AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545020 MtrunA17_Chr4g0025621 97.452 314 8 0 1 314 47 360 0.0 628
Msa0545020 MtrunA17_Chr4g0025661 66.987 312 101 2 1 311 50 360 1.21e-154 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545020 AT3G44190.2 63.344 311 113 1 1 311 1 310 4.54e-147 416
Msa0545020 AT5G22140.2 64.309 311 110 1 1 311 1 310 6.34e-147 416
Msa0545020 AT3G44190.1 63.344 311 113 1 1 311 55 364 2.74e-146 416
Msa0545020 AT5G22140.1 64.309 311 110 1 1 311 55 364 4.77e-146 416

Find 60 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAATAGTTTCAGATTCT+TGG 0.196415 4_1:+34481742 None:intergenic
AATGTCTTTCTTGAAGCTTT+TGG 0.265463 4_1:+34482443 None:intergenic
ACTCCTTCACAAATGAAAAT+AGG 0.292255 4_1:-34482364 Msa0545020:CDS
CTTCAAGAAAGACATTAAAA+TGG 0.321115 4_1:-34482436 Msa0545020:CDS
ACAATTGTTGGAAGACTTCC+TGG 0.349182 4_1:-34481614 Msa0545020:CDS
TTCAGATTCAGTTATGTTGA+TGG 0.355713 4_1:+34483083 None:intergenic
GGAGCGAAAGAACGTAAATT+AGG 0.359944 4_1:-34481713 Msa0545020:CDS
TCAAGATTGCTAGAATATAT+TGG 0.361205 4_1:-34482467 Msa0545020:CDS
CCAAGTGAAACAATAGATAT+TGG 0.377879 4_1:+34481671 None:intergenic
TTTCCTTTCATGACAATTGT+TGG 0.378561 4_1:-34481626 Msa0545020:CDS
GGGAAAACAAGAAAGGGATT+AGG 0.385570 4_1:-34481563 Msa0545020:CDS
ATTGCTTACCTCCTTTGTAT+TGG 0.393585 4_1:+34482962 None:intergenic
GATTATCTTGTTATCGCAAC+TGG 0.394119 4_1:-34483027 Msa0545020:CDS
GGAAAACAAGAAAGGGATTA+GGG 0.398328 4_1:-34481562 Msa0545020:CDS
TATTGGTGGTTGTGCCTTGT+AGG 0.413298 4_1:+34481688 None:intergenic
CTCTCAAGTATTCATCAACT+TGG 0.419612 4_1:+34482213 None:intergenic
AGTCAGGAGATTTGTTTGTT+GGG 0.428035 4_1:-34481583 Msa0545020:CDS
TATCTATTGTTTCACTTGGA+AGG 0.431104 4_1:-34481667 Msa0545020:CDS
TTTCGCTATTGGAGACATTA+CGG 0.432085 4_1:-34482171 Msa0545020:CDS
AAGTCAGGAGATTTGTTTGT+TGG 0.437062 4_1:-34481584 Msa0545020:CDS
GTTTGTTGGGAAAACAAGAA+AGG 0.452444 4_1:-34481570 Msa0545020:CDS
ATTGTTGGTGGAGGTCCAAC+TGG 0.452939 4_1:-34482557 Msa0545020:CDS
AATCTGAAACTATTGATAGA+AGG 0.453316 4_1:-34481737 Msa0545020:CDS
TTTGTTGGGAAAACAAGAAA+GGG 0.460435 4_1:-34481569 Msa0545020:CDS
CTTCCTGGTATGATCAAGTC+AGG 0.460740 4_1:-34481599 Msa0545020:CDS
CCAATATCTATTGTTTCACT+TGG 0.467044 4_1:-34481671 Msa0545020:CDS
TGCGATAACAAGATAATCAT+AGG 0.469385 4_1:+34483032 None:intergenic
CATAGAGAATATTTCACAAA+AGG 0.477184 4_1:-34483126 Msa0545020:CDS
CATTAAAATGGCTTCAATCA+AGG 0.485208 4_1:-34482424 Msa0545020:CDS
AGGACTTATCAAACTTCGGT+TGG 0.486951 4_1:-34482344 Msa0545020:CDS
AAAGTGACTATAGTGCATAA+AGG 0.487929 4_1:-34482491 Msa0545020:CDS
CCTAGCCATGCTGTGGAAAG+TGG 0.493960 4_1:+34482278 None:intergenic
AAAGATGATTTGGATGGTCA+TGG 0.509883 4_1:-34482242 Msa0545020:CDS
GATGAATACTTGAGAGTGAA+GGG 0.516573 4_1:-34482206 Msa0545020:CDS
GATCACTGTCCTTTCTGCGA+AGG 0.531450 4_1:+34483152 None:intergenic
