Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0545020 | XP_013455748.1 | 97.452 | 314 | 8 | 0 | 1 | 314 | 47 | 360 | 0.0 | 628 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0545020 | sp|Q54NS9|AIFA_DICDI | 31.722 | 331 | 190 | 9 | 1 | 300 | 71 | 396 | 2.13e-41 | 151 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0545020 | A0A072UJ51 | 97.452 | 314 | 8 | 0 | 1 | 314 | 47 | 360 | 0.0 | 628 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026630 | Msa0545020 | 0.806391 | 8.415160e-50 | -8.615850e-47 |
Msa0033840 | Msa0545020 | -0.807658 | 4.538802e-50 | -8.615850e-47 |
Msa0043850 | Msa0545020 | 0.820220 | 7.696319e-53 | -8.615850e-47 |
Msa0052360 | Msa0545020 | 0.841165 | 5.606509e-58 | -8.615850e-47 |
Msa0082420 | Msa0545020 | 0.827697 | 1.356149e-54 | -8.615850e-47 |
Msa0090510 | Msa0545020 | 0.838145 | 3.421052e-57 | -8.615850e-47 |
Msa0094710 | Msa0545020 | 0.802458 | 5.557985e-49 | -8.615850e-47 |
Msa0097370 | Msa0545020 | 0.844460 | 7.455977e-59 | -8.615850e-47 |
Msa0137980 | Msa0545020 | 0.818520 | 1.877819e-52 | -8.615850e-47 |
Msa0160960 | Msa0545020 | 0.800797 | 1.217764e-48 | -8.615850e-47 |
Msa0183910 | Msa0545020 | 0.830665 | 2.583424e-55 | -8.615850e-47 |
Msa0194920 | Msa0545020 | 0.826489 | 2.638095e-54 | -8.615850e-47 |
Msa0196880 | Msa0545020 | 0.804110 | 2.528533e-49 | -8.615850e-47 |
Msa0224130 | Msa0545020 | 0.814961 | 1.180063e-51 | -8.615850e-47 |
Msa0231800 | Msa0545020 | 0.801098 | 1.056843e-48 | -8.615850e-47 |
Msa0236920 | Msa0545020 | 0.822175 | 2.726363e-53 | -8.615850e-47 |
Msa0374890 | Msa0545020 | 0.804168 | 2.459299e-49 | -8.615850e-47 |
Msa0382370 | Msa0545020 | 0.807804 | 4.225509e-50 | -8.615850e-47 |
Msa0388730 | Msa0545020 | 0.817133 | 3.862763e-52 | -8.615850e-47 |
Msa0432160 | Msa0545020 | 0.800850 | 1.187918e-48 | -8.615850e-47 |
Msa0476680 | Msa0545020 | 0.806350 | 8.584207e-50 | -8.615850e-47 |
Msa0264680 | Msa0545020 | 0.800399 | 1.468065e-48 | -8.615850e-47 |
Msa0265270 | Msa0545020 | 0.809714 | 1.650881e-50 | -8.615850e-47 |
Msa0276430 | Msa0545020 | 0.804942 | 1.695207e-49 | -8.615850e-47 |
Msa0302730 | Msa0545020 | 0.824759 | 6.781257e-54 | -8.615850e-47 |
Msa0332190 | Msa0545020 | 0.819503 | 1.122215e-52 | -8.615850e-47 |
Msa0332200 | Msa0545020 | 0.814984 | 1.166439e-51 | -8.615850e-47 |
Msa0484800 | Msa0545020 | 0.807651 | 4.554319e-50 | -8.615850e-47 |
Msa0521010 | Msa0545020 | 0.805459 | 1.321399e-49 | -8.615850e-47 |
Msa0545020 | Msa0545050 | 0.879103 | 1.637094e-69 | -8.615850e-47 |
Msa0545020 | Msa0567370 | 0.812054 | 5.140702e-51 | -8.615850e-47 |
Msa0545020 | Msa0592330 | 0.822889 | 1.860536e-53 | -8.615850e-47 |
Msa0545020 | Msa0600590 | 0.878570 | 2.522723e-69 | -8.615850e-47 |
Msa0545020 | Msa0604290 | 0.803616 | 3.201380e-49 | -8.615850e-47 |
Msa0545020 | Msa0611060 | 0.820719 | 5.913123e-53 | -8.615850e-47 |
Msa0545020 | Msa0641130 | 0.865271 | 6.662623e-65 | -8.615850e-47 |
Msa0545020 | Msa0679670 | 0.864256 | 1.385764e-64 | -8.615850e-47 |
Msa0545020 | Msa0697680 | 0.812153 | 4.891823e-51 | -8.615850e-47 |
Msa0545020 | Msa0703810 | 0.807248 | 5.545863e-50 | -8.615850e-47 |
Msa0545020 | Msa0744640 | 0.846565 | 2.005029e-59 | -8.615850e-47 |
Msa0545020 | Msa0796580 | -0.803699 | 3.077453e-49 | -8.615850e-47 |
Msa0545020 | Msa0841730 | 0.846314 | 2.347925e-59 | -8.615850e-47 |
Msa0545020 | Msa0863990 | 0.822874 | 1.875188e-53 | -8.615850e-47 |
Msa0545020 | Msa0982090 | -0.804550 | 2.046977e-49 | -8.615850e-47 |
Msa0545020 | Msa1011250 | 0.804900 | 1.730311e-49 | -8.615850e-47 |
Msa0545020 | Msa1022030 | 0.827468 | 1.538446e-54 | -8.615850e-47 |
Msa0545020 | Msa1023310 | 0.812094 | 5.039401e-51 | -8.615850e-47 |
Msa0545020 | Msa1062040 | 0.866725 | 2.310749e-65 | -8.615850e-47 |
Msa0545020 | Msa1063360 | 0.809796 | 1.585425e-50 | -8.615850e-47 |
Msa0545020 | Msa1070540 | 0.815752 | 7.869869e-52 | -8.615850e-47 |
Msa0545020 | Msa1089190 | 0.801997 | 6.914414e-49 | -8.615850e-47 |
Msa0545020 | Msa1096070 | 0.810698 | 1.012927e-50 | -8.615850e-47 |
Msa0545020 | Msa1101240 | 0.812939 | 3.293134e-51 | -8.615850e-47 |
Msa0545020 | Msa1107200 | 0.843701 | 1.191653e-58 | -8.615850e-47 |
Msa0545020 | Msa1109810 | 0.818328 | 2.076364e-52 | -8.615850e-47 |
Msa0545020 | Msa1150780 | 0.824441 | 8.059763e-54 | -8.615850e-47 |
Msa0545020 | Msa1180720 | 0.822697 | 2.062312e-53 | -8.615850e-47 |
Msa0545020 | Msa1184690 | 0.817327 | 3.493406e-52 | -8.615850e-47 |
Msa0545020 | Msa1208990 | 0.811178 | 7.973748e-51 | -8.615850e-47 |
Msa0545020 | Msa1221630 | 0.803218 | 3.871494e-49 | -8.615850e-47 |
Msa0545020 | Msa1225580 | 0.811630 | 6.359400e-51 | -8.615850e-47 |
Msa0545020 | Msa1229480 | 0.829971 | 3.818734e-55 | -8.615850e-47 |
Msa0545020 | Msa1231710 | 0.811668 | 6.240758e-51 | -8.615850e-47 |
Msa0545020 | Msa1272010 | 0.812763 | 3.599110e-51 | -8.615850e-47 |
Msa0545020 | Msa1312440 | 0.813704 | 2.237446e-51 | -8.615850e-47 |
Msa0545020 | Msa1339320 | 0.800116 | 1.675913e-48 | -8.615850e-47 |
Msa0545020 | Msa1355510 | 0.800281 | 1.551612e-48 | -8.615850e-47 |
Msa0545020 | Msa1364080 | 0.811406 | 7.112275e-51 | -8.615850e-47 |
Msa0545020 | Msa1369920 | -0.823845 | 1.112431e-53 | -8.615850e-47 |
Msa0545020 | Msa1370810 | 0.807432 | 5.070474e-50 | -8.615850e-47 |
Msa0545020 | Msa1382380 | -0.805010 | 1.640599e-49 | -8.615850e-47 |
Msa0545020 | Msa1407760 | 0.826359 | 2.832869e-54 | -8.615850e-47 |
Msa0545020 | Msa1407880 | 0.809594 | 1.751856e-50 | -8.615850e-47 |
Msa0545020 | Msa1418970 | 0.823974 | 1.037359e-53 | -8.615850e-47 |
Msa0545020 | Msa1437730 | 0.811145 | 8.105886e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0545020 | MtrunA17_Chr4g0025621 | 97.452 | 314 | 8 | 0 | 1 | 314 | 47 | 360 | 0.0 | 628 |
Msa0545020 | MtrunA17_Chr4g0025661 | 66.987 | 312 | 101 | 2 | 1 | 311 | 50 | 360 | 1.21e-154 | 437 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0545020 | AT3G44190.2 | 63.344 | 311 | 113 | 1 | 1 | 311 | 1 | 310 | 4.54e-147 | 416 |
Msa0545020 | AT5G22140.2 | 64.309 | 311 | 110 | 1 | 1 | 311 | 1 | 310 | 6.34e-147 | 416 |
Msa0545020 | AT3G44190.1 | 63.344 | 311 | 113 | 1 | 1 | 311 | 55 | 364 | 2.74e-146 | 416 |
Msa0545020 | AT5G22140.1 | 64.309 | 311 | 110 | 1 | 1 | 311 | 55 | 364 | 4.77e-146 | 416 |
Find 60 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCAATAGTTTCAGATTCT+TGG | 0.196415 | 4_1:+34481742 | None:intergenic |
AATGTCTTTCTTGAAGCTTT+TGG | 0.265463 | 4_1:+34482443 | None:intergenic |
ACTCCTTCACAAATGAAAAT+AGG | 0.292255 | 4_1:-34482364 | Msa0545020:CDS |
CTTCAAGAAAGACATTAAAA+TGG | 0.321115 | 4_1:-34482436 | Msa0545020:CDS |
ACAATTGTTGGAAGACTTCC+TGG | 0.349182 | 4_1:-34481614 | Msa0545020:CDS |
TTCAGATTCAGTTATGTTGA+TGG | 0.355713 | 4_1:+34483083 | None:intergenic |
GGAGCGAAAGAACGTAAATT+AGG | 0.359944 | 4_1:-34481713 | Msa0545020:CDS |
TCAAGATTGCTAGAATATAT+TGG | 0.361205 | 4_1:-34482467 | Msa0545020:CDS |
CCAAGTGAAACAATAGATAT+TGG | 0.377879 | 4_1:+34481671 | None:intergenic |
TTTCCTTTCATGACAATTGT+TGG | 0.378561 | 4_1:-34481626 | Msa0545020:CDS |
GGGAAAACAAGAAAGGGATT+AGG | 0.385570 | 4_1:-34481563 | Msa0545020:CDS |
ATTGCTTACCTCCTTTGTAT+TGG | 0.393585 | 4_1:+34482962 | None:intergenic |
GATTATCTTGTTATCGCAAC+TGG | 0.394119 | 4_1:-34483027 | Msa0545020:CDS |
GGAAAACAAGAAAGGGATTA+GGG | 0.398328 | 4_1:-34481562 | Msa0545020:CDS |
TATTGGTGGTTGTGCCTTGT+AGG | 0.413298 | 4_1:+34481688 | None:intergenic |
CTCTCAAGTATTCATCAACT+TGG | 0.419612 | 4_1:+34482213 | None:intergenic |
AGTCAGGAGATTTGTTTGTT+GGG | 0.428035 | 4_1:-34481583 | Msa0545020:CDS |
TATCTATTGTTTCACTTGGA+AGG | 0.431104 | 4_1:-34481667 | Msa0545020:CDS |
TTTCGCTATTGGAGACATTA+CGG | 0.432085 | 4_1:-34482171 | Msa0545020:CDS |
AAGTCAGGAGATTTGTTTGT+TGG | 0.437062 | 4_1:-34481584 | Msa0545020:CDS |
GTTTGTTGGGAAAACAAGAA+AGG | 0.452444 | 4_1:-34481570 | Msa0545020:CDS |
ATTGTTGGTGGAGGTCCAAC+TGG | 0.452939 | 4_1:-34482557 | Msa0545020:CDS |
AATCTGAAACTATTGATAGA+AGG | 0.453316 | 4_1:-34481737 | Msa0545020:CDS |
TTTGTTGGGAAAACAAGAAA+GGG | 0.460435 | 4_1:-34481569 | Msa0545020:CDS |
CTTCCTGGTATGATCAAGTC+AGG | 0.460740 | 4_1:-34481599 | Msa0545020:CDS |
CCAATATCTATTGTTTCACT+TGG | 0.467044 | 4_1:-34481671 | Msa0545020:CDS |
TGCGATAACAAGATAATCAT+AGG | 0.469385 | 4_1:+34483032 | None:intergenic |
CATAGAGAATATTTCACAAA+AGG | 0.477184 | 4_1:-34483126 | Msa0545020:CDS |
CATTAAAATGGCTTCAATCA+AGG | 0.485208 | 4_1:-34482424 | Msa0545020:CDS |
AGGACTTATCAAACTTCGGT+TGG | 0.486951 | 4_1:-34482344 | Msa0545020:CDS |
AAAGTGACTATAGTGCATAA+AGG | 0.487929 | 4_1:-34482491 | Msa0545020:CDS |
CCTAGCCATGCTGTGGAAAG+TGG | 0.493960 | 4_1:+34482278 | None:intergenic |
AAAGATGATTTGGATGGTCA+TGG | 0.509883 | 4_1:-34482242 | Msa0545020:CDS |
GATGAATACTTGAGAGTGAA+GGG | 0.516573 | 4_1:-34482206 | Msa0545020:CDS |
GATCACTGTCCTTTCTGCGA+AGG | 0.531450 | 4_1:+34483152 | None:intergenic |
GTTTCACTTGGAAGGAAACA+TGG | 0.536683 | 4_1:-34481659 | Msa0545020:CDS |
TCTGAAGTCTTCACTGCTGA+TGG | 0.538947 | 4_1:-34483066 | Msa0545020:CDS |
CTTCCAACAATTGTCATGAA+AGG | 0.545832 | 4_1:+34481623 | None:intergenic |
TGATGAATACTTGAGAGTGA+AGG | 0.546458 | 4_1:-34482207 | Msa0545020:CDS |
ACTGTCCTTTCTGCGAAGGA+TGG | 0.552774 | 4_1:+34483156 | None:intergenic |
AAATAGGACTTATCAAACTT+CGG | 0.554684 | 4_1:-34482348 | Msa0545020:CDS |
TGGAGCCATCCTTCGCAGAA+AGG | 0.564663 | 4_1:-34483161 | Msa0545020:CDS |
AGTGAAACAATAGATATTGG+TGG | 0.570389 | 4_1:+34481674 | None:intergenic |
TCTCCTGACTTGATCATACC+AGG | 0.577444 | 4_1:+34481596 | None:intergenic |
CCACTTTCCACAGCATGGCT+AGG | 0.590873 | 4_1:-34482278 | Msa0545020:CDS |
GCTGCTAGCTCAACACCAGT+TGG | 0.599083 | 4_1:+34482542 | None:intergenic |
AATACTTGAGAGTGAAGGGA+AGG | 0.600149 | 4_1:-34482202 | Msa0545020:CDS |
CTGAAACTATTGATAGAAGG+AGG | 0.602874 | 4_1:-34481734 | Msa0545020:CDS |
GAAAGACTTGACCAATACAA+AGG | 0.625608 | 4_1:-34482973 | Msa0545020:CDS |
AAGATGATTTGGATGGTCAT+GGG | 0.626015 | 4_1:-34482241 | Msa0545020:CDS |
AGTTTCACCTAGCCATGCTG+TGG | 0.627017 | 4_1:+34482271 | None:intergenic |
GATAATCATAGGTGATCTGA+CGG | 0.632076 | 4_1:+34483043 | None:intergenic |
GGAAACCACTTTCCACAGCA+TGG | 0.632481 | 4_1:-34482283 | Msa0545020:CDS |
ACGTAAATTAGGTACCTACA+AGG | 0.632721 | 4_1:-34481702 | Msa0545020:CDS |
TGAGCTAGCAGCAGAGATTG+CGG | 0.644801 | 4_1:-34482531 | Msa0545020:CDS |
TGATGGCACTTGATATAACA+AGG | 0.655923 | 4_1:+34483100 | None:intergenic |
AGACTTGACCAATACAAAGG+AGG | 0.681103 | 4_1:-34482970 | Msa0545020:intron |
ATGATTTGGATGGTCATGGG+AGG | 0.683773 | 4_1:-34482238 | Msa0545020:CDS |
AAACAAGGAGTGTATGCACA+AGG | 0.686146 | 4_1:-34481782 | Msa0545020:CDS |
ATGTTACAGGAAATCAAACA+AGG | 0.698106 | 4_1:-34481797 | Msa0545020:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTGAAATATATGTTAC+AGG | - | chr4_1:34482890-34482909 | Msa0545020:intron | 15.0% |
!! | AAAATTGAAATATATGTTAC+AGG | - | chr4_1:34482890-34482909 | Msa0545020:intron | 15.0% |
!!! | ATACACATTTTCTATGTATA+GGG | - | chr4_1:34482396-34482415 | Msa0545020:CDS | 20.0% |
!!! | AACTTTTTTGAAAGATGATT+TGG | - | chr4_1:34482448-34482467 | Msa0545020:CDS | 20.0% |
!!! | ATACACATTTTCTATGTATA+GGG | - | chr4_1:34482396-34482415 | Msa0545020:CDS | 20.0% |
!!! | AACTTTTTTGAAAGATGATT+TGG | - | chr4_1:34482448-34482467 | Msa0545020:CDS | 20.0% |
!! | CTTTTGTGAAATATTCTCTA+TGG | + | chr4_1:34481576-34481595 | None:intergenic | 25.0% |
! | CATAGAGAATATTTCACAAA+AGG | - | chr4_1:34481574-34481593 | Msa0545020:CDS | 25.0% |
! | GGAATTGTTAATTAATTGCA+TGG | + | chr4_1:34481803-34481822 | None:intergenic | 25.0% |
!!! | ACTATAGTCACTTTTTTATC+AGG | + | chr4_1:34482203-34482222 | None:intergenic | 25.0% |
! | TCAAGATTGCTAGAATATAT+TGG | - | chr4_1:34482233-34482252 | Msa0545020:CDS | 25.0% |
! | CTTCAAGAAAGACATTAAAA+TGG | - | chr4_1:34482264-34482283 | Msa0545020:CDS | 25.0% |
! | AAATAGGACTTATCAAACTT+CGG | - | chr4_1:34482352-34482371 | Msa0545020:CDS | 25.0% |
!! | GATACACATTTTCTATGTAT+AGG | - | chr4_1:34482395-34482414 | Msa0545020:CDS | 25.0% |
!!! | TTTTTGAAAGATGATTTGGA+TGG | - | chr4_1:34482452-34482471 | Msa0545020:CDS | 25.0% |
! | TTAACATATGCGTATTATTG+CGG | + | chr4_1:34482851-34482870 | None:intergenic | 25.0% |
! | TATCAATAGTTTCAGATTCT+TGG | + | chr4_1:34482961-34482980 | None:intergenic | 25.0% |
!! | AATCTGAAACTATTGATAGA+AGG | - | chr4_1:34482963-34482982 | Msa0545020:intron | 25.0% |
!! | CTTTTGTGAAATATTCTCTA+TGG | + | chr4_1:34481576-34481595 | None:intergenic | 25.0% |
! | CATAGAGAATATTTCACAAA+AGG | - | chr4_1:34481574-34481593 | Msa0545020:CDS | 25.0% |
! | GGAATTGTTAATTAATTGCA+TGG | + | chr4_1:34481803-34481822 | None:intergenic | 25.0% |
!!! | ACTATAGTCACTTTTTTATC+AGG | + | chr4_1:34482203-34482222 | None:intergenic | 25.0% |
! | TCAAGATTGCTAGAATATAT+TGG | - | chr4_1:34482233-34482252 | Msa0545020:CDS | 25.0% |
! | CTTCAAGAAAGACATTAAAA+TGG | - | chr4_1:34482264-34482283 | Msa0545020:CDS | 25.0% |
! | AAATAGGACTTATCAAACTT+CGG | - | chr4_1:34482352-34482371 | Msa0545020:CDS | 25.0% |
!! | GATACACATTTTCTATGTAT+AGG | - | chr4_1:34482395-34482414 | Msa0545020:CDS | 25.0% |
!!! | TTTTTGAAAGATGATTTGGA+TGG | - | chr4_1:34482452-34482471 | Msa0545020:CDS | 25.0% |
! | TTAACATATGCGTATTATTG+CGG | + | chr4_1:34482851-34482870 | None:intergenic | 25.0% |
! | TATCAATAGTTTCAGATTCT+TGG | + | chr4_1:34482961-34482980 | None:intergenic | 25.0% |
!! | AATCTGAAACTATTGATAGA+AGG | - | chr4_1:34482963-34482982 | Msa0545020:intron | 25.0% |
TTCAGATTCAGTTATGTTGA+TGG | + | chr4_1:34481620-34481639 | None:intergenic | 30.0% | |
TGCGATAACAAGATAATCAT+AGG | + | chr4_1:34481671-34481690 | None:intergenic | 30.0% | |
TCGATTTCATATGAGTGATA+AGG | - | chr4_1:34482064-34482083 | Msa0545020:intron | 30.0% | |
AAAGTGACTATAGTGCATAA+AGG | - | chr4_1:34482209-34482228 | Msa0545020:CDS | 30.0% | |
! | AATGTCTTTCTTGAAGCTTT+TGG | + | chr4_1:34482260-34482279 | None:intergenic | 30.0% |
CATTAAAATGGCTTCAATCA+AGG | - | chr4_1:34482276-34482295 | Msa0545020:CDS | 30.0% | |
ACTCCTTCACAAATGAAAAT+AGG | - | chr4_1:34482336-34482355 | Msa0545020:CDS | 30.0% | |
! | AGTCCTATTTTCATTTGTGA+AGG | + | chr4_1:34482342-34482361 | None:intergenic | 30.0% |
TAAAAGACGACGAATTGAAT+TGG | + | chr4_1:34482580-34482599 | None:intergenic | 30.0% | |
GCAATAATACGCATATGTTA+AGG | - | chr4_1:34482850-34482869 | Msa0545020:intron | 30.0% | |
ATGTTACAGGAAATCAAACA+AGG | - | chr4_1:34482903-34482922 | Msa0545020:intron | 30.0% | |
AGTGAAACAATAGATATTGG+TGG | + | chr4_1:34483029-34483048 | None:intergenic | 30.0% | |
CCAAGTGAAACAATAGATAT+TGG | + | chr4_1:34483032-34483051 | None:intergenic | 30.0% | |
CCAATATCTATTGTTTCACT+TGG | - | chr4_1:34483029-34483048 | Msa0545020:CDS | 30.0% | |
TATCTATTGTTTCACTTGGA+AGG | - | chr4_1:34483033-34483052 | Msa0545020:CDS | 30.0% | |
TTTCCTTTCATGACAATTGT+TGG | - | chr4_1:34483074-34483093 | Msa0545020:CDS | 30.0% | |
TTTGTTGGGAAAACAAGAAA+GGG | - | chr4_1:34483131-34483150 | Msa0545020:CDS | 30.0% | |
TTCAGATTCAGTTATGTTGA+TGG | + | chr4_1:34481620-34481639 | None:intergenic | 30.0% | |
TGCGATAACAAGATAATCAT+AGG | + | chr4_1:34481671-34481690 | None:intergenic | 30.0% | |
TCGATTTCATATGAGTGATA+AGG | - | chr4_1:34482064-34482083 | Msa0545020:intron | 30.0% | |
AAAGTGACTATAGTGCATAA+AGG | - | chr4_1:34482209-34482228 | Msa0545020:CDS | 30.0% | |
! | AATGTCTTTCTTGAAGCTTT+TGG | + | chr4_1:34482260-34482279 | None:intergenic | 30.0% |
CATTAAAATGGCTTCAATCA+AGG | - | chr4_1:34482276-34482295 | Msa0545020:CDS | 30.0% | |
ACTCCTTCACAAATGAAAAT+AGG | - | chr4_1:34482336-34482355 | Msa0545020:CDS | 30.0% | |
! | AGTCCTATTTTCATTTGTGA+AGG | + | chr4_1:34482342-34482361 | None:intergenic | 30.0% |
TAAAAGACGACGAATTGAAT+TGG | + | chr4_1:34482580-34482599 | None:intergenic | 30.0% | |
GCAATAATACGCATATGTTA+AGG | - | chr4_1:34482850-34482869 | Msa0545020:intron | 30.0% | |
ATGTTACAGGAAATCAAACA+AGG | - | chr4_1:34482903-34482922 | Msa0545020:intron | 30.0% | |
AGTGAAACAATAGATATTGG+TGG | + | chr4_1:34483029-34483048 | None:intergenic | 30.0% | |
CCAAGTGAAACAATAGATAT+TGG | + | chr4_1:34483032-34483051 | None:intergenic | 30.0% | |
CCAATATCTATTGTTTCACT+TGG | - | chr4_1:34483029-34483048 | Msa0545020:CDS | 30.0% | |
TATCTATTGTTTCACTTGGA+AGG | - | chr4_1:34483033-34483052 | Msa0545020:CDS | 30.0% | |
TTTCCTTTCATGACAATTGT+TGG | - | chr4_1:34483074-34483093 | Msa0545020:CDS | 30.0% | |
TTTGTTGGGAAAACAAGAAA+GGG | - | chr4_1:34483131-34483150 | Msa0545020:CDS | 30.0% | |
TGATGGCACTTGATATAACA+AGG | + | chr4_1:34481603-34481622 | None:intergenic | 35.0% | |
GATAATCATAGGTGATCTGA+CGG | + | chr4_1:34481660-34481679 | None:intergenic | 35.0% | |
! | GATTATCTTGTTATCGCAAC+TGG | - | chr4_1:34481673-34481692 | Msa0545020:CDS | 35.0% |
CAGAATCTATCCCAAAAACA+AGG | - | chr4_1:34481701-34481720 | Msa0545020:CDS | 35.0% | |
!!! | GTCTTTCAGTCCTTGTTTTT+GGG | + | chr4_1:34481714-34481733 | None:intergenic | 35.0% |
!!! | AGTCTTTCAGTCCTTGTTTT+TGG | + | chr4_1:34481715-34481734 | None:intergenic | 35.0% |
GAAAGACTTGACCAATACAA+AGG | - | chr4_1:34481727-34481746 | Msa0545020:CDS | 35.0% | |
ATTGCTTACCTCCTTTGTAT+TGG | + | chr4_1:34481741-34481760 | None:intergenic | 35.0% | |
! | ACTGTCACTTGACACAAATA+GGG | + | chr4_1:34482033-34482052 | None:intergenic | 35.0% |
! | AACTGTCACTTGACACAAAT+AGG | + | chr4_1:34482034-34482053 | None:intergenic | 35.0% |
! | AAAGATGATTTGGATGGTCA+TGG | - | chr4_1:34482458-34482477 | Msa0545020:CDS | 35.0% |
! | AAGATGATTTGGATGGTCAT+GGG | - | chr4_1:34482459-34482478 | Msa0545020:CDS | 35.0% |
CTCTCAAGTATTCATCAACT+TGG | + | chr4_1:34482490-34482509 | None:intergenic | 35.0% | |
TGATGAATACTTGAGAGTGA+AGG | - | chr4_1:34482493-34482512 | Msa0545020:CDS | 35.0% | |
GATGAATACTTGAGAGTGAA+GGG | - | chr4_1:34482494-34482513 | Msa0545020:CDS | 35.0% | |
TTTCGCTATTGGAGACATTA+CGG | - | chr4_1:34482529-34482548 | Msa0545020:CDS | 35.0% | |
!! | ACGACGAATTGAATTGGTTT+TGG | + | chr4_1:34482574-34482593 | None:intergenic | 35.0% |
! | CGTCGTCTTTTATTATCTCT+AGG | - | chr4_1:34482588-34482607 | Msa0545020:CDS | 35.0% |
!!! | ACTGTTATTTTCCGCTATCT+GGG | + | chr4_1:34482822-34482841 | None:intergenic | 35.0% |
!!! | AACTGTTATTTTCCGCTATC+TGG | + | chr4_1:34482823-34482842 | None:intergenic | 35.0% |
CTGAAACTATTGATAGAAGG+AGG | - | chr4_1:34482966-34482985 | Msa0545020:intron | 35.0% | |
ACGTAAATTAGGTACCTACA+AGG | - | chr4_1:34482998-34483017 | Msa0545020:CDS | 35.0% | |
CTTCCAACAATTGTCATGAA+AGG | + | chr4_1:34483080-34483099 | None:intergenic | 35.0% | |
! | AAGTCAGGAGATTTGTTTGT+TGG | - | chr4_1:34483116-34483135 | Msa0545020:CDS | 35.0% |
! | AGTCAGGAGATTTGTTTGTT+GGG | - | chr4_1:34483117-34483136 | Msa0545020:CDS | 35.0% |
! | GTTTGTTGGGAAAACAAGAA+AGG | - | chr4_1:34483130-34483149 | Msa0545020:CDS | 35.0% |
GGAAAACAAGAAAGGGATTA+GGG | - | chr4_1:34483138-34483157 | Msa0545020:CDS | 35.0% | |
TGATGGCACTTGATATAACA+AGG | + | chr4_1:34481603-34481622 | None:intergenic | 35.0% | |
GATAATCATAGGTGATCTGA+CGG | + | chr4_1:34481660-34481679 | None:intergenic | 35.0% | |
! | GATTATCTTGTTATCGCAAC+TGG | - | chr4_1:34481673-34481692 | Msa0545020:CDS | 35.0% |
CAGAATCTATCCCAAAAACA+AGG | - | chr4_1:34481701-34481720 | Msa0545020:CDS | 35.0% | |
!!! | GTCTTTCAGTCCTTGTTTTT+GGG | + | chr4_1:34481714-34481733 | None:intergenic | 35.0% |
!!! | AGTCTTTCAGTCCTTGTTTT+TGG | + | chr4_1:34481715-34481734 | None:intergenic | 35.0% |
GAAAGACTTGACCAATACAA+AGG | - | chr4_1:34481727-34481746 | Msa0545020:CDS | 35.0% | |
ATTGCTTACCTCCTTTGTAT+TGG | + | chr4_1:34481741-34481760 | None:intergenic | 35.0% | |
! | ACTGTCACTTGACACAAATA+GGG | + | chr4_1:34482033-34482052 | None:intergenic | 35.0% |
! | AACTGTCACTTGACACAAAT+AGG | + | chr4_1:34482034-34482053 | None:intergenic | 35.0% |
! | AAAGATGATTTGGATGGTCA+TGG | - | chr4_1:34482458-34482477 | Msa0545020:CDS | 35.0% |
! | AAGATGATTTGGATGGTCAT+GGG | - | chr4_1:34482459-34482478 | Msa0545020:CDS | 35.0% |
CTCTCAAGTATTCATCAACT+TGG | + | chr4_1:34482490-34482509 | None:intergenic | 35.0% | |
TGATGAATACTTGAGAGTGA+AGG | - | chr4_1:34482493-34482512 | Msa0545020:CDS | 35.0% | |
GATGAATACTTGAGAGTGAA+GGG | - | chr4_1:34482494-34482513 | Msa0545020:CDS | 35.0% | |
TTTCGCTATTGGAGACATTA+CGG | - | chr4_1:34482529-34482548 | Msa0545020:CDS | 35.0% | |
!! | ACGACGAATTGAATTGGTTT+TGG | + | chr4_1:34482574-34482593 | None:intergenic | 35.0% |
! | CGTCGTCTTTTATTATCTCT+AGG | - | chr4_1:34482588-34482607 | Msa0545020:CDS | 35.0% |
!!! | ACTGTTATTTTCCGCTATCT+GGG | + | chr4_1:34482822-34482841 | None:intergenic | 35.0% |
!!! | AACTGTTATTTTCCGCTATC+TGG | + | chr4_1:34482823-34482842 | None:intergenic | 35.0% |
CTGAAACTATTGATAGAAGG+AGG | - | chr4_1:34482966-34482985 | Msa0545020:intron | 35.0% | |
ACGTAAATTAGGTACCTACA+AGG | - | chr4_1:34482998-34483017 | Msa0545020:CDS | 35.0% | |
CTTCCAACAATTGTCATGAA+AGG | + | chr4_1:34483080-34483099 | None:intergenic | 35.0% | |
! | AAGTCAGGAGATTTGTTTGT+TGG | - | chr4_1:34483116-34483135 | Msa0545020:CDS | 35.0% |
! | AGTCAGGAGATTTGTTTGTT+GGG | - | chr4_1:34483117-34483136 | Msa0545020:CDS | 35.0% |
! | GTTTGTTGGGAAAACAAGAA+AGG | - | chr4_1:34483130-34483149 | Msa0545020:CDS | 35.0% |
GGAAAACAAGAAAGGGATTA+GGG | - | chr4_1:34483138-34483157 | Msa0545020:CDS | 35.0% | |
AGACTTGACCAATACAAAGG+AGG | - | chr4_1:34481730-34481749 | Msa0545020:CDS | 40.0% | |
CTGCATCAATTGCTAGAACT+TGG | - | chr4_1:34481774-34481793 | Msa0545020:CDS | 40.0% | |
GTTGTTTGGTTGCGATTGAA+CGG | - | chr4_1:34481851-34481870 | Msa0545020:intron | 40.0% | |
!!! | GCACGTTCAGTTTTGATTGT+TGG | - | chr4_1:34482128-34482147 | Msa0545020:intron | 40.0% |
!!! | CGTTCAGTTTTGATTGTTGG+TGG | - | chr4_1:34482131-34482150 | Msa0545020:intron | 40.0% |
!!! | TCAGTTTTGATTGTTGGTGG+AGG | - | chr4_1:34482134-34482153 | Msa0545020:intron | 40.0% |
AGGACTTATCAAACTTCGGT+TGG | - | chr4_1:34482356-34482375 | Msa0545020:CDS | 40.0% | |
AATACTTGAGAGTGAAGGGA+AGG | - | chr4_1:34482498-34482517 | Msa0545020:CDS | 40.0% | |
! | AGGAACAACGTTTTCGCTAT+TGG | - | chr4_1:34482518-34482537 | Msa0545020:CDS | 40.0% |
CATGCAGTGTTGTCAAATAG+TGG | - | chr4_1:34482631-34482650 | Msa0545020:intron | 40.0% | |
GTCAAATAGTGGCATAGTAG+CGG | - | chr4_1:34482642-34482661 | Msa0545020:intron | 40.0% | |
GATACGCTATTTAGCACAGA+TGG | - | chr4_1:34482692-34482711 | Msa0545020:intron | 40.0% | |
CTATTGTCAATCCCAGATAG+CGG | - | chr4_1:34482808-34482827 | Msa0545020:intron | 40.0% | |
! | AAACAAGGAGTGTATGCACA+AGG | - | chr4_1:34482918-34482937 | Msa0545020:intron | 40.0% |
GGAGCGAAAGAACGTAAATT+AGG | - | chr4_1:34482987-34483006 | Msa0545020:CDS | 40.0% | |
GTTTCACTTGGAAGGAAACA+TGG | - | chr4_1:34483041-34483060 | Msa0545020:CDS | 40.0% | |
ACAATTGTTGGAAGACTTCC+TGG | - | chr4_1:34483086-34483105 | Msa0545020:CDS | 40.0% | |
GGGAAAACAAGAAAGGGATT+AGG | - | chr4_1:34483137-34483156 | Msa0545020:CDS | 40.0% | |
AGACTTGACCAATACAAAGG+AGG | - | chr4_1:34481730-34481749 | Msa0545020:CDS | 40.0% | |
CTGCATCAATTGCTAGAACT+TGG | - | chr4_1:34481774-34481793 | Msa0545020:CDS | 40.0% | |
GTTGTTTGGTTGCGATTGAA+CGG | - | chr4_1:34481851-34481870 | Msa0545020:intron | 40.0% | |
!!! | GCACGTTCAGTTTTGATTGT+TGG | - | chr4_1:34482128-34482147 | Msa0545020:intron | 40.0% |
!!! | CGTTCAGTTTTGATTGTTGG+TGG | - | chr4_1:34482131-34482150 | Msa0545020:intron | 40.0% |
!!! | TCAGTTTTGATTGTTGGTGG+AGG | - | chr4_1:34482134-34482153 | Msa0545020:intron | 40.0% |
AGGACTTATCAAACTTCGGT+TGG | - | chr4_1:34482356-34482375 | Msa0545020:CDS | 40.0% | |
AATACTTGAGAGTGAAGGGA+AGG | - | chr4_1:34482498-34482517 | Msa0545020:CDS | 40.0% | |
! | AGGAACAACGTTTTCGCTAT+TGG | - | chr4_1:34482518-34482537 | Msa0545020:CDS | 40.0% |
CATGCAGTGTTGTCAAATAG+TGG | - | chr4_1:34482631-34482650 | Msa0545020:intron | 40.0% | |
GTCAAATAGTGGCATAGTAG+CGG | - | chr4_1:34482642-34482661 | Msa0545020:intron | 40.0% | |
GATACGCTATTTAGCACAGA+TGG | - | chr4_1:34482692-34482711 | Msa0545020:intron | 40.0% | |
CTATTGTCAATCCCAGATAG+CGG | - | chr4_1:34482808-34482827 | Msa0545020:intron | 40.0% | |
! | AAACAAGGAGTGTATGCACA+AGG | - | chr4_1:34482918-34482937 | Msa0545020:intron | 40.0% |
GGAGCGAAAGAACGTAAATT+AGG | - | chr4_1:34482987-34483006 | Msa0545020:CDS | 40.0% | |
GTTTCACTTGGAAGGAAACA+TGG | - | chr4_1:34483041-34483060 | Msa0545020:CDS | 40.0% | |
ACAATTGTTGGAAGACTTCC+TGG | - | chr4_1:34483086-34483105 | Msa0545020:CDS | 40.0% | |
GGGAAAACAAGAAAGGGATT+AGG | - | chr4_1:34483137-34483156 | Msa0545020:CDS | 40.0% | |
! | TCTGAAGTCTTCACTGCTGA+TGG | - | chr4_1:34481634-34481653 | Msa0545020:CDS | 45.0% |
! | ATGCTGACTGCGTCAATGAA+TGG | + | chr4_1:34481824-34481843 | None:intergenic | 45.0% |
!! | TCAGCATGTTGGTGGTTGTT+TGG | - | chr4_1:34481837-34481856 | Msa0545020:intron | 45.0% |
CAAGCACAATAGTGGTCGTT+GGG | + | chr4_1:34481955-34481974 | None:intergenic | 45.0% | |
! | ATGATTTGGATGGTCATGGG+AGG | - | chr4_1:34482462-34482481 | Msa0545020:CDS | 45.0% |
CTGTGCTAAATAGCGTATCG+TGG | + | chr4_1:34482691-34482710 | None:intergenic | 45.0% | |
CACAGATGGTTTCCAGATAG+TGG | - | chr4_1:34482706-34482725 | Msa0545020:intron | 45.0% | |
! | GACTGGTCAATCTCAGATAG+CGG | + | chr4_1:34482786-34482805 | None:intergenic | 45.0% |
TGGGATTGACAATAGGTGAC+TGG | + | chr4_1:34482803-34482822 | None:intergenic | 45.0% | |
! | CGCTATCTGGGATTGACAAT+AGG | + | chr4_1:34482810-34482829 | None:intergenic | 45.0% |
! | TATTGGTGGTTGTGCCTTGT+AGG | + | chr4_1:34483015-34483034 | None:intergenic | 45.0% |
CTTCCTGGTATGATCAAGTC+AGG | - | chr4_1:34483101-34483120 | Msa0545020:CDS | 45.0% | |
! | TCTCCTGACTTGATCATACC+AGG | + | chr4_1:34483107-34483126 | None:intergenic | 45.0% |
! | TCTGAAGTCTTCACTGCTGA+TGG | - | chr4_1:34481634-34481653 | Msa0545020:CDS | 45.0% |
! | ATGCTGACTGCGTCAATGAA+TGG | + | chr4_1:34481824-34481843 | None:intergenic | 45.0% |
!! | TCAGCATGTTGGTGGTTGTT+TGG | - | chr4_1:34481837-34481856 | Msa0545020:intron | 45.0% |
CAAGCACAATAGTGGTCGTT+GGG | + | chr4_1:34481955-34481974 | None:intergenic | 45.0% | |
! | ATGATTTGGATGGTCATGGG+AGG | - | chr4_1:34482462-34482481 | Msa0545020:CDS | 45.0% |
CTGTGCTAAATAGCGTATCG+TGG | + | chr4_1:34482691-34482710 | None:intergenic | 45.0% | |
CACAGATGGTTTCCAGATAG+TGG | - | chr4_1:34482706-34482725 | Msa0545020:intron | 45.0% | |
! | GACTGGTCAATCTCAGATAG+CGG | + | chr4_1:34482786-34482805 | None:intergenic | 45.0% |
TGGGATTGACAATAGGTGAC+TGG | + | chr4_1:34482803-34482822 | None:intergenic | 45.0% | |
! | CGCTATCTGGGATTGACAAT+AGG | + | chr4_1:34482810-34482829 | None:intergenic | 45.0% |
! | TATTGGTGGTTGTGCCTTGT+AGG | + | chr4_1:34483015-34483034 | None:intergenic | 45.0% |
CTTCCTGGTATGATCAAGTC+AGG | - | chr4_1:34483101-34483120 | Msa0545020:CDS | 45.0% | |
! | TCTCCTGACTTGATCATACC+AGG | + | chr4_1:34483107-34483126 | None:intergenic | 45.0% |
ACTGTCCTTTCTGCGAAGGA+TGG | + | chr4_1:34481547-34481566 | None:intergenic | 50.0% | |
GATCACTGTCCTTTCTGCGA+AGG | + | chr4_1:34481551-34481570 | None:intergenic | 50.0% | |
CATTGACGCAGTCAGCATGT+TGG | - | chr4_1:34481826-34481845 | Msa0545020:intron | 50.0% | |
GCAAGCACAATAGTGGTCGT+TGG | + | chr4_1:34481956-34481975 | None:intergenic | 50.0% | |
TCGCACAGCAAGCACAATAG+TGG | + | chr4_1:34481963-34481982 | None:intergenic | 50.0% | |
! | ATTGTTGGTGGAGGTCCAAC+TGG | - | chr4_1:34482143-34482162 | Msa0545020:intron | 50.0% |
TGAGCTAGCAGCAGAGATTG+CGG | - | chr4_1:34482169-34482188 | Msa0545020:CDS | 50.0% | |
GGAAACCACTTTCCACAGCA+TGG | - | chr4_1:34482417-34482436 | Msa0545020:CDS | 50.0% | |
AGTTTCACCTAGCCATGCTG+TGG | + | chr4_1:34482432-34482451 | None:intergenic | 50.0% | |
ACGCTGCTTAAGCCACTATC+TGG | + | chr4_1:34482721-34482740 | None:intergenic | 50.0% | |
ACTGTCCTTTCTGCGAAGGA+TGG | + | chr4_1:34481547-34481566 | None:intergenic | 50.0% | |
GATCACTGTCCTTTCTGCGA+AGG | + | chr4_1:34481551-34481570 | None:intergenic | 50.0% | |
CATTGACGCAGTCAGCATGT+TGG | - | chr4_1:34481826-34481845 | Msa0545020:intron | 50.0% | |
GCAAGCACAATAGTGGTCGT+TGG | + | chr4_1:34481956-34481975 | None:intergenic | 50.0% | |
TCGCACAGCAAGCACAATAG+TGG | + | chr4_1:34481963-34481982 | None:intergenic | 50.0% | |
! | ATTGTTGGTGGAGGTCCAAC+TGG | - | chr4_1:34482143-34482162 | Msa0545020:intron | 50.0% |
TGAGCTAGCAGCAGAGATTG+CGG | - | chr4_1:34482169-34482188 | Msa0545020:CDS | 50.0% | |
GGAAACCACTTTCCACAGCA+TGG | - | chr4_1:34482417-34482436 | Msa0545020:CDS | 50.0% | |
AGTTTCACCTAGCCATGCTG+TGG | + | chr4_1:34482432-34482451 | None:intergenic | 50.0% | |
ACGCTGCTTAAGCCACTATC+TGG | + | chr4_1:34482721-34482740 | None:intergenic | 50.0% | |
TGGAGCCATCCTTCGCAGAA+AGG | - | chr4_1:34481539-34481558 | Msa0545020:CDS | 55.0% | |
TGACGCAGTCAGCATGTTGG+TGG | - | chr4_1:34481829-34481848 | Msa0545020:intron | 55.0% | |
GCTGCTAGCTCAACACCAGT+TGG | + | chr4_1:34482161-34482180 | None:intergenic | 55.0% | |
CCTAGCCATGCTGTGGAAAG+TGG | + | chr4_1:34482425-34482444 | None:intergenic | 55.0% | |
CCACTTTCCACAGCATGGCT+AGG | - | chr4_1:34482422-34482441 | Msa0545020:CDS | 55.0% | |
TGGAGCCATCCTTCGCAGAA+AGG | - | chr4_1:34481539-34481558 | Msa0545020:CDS | 55.0% | |
TGACGCAGTCAGCATGTTGG+TGG | - | chr4_1:34481829-34481848 | Msa0545020:intron | 55.0% | |
GCTGCTAGCTCAACACCAGT+TGG | + | chr4_1:34482161-34482180 | None:intergenic | 55.0% | |
CCTAGCCATGCTGTGGAAAG+TGG | + | chr4_1:34482425-34482444 | None:intergenic | 55.0% | |
CCACTTTCCACAGCATGGCT+AGG | - | chr4_1:34482422-34482441 | Msa0545020:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 34481535 | 34483187 | 34481535 | ID=Msa0545020;Name=Msa0545020 |
chr4_1 | mRNA | 34481535 | 34483187 | 34481535 | ID=Msa0545020-mRNA-1;Parent=Msa0545020;Name=Msa0545020-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|314 |
chr4_1 | exon | 34482971 | 34483187 | 34482971 | ID=Msa0545020-mRNA-1:exon:8788;Parent=Msa0545020-mRNA-1 |
chr4_1 | exon | 34482163 | 34482614 | 34482163 | ID=Msa0545020-mRNA-1:exon:8787;Parent=Msa0545020-mRNA-1 |
chr4_1 | exon | 34481535 | 34481810 | 34481535 | ID=Msa0545020-mRNA-1:exon:8786;Parent=Msa0545020-mRNA-1 |
chr4_1 | CDS | 34482971 | 34483187 | 34482971 | ID=Msa0545020-mRNA-1:cds;Parent=Msa0545020-mRNA-1 |
chr4_1 | CDS | 34482163 | 34482614 | 34482163 | ID=Msa0545020-mRNA-1:cds;Parent=Msa0545020-mRNA-1 |
chr4_1 | CDS | 34481535 | 34481810 | 34481535 | ID=Msa0545020-mRNA-1:cds;Parent=Msa0545020-mRNA-1 |
Gene Sequence |
Protein sequence |