA+TGG | + | chr1_3:4177498-4177517 | Msa0098240:intron | 25.0% |
| !!! | TGGTTTCAATTTGTTTTACA+TGG | + | chr1_3:4177830-4177849 | Msa0098240:intron | 25.0% |
| ! | AAAAATCAAAACAATACCGA+TGG | - | chr1_3:4178026-4178045 | None:intergenic | 25.0% |
| ! | AACACCTAAATTATAAAGAG+TGG | - | chr1_3:4178053-4178072 | None:intergenic | 25.0% |
| ! | ACTCTTTATAATTTAGGTGT+TGG | + | chr1_3:4178052-4178071 | Msa0098240:intron | 25.0% |
| !!! | TGAATTTCTTTTGGTTTTCA+TGG | + | chr1_3:4178195-4178214 | Msa0098240:intron | 25.0% |
| !! | ATTAGCTGTTATAGAGTATT+TGG | + | chr1_3:4178536-4178555 | Msa0098240:CDS | 25.0% |
| !! | TAAACACCATATGCTTTTAT+TGG | + | chr1_3:4178704-4178723 | Msa0098240:intron | 25.0% |
| !! | CTTTTCTCTATCATTCAAAA+GGG | - | chr1_3:4178817-4178836 | None:intergenic | 25.0% |
| !! | TCTTTTCTCTATCATTCAAA+AGG | - | chr1_3:4178818-4178837 | None:intergenic | 25.0% |
| ! | ATTTCAATCCCATAATGATT+AGG | + | chr1_3:4178897-4178916 | Msa0098240:intron | 25.0% |
| ! | CTTAGTTTACCTAATCATTA+TGG | - | chr1_3:4178909-4178928 | None:intergenic | 25.0% |
| ! | AAAACAATCCAACTATAGTA+TGG | - | chr1_3:4179283-4179302 | None:intergenic | 25.0% |
| ! | TTCACAAGTTTAAAAACTTG+GGG | - | chr1_3:4179422-4179441 | None:intergenic | 25.0% |
| ! | CTTCACAAGTTTAAAAACTT+GGG | - | chr1_3:4179423-4179442 | None:intergenic | 25.0% |
| ! | TAACAATTTCATAAACTCCT+TGG | - | chr1_3:4179453-4179472 | None:intergenic | 25.0% |
| ! | AGCTAATGTACAAAAAAGAA+AGG | - | chr1_3:4179507-4179526 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTGTACATTAGC+TGG | + | chr1_3:4179506-4179525 | Msa0098240:intron | 25.0% |
| ! | CTAATGTTTGTTCTTCATAA+AGG | + | chr1_3:4179701-4179720 | Msa0098240:intron | 25.0% |
| !! | AATTGACACATTTTCTTCTA+AGG | - | chr1_3:4179784-4179803 | None:intergenic | 25.0% |
| ! | GCAATTAGAAATCTTTCTTA+TGG | - | chr1_3:4179872-4179891 | None:intergenic | 25.0% |
| !! | TGATTTGGAAAAAATTAAGC+AGG | + | chr1_3:4180062-4180081 | Msa0098240:intron | 25.0% |
| !! | AAAAAATTAAGCAGGAGTTT+TGG | + | chr1_3:4180070-4180089 | Msa0098240:intron | 25.0% |
| !!! | GACTATGTATTTTGATTTTG+AGG | + | chr1_3:4180587-4180606 | Msa0098240:intron | 25.0% |
| !! | TTTAAGATAGAACCTAATGA+CGG | - | chr1_3:4180942-4180961 | None:intergenic | 25.0% |
| ! | CAAACAATCTCATTCAATAT+TGG | - | chr1_3:4181011-4181030 | None:intergenic | 25.0% |
| !!! | GTGTTGATAAATTTTCACAT+GGG | + | chr1_3:4181145-4181164 | Msa0098240:intron | 25.0% |
| !! | ATTTGAGATAATAACGAGTT+TGG | + | chr1_3:4181228-4181247 | Msa0098240:intron | 25.0% |
| !!! | ACGTTTTTTAGACTTTAGAA+GGG | + | chr1_3:4181251-4181270 | Msa0098240:intron | 25.0% |
| !!! | CTAAATCTGTTTTATTGGTT+TGG | - | chr1_3:4181364-4181383 | None:intergenic | 25.0% |
| ! | TTATGAATTAAGTCCAATGA+TGG | - | chr1_3:4181397-4181416 | None:intergenic | 25.0% |
| !! | TGTTCCACTTAATAATTTTG+AGG | + | chr1_3:4181724-4181743 | Msa0098240:CDS | 25.0% |
| !! | GTTCCACTTAATAATTTTGA+GGG | + | chr1_3:4181725-4181744 | Msa0098240:CDS | 25.0% |
| !!! | GTTTTAAATATGTAGTTGCA+TGG | + | chr1_3:4182070-4182089 | Msa0098240:intron | 25.0% |
| !!! | TTGAAACATATTTAGGGTTT+TGG | + | chr1_3:4182114-4182133 | Msa0098240:intron | 25.0% |
| ! | ATTAAGTACATGAATTTGGT+AGG | + | chr1_3:4182210-4182229 | Msa0098240:intron | 25.0% |
| !! | GATGACATATTTTCAAACTT+CGG | + | chr1_3:4182552-4182571 | Msa0098240:CDS | 25.0% |
| ! | ACATAAAGAATGAATAAGAC+CGG | - | chr1_3:4182922-4182941 | None:intergenic | 25.0% |
| TAATTGAGGCAAAATTCGAT+GGG | - | chr1_3:4176649-4176668 | None:intergenic | 30.0% | |
| TTAATTGAGGCAAAATTCGA+TGG | - | chr1_3:4176650-4176669 | None:intergenic | 30.0% | |
| GTAACATTACATTTCTCGAA+CGG | - | chr1_3:4176755-4176774 | None:intergenic | 30.0% | |
| TGGAATGCTTATTAAAGATG+AGG | + | chr1_3:4177217-4177236 | Msa0098240:intron | 30.0% | |
| ATGACAATATTAGAGAGTTG+GGG | + | chr1_3:4177286-4177305 | Msa0098240:intron | 30.0% | |
| AATAAAGAGAGGAGATTAGA+TGG | + | chr1_3:4177398-4177417 | Msa0098240:intron | 30.0% | |
| ! | TAGTTTTCCTATGTCTCTTT+CGG | - | chr1_3:4177446-4177465 | None:intergenic | 30.0% |
| ! | TTTGTTGAGTCTGAAATTGA+TGG | + | chr1_3:4177572-4177591 | Msa0098240:intron | 30.0% |
| ! | AGCATATGATCACGTAATTT+TGG | + | chr1_3:4177599-4177618 | Msa0098240:intron | 30.0% |
| !! | ATAATTTGTTGATGCAAGAC+AGG | + | chr1_3:4177623-4177642 | Msa0098240:intron | 30.0% |
| TGTATCATCAAACTCAACAA+AGG | - | chr1_3:4177693-4177712 | None:intergenic | 30.0% | |
| ! | GCACATCTTAACAATGTTTT+TGG | + | chr1_3:4177810-4177829 | Msa0098240:intron | 30.0% |
