AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574450 MtrunA17_Chr8g0390971 97.087 412 12 0 1 412 5 416 0.0 836
Msa0574450 MtrunA17_Chr1g0209861 42.000 450 188 17 7 408 9 433 1.35e-83 262
Msa0574450 MtrunA17_Chr5g0431351 40.288 139 55 4 270 396 94 216 4.44e-18 82.4
Msa0574450 MtrunA17_Chr4g0071811 47.170 106 40 3 293 396 293 384 6.28e-17 82.0
Msa0574450 MtrunA17_Chr7g0226451 38.235 170 55 8 272 396 187 351 2.02e-16 80.1
Msa0574450 MtrunA17_Chr4g0072871 53.623 69 30 1 329 397 275 341 1.10e-12 68.9
Msa0574450 MtrunA17_Chr3g0136701 70.455 44 13 0 354 397 232 275 1.20e-11 65.1
Msa0574450 MtrunA17_Chr7g0220721 70.455 44 13 0 354 397 327 370 1.51e-11 65.5
Msa0574450 MtrunA17_Chr1g0150471 68.182 44 14 0 354 397 255 298 1.96e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574450 AT1G25440.1 42.558 430 175 16 7 396 6 403 8.94e-84 262
Msa0574450 AT1G68520.1 41.745 424 187 14 7 398 6 401 1.23e-82 259
Msa0574450 AT1G73870.1 39.225 413 180 16 15 398 19 389 1.42e-67 220
Msa0574450 AT1G49130.1 44.755 143 58 5 12 147 22 150 2.79e-27 111
Msa0574450 AT1G49130.1 48.598 107 34 4 291 397 236 321 5.54e-18 84.7
Msa0574450 AT1G49130.2 44.755 143 58 5 12 147 15 143 3.02e-27 110
Msa0574450 AT1G49130.2 48.598 107 34 4 291 397 229 314 5.11e-18 84.7
Msa0574450 AT5G57180.2 43.704 135 55 3 265 396 309 425 2.29e-21 95.9
Msa0574450 AT1G07050.1 38.286 175 80 5 231 396 38 193 2.14e-20 89.0
Msa0574450 AT4G25990.1 47.458 118 42 4 281 396 284 383 1.14e-19 90.5
Msa0574450 AT5G57180.1 41.860 129 54 3 265 390 309 419 9.66e-18 85.1
Msa0574450 AT5G14370.1 42.593 108 59 2 290 396 231 336 2.22e-16 80.1
Msa0574450 AT4G25990.2 42.105 133 42 5 281 396 284 398 2.39e-16 80.9
Msa0574450 AT1G07050.2 36.095 169 80 5 231 390 38 187 4.14e-16 77.0
Msa0574450 AT4G25990.3 45.536 112 41 4 281 390 284 377 4.62e-16 79.7
Msa0574450 AT2G24790.2 53.030 66 27 1 12 73 2 67 1.01e-11 64.7
Msa0574450 AT2G24790.1 53.030 66 27 1 12 73 2 67 1.84e-11 65.1
Msa0574450 AT2G24790.1 70.455 44 13 0 354 397 229 272 3.26e-11 64.3
Msa0574450 AT5G57660.1 70.455 44 13 0 354 397 285 328 1.95e-11 65.5
Msa0574450 AT5G24930.1 70.455 44 13 0 354 397 295 338 2.36e-11 65.5
Msa0574450 AT3G02380.1 57.895 57 24 0 354 410 278 334 9.38e-11 63.2

Find 94 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAACGTCCTTTCATTCT+TGG 0.215353 4_1:-77984860 None:intergenic
TGATTCATGGCAAAACTTAT+TGG 0.234314 4_1:+77984419 Msa0574450:CDS
AACTTGGATTGATTAATATT+TGG 0.252165 4_1:+77984996 Msa0574450:three_prime_UTR
GGATGAAGAACTTGATGATT+TGG 0.268535 4_1:+77984134 Msa0574450:CDS
TGATGTTATACATGGTTAAT+TGG 0.276526 4_1:+77985236 Msa0574450:three_prime_UTR