GTTTCACTTGGAAGGAAACA+TGG 0.536683 4_1:-34481659 Msa0545020:CDS
TCTGAAGTCTTCACTGCTGA+TGG 0.538947 4_1:-34483066 Msa0545020:CDS
CTTCCAACAATTGTCATGAA+AGG 0.545832 4_1:+34481623 None:intergenic
TGATGAATACTTGAGAGTGA+AGG 0.546458 4_1:-34482207 Msa0545020:CDS
ACTGTCCTTTCTGCGAAGGA+TGG 0.552774 4_1:+34483156 None:intergenic
AAATAGGACTTATCAAACTT+CGG 0.554684 4_1:-34482348 Msa0545020:CDS
TGGAGCCATCCTTCGCAGAA+AGG 0.564663 4_1:-34483161 Msa0545020:CDS
AGTGAAACAATAGATATTGG+TGG 0.570389 4_1:+34481674 None:intergenic
TCTCCTGACTTGATCATACC+AGG 0.577444 4_1:+34481596 None:intergenic
CCACTTTCCACAGCATGGCT+AGG 0.590873 4_1:-34482278 Msa0545020:CDS
GCTGCTAGCTCAACACCAGT+TGG 0.599083 4_1:+34482542 None:intergenic
AATACTTGAGAGTGAAGGGA+AGG 0.600149 4_1:-34482202 Msa0545020:CDS
CTGAAACTATTGATAGAAGG+AGG 0.602874 4_1:-34481734 Msa0545020:CDS
GAAAGACTTGACCAATACAA+AGG 0.625608 4_1:-34482973 Msa0545020:CDS
AAGATGATTTGGATGGTCAT+GGG 0.626015 4_1:-34482241 Msa0545020:CDS
AGTTTCACCTAGCCATGCTG+TGG 0.627017 4_1:+34482271 None:intergenic
GATAATCATAGGTGATCTGA+CGG 0.632076 4_1:+34483043 None:intergenic
GGAAACCACTTTCCACAGCA+TGG 0.632481 4_1:-34482283 Msa0545020:CDS
ACGTAAATTAGGTACCTACA+AGG 0.632721 4_1:-34481702 Msa0545020:CDS
TGAGCTAGCAGCAGAGATTG+CGG 0.644801 4_1:-34482531 Msa0545020:CDS
TGATGGCACTTGATATAACA+AGG 0.655923 4_1:+34483100 None:intergenic
AGACTTGACCAATACAAAGG+AGG 0.681103 4_1:-34482970 Msa0545020:intron
ATGATTTGGATGGTCATGGG+AGG 0.683773 4_1:-34482238 Msa0545020:CDS
AAACAAGGAGTGTATGCACA+AGG 0.686146 4_1:-34481782 Msa0545020:CDS
ATGTTACAGGAAATCAAACA+AGG 0.698106 4_1:-34481797 Msa0545020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAATATATGTTAC+AGG - chr4_1:34482890-34482909 Msa0545020:intron 15.0%
!! AAAATTGAAATATATGTTAC+AGG - chr4_1:34482890-34482909 Msa0545020:intron 15.0%
!!! ATACACATTTTCTATGTATA+GGG - chr4_1:34482396-34482415 Msa0545020:CDS 20.0%
!!! AACTTTTTTGAAAGATGATT+TGG - chr4_1:34482448-34482467 Msa0545020:CDS 20.0%
!!! ATACACATTTTCTATGTATA+GGG - chr4_1:34482396-34482415 Msa0545020:CDS 20.0%
!!! AACTTTTTTGAAAGATGATT+TGG - chr4_1:34482448-34482467 Msa0545020:CDS 20.0%
!! CTTTTGTGAAATATTCTCTA+TGG + chr4_1:34481576-34481595 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - chr4_1:34481574-34481593 Msa0545020:CDS 25.0%
! GGAATTGTTAATTAATTGCA+TGG + chr4_1:34481803-34481822 None:intergenic 25.0%
!!! ACTATAGTCACTTTTTTATC+AGG + chr4_1:34482203-34482222 None:intergenic 25.0%
! TCAAGATTGCTAGAATATAT+TGG - chr4_1:34482233-34482252 Msa0545020:CDS 25.0%
! CTTCAAGAAAGACATTAAAA+TGG - chr4_1:34482264-34482283 Msa0545020:CDS 25.0%
! AAATAGGACTTATCAAACTT+CGG - chr4_1:34482352-34482371 Msa0545020:CDS 25.0%
!! GATACACATTTTCTATGTAT+AGG - chr4_1:34482395-34482414 Msa0545020:CDS 25.0%
!!! TTTTTGAAAGATGATTTGGA+TGG - chr4_1:34482452-34482471 Msa0545020:CDS 25.0%
! TTAACATATGCGTATTATTG+CGG + chr4_1:34482851-34482870 None:intergenic 25.0%
! TATCAATAGTTTCAGATTCT+TGG + chr4_1:34482961-34482980 None:intergenic 25.0%
!! AATCTGAAACTATTGATAGA+AGG - chr4_1:34482963-34482982 Msa0545020:intron 25.0%
!! CTTTTGTGAAATATTCTCTA+TGG + chr4_1:34481576-34481595 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - chr4_1:34481574-34481593 Msa0545020:CDS 25.0%
! GGAATTGTTAATTAATTGCA+TGG + chr4_1:34481803-34481822 None:intergenic 25.0%
!!! ACTATAGTCACTTTTTTATC+AGG + chr4_1:34482203-34482222 None:intergenic 25.0%
! TCAAGATTGCTAGAATATAT+TGG - chr4_1:34482233-34482252 Msa0545020:CDS 25.0%
! CTTCAAGAAAGACATTAAAA+TGG - chr4_1:34482264-34482283 Msa0545020:CDS 25.0%
! AAATAGGACTTATCAAACTT+CGG - chr4_1:34482352-34482371 Msa0545020:CDS 25.0%
!! GATACACATTTTCTATGTAT+AGG - chr4_1:34482395-34482414 Msa0545020:CDS 25.0%
!!! TTTTTGAAAGATGATTTGGA+TGG - chr4_1:34482452-34482471 Msa0545020:CDS 25.0%
! TTAACATATGCGTATTATTG+CGG + chr4_1:34482851-34482870 None:intergenic 25.0%
! TATCAATAGTTTCAGATTCT+TGG + chr4_1:34482961-34482980 None:intergenic 25.0%
!! AATCTGAAACTATTGATAGA+AGG - chr4_1:34482963-34482982 Msa0545020:intron 25.0%
TTCAGATTCAGTTATGTTGA+TGG + chr4_1:34481620-34481639 None:intergenic 30.0%
TGCGATAACAAGATAATCAT+AGG + chr4_1:34481671-34481690 None:intergenic 30.0%
TCGATTTCATATGAGTGATA+AGG - chr4_1:34482064-34482083 Msa0545020:intron 30.0%
AAAGTGACTATAGTGCATAA+AGG - chr4_1:34482209-34482228 Msa0545020:CDS 30.0%
! AATGTCTTTCTTGAAGCTTT+TGG + chr4_1:34482260-34482279 None:intergenic 30.0%
CATTAAAATGGCTTCAATCA+AGG - chr4_1:34482276-34482295 Msa0545020:CDS 30.0%
ACTCCTTCACAAATGAAAAT+AGG - chr4_1:34482336-34482355 Msa0545020:CDS 30.0%
! AGTCCTATTTTCATTTGTGA+AGG + chr4_1:34482342-34482361 None:intergenic 30.0%
TAAAAGACGACGAATTGAAT+TGG + chr4_1:34482580-34482599 None:intergenic 30.0%
GCAATAATACGCATATGTTA+AGG - chr4_1:34482850-34482869 Msa0545020:intron 30.0%
ATGTTACAGGAAATCAAACA+AGG - chr4_1:34482903-34482922 Msa0545020:intron 30.0%
AGTGAAACAATAGATATTGG+TGG + chr4_1:34483029-34483048 None:intergenic 30.0%
CCAAGTGAAACAATAGATAT+TGG + chr4_1:34483032-34483051 None:intergenic 30.0%
CCAATATCTATTGTTTCACT+TGG - chr4_1:34483029-34483048 Msa0545020:CDS 30.0%
TATCTATTGTTTCACTTGGA+AGG - chr4_1:34483033-34483052 Msa0545020:CDS 30.0%
TTTCCTTTCATGACAATTGT+TGG - chr4_1:34483074-34483093 Msa0545020:CDS 30.0%
TTTGTTGGGAAAACAAGAAA+GGG - chr4_1:34483131-34483150 Msa0545020:CDS 30.0%
TTCAGATTCAGTTATGTTGA+TGG + chr4_1:34481620-34481639 None:intergenic 30.0%
TGCGATAACAAGATAATCAT+AGG + chr4_1:34481671-34481690 None:intergenic 30.0%
TCGATTTCATATGAGTGATA+AGG - chr4_1:34482064-34482083 Msa0545020:intron 30.0%
AAAGTGACTATAGTGCATAA+AGG - chr4_1:34482209-34482228 Msa0545020:CDS 30.0%
! AATGTCTTTCTTGAAGCTTT+TGG + chr4_1:34482260-34482279 None:intergenic 30.0%
CATTAAAATGGCTTCAATCA+AGG - chr4_1:34482276-34482295 Msa0545020:CDS 30.0%
ACTCCTTCACAAATGAAAAT+AGG - chr4_1:34482336-34482355 Msa0545020:CDS 30.0%
! AGTCCTATTTTCATTTGTGA+AGG + chr4_1:34482342-34482361 None:intergenic 30.0%
TAAAAGACGACGAATTGAAT+TGG + chr4_1:34482580-34482599 None:intergenic 30.0%
GCAATAATACGCATATGTTA+AGG - chr4_1:34482850-34482869 Msa0545020:intron 30.0%
ATGTTACAGGAAATCAAACA+AGG - chr4_1:34482903-34482922 Msa0545020:intron 30.0%
AGTGAAACAATAGATATTGG+TGG + chr4_1:34483029-34483048 None:intergenic 30.0%
CCAAGTGAAACAATAGATAT+TGG + chr4_1:34483032-34483051 None:intergenic 30.0%
CCAATATCTATTGTTTCACT+TGG - chr4_1:34483029-34483048 Msa0545020:CDS 30.0%
TATCTATTGTTTCACTTGGA+AGG - chr4_1:34483033-34483052 Msa0545020:CDS 30.0%
TTTCCTTTCATGACAATTGT+TGG - chr4_1:34483074-34483093 Msa0545020:CDS 30.0%
TTTGTTGGGAAAACAAGAAA+GGG - chr4_1:34483131-34483150 Msa0545020:CDS 30.0%
TGATGGCACTTGATATAACA+AGG + chr4_1:34481603-34481622 None:intergenic 35.0%
GATAATCATAGGTGATCTGA+CGG + chr4_1:34481660-34481679 None:intergenic 35.0%
! GATTATCTTGTTATCGCAAC+TGG - chr4_1:34481673-34481692 Msa0545020:CDS 35.0%
CAGAATCTATCCCAAAAACA+AGG - chr4_1:34481701-34481720 Msa0545020:CDS 35.0%
!!! GTCTTTCAGTCCTTGTTTTT+GGG + chr4_1:34481714-34481733 None:intergenic 35.0%
!!! AGTCTTTCAGTCCTTGTTTT+TGG + chr4_1:34481715-34481734 None:intergenic 35.0%
GAAAGACTTGACCAATACAA+AGG - chr4_1:34481727-34481746 Msa0545020:CDS 35.0%
ATTGCTTACCTCCTTTGTAT+TGG + chr4_1:34481741-34481760 None:intergenic 35.0%
! ACTGTCACTTGACACAAATA+GGG + chr4_1:34482033-34482052 None:intergenic 35.0%
! AACTGTCACTTGACACAAAT+AGG + chr4_1:34482034-34482053 None:intergenic 35.0%
! AAAGATGATTTGGATGGTCA+TGG - chr4_1:34482458-34482477 Msa0545020:CDS 35.0%
! AAGATGATTTGGATGGTCAT+GGG - chr4_1:34482459-34482478 Msa0545020:CDS 35.0%
CTCTCAAGTATTCATCAACT+TGG + chr4_1:34482490-34482509 None:intergenic 35.0%
TGATGAATACTTGAGAGTGA+AGG - chr4_1:34482493-34482512 Msa0545020:CDS 35.0%
GATGAATACTTGAGAGTGAA+GGG - chr4_1:34482494-34482513 Msa0545020:CDS 35.0%
TTTCGCTATTGGAGACATTA+CGG - chr4_1:34482529-34482548 Msa0545020:CDS 35.0%
!! ACGACGAATTGAATTGGTTT+TGG + chr4_1:34482574-34482593 None:intergenic 35.0%
! CGTCGTCTTTTATTATCTCT+AGG - chr4_1:34482588-34482607 Msa0545020:CDS 35.0%
!!! ACTGTTATTTTCCGCTATCT+GGG + chr4_1:34482822-34482841 None:intergenic 35.0%
!!! AACTGTTATTTTCCGCTATC+TGG + chr4_1:34482823-34482842 None:intergenic 35.0%
CTGAAACTATTGATAGAAGG+AGG - chr4_1:34482966-34482985 Msa0545020:intron 35.0%
ACGTAAATTAGGTACCTACA+AGG - chr4_1:34482998-34483017 Msa0545020:CDS 35.0%
CTTCCAACAATTGTCATGAA+AGG + chr4_1:34483080-34483099 None:intergenic 35.0%
! AAGTCAGGAGATTTGTTTGT+TGG - chr4_1:34483116-34483135 Msa0545020:CDS 35.0%
! AGTCAGGAGATTTGTTTGTT+GGG - chr4_1:34483117-34483136 Msa0545020:CDS 35.0%
! GTTTGTTGGGAAAACAAGAA+AGG - chr4_1:34483130-34483149 Msa0545020:CDS 35.0%
GGAAAACAAGAAAGGGATTA+GGG - chr4_1:34483138-34483157 Msa0545020:CDS 35.0%
TGATGGCACTTGATATAACA+AGG + chr4_1:34481603-34481622 None:intergenic 35.0%
GATAATCATAGGTGATCTGA+CGG + chr4_1:34481660-34481679 None:intergenic 35.0%
! GATTATCTTGTTATCGCAAC+TGG - chr4_1:34481673-34481692 Msa0545020:CDS 35.0%
CAGAATCTATCCCAAAAACA+AGG - chr4_1:34481701-34481720 Msa0545020:CDS 35.0%
!!! GTCTTTCAGTCCTTGTTTTT+GGG + chr4_1:34481714-34481733 None:intergenic 35.0%
!!! AGTCTTTCAGTCCTTGTTTT+TGG + chr4_1:34481715-34481734 None:intergenic 35.0%
GAAAGACTTGACCAATACAA+AGG - chr4_1:34481727-34481746 Msa0545020:CDS 35.0%
ATTGCTTACCTCCTTTGTAT+TGG + chr4_1:34481741-34481760 None:intergenic 35.0%
! ACTGTCACTTGACACAAATA+GGG + chr4_1:34482033-34482052 None:intergenic 35.0%
! AACTGTCACTTGACACAAAT+AGG + chr4_1:34482034-34482053 None:intergenic 35.0%
! AAAGATGATTTGGATGGTCA+TGG - chr4_1:34482458-34482477 Msa0545020:CDS 35.0%
! AAGATGATTTGGATGGTCAT+GGG - chr4_1:34482459-34482478 Msa0545020:CDS 35.0%
CTCTCAAGTATTCATCAACT+TGG + chr4_1:34482490-34482509 None:intergenic 35.0%
TGATGAATACTTGAGAGTGA+AGG - chr4_1:34482493-34482512 Msa0545020:CDS 35.0%
GATGAATACTTGAGAGTGAA+GGG - chr4_1:34482494-34482513 Msa0545020:CDS 35.0%
TTTCGCTATTGGAGACATTA+CGG - chr4_1:34482529-34482548 Msa0545020:CDS 35.0%
!! ACGACGAATTGAATTGGTTT+TGG + chr4_1:34482574-34482593 None:intergenic 35.0%
! CGTCGTCTTTTATTATCTCT+AGG - chr4_1:34482588-34482607 Msa0545020:CDS 35.0%
!!! ACTGTTATTTTCCGCTATCT+GGG + chr4_1:34482822-34482841 None:intergenic 35.0%
!!! AACTGTTATTTTCCGCTATC+TGG + chr4_1:34482823-34482842 None:intergenic 35.0%
CTGAAACTATTGATAGAAGG+AGG - chr4_1:34482966-34482985 Msa0545020:intron 35.0%
ACGTAAATTAGGTACCTACA+AGG - chr4_1:34482998-34483017 Msa0545020:CDS 35.0%
CTTCCAACAATTGTCATGAA+AGG + chr4_1:34483080-34483099 None:intergenic 35.0%
! AAGTCAGGAGATTTGTTTGT+TGG - chr4_1:34483116-34483135 Msa0545020:CDS 35.0%
! AGTCAGGAGATTTGTTTGTT+GGG - chr4_1:34483117-34483136 Msa0545020:CDS 35.0%
! GTTTGTTGGGAAAACAAGAA+AGG - chr4_1:34483130-34483149 Msa0545020:CDS 35.0%
GGAAAACAAGAAAGGGATTA+GGG - chr4_1:34483138-34483157 Msa0545020:CDS 35.0%
AGACTTGACCAATACAAAGG+AGG - chr4_1:34481730-34481749 Msa0545020:CDS 40.0%
CTGCATCAATTGCTAGAACT+TGG - chr4_1:34481774-34481793 Msa0545020:CDS 40.0%
GTTGTTTGGTTGCGATTGAA+CGG - chr4_1:34481851-34481870 Msa0545020:intron 40.0%
!!! GCACGTTCAGTTTTGATTGT+TGG - chr4_1:34482128-34482147 Msa0545020:intron 40.0%
!!! CGTTCAGTTTTGATTGTTGG+TGG - chr4_1:34482131-34482150 Msa0545020:intron 40.0%
!!! TCAGTTTTGATTGTTGGTGG+AGG - chr4_1:34482134-34482153 Msa0545020:intron 40.0%
AGGACTTATCAAACTTCGGT+TGG - chr4_1:34482356-34482375 Msa0545020:CDS 40.0%
AATACTTGAGAGTGAAGGGA+AGG - chr4_1:34482498-34482517 Msa0545020:CDS 40.0%
! AGGAACAACGTTTTCGCTAT+TGG - chr4_1:34482518-34482537 Msa0545020:CDS 40.0%
CATGCAGTGTTGTCAAATAG+TGG - chr4_1:34482631-34482650 Msa0545020:intron 40.0%
GTCAAATAGTGGCATAGTAG+CGG - chr4_1:34482642-34482661 Msa0545020:intron 40.0%
GATACGCTATTTAGCACAGA+TGG - chr4_1:34482692-34482711 Msa0545020:intron 40.0%
CTATTGTCAATCCCAGATAG+CGG - chr4_1:34482808-34482827 Msa0545020:intron 40.0%
! AAACAAGGAGTGTATGCACA+AGG - chr4_1:34482918-34482937 Msa0545020:intron 40.0%
GGAGCGAAAGAACGTAAATT+AGG - chr4_1:34482987-34483006 Msa0545020:CDS 40.0%
GTTTCACTTGGAAGGAAACA+TGG - chr4_1:34483041-34483060 Msa0545020:CDS 40.0%
ACAATTGTTGGAAGACTTCC+TGG - chr4_1:34483086-34483105 Msa0545020:CDS 40.0%
GGGAAAACAAGAAAGGGATT+AGG - chr4_1:34483137-34483156 Msa0545020:CDS 40.0%
AGACTTGACCAATACAAAGG+AGG - chr4_1:34481730-34481749 Msa0545020:CDS 40.0%
CTGCATCAATTGCTAGAACT+TGG - chr4_1:34481774-34481793 Msa0545020:CDS 40.0%
GTTGTTTGGTTGCGATTGAA+CGG - chr4_1:34481851-34481870 Msa0545020:intron 40.0%
!!! GCACGTTCAGTTTTGATTGT+TGG - chr4_1:34482128-34482147 Msa0545020:intron 40.0%
!!! CGTTCAGTTTTGATTGTTGG+TGG - chr4_1:34482131-34482150 Msa0545020:intron 40.0%
!!! TCAGTTTTGATTGTTGGTGG+AGG - chr4_1:34482134-34482153 Msa0545020:intron 40.0%
AGGACTTATCAAACTTCGGT+TGG - chr4_1:34482356-34482375 Msa0545020:CDS 40.0%
AATACTTGAGAGTGAAGGGA+AGG - chr4_1:34482498-34482517 Msa0545020:CDS 40.0%
! AGGAACAACGTTTTCGCTAT+TGG - chr4_1:34482518-34482537 Msa0545020:CDS 40.0%
CATGCAGTGTTGTCAAATAG+TGG - chr4_1:34482631-34482650 Msa0545020:intron 40.0%
GTCAAATAGTGGCATAGTAG+CGG - chr4_1:34482642-34482661 Msa0545020:intron 40.0%
GATACGCTATTTAGCACAGA+TGG - chr4_1:34482692-34482711 Msa0545020:intron 40.0%
CTATTGTCAATCCCAGATAG+CGG - chr4_1:34482808-34482827 Msa0545020:intron 40.0%
! AAACAAGGAGTGTATGCACA+AGG - chr4_1:34482918-34482937 Msa0545020:intron 40.0%
GGAGCGAAAGAACGTAAATT+AGG - chr4_1:34482987-34483006 Msa0545020:CDS 40.0%
GTTTCACTTGGAAGGAAACA+TGG - chr4_1:34483041-34483060 Msa0545020:CDS 40.0%
ACAATTGTTGGAAGACTTCC+TGG - chr4_1:34483086-34483105 Msa0545020:CDS 40.0%
GGGAAAACAAGAAAGGGATT+AGG - chr4_1:34483137-34483156 Msa0545020:CDS 40.0%
! TCTGAAGTCTTCACTGCTGA+TGG - chr4_1:34481634-34481653 Msa0545020:CDS 45.0%
! ATGCTGACTGCGTCAATGAA+TGG + chr4_1:34481824-34481843 None:intergenic 45.0%
!! TCAGCATGTTGGTGGTTGTT+TGG - chr4_1:34481837-34481856 Msa0545020:intron 45.0%
CAAGCACAATAGTGGTCGTT+GGG + chr4_1:34481955-34481974 None:intergenic 45.0%
! ATGATTTGGATGGTCATGGG+AGG - chr4_1:34482462-34482481 Msa0545020:CDS 45.0%
CTGTGCTAAATAGCGTATCG+TGG + chr4_1:34482691-34482710 None:intergenic 45.0%
CACAGATGGTTTCCAGATAG+TGG - chr4_1:34482706-34482725 Msa0545020:intron 45.0%
! GACTGGTCAATCTCAGATAG+CGG + chr4_1:34482786-34482805 None:intergenic 45.0%
TGGGATTGACAATAGGTGAC+TGG + chr4_1:34482803-34482822 None:intergenic 45.0%
! CGCTATCTGGGATTGACAAT+AGG + chr4_1:34482810-34482829 None:intergenic 45.0%
! TATTGGTGGTTGTGCCTTGT+AGG + chr4_1:34483015-34483034 None:intergenic 45.0%
CTTCCTGGTATGATCAAGTC+AGG - chr4_1:34483101-34483120 Msa0545020:CDS 45.0%
! TCTCCTGACTTGATCATACC+AGG + chr4_1:34483107-34483126 None:intergenic 45.0%
! TCTGAAGTCTTCACTGCTGA+TGG - chr4_1:34481634-34481653 Msa0545020:CDS 45.0%
! ATGCTGACTGCGTCAATGAA+TGG + chr4_1:34481824-34481843 None:intergenic 45.0%
!! TCAGCATGTTGGTGGTTGTT+TGG - chr4_1:34481837-34481856 Msa0545020:intron 45.0%
CAAGCACAATAGTGGTCGTT+GGG + chr4_1:34481955-34481974 None:intergenic 45.0%
! ATGATTTGGATGGTCATGGG+AGG - chr4_1:34482462-34482481 Msa0545020:CDS 45.0%
CTGTGCTAAATAGCGTATCG+TGG + chr4_1:34482691-34482710 None:intergenic 45.0%
CACAGATGGTTTCCAGATAG+TGG - chr4_1:34482706-34482725 Msa0545020:intron 45.0%
! GACTGGTCAATCTCAGATAG+CGG + chr4_1:34482786-34482805 None:intergenic 45.0%
TGGGATTGACAATAGGTGAC+TGG + chr4_1:34482803-34482822 None:intergenic 45.0%
! CGCTATCTGGGATTGACAAT+AGG + chr4_1:34482810-34482829 None:intergenic 45.0%
! TATTGGTGGTTGTGCCTTGT+AGG + chr4_1:34483015-34483034 None:intergenic 45.0%
CTTCCTGGTATGATCAAGTC+AGG - chr4_1:34483101-34483120 Msa0545020:CDS 45.0%
! TCTCCTGACTTGATCATACC+AGG + chr4_1:34483107-34483126 None:intergenic 45.0%
ACTGTCCTTTCTGCGAAGGA+TGG + chr4_1:34481547-34481566 None:intergenic 50.0%
GATCACTGTCCTTTCTGCGA+AGG + chr4_1:34481551-34481570 None:intergenic 50.0%
CATTGACGCAGTCAGCATGT+TGG - chr4_1:34481826-34481845 Msa0545020:intron 50.0%
GCAAGCACAATAGTGGTCGT+TGG + chr4_1:34481956-34481975 None:intergenic 50.0%
TCGCACAGCAAGCACAATAG+TGG + chr4_1:34481963-34481982 None:intergenic 50.0%
! ATTGTTGGTGGAGGTCCAAC+TGG - chr4_1:34482143-34482162 Msa0545020:intron 50.0%
TGAGCTAGCAGCAGAGATTG+CGG - chr4_1:34482169-34482188 Msa0545020:CDS 50.0%
GGAAACCACTTTCCACAGCA+TGG - chr4_1:34482417-34482436 Msa0545020:CDS 50.0%
AGTTTCACCTAGCCATGCTG+TGG + chr4_1:34482432-34482451 None:intergenic 50.0%
ACGCTGCTTAAGCCACTATC+TGG + chr4_1:34482721-34482740 None:intergenic 50.0%
ACTGTCCTTTCTGCGAAGGA+TGG + chr4_1:34481547-34481566 None:intergenic 50.0%
GATCACTGTCCTTTCTGCGA+AGG + chr4_1:34481551-34481570 None:intergenic 50.0%
CATTGACGCAGTCAGCATGT+TGG - chr4_1:34481826-34481845 Msa0545020:intron 50.0%
GCAAGCACAATAGTGGTCGT+TGG + chr4_1:34481956-34481975 None:intergenic 50.0%
TCGCACAGCAAGCACAATAG+TGG + chr4_1:34481963-34481982 None:intergenic 50.0%
! ATTGTTGGTGGAGGTCCAAC+TGG - chr4_1:34482143-34482162 Msa0545020:intron 50.0%
TGAGCTAGCAGCAGAGATTG+CGG - chr4_1:34482169-34482188 Msa0545020:CDS 50.0%
GGAAACCACTTTCCACAGCA+TGG - chr4_1:34482417-34482436 Msa0545020:CDS 50.0%
AGTTTCACCTAGCCATGCTG+TGG + chr4_1:34482432-34482451 None:intergenic 50.0%
ACGCTGCTTAAGCCACTATC+TGG + chr4_1:34482721-34482740 None:intergenic 50.0%
TGGAGCCATCCTTCGCAGAA+AGG - chr4_1:34481539-34481558 Msa0545020:CDS 55.0%
TGACGCAGTCAGCATGTTGG+TGG - chr4_1:34481829-34481848 Msa0545020:intron 55.0%
GCTGCTAGCTCAACACCAGT+TGG + chr4_1:34482161-34482180 None:intergenic 55.0%
CCTAGCCATGCTGTGGAAAG+TGG + chr4_1:34482425-34482444 None:intergenic 55.0%
CCACTTTCCACAGCATGGCT+AGG - chr4_1:34482422-34482441 Msa0545020:CDS 55.0%
TGGAGCCATCCTTCGCAGAA+AGG - chr4_1:34481539-34481558 Msa0545020:CDS 55.0%
TGACGCAGTCAGCATGTTGG+TGG - chr4_1:34481829-34481848 Msa0545020:intron 55.0%
GCTGCTAGCTCAACACCAGT+TGG + chr4_1:34482161-34482180 None:intergenic 55.0%
CCTAGCCATGCTGTGGAAAG+TGG + chr4_1:34482425-34482444 None:intergenic 55.0%
CCACTTTCCACAGCATGGCT+AGG - chr4_1:34482422-34482441 Msa0545020:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 34481535 34483187 34481535 ID=Msa0545020;Name=Msa0545020
chr4_1 mRNA 34481535 34483187 34481535 ID=Msa0545020-mRNA-1;Parent=Msa0545020;Name=Msa0545020-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|314
chr4_1 exon 34482971 34483187 34482971 ID=Msa0545020-mRNA-1:exon:8788;Parent=Msa0545020-mRNA-1
chr4_1 exon 34482163 34482614 34482163 ID=Msa0545020-mRNA-1:exon:8787;Parent=Msa0545020-mRNA-1
chr4_1 exon 34481535 34481810 34481535 ID=Msa0545020-mRNA-1:exon:8786;Parent=Msa0545020-mRNA-1
chr4_1 CDS 34482971 34483187 34482971 ID=Msa0545020-mRNA-1:cds;Parent=Msa0545020-mRNA-1
chr4_1 CDS 34482163 34482614 34482163 ID=Msa0545020-mRNA-1:cds;Parent=Msa0545020-mRNA-1
chr4_1 CDS 34481535 34481810 34481535 ID=Msa0545020-mRNA-1:cds;Parent=Msa0545020-mRNA-1
Gene Sequence

>Msa0545020

ATGGTGGAGCCATCCTTCGCAGAAAGGACAGTGATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTCAGATCACCTATGATTATCTTGTTATCGCAACTGGTCACACAGAATCTATCCCAAAAACAAGGACTGAAAGACTTGACCAATACAAAGGAGAAAATACGAAGATAAAATCTGCACGTTCAGTTTTGATTGTTGGTGGAGGTCCAACTGGTGTTGAGCTAGCAGCAGAGATTGCGGTTGATTTTCCTGATAAAAAAGTGACTATAGTGCATAAAGGATCAAGATTGCTAGAATATATTGGACCAAAAGCTTCAAGAAAGACATTAAAATGGCTTCAATCAAGGAAAGTTGATGTGAAATTTGAACAATCAGTTGACTTAGACTCCTTCACAAATGAAAATAGGACTTATCAAACTTCGGTTGGAGAGAGTGTAGAAGCAGATACACATTTTCTATGTATAGGGAAACCACTTTCCACAGCATGGCTAGGTGAAACTTTTTTGAAAGATGATTTGGATGGTCATGGGAGGATCCAAGTTGATGAATACTTGAGAGTGAAGGGAAGGAACAACGTTTTCGCTATTGGAGACATTACGGATATTCAAGAAATCAAACAAGGAGTGTATGCACAAGGTCATGCTCAATTAGTTGCCAAGAATCTGAAACTATTGATAGAAGGAGGAGCGAAAGAACGTAAATTAGGTACCTACAAGGCACAACCACCAATATCTATTGTTTCACTTGGAAGGAAACATGGTGTTGCACAATTTCCTTTCATGACAATTGTTGGAAGACTTCCTGGTATGATCAAGTCAGGAGATTTGTTTGTTGGGAAAACAAGAAAGGGATTAGGGCTTGAACCTAATGTTAAAAAATCTTAA

Protein sequence

>Msa0545020

MVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGRQITYDYLVIATGHTESIPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGPKASRKTLKWLQSRKVDVKFEQSVDLDSFTNENRTYQTSVGESVEADTHFLCIGKPLSTAWLGETFLKDDLDGHGRIQVDEYLRVKGRNNVFAIGDITDIQEIKQGVYAQGHAQLVAKNLKLLIEGGAKERKLGTYKAQPPISIVSLGRKHGVAQFPFMTIVGRLPGMIKSGDLFVGKTRKGLGLEPNVKKS*