| AATAAATAGAAAAGGAGCCT+TGG | - | chr1_3:4177876-4177895 | None:intergenic | 30.0% | |
| TCTGCCACTCTTTATAATTT+AGG | + | chr1_3:4178046-4178065 | Msa0098240:intron | 30.0% | |
| GGCTACCAAAAAATTGTAAA+TGG | + | chr1_3:4178133-4178152 | Msa0098240:intron | 30.0% | |
| !!! | GATGGCCATTTACAATTTTT+TGG | - | chr1_3:4178141-4178160 | None:intergenic | 30.0% |
| ! | ATAGAGTATTTGGTATCACA+TGG | + | chr1_3:4178546-4178565 | Msa0098240:CDS | 30.0% |
| ! | ATACTTTTCAGATCTCTGTA+AGG | + | chr1_3:4178601-4178620 | Msa0098240:intron | 30.0% |
| ! | TACTTTTCAGATCTCTGTAA+GGG | + | chr1_3:4178602-4178621 | Msa0098240:intron | 30.0% |
| ! | CCTTTACCAATAAAAGCATA+TGG | - | chr1_3:4178713-4178732 | None:intergenic | 30.0% |
| ! | CCATATGCTTTTATTGGTAA+AGG | + | chr1_3:4178710-4178729 | Msa0098240:intron | 30.0% |
| TTTGAATATGTTGAGCCTAA+TGG | + | chr1_3:4178744-4178763 | Msa0098240:CDS | 30.0% | |
| TTGAATATGTTGAGCCTAAT+GGG | + | chr1_3:4178745-4178764 | Msa0098240:CDS | 30.0% | |
| !! | TCTTTTGGTGTGCTTAATTT+AGG | + | chr1_3:4178966-4178985 | Msa0098240:intron | 30.0% |
| TGTGCTTAATTTAGGTATGT+TGG | + | chr1_3:4178974-4178993 | Msa0098240:intron | 30.0% | |
| ! | AGTAACAAATATGGAGGTTT+TGG | + | chr1_3:4179055-4179074 | Msa0098240:CDS | 30.0% |
| GCTTCACAAGTTTAAAAACT+TGG | - | chr1_3:4179424-4179443 | None:intergenic | 30.0% | |
| TTCATAAACTCCTTGGTAAA+CGG | - | chr1_3:4179446-4179465 | None:intergenic | 30.0% | |
| CTTTCTATCTTTCTTTACCT+TGG | + | chr1_3:4179640-4179659 | Msa0098240:intron | 30.0% | |
| !!! | AGCCTTCATTTTTTTTCCAA+CGG | - | chr1_3:4179669-4179688 | None:intergenic | 30.0% |
| !! | CAAAATAAGCTTGTTGAACT+AGG | - | chr1_3:4180023-4180042 | None:intergenic | 30.0% |
| !!! | TCAACAAGCTTATTTTGACT+TGG | + | chr1_3:4180026-4180045 | Msa0098240:intron | 30.0% |
| !!! | TTTGGTTTTTATGCACAGAA+AGG | + | chr1_3:4180149-4180168 | Msa0098240:intron | 30.0% |
| AGAATAGAATCATTGCAGTA+TGG | - | chr1_3:4180192-4180211 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTCCGTTTTTTTGG+CGG | - | chr1_3:4180552-4180571 | None:intergenic | 30.0% |
| !!! | TGGTTTTTCTTCCGTTTTTT+TGG | - | chr1_3:4180555-4180574 | None:intergenic | 30.0% |
| !!! | TGTATTTTGATTTTGAGGAC+AGG | + | chr1_3:4180592-4180611 | Msa0098240:intron | 30.0% |
| ! | TTTTCTACAGAAACAGATGT+TGG | - | chr1_3:4180733-4180752 | None:intergenic | 30.0% |
| ! | ATTGGCAACATTCATACTTT+TGG | - | chr1_3:4180993-4181012 | None:intergenic | 30.0% |
| TCCATCGATGTGAATATTAT+TGG | + | chr1_3:4181043-4181062 | Msa0098240:intron | 30.0% | |
| ACCAATAATATTCACATCGA+TGG | - | chr1_3:4181047-4181066 | None:intergenic | 30.0% | |
| GAGGAGAACATTAGAAATAT+TGG | + | chr1_3:4181123-4181142 | Msa0098240:intron | 30.0% | |
| !!! | GGTGTTGATAAATTTTCACA+TGG | + | chr1_3:4181144-4181163 | Msa0098240:intron | 30.0% |
| !!! | GACGTTTTTTAGACTTTAGA+AGG | + | chr1_3:4181250-4181269 | Msa0098240:intron | 30.0% |
| AATACAAAGACTAGACTAGA+TGG | + | chr1_3:4181281-4181300 | Msa0098240:intron | 30.0% | |
| TAGAATGAATGATCCATCAT+TGG | + | chr1_3:4181381-4181400 | Msa0098240:intron | 30.0% | |
| GGGAAAATTTGGTTGTATTA+TGG | + | chr1_3:4181466-4181485 | Msa0098240:intron | 30.0% | |
| ATTGAAAACAAGTCAACTGT+TGG | - | chr1_3:4181623-4181642 | None:intergenic | 30.0% | |
| GATCCCTCAAAATTATTAAG+TGG | - | chr1_3:4181731-4181750 | None:intergenic | 30.0% | |
| !!! | ATGCAGTTACATGCTTTTTT+CGG | - | chr1_3:4182050-4182069 | None:intergenic | 30.0% |
| CAATGTAATCATGGAAGAAA+AGG | - | chr1_3:4182097-4182116 | None:intergenic | 30.0% | |
| ATATAATGCATTAATCACCC+TGG | - | chr1_3:4182164-4182183 | None:intergenic | 30.0% | |
| CATGTACTTAATCTTAAGCA+AGG | - | chr1_3:4182202-4182221 | None:intergenic | 30.0% | |
| AAGAATGAGTGAAAATGTGA+TGG | - | chr1_3:4182641-4182660 | None:intergenic | 30.0% | |
| GCTTAATGTTGTATAATGTG+TGG | + | chr1_3:4182875-4182894 | Msa0098240:three_prime_UTR | 30.0% | |
| ATGTAGCGTTGTGTTAATTG+AGG | - | chr1_3:4176663-4176682 | None:intergenic | 35.0% | |
| TCTACACAGATCAATCATCA+TGG | + | chr1_3:4176705-4176724 | Msa0098240:exon | 35.0% | |
| ! | GATTGATAACAGAAAGAGAG+AGG | + | chr1_3:4176873-4176892 | Msa0098240:intron | 35.0% |
| AATTGTACGAGAATTGGTTG+AGG | + | chr1_3:4177060-4177079 | Msa0098240:intron | 35.0% | |
| TTCCACAGTTTACATTTGCA+GGG | - | chr1_3:4177202-4177221 | None:intergenic | 35.0% | |
| ATTCCACAGTTTACATTTGC+AGG | - | chr1_3:4177203-4177222 | None:intergenic | 35.0% | |
| TTCTCTCCAAATGTAAACTG+TGG | + | chr1_3:4177736-4177755 | Msa0098240:intron | 35.0% | |
| TGCATTCCACAGTTTACATT+TGG | - | chr1_3:4177745-4177764 | None:intergenic | 35.0% | |
| !! | ATAACAGGAAAAGCATCAGA+TGG | - | chr1_3:4178159-4178178 | None:intergenic | 35.0% |
| !!! | TGTACCTCTTTTGGTTTTCA+TGG | + | chr1_3:4178262-4178281 | Msa0098240:intron | 35.0% |
| TTCTCCATGAAAACCAAAAG+AGG | - | chr1_3:4178202-4178221 | None:intergenic | 35.0% | |
| AGCTGGTTATGAATGTTCTT+TGG | + | chr1_3:4178352-4178371 | Msa0098240:CDS | 35.0% | |
| GAATGTTCTTTGGACAAGAT+TGG | + | chr1_3:4178362-4178381 | Msa0098240:CDS | 35.0% | |
| ! | AAGATTGGTTGAAACTGGAA+AGG | + | chr1_3:4178377-4178396 | Msa0098240:CDS | 35.0% |
| AGGCTCAACATATTCAAAAC+TGG | - | chr1_3:4178742-4178761 | None:intergenic | 35.0% | |
| CAAATTTGACCTACTTGTCA+CGG | - | chr1_3:4178872-4178891 | None:intergenic | 35.0% | |
| GGTAAACTAAGCCACTATTA+TGG | + | chr1_3:4178918-4178937 | Msa0098240:intron | 35.0% | |
| ! | ATTTGCTGAGACCATAATAG+TGG | - | chr1_3:4178932-4178951 | None:intergenic | 35.0% |
| ! | TATGTTGGTGTTTCATCTAG+TGG | + | chr1_3:4178989-4179008 | Msa0098240:CDS | 35.0% |
| AGTGGAATCACATACAAATC+CGG | + | chr1_3:4179007-4179026 | Msa0098240:CDS | 35.0% | |
| GATAGGTTTAGTGATAGCTA+CGG | + | chr1_3:4179088-4179107 | Msa0098240:CDS | 35.0% | |
| AAAGTGGACAAAGATTACTC+AGG | + | chr1_3:4179136-4179155 | Msa0098240:CDS | 35.0% | |
| GAAGAGAACTCCTTCAAAAA+AGG | + | chr1_3:4179190-4179209 | Msa0098240:CDS | 35.0% | |
| CAGTAGTTCCATACTATAGT+TGG | + | chr1_3:4179272-4179291 | Msa0098240:intron | 35.0% | |
| ! | TTTTGCCATACCTAATCCTT+CGG | + | chr1_3:4179299-4179318 | Msa0098240:intron | 35.0% |
| ATTCAAACTTCCGAAGGATT+AGG | - | chr1_3:4179312-4179331 | None:intergenic | 35.0% | |
| TAGACATACAGTAGCGAATA+AGG | - | chr1_3:4179393-4179412 | None:intergenic | 35.0% | |
| CACCGTTGGAAAAAAAATGA+AGG | + | chr1_3:4179664-4179683 | Msa0098240:intron | 35.0% | |
| CATATAGTTGTATCATGCAC+AGG | - | chr1_3:4179947-4179966 | None:intergenic | 35.0% | |
| TACAACTATATGCTCATCAC+TGG | + | chr1_3:4179955-4179974 | Msa0098240:intron | 35.0% | |
| !! | TAAGCAGGAGTTTTGGTAAA+TGG | + | chr1_3:4180077-4180096 | Msa0098240:intron | 35.0% |
| !! | TTTGATGATTTTGATCCGAG+AGG | + | chr1_3:4180347-4180366 | Msa0098240:CDS | 35.0% |
| TTACTAGTAGATGTTCCTCT+CGG | - | chr1_3:4180365-4180384 | None:intergenic | 35.0% | |
| ! | TCTTTTTACTGTTTTGTGCG+TGG | + | chr1_3:4180449-4180468 | Msa0098240:intron | 35.0% |
| TGCTAATGAAGTTTAACCTG+TGG | - | chr1_3:4180850-4180869 | None:intergenic | 35.0% | |
| CCATTAAACAGGTGAGTAAT+TGG | - | chr1_3:4180910-4180929 | None:intergenic | 35.0% | |
| CCAATTACTCACCTGTTTAA+TGG | + | chr1_3:4180907-4180926 | Msa0098240:intron | 35.0% | |
| CCAATGAAGGTGGAAATTTA+AGG | - | chr1_3:4180966-4180985 | None:intergenic | 35.0% | |
| CCTTAAATTTCCACCTTCAT+TGG | + | chr1_3:4180963-4180982 | Msa0098240:intron | 35.0% | |
| !!! | CTGAACTAGTATTTTGAGAC+TGG | + | chr1_3:4181090-4181109 | Msa0098240:intron | 35.0% |
| !!! | TTTTGAGACTGGAATTGTCT+TGG | + | chr1_3:4181101-4181120 | Msa0098240:intron | 35.0% |
| ACAAGATATTACGTCGTTGT+TGG | + | chr1_3:4181416-4181435 | Msa0098240:intron | 35.0% | |
| GTGGAGAAAGAAGATTAAAC+AGG | - | chr1_3:4181497-4181516 | None:intergenic | 35.0% | |
| TAGCACTGTGAATGAAAATG+TGG | - | chr1_3:4181516-4181535 | None:intergenic | 35.0% | |
| !! | TCAAAAGTGCTGTTATTCAC+AGG | - | chr1_3:4181692-4181711 | None:intergenic | 35.0% |
| TTAAGTGGAACAGAAGCAAA+GGG | - | chr1_3:4181716-4181735 | None:intergenic | 35.0% | |
| ATTAAGTGGAACAGAAGCAA+AGG | - | chr1_3:4181717-4181736 | None:intergenic | 35.0% | |
| ! | TTTGAGGGATCTGATGTTTT+TGG | + | chr1_3:4181740-4181759 | Msa0098240:CDS | 35.0% |
| TTTACCACTTGTACTACCAT+CGG | - | chr1_3:4181822-4181841 | None:intergenic | 35.0% | |
| CTCTAATGTTTCGCCTAAAA+AGG | + | chr1_3:4181853-4181872 | Msa0098240:CDS | 35.0% | |
| TATTGAGGTCAATCAATCCA+CGG | - | chr1_3:4181922-4181941 | None:intergenic | 35.0% | |
| ACTTACGAGCAGATATATTG+AGG | - | chr1_3:4181937-4181956 | None:intergenic | 35.0% | |
| !!! | TTTTTCGGGTGAAAACATAC+AGG | - | chr1_3:4182035-4182054 | None:intergenic | 35.0% |
| !!! | TGCAGTTACATGCTTTTTTC+GGG | - | chr1_3:4182049-4182068 | None:intergenic | 35.0% |
| !! | TATTTAGGGTTTTGGCCTTT+TGG | + | chr1_3:4182122-4182141 | Msa0098240:intron | 35.0% |
| !! | ATTTAGGGTTTTGGCCTTTT+GGG | + | chr1_3:4182123-4182142 | Msa0098240:intron | 35.0% |
| ACACAAGATTGAATCCCAAA+AGG | - | chr1_3:4182140-4182159 | None:intergenic | 35.0% | |
| AAGTACATGAATTTGGTAGG+AGG | + | chr1_3:4182213-4182232 | Msa0098240:intron | 35.0% | |
| !!! | ATCGACAAGGGATACTTTTT+TGG | - | chr1_3:4182391-4182410 | None:intergenic | 35.0% |
| !! | TAAGCGATGGATTAGATGAA+AGG | + | chr1_3:4182430-4182449 | Msa0098240:CDS | 35.0% |
| !! | AAGCGATGGATTAGATGAAA+GGG | + | chr1_3:4182431-4182450 | Msa0098240:CDS | 35.0% |
| CCATGTATAATGTAGTTGGA+GGG | - | chr1_3:4182464-4182483 | None:intergenic | 35.0% | |
| CCTCCAACTACATTATACAT+GGG | + | chr1_3:4182462-4182481 | Msa0098240:CDS | 35.0% | |
| CTCCAACTACATTATACATG+GGG | + | chr1_3:4182463-4182482 | Msa0098240:CDS | 35.0% | |
| AGCCAAAACTATCAATTTGG+TGG | + | chr1_3:4182576-4182595 | Msa0098240:CDS | 35.0% | |
| GCCAAAACTATCAATTTGGT+GGG | + | chr1_3:4182577-4182596 | Msa0098240:CDS | 35.0% | |
| !! | ACCCACCAAATTGATAGTTT+TGG | - | chr1_3:4182581-4182600 | None:intergenic | 35.0% |
| TTCACTCATTCTTTGTGTGT+CGG | + | chr1_3:4182648-4182667 | Msa0098240:three_prime_UTR | 35.0% | |
| ! | ATCAAGATTGCTGAGCTTTT+TGG | + | chr1_3:4182675-4182694 | Msa0098240:three_prime_UTR | 35.0% |
| ! | CACTATTTTGTACCCAAGAA+AGG | + | chr1_3:4182727-4182746 | Msa0098240:three_prime_UTR | 35.0% |
| ! | ATTTTGTACCCAAGAAAGGT+AGG | + | chr1_3:4182731-4182750 | Msa0098240:three_prime_UTR | 35.0% |
| ! | TTGCTATTCCTACCTTTCTT+GGG | - | chr1_3:4182742-4182761 | None:intergenic | 35.0% |
| AATGAATAAGACCGGAACAA+AGG | - | chr1_3:4182914-4182933 | None:intergenic | 35.0% | |
| TGTGTAGATCTGATCTGAAG+GGG | - | chr1_3:4176693-4176712 | None:intergenic | 40.0% | |
| CTGTGTAGATCTGATCTGAA+GGG | - | chr1_3:4176694-4176713 | None:intergenic | 40.0% | |
| TCTGTGTAGATCTGATCTGA+AGG | - | chr1_3:4176695-4176714 | None:intergenic | 40.0% | |
| AAAGAGAGAGGTGAATCTGA+AGG | + | chr1_3:4176885-4176904 | Msa0098240:CDS | 40.0% | |
| TTCACCTTCTGTTCGATTTC+AGG | - | chr1_3:4176922-4176941 | None:intergenic | 40.0% | |
| ACAGTTTACATTTGCAGGGA+AGG | - | chr1_3:4177198-4177217 | None:intergenic | 40.0% | |
| TTCCCTGCAAATGTAAACTG+TGG | + | chr1_3:4177197-4177216 | Msa0098240:intron | 40.0% | |
| AGCATCCATCGTAGAAAAGA+TGG | + | chr1_3:4177310-4177329 | Msa0098240:intron | 40.0% | |
| ATCCATCGTAGAAAAGATGG+TGG | + | chr1_3:4177313-4177332 | Msa0098240:intron | 40.0% | |
| ! | TTCCACCATCTTTTCTACGA+TGG | - | chr1_3:4177318-4177337 | None:intergenic | 40.0% |
| !! | GTAGAAAAGATGGTGGAAGA+TGG | + | chr1_3:4177320-4177339 | Msa0098240:intron | 40.0% |
| !! | GATGGTGGAAACTCAACTTA+CGG | + | chr1_3:4177338-4177357 | Msa0098240:intron | 40.0% |
| ! | ATGGTGGAAACTCAACTTAC+GGG | + | chr1_3:4177339-4177358 | Msa0098240:intron | 40.0% |
| AAACTCAACTTACGGGGTTT+GGG | + | chr1_3:4177346-4177365 | Msa0098240:intron | 40.0% | |
| AAAGAGAGGAGATTAGATGG+AGG | + | chr1_3:4177401-4177420 | Msa0098240:intron | 40.0% | |
| AAGAGAGGAGATTAGATGGA+GGG | + | chr1_3:4177402-4177421 | Msa0098240:intron | 40.0% | |
| AACTCCTCTTAGTGGGATTA+GGG | + | chr1_3:4177542-4177561 | Msa0098240:intron | 40.0% | |
| ! | ATGCAACTGATGATGAACCT+TGG | + | chr1_3:4178075-4178094 | Msa0098240:CDS | 40.0% |
| ! | TGCAACTGATGATGAACCTT+GGG | + | chr1_3:4178076-4178095 | Msa0098240:CDS | 40.0% |
| ! | TGCTTCTTCTGTACCTCTTT+TGG | + | chr1_3:4178253-4178272 | Msa0098240:intron | 40.0% |
| ! | AGCTGACATTCAGTACTGAA+AGG | - | chr1_3:4178336-4178355 | None:intergenic | 40.0% |
| ! | TTTCAGTACTGAATGTCAGC+TGG | + | chr1_3:4178335-4178354 | Msa0098240:intron | 40.0% |
| ! | TGGACAAGATTGGTTGAAAC+TGG | + | chr1_3:4178372-4178391 | Msa0098240:CDS | 40.0% |
| TGGTTGAAACTGGAAAGGAT+TGG | + | chr1_3:4178382-4178401 | Msa0098240:CDS | 40.0% | |
| ! | GGATTGGCGATATGTATACA+AGG | + | chr1_3:4178398-4178417 | Msa0098240:CDS | 40.0% |
| TGCCTGACGTCAAATAGAAA+GGG | - | chr1_3:4178517-4178536 | None:intergenic | 40.0% | |
| ATGCCTGACGTCAAATAGAA+AGG | - | chr1_3:4178518-4178537 | None:intergenic | 40.0% | |
| ATATGTTGAGCCTAATGGGA+AGG | + | chr1_3:4178749-4178768 | Msa0098240:CDS | 40.0% | |
| GTGGAATCACATACAAATCC+GGG | + | chr1_3:4179008-4179027 | Msa0098240:CDS | 40.0% | |
| ACTACTAAATGAGGTTGTCC+CGG | - | chr1_3:4179029-4179048 | None:intergenic | 40.0% | |
| GGACAACCTCATTTAGTAGT+GGG | + | chr1_3:4179029-4179048 | Msa0098240:CDS | 40.0% | |
| AGTGGGAGCAGTAACAAATA+TGG | + | chr1_3:4179046-4179065 | Msa0098240:CDS | 40.0% | |
| !!! | TATGGAGGTTTTGGTTCAAG+TGG | + | chr1_3:4179064-4179083 | Msa0098240:CDS | 40.0% |
| !!! | GTTTTGGTTCAAGTGGTGAT+AGG | + | chr1_3:4179071-4179090 | Msa0098240:CDS | 40.0% |
| ! | CAGTTTTACTTGAGACACCA+TGG | - | chr1_3:4179171-4179190 | None:intergenic | 40.0% |
| CCTTCAAAAAAGGTTCTGCA+CGG | + | chr1_3:4179200-4179219 | Msa0098240:CDS | 40.0% | |
| AACTTCCGAAGGATTAGGTA+TGG | - | chr1_3:4179307-4179326 | None:intergenic | 40.0% | |
| CTTCAGATTCAAACTTCCGA+AGG | - | chr1_3:4179318-4179337 | None:intergenic | 40.0% | |
| !!! | TTTTTTTCCAACGGTGTCCA+AGG | - | chr1_3:4179660-4179679 | None:intergenic | 40.0% |
| GCCTTTAACTAGTCAAAGAC+AGG | + | chr1_3:4179918-4179937 | Msa0098240:intron | 40.0% | |
| ! | GCCTGTCTTTGACTAGTTAA+AGG | - | chr1_3:4179922-4179941 | None:intergenic | 40.0% |
| AAGGATCAAAGGTTTGAGTC+TGG | - | chr1_3:4179989-4180008 | None:intergenic | 40.0% | |
| CAATGAGGATCAAGGATCAA+AGG | - | chr1_3:4180000-4180019 | None:intergenic | 40.0% | |
| ! | CTTTTTACTTGCACCTGCTT+TGG | + | chr1_3:4180131-4180150 | Msa0098240:intron | 40.0% |
| CTGTGCATAAAAACCAAAGC+AGG | - | chr1_3:4180147-4180166 | None:intergenic | 40.0% | |
| AGAATCATTGCAGTATGGAG+AGG | - | chr1_3:4180187-4180206 | None:intergenic | 40.0% | |
| CCTTGGAGTTGTAATACTCA+AGG | - | chr1_3:4180529-4180548 | None:intergenic | 40.0% | |
| CCTTGAGTATTACAACTCCA+AGG | + | chr1_3:4180526-4180545 | Msa0098240:intron | 40.0% | |
| !! | TCAAACCAGGTTGATCTCTT+TGG | + | chr1_3:4180676-4180695 | Msa0098240:CDS | 40.0% |
| ! | CTCTTTGGACAAGATTTGCT+CGG | + | chr1_3:4180691-4180710 | Msa0098240:CDS | 40.0% |
| GGAGATTCATGCCATTAAAC+AGG | - | chr1_3:4180921-4180940 | None:intergenic | 40.0% | |
| !!! | TACTTTTGGAGCACCAATGA+AGG | - | chr1_3:4180979-4180998 | None:intergenic | 40.0% |
| GGGTGTATTAATTGCATGTG+AGG | + | chr1_3:4181165-4181184 | Msa0098240:intron | 40.0% | |
| ACAAAGACTAGACTAGATGG+AGG | + | chr1_3:4181284-4181303 | Msa0098240:intron | 40.0% | |
| AGTCCAGTAGTTGAAGATAG+AGG | + | chr1_3:4181316-4181335 | Msa0098240:intron | 40.0% | |
| TCTCCTCTATCTTCAACTAC+TGG | - | chr1_3:4181322-4181341 | None:intergenic | 40.0% | |
| ACGTCGTTGTTGGATTTATG+CGG | + | chr1_3:4181426-4181445 | Msa0098240:intron | 40.0% | |
| !! | ATCTTGTTGATTCCATGCTC+AGG | + | chr1_3:4181553-4181572 | Msa0098240:intron | 40.0% |
| GTTGGTGTAACTGAAGGAAT+GGG | - | chr1_3:4181605-4181624 | None:intergenic | 40.0% | |
| TGTTGGTGTAACTGAAGGAA+TGG | - | chr1_3:4181606-4181625 | None:intergenic | 40.0% | |
| TCAACTGTTGGTGTAACTGA+AGG | - | chr1_3:4181611-4181630 | None:intergenic | 40.0% | |
| !!! | ACCTGAAAAGCGTCCTTTTT+AGG | - | chr1_3:4181869-4181888 | None:intergenic | 40.0% |
| ACACAGAACGTATTATGCAG+TGG | - | chr1_3:4181988-4182007 | None:intergenic | 40.0% | |
| GGATTCAATCTTGTGTTCCA+GGG | + | chr1_3:4182144-4182163 | Msa0098240:intron | 40.0% | |
| TGAATTTGGTAGGAGGTTCT+TGG | + | chr1_3:4182220-4182239 | Msa0098240:intron | 40.0% | |
| ! | AAAGTATCCCTTGTCGATGT+TGG | + | chr1_3:4182393-4182412 | Msa0098240:CDS | 40.0% |
| CACAATTCCAACATCGACAA+GGG | - | chr1_3:4182403-4182422 | None:intergenic | 40.0% | |
| CTTGTCGATGTTGGAATTGT+GGG | + | chr1_3:4182402-4182421 | Msa0098240:CDS | 40.0% | |
| GGATTAGATGAAAGGGAGAA+AGG | + | chr1_3:4182438-4182457 | Msa0098240:CDS | 40.0% | |
| CCCTCCAACTACATTATACA+TGG | + | chr1_3:4182461-4182480 | Msa0098240:CDS | 40.0% | |
| CCCATGTATAATGTAGTTGG+AGG | - | chr1_3:4182465-4182484 | None:intergenic | 40.0% | |
| CTCCCCATGTATAATGTAGT+TGG | - | chr1_3:4182468-4182487 | None:intergenic | 40.0% | |
| ATTATACATGGGGAGAGCTA+TGG | + | chr1_3:4182473-4182492 | Msa0098240:CDS | 40.0% | |
| TTATACATGGGGAGAGCTAT+GGG | + | chr1_3:4182474-4182493 | Msa0098240:CDS | 40.0% | |
| GGCAGCCAAAACTATCAATT+TGG | + | chr1_3:4182573-4182592 | Msa0098240:CDS | 40.0% | |
| !! | CTTGCTATTCCTACCTTTCT+TGG | - | chr1_3:4182743-4182762 | None:intergenic | 40.0% |
| ! | ATTTGAGTACTGCAGTTTGC+TGG | - | chr1_3:4182842-4182861 | None:intergenic | 40.0% |
| AATAAGACCGGAACAAAGGA+AGG | - | chr1_3:4182910-4182929 | None:intergenic | 40.0% | |
| AGATCTGATCTGAAGGGGAA+AGG | - | chr1_3:4176688-4176707 | None:intergenic | 45.0% | |
| !! | GGTGAATCTGAAGGTGCTTA+AGG | + | chr1_3:4176894-4176913 | Msa0098240:CDS | 45.0% |
| GGTTCCTGAAATCGAACAGA+AGG | + | chr1_3:4176915-4176934 | Msa0098240:CDS | 45.0% | |
| AGGATGTTGCGTTGAATGTG+CGG | + | chr1_3:4177237-4177256 | Msa0098240:intron | 45.0% | |
| !! | GAAAAGATGGTGGAAGATGG+TGG | + | chr1_3:4177323-4177342 | Msa0098240:intron | 45.0% |
| TGGTGGAAACTCAACTTACG+GGG | + | chr1_3:4177340-4177359 | Msa0098240:intron | 45.0% | |
| GAAACTCAACTTACGGGGTT+TGG | + | chr1_3:4177345-4177364 | Msa0098240:intron | 45.0% | |
| CTATACGCCGAAAGAGACAT+AGG | + | chr1_3:4177436-4177455 | Msa0098240:intron | 45.0% | |
| ACTAAGAGGAGTTGGCAACA+TGG | - | chr1_3:4177535-4177554 | None:intergenic | 45.0% | |
| ATGTTGCCAACTCCTCTTAG+TGG | + | chr1_3:4177534-4177553 | Msa0098240:intron | 45.0% | |
| TGTTGCCAACTCCTCTTAGT+GGG | + | chr1_3:4177535-4177554 | Msa0098240:intron | 45.0% | |
| CTAATCCCACTAAGAGGAGT+TGG | - | chr1_3:4177543-4177562 | None:intergenic | 45.0% | |
| CAACTCCTCTTAGTGGGATT+AGG | + | chr1_3:4177541-4177560 | Msa0098240:intron | 45.0% | |
| ACTCCTCTTAGTGGGATTAG+GGG | + | chr1_3:4177543-4177562 | Msa0098240:intron | 45.0% | |
| CAAATCCAACCACTTTGCCA+AGG | + | chr1_3:4177856-4177875 | Msa0098240:intron | 45.0% | |
| ! | CAGATTGTGAGGTACTAGCA+TGG | - | chr1_3:4177999-4178018 | None:intergenic | 45.0% |
| CCTCACAATCTGCAATCCAT+CGG | + | chr1_3:4178007-4178026 | Msa0098240:intron | 45.0% | |
| ! | GCAACTGATGATGAACCTTG+GGG | + | chr1_3:4178077-4178096 | Msa0098240:CDS | 45.0% |
| CTGACGTCAAATAGAAAGGG+AGG | - | chr1_3:4178514-4178533 | None:intergenic | 45.0% | |
| CTCCCTTTCTATTTGACGTC+AGG | + | chr1_3:4178512-4178531 | Msa0098240:intron | 45.0% | |
| AGGATGTGGGACTCAATGTA+AGG | + | chr1_3:4178769-4178788 | Msa0098240:CDS | 45.0% | |
| GGGACTCAATGTAAGGAAGA+AGG | + | chr1_3:4178776-4178795 | Msa0098240:CDS | 45.0% | |
| GGGACAACCTCATTTAGTAG+TGG | + | chr1_3:4179028-4179047 | Msa0098240:CDS | 45.0% | |
| ACTGCTCCCACTACTAAATG+AGG | - | chr1_3:4179038-4179057 | None:intergenic | 45.0% | |
| GGGAGCAGTAACAAATATGG+AGG | + | chr1_3:4179049-4179068 | Msa0098240:CDS | 45.0% | |
| TAGTGATAGCTACGGAGACA+AGG | + | chr1_3:4179096-4179115 | Msa0098240:CDS | 45.0% | |
| AGTGATAGCTACGGAGACAA+GGG | + | chr1_3:4179097-4179116 | Msa0098240:CDS | 45.0% | |
| GCGCTATGATGAAGCAAAAG+TGG | + | chr1_3:4179120-4179139 | Msa0098240:CDS | 45.0% | |
| TACTCAGGAAAATCACGCCA+TGG | + | chr1_3:4179151-4179170 | Msa0098240:CDS | 45.0% | |
| !!! | CCGTGCAGAACCTTTTTTGA+AGG | - | chr1_3:4179203-4179222 | None:intergenic | 45.0% |
| CAGGTATGGCGTGCAAATAA+TGG | + | chr1_3:4179228-4179247 | Msa0098240:intron | 45.0% | |
| ACTTGTGAAGCCGTTTACCA+AGG | + | chr1_3:4179433-4179452 | Msa0098240:intron | 45.0% | |
| TATGCAGACAAGAGACTGCA+TGG | - | chr1_3:4179580-4179599 | None:intergenic | 45.0% | |
| TTCTTTACCTTGGACACCGT+TGG | + | chr1_3:4179650-4179669 | Msa0098240:intron | 45.0% | |
| GAACTAGGCAATGAGGATCA+AGG | - | chr1_3:4180008-4180027 | None:intergenic | 45.0% | |
| ! | GCTTGTTGAACTAGGCAATG+AGG | - | chr1_3:4180015-4180034 | None:intergenic | 45.0% |
| TCTTCCTTGCAGCAAAAGTC+AGG | + | chr1_3:4180238-4180257 | Msa0098240:intron | 45.0% | |
| ! | TTCTCCTGACTTTTGCTGCA+AGG | - | chr1_3:4180245-4180264 | None:intergenic | 45.0% |
| ! | GGTACACTTGCACTTTGAGA+AGG | - | chr1_3:4180314-4180333 | None:intergenic | 45.0% |
| AAGTGCAAGTGTACCTACTG+AGG | + | chr1_3:4180319-4180338 | Msa0098240:CDS | 45.0% | |
| TCATCAAAGTCGTCCTCAGT+AGG | - | chr1_3:4180335-4180354 | None:intergenic | 45.0% | |
| CTTCAAACAGAGACTTCAGC+TGG | + | chr1_3:4180649-4180668 | Msa0098240:intron | 45.0% | |
| TTCAGCTGGAATCTCAAACC+AGG | + | chr1_3:4180663-4180682 | Msa0098240:CDS | 45.0% | |
| CTTGTCCAAAGAGATCAACC+TGG | - | chr1_3:4180684-4180703 | None:intergenic | 45.0% | |
| ! | AGATTTGCTCGGTGACTTCA+TGG | + | chr1_3:4180702-4180721 | Msa0098240:CDS | 45.0% |
| ! | GTCAGAGGTTGATCTCTTTG+CGG | + | chr1_3:4180771-4180790 | Msa0098240:CDS | 45.0% |
| TGGCATGAATCTCCGTCATT+AGG | + | chr1_3:4180927-4180946 | Msa0098240:intron | 45.0% | |
| !!! | TTTTGGAGCACCAATGAAGG+TGG | - | chr1_3:4180976-4180995 | None:intergenic | 45.0% |
| TGAGACTGGAATTGTCTTGG+AGG | + | chr1_3:4181104-4181123 | Msa0098240:intron | 45.0% | |
| AGACTAGACTAGATGGAGGA+TGG | + | chr1_3:4181288-4181307 | Msa0098240:intron | 45.0% | |
| ! | CAAATTTTCCCCCACTAGGT+GGG | - | chr1_3:4181457-4181476 | None:intergenic | 45.0% |
| ! | CAACCAAATTTTCCCCCACT+AGG | - | chr1_3:4181461-4181480 | None:intergenic | 45.0% |
| ATTCCATGCTCAGGATGAAG+TGG | + | chr1_3:4181562-4181581 | Msa0098240:intron | 45.0% | |
| ! | GCCTAAAAAGGACGCTTTTC+AGG | + | chr1_3:4181865-4181884 | Msa0098240:CDS | 45.0% |
| TTCAGGTGAAGTCTGGCATT+TGG | + | chr1_3:4181882-4181901 | Msa0098240:CDS | 45.0% | |
| TCAGGTGAAGTCTGGCATTT+GGG | + | chr1_3:4181883-4181902 | Msa0098240:CDS | 45.0% | |
| GGGTGAAAACATACAGGTAC+AGG | - | chr1_3:4182029-4182048 | None:intergenic | 45.0% | |
| GGGATTCAATCTTGTGTTCC+AGG | + | chr1_3:4182143-4182162 | Msa0098240:intron | 45.0% | |
| ACATACAGGAGGAAACAACG+GGG | - | chr1_3:4182269-4182288 | None:intergenic | 45.0% | |
| CACATACAGGAGGAAACAAC+GGG | - | chr1_3:4182270-4182289 | None:intergenic | 45.0% | |
| GCACATACAGGAGGAAACAA+CGG | - | chr1_3:4182271-4182290 | None:intergenic | 45.0% | |
| ! | ACTCGTGATAGTGCACATAC+AGG | - | chr1_3:4182283-4182302 | None:intergenic | 45.0% |
| CCACAATTCCAACATCGACA+AGG | - | chr1_3:4182404-4182423 | None:intergenic | 45.0% | |
| CCTTGTCGATGTTGGAATTG+TGG | + | chr1_3:4182401-4182420 | Msa0098240:CDS | 45.0% | |
| !! | GGATCTGGTCTTGGTATGTA+TGG | + | chr1_3:4182501-4182520 | Msa0098240:CDS | 45.0% |
| !! | TCTGGTCTTGGTATGTATGG+TGG | + | chr1_3:4182504-4182523 | Msa0098240:CDS | 45.0% |
| !! | GATTGCTGAGCTTTTTGGCA+TGG | + | chr1_3:4182680-4182699 | Msa0098240:three_prime_UTR | 45.0% |
| !! | AAAAAAAAATTACAATTAAT+AGG | - | chr1_3:4180625-4180644 | None:intergenic | 5.0% |
| GCGGTGATACTAGACGAGAT+AGG | + | chr1_3:4177256-4177275 | Msa0098240:intron | 50.0% | |
| CAACCCCTAATCCCACTAAG+AGG | - | chr1_3:4177549-4177568 | None:intergenic | 50.0% | |
| CTCTTAGTGGGATTAGGGGT+TGG | + | chr1_3:4177547-4177566 | Msa0098240:intron | 50.0% | |
| GAAAAGGAGCCTTGGCAAAG+TGG | - | chr1_3:4177868-4177887 | None:intergenic | 50.0% | |
| !! | CCGATGGATTGCAGATTGTG+AGG | - | chr1_3:4178010-4178029 | None:intergenic | 50.0% |
| ! | TGTGCTGGCAGAGATTGCAA+CGG | + | chr1_3:4178112-4178131 | Msa0098240:CDS | 50.0% |
| TGAGCCTAATGGGAAGGATG+TGG | + | chr1_3:4178755-4178774 | Msa0098240:CDS | 50.0% | |
| GAGCCTAATGGGAAGGATGT+GGG | + | chr1_3:4178756-4178775 | Msa0098240:CDS | 50.0% | |
| AGTCCCACATCCTTCCCATT+AGG | - | chr1_3:4178762-4178781 | None:intergenic | 50.0% | |
| TGCTGCAAACCGTGACAAGT+AGG | + | chr1_3:4178860-4178879 | Msa0098240:intron | 50.0% | |
| GTGATAGCTACGGAGACAAG+GGG | + | chr1_3:4179098-4179117 | Msa0098240:CDS | 50.0% | |
| AAGGTTCTGCACGGTTTGTC+AGG | + | chr1_3:4179209-4179228 | Msa0098240:CDS | 50.0% | |
| TCTGCACGGTTTGTCAGGTA+TGG | + | chr1_3:4179214-4179233 | Msa0098240:intron | 50.0% | |
| CAAGAGACTGCATGGCCATA+TGG | - | chr1_3:4179572-4179591 | None:intergenic | 50.0% | |
| TTGCTGCAAGGAAGACACTC+TGG | - | chr1_3:4180233-4180252 | None:intergenic | 50.0% | |
| CTCCAAGGCCGCCAAAAAAA+CGG | + | chr1_3:4180541-4180560 | Msa0098240:intron | 50.0% | |
| !!! | TTCCGTTTTTTTGGCGGCCT+TGG | - | chr1_3:4180546-4180565 | None:intergenic | 50.0% |
| TCTGACGCATCACTAGTTGC+TGG | - | chr1_3:4180757-4180776 | None:intergenic | 50.0% | |
| AGCAACTAGTGATGCGTCAG+AGG | + | chr1_3:4180756-4180775 | Msa0098240:CDS | 50.0% | |
| TGTATCAGCAGCACCACATG+CGG | + | chr1_3:4180804-4180823 | Msa0098240:CDS | 50.0% | |
| ! | AGGAGCTAGTTCTCAACCAC+AGG | + | chr1_3:4180831-4180850 | Msa0098240:CDS | 50.0% |
| CTAGACTAGATGGAGGATGG+TGG | + | chr1_3:4181291-4181310 | Msa0098240:intron | 50.0% | |
| ! | CCAAATTTTCCCCCACTAGG+TGG | - | chr1_3:4181458-4181477 | None:intergenic | 50.0% |
| CCACCTAGTGGGGGAAAATT+TGG | + | chr1_3:4181455-4181474 | Msa0098240:intron | 50.0% | |
| GATCCACTTCATCCTGAGCA+TGG | - | chr1_3:4181568-4181587 | None:intergenic | 50.0% | |
| !!! | GAGTTTTCCGACTTGCTGTC+AGG | - | chr1_3:4181665-4181684 | None:intergenic | 50.0% |
| TCGGTGGCAGCATTAGTTGA+GGG | - | chr1_3:4181803-4181822 | None:intergenic | 50.0% | |
| ATCGGTGGCAGCATTAGTTG+AGG | - | chr1_3:4181804-4181823 | None:intergenic | 50.0% | |
| TCAACTAATGCTGCCACCGA+TGG | + | chr1_3:4181803-4181822 | Msa0098240:CDS | 50.0% | |
| ACCACTTGTACTACCATCGG+TGG | - | chr1_3:4181819-4181838 | None:intergenic | 50.0% | |
| !!! | GACGCTTTTCAGGTGAAGTC+TGG | + | chr1_3:4181875-4181894 | Msa0098240:CDS | 50.0% |
| ! | CGTGATAGTGCACATACAGG+AGG | - | chr1_3:4182280-4182299 | None:intergenic | 50.0% |
| GTCGATGTTGGAATTGTGGG+TGG | + | chr1_3:4182405-4182424 | Msa0098240:CDS | 50.0% | |
| !! | ATTGTGGGTGGACTAAGCGA+TGG | + | chr1_3:4182417-4182436 | Msa0098240:CDS | 50.0% |
| AGAGCTATGGGTACAGGATC+TGG | + | chr1_3:4182486-4182505 | Msa0098240:CDS | 50.0% | |
| ATGGGTACAGGATCTGGTCT+TGG | + | chr1_3:4182492-4182511 | Msa0098240:CDS | 50.0% | |
| ACTCCTTCACAGTCAACAGC+TGG | + | chr1_3:4182528-4182547 | Msa0098240:CDS | 50.0% | |
| ! | TCTCCAGCTGTTGACTGTGA+AGG | - | chr1_3:4182534-4182553 | None:intergenic | 50.0% |
| !! | TGCTGAGCTTTTTGGCATGG+TGG | + | chr1_3:4182683-4182702 | Msa0098240:three_prime_UTR | 50.0% |
| GCCTTGACCTTCCTTTGTTC+CGG | + | chr1_3:4182900-4182919 | Msa0098240:three_prime_UTR | 50.0% | |
| ACCGGAACAAAGGAAGGTCA+AGG | - | chr1_3:4182904-4182923 | None:intergenic | 50.0% | |
| AGGAGCCTTGGCAAAGTGGT+TGG | - | chr1_3:4177864-4177883 | None:intergenic | 55.0% | |
| GATGAACCTTGGGGTCCTCA+TGG | + | chr1_3:4178086-4178105 | Msa0098240:CDS | 55.0% | |
| ACAGTACCATGAGGACCCCA+AGG | - | chr1_3:4178095-4178114 | None:intergenic | 55.0% | |
| TCTGCCAGCACAGTACCATG+AGG | - | chr1_3:4178104-4178123 | None:intergenic | 55.0% | |
| CTAGCTCCTTTGTCCGCATG+TGG | - | chr1_3:4180820-4180839 | None:intergenic | 55.0% | |
| TGTGCAGCCTGACAGCAAGT+CGG | + | chr1_3:4181655-4181674 | Msa0098240:CDS | 55.0% | |
| GCCACCGATGGTAGTACAAG+TGG | + | chr1_3:4181815-4181834 | Msa0098240:CDS | 55.0% | |
| TACAGGAGGAAACAACGGGG+AGG | - | chr1_3:4182266-4182285 | None:intergenic | 55.0% | |
| ATGGGGAGAGCTATGGGTAC+AGG | + | chr1_3:4182480-4182499 | Msa0098240:CDS | 55.0% | |
| GGGTCCTCATGGTACTGTGC+TGG | + | chr1_3:4178097-4178116 | Msa0098240:CDS | 60.0% | |
| GCAGCACCACATGCGGACAA+AGG | + | chr1_3:4180811-4180830 | Msa0098240:CDS | 60.0% | |
| ATGCGGTCGAACCCACCTAG+TGG | + | chr1_3:4181443-4181462 | Msa0098240:intron | 60.0% | |
| TGCGGTCGAACCCACCTAGT+GGG | + | chr1_3:4181444-4181463 | Msa0098240:intron | 60.0% | |
| TTGCTGTCAGGCTGCACAGC+TGG | - | chr1_3:4181653-4181672 | None:intergenic | 60.0% | |
| !! | TGGGCTGATTCGCTAAGCCG+TGG | + | chr1_3:4181902-4181921 | Msa0098240:CDS | 60.0% |
| AGGAGGAAACAACGGGGAGG+TGG | - | chr1_3:4182263-4182282 | None:intergenic | 60.0% | |
| GCGGTCGAACCCACCTAGTG+GGG | + | chr1_3:4181445-4181464 | Msa0098240:intron | 65.0% | |
| CGGTCGAACCCACCTAGTGG+GGG | + | chr1_3:4181446-4181465 | Msa0098240:intron | 65.0% | |
| TCAGGCTGCACAGCTGGTGC+AGG | - | chr1_3:4181647-4181666 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4176579 | 4182948 | 4176579 | ID=Msa0098240;Name=Msa0098240 |
| chr1_3 | mRNA | 4176579 | 4182948 | 4176579 | ID=Msa0098240-mRNA-1;Parent=Msa0098240;Name=Msa0098240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=145|1|1|1|1|1|11|337|549 |
| chr1_3 | exon | 4176579 | 4176764 | 4176579 | ID=Msa0098240-mRNA-1:exon:1339;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4176885 | 4176936 | 4176885 | ID=Msa0098240-mRNA-1:exon:1340;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4178068 | 4178147 | 4178068 | ID=Msa0098240-mRNA-1:exon:1341;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4178341 | 4178419 | 4178341 | ID=Msa0098240-mRNA-1:exon:1342;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4178534 | 4178617 | 4178534 | ID=Msa0098240-mRNA-1:exon:1343;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4178732 | 4178877 | 4178732 | ID=Msa0098240-mRNA-1:exon:1344;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4178988 | 4179230 | 4178988 | ID=Msa0098240-mRNA-1:exon:1345;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4180250 | 4180380 | 4180250 | ID=Msa0098240-mRNA-1:exon:1346;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4180659 | 4180852 | 4180659 | ID=Msa0098240-mRNA-1:exon:1347;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4181575 | 4181950 | 4181575 | ID=Msa0098240-mRNA-1:exon:1348;Parent=Msa0098240-mRNA-1 |
| chr1_3 | exon | 4182388 | 4182948 | 4182388 | ID=Msa0098240-mRNA-1:exon:1349;Parent=Msa0098240-mRNA-1 |
| chr1_3 | five_prime_UTR | 4176579 | 4176723 | 4176579 | ID=Msa0098240-mRNA-1:five_prime_utr;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4176724 | 4176764 | 4176724 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4176885 | 4176936 | 4176885 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4178068 | 4178147 | 4178068 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4178341 | 4178419 | 4178341 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4178534 | 4178617 | 4178534 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4178732 | 4178877 | 4178732 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4178988 | 4179230 | 4178988 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4180250 | 4180380 | 4180250 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4180659 | 4180852 | 4180659 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4181575 | 4181950 | 4181575 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | CDS | 4182388 | 4182611 | 4182388 | ID=Msa0098240-mRNA-1:cds;Parent=Msa0098240-mRNA-1 |
| chr1_3 | three_prime_UTR | 4182612 | 4182948 | 4182612 | ID=Msa0098240-mRNA-1:three_prime_utr;Parent=Msa0098240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