TTGTAAGGAACAATAATAAT+AGG 0.284284 4_1:-77985194 None:intergenic
TTGTCATGGTTGTGACAATT+TGG 0.309873 4_1:+77983564 Msa0574450:CDS
ATCACATGCTCTTGCTGTCT+TGG 0.344245 4_1:-77983488 None:intergenic
GGTTACCAAGTTGGTTATTC+CGG 0.355287 4_1:+77985257 Msa0574450:three_prime_UTR
ATGGAGAAGTAAGAAGCTTA+AGG 0.355490 4_1:+77984705 Msa0574450:CDS
TTTAATTAGTATAGTACTAA+TGG 0.357285 4_1:+77985123 Msa0574450:three_prime_UTR
TATGATTAAGGAGCTTAGTT+AGG 0.372953 4_1:-77985387 None:intergenic
AAATGAAATGTTAAAGGTTA+AGG 0.373350 4_1:+77984113 Msa0574450:CDS
TCTTCATCACCTCCGAGTTC+AGG 0.373850 4_1:-77983796 None:intergenic
TTCAATCTATCTCTAGCTTC+AGG 0.383752 4_1:+77985100 Msa0574450:three_prime_UTR
CAGGGTTCAAGTGGTGTAGA+TGG 0.388893 4_1:+77984686 Msa0574450:intron
TCATGTCAGTGGTAATTAGT+TGG 0.390665 4_1:-77984923 None:intergenic
CTTCCACTTGTTCCTGAACT+CGG 0.406110 4_1:+77983784 Msa0574450:CDS
TGGAGAAGTAAGAAGCTTAA+GGG 0.411931 4_1:+77984706 Msa0574450:CDS
TTGAATGTGAACTTCTTGTA+AGG 0.415816 4_1:-77985209 None:intergenic
TCAATTGTGATGATGATTCA+TGG 0.426751 4_1:+77984406 Msa0574450:CDS
TTTACTAGAGTTAATTGCTT+GGG 0.426932 4_1:+77985073 Msa0574450:three_prime_UTR
GATGCAGATGCAGGTGCCTT+GGG 0.430470 4_1:+77983463 Msa0574450:CDS
CCTTAGCAGACGCAGTTTGA+AGG 0.435655 4_1:-77983630 None:intergenic
AAAGGGCTGACATCGAAAAC+TGG 0.442133 4_1:-77983883 None:intergenic
AGAAGATAAGATATGAAGTA+AGG 0.448594 4_1:+77984816 Msa0574450:CDS
ATCAACTAGCTCATAATTGA+AGG 0.456236 4_1:-77985150 None:intergenic
GAGATTCAAGAGAATTCATC+AGG 0.476882 4_1:+77984045 Msa0574450:CDS
ACATGAAGAATATCATCAAC+TGG 0.480535 4_1:+77984940 Msa0574450:exon
TGGTTAATTGGTTACCAAGT+TGG 0.482479 4_1:+77985248 Msa0574450:three_prime_UTR
GTTGAAAGTTTACTTGGTGT+TGG 0.483990 4_1:+77984015 Msa0574450:CDS
TTAATGGGAAGTGGTGGAGA+TGG 0.488245 4_1:+77984734 Msa0574450:CDS
TCTTGCTGTCTTGGCTCCCA+AGG 0.495634 4_1:-77983479 None:intergenic
TTATAAACAAGAGAATGAAA+TGG 0.496628 4_1:+77984080 Msa0574450:CDS
ACCAAGTTGGTTATTCCGGC+AGG 0.497580 4_1:+77985261 Msa0574450:three_prime_UTR
TCATCACAATTGAACTTAGG+AGG 0.497589 4_1:-77984396 None:intergenic
CCTTTCAGTAATAGTAGTGT+TGG 0.498513 4_1:+77984249 Msa0574450:CDS
TTGAAAGTTTACTTGGTGTT+GGG 0.498767 4_1:+77984016 Msa0574450:CDS
TGATGCAGATGCAGGTGCCT+TGG 0.503435 4_1:+77983462 Msa0574450:CDS
GCTAATGTTGAAAGTTTACT+TGG 0.513191 4_1:+77984009 Msa0574450:CDS
GATTAAGGAGCTTAGTTAGG+AGG 0.515314 4_1:-77985384 None:intergenic
GGAGGGTTTGCAGTAGTCCA+TGG 0.516903 4_1:-77984378 None:intergenic
CCTTCAAACTGCGTCTGCTA+AGG 0.519261 4_1:+77983630 Msa0574450:CDS
ATGGGAAGTGGTGGAGATGG+AGG 0.526179 4_1:+77984737 Msa0574450:CDS
ATGAAGAGGTTATTACTGAA+TGG 0.526407 4_1:+77984334 Msa0574450:CDS
TACAAGTCTCTAAATCGAAA+GGG 0.527173 4_1:-77983900 None:intergenic
GATGATGCTTTCCTTTGTCA+TGG 0.527738 4_1:+77983550 Msa0574450:CDS
ATTAGCAAGTAGACACGAAA+GGG 0.528131 4_1:+77983603 Msa0574450:CDS
TCAAATGTTGATGTTATACA+TGG 0.530008 4_1:+77985228 Msa0574450:three_prime_UTR
GGAGAAGTAAGAAGCTTAAG+GGG 0.532873 4_1:+77984707 Msa0574450:CDS
TCATCATCACAATTGAACTT+AGG 0.539550 4_1:-77984399 None:intergenic
GTACAAGTCTCTAAATCGAA+AGG 0.540349 4_1:-77983901 None:intergenic
CATCACAATTGAACTTAGGA+GGG 0.544271 4_1:-77984395 None:intergenic
TGATTAATATTTGGTGCATG+TGG 0.544592 4_1:+77985005 Msa0574450:three_prime_UTR
CTTTACTAGAGTTAATTGCT+TGG 0.546275 4_1:+77985072 Msa0574450:three_prime_UTR
AGCAAATTACCAAAAGTGCA+TGG 0.548458 4_1:+77983269 None:intergenic
GAAGAGAAGCAAGAGTATCA+AGG 0.553110 4_1:+77984759 Msa0574450:CDS
TTTGAGACTAAACTATGAAG+AGG 0.554254 4_1:+77984320 Msa0574450:CDS
GAAAAGAGACCAAGAATGAA+AGG 0.557120 4_1:+77984851 Msa0574450:CDS
GGCAAGGTTCTCCTTCTCCA+TGG 0.557589 4_1:+77984361 Msa0574450:CDS
ATTACTGAATGGAGCAGGCA+AGG 0.558438 4_1:+77984345 Msa0574450:CDS
AGAACAAGGACAAGAACTAC+TGG 0.559785 4_1:+77983816 Msa0574450:CDS
AGGTTATTACTGAATGGAGC+AGG 0.563538 4_1:+77984340 Msa0574450:CDS
GAAACTAGACAATGTGATGA+AGG 0.569584 4_1:-77983331 None:intergenic
TATTGATTTCAGGGTTCAAG+TGG 0.571240 4_1:+77984677 Msa0574450:intron
ATGAAAGGTGATGCAGATGC+AGG 0.575851 4_1:+77983454 Msa0574450:CDS
ACAACAACAGCAACGTCTCA+AGG 0.580637 4_1:+77983735 Msa0574450:CDS
GCAAATTACCAAAAGTGCAT+GGG 0.580666 4_1:+77983270 None:intergenic
GCCTGCCGGAATAACCAACT+TGG 0.586485 4_1:-77985262 None:intergenic
ATAGTTCATTAGTAGCCTGC+CGG 0.594378 4_1:-77985276 None:intergenic
CAATTATGAGCTAGTTGATG+TGG 0.594949 4_1:+77985154 Msa0574450:three_prime_UTR
GGGCAATTAATGGGAAGTGG+TGG 0.598711 4_1:+77984728 Msa0574450:CDS
AGTTTGCAGAAAAGCAAACA+TGG 0.598896 4_1:-77984977 None:intergenic
GAAGGAGACACTAGTGTCAG+TGG 0.600992 4_1:-77983313 None:intergenic
AATTAGCAAGTAGACACGAA+AGG 0.601812 4_1:+77983602 Msa0574450:CDS
GATGATATTCTTCATGTCAG+TGG 0.605262 4_1:-77984934 None:intergenic
CCTCCGAGTTCAGGAACAAG+TGG 0.605265 4_1:-77983787 None:intergenic
TTTGCAGTAGTCCATGGAGA+AGG 0.610228 4_1:-77984372 None:intergenic
CCAACACTACTATTACTGAA+AGG 0.612166 4_1:-77984249 None:intergenic
TAACAACAACAGCACAAGCA+TGG 0.618954 4_1:+77983653 Msa0574450:CDS
TCTATCATTACAGACATGAA+AGG 0.623361 4_1:+77983439 Msa0574450:exon
TGATATTGATGAGGCTGATG+AGG 0.628350 4_1:+77983840 Msa0574450:CDS
AATTGTCACAACCATGACAA+AGG 0.630486 4_1:-77983561 None:intergenic
AGTGTATACACTTCAACTAG+TGG 0.636434 4_1:+77985360 Msa0574450:three_prime_UTR
TCAACTAGCTCATAATTGAA+GGG 0.636673 4_1:-77985149 None:intergenic
CCAAAAGTGCATGGGCAGAG+AGG 0.639867 4_1:+77983278 None:intergenic
CATGGCACAGTGGATTCACA+AGG 0.649315 4_1:+77983671 Msa0574450:CDS
AAGGAGACACTAGTGTCAGT+GGG 0.663141 4_1:-77983312 None:intergenic
CTCGGAGGTGATGAAGAACA+AGG 0.666390 4_1:+77983802 Msa0574450:CDS
CCACTTGTTCCTGAACTCGG+AGG 0.668175 4_1:+77983787 Msa0574450:CDS
ACTACTGGTTGATATTGATG+AGG 0.673047 4_1:+77983831 Msa0574450:CDS
GTTTAAGAAGAAGAGCACGT+TGG 0.700628 4_1:+77983515 Msa0574450:CDS
GAGAAGTAAGAAGCTTAAGG+GGG 0.726133 4_1:+77984708 Msa0574450:CDS
ACAGCACAAGCATGGCACAG+TGG 0.751381 4_1:+77983661 Msa0574450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAATGATTCAATTAA+TGG - chr4_1:77983369-77983388 None:intergenic 15.0%
!! ACTAAAAAAGACATTAAATT+AGG + chr4_1:77984487-77984506 Msa0574450:intron 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + chr4_1:77984538-77984557 Msa0574450:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + chr4_1:77984539-77984558 Msa0574450:intron 15.0%
!! TTTAATTAGTATAGTACTAA+TGG + chr4_1:77985123-77985142 Msa0574450:three_prime_UTR 15.0%
!! CAAAAAAATGATTCAATTAA+TGG - chr4_1:77983369-77983388 None:intergenic 15.0%
!! ACTAAAAAAGACATTAAATT+AGG + chr4_1:77984487-77984506 Msa0574450:intron 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + chr4_1:77984538-77984557 Msa0574450:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + chr4_1:77984539-77984558 Msa0574450:intron 15.0%
!! TTTAATTAGTATAGTACTAA+TGG + chr4_1:77985123-77985142 Msa0574450:three_prime_UTR 15.0%
!! TTATAAACAAGAGAATGAAA+TGG + chr4_1:77984080-77984099 Msa0574450:CDS 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + chr4_1:77984107-77984126 Msa0574450:CDS 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - chr4_1:77984112-77984131 None:intergenic 20.0%
!! AAATGAAATGTTAAAGGTTA+AGG + chr4_1:77984113-77984132 Msa0574450:CDS 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + chr4_1:77984668-77984687 Msa0574450:intron 20.0%
!! AACTTGGATTGATTAATATT+TGG + chr4_1:77984996-77985015 Msa0574450:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - chr4_1:77985197-77985216 None:intergenic 20.0%
!! TTATAAACAAGAGAATGAAA+TGG + chr4_1:77984080-77984099 Msa0574450:CDS 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + chr4_1:77984107-77984126 Msa0574450:CDS 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - chr4_1:77984112-77984131 None:intergenic 20.0%
!! AAATGAAATGTTAAAGGTTA+AGG + chr4_1:77984113-77984132 Msa0574450:CDS 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + chr4_1:77984668-77984687 Msa0574450:intron 20.0%
!! AACTTGGATTGATTAATATT+TGG + chr4_1:77984996-77985015 Msa0574450:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - chr4_1:77985197-77985216 None:intergenic 20.0%
!!! GTTTTGTGAATATTGATTTC+AGG + chr4_1:77984667-77984686 Msa0574450:intron 25.0%
! AGAAGATAAGATATGAAGTA+AGG + chr4_1:77984816-77984835 Msa0574450:CDS 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + chr4_1:77985073-77985092 Msa0574450:three_prime_UTR 25.0%
! TCAAATGTTGATGTTATACA+TGG + chr4_1:77985228-77985247 Msa0574450:three_prime_UTR 25.0%
! TGATGTTATACATGGTTAAT+TGG + chr4_1:77985236-77985255 Msa0574450:three_prime_UTR 25.0%
!!! GTTTTGTGAATATTGATTTC+AGG + chr4_1:77984667-77984686 Msa0574450:intron 25.0%
! AGAAGATAAGATATGAAGTA+AGG + chr4_1:77984816-77984835 Msa0574450:CDS 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + chr4_1:77985073-77985092 Msa0574450:three_prime_UTR 25.0%
! TCAAATGTTGATGTTATACA+TGG + chr4_1:77985228-77985247 Msa0574450:three_prime_UTR 25.0%
! TGATGTTATACATGGTTAAT+TGG + chr4_1:77985236-77985255 Msa0574450:three_prime_UTR 25.0%
TCTATCATTACAGACATGAA+AGG + chr4_1:77983439-77983458 Msa0574450:exon 30.0%
!! TCGACAAATTTTTGTTGTGA+CGG - chr4_1:77983711-77983730 None:intergenic 30.0%
TACAAGTCTCTAAATCGAAA+GGG - chr4_1:77983903-77983922 None:intergenic 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + chr4_1:77983930-77983949 Msa0574450:CDS 30.0%
GCTAATGTTGAAAGTTTACT+TGG + chr4_1:77984009-77984028 Msa0574450:CDS 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + chr4_1:77984016-77984035 Msa0574450:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + chr4_1:77984320-77984339 Msa0574450:CDS 30.0%
ATGAAGAGGTTATTACTGAA+TGG + chr4_1:77984334-77984353 Msa0574450:CDS 30.0%
TCATCATCACAATTGAACTT+AGG - chr4_1:77984402-77984421 None:intergenic 30.0%
! TCAATTGTGATGATGATTCA+TGG + chr4_1:77984406-77984425 Msa0574450:CDS 30.0%
TGATTCATGGCAAAACTTAT+TGG + chr4_1:77984419-77984438 Msa0574450:CDS 30.0%
ACATGAAGAATATCATCAAC+TGG + chr4_1:77984940-77984959 Msa0574450:exon 30.0%
!! TGATTAATATTTGGTGCATG+TGG + chr4_1:77985005-77985024 Msa0574450:three_prime_UTR 30.0%
CTTTACTAGAGTTAATTGCT+TGG + chr4_1:77985072-77985091 Msa0574450:three_prime_UTR 30.0%
TCAACTAGCTCATAATTGAA+GGG - chr4_1:77985152-77985171 None:intergenic 30.0%
ATCAACTAGCTCATAATTGA+AGG - chr4_1:77985153-77985172 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - chr4_1:77985212-77985231 None:intergenic 30.0%
TCTATCATTACAGACATGAA+AGG + chr4_1:77983439-77983458 Msa0574450:exon 30.0%
!! TCGACAAATTTTTGTTGTGA+CGG - chr4_1:77983711-77983730 None:intergenic 30.0%
TACAAGTCTCTAAATCGAAA+GGG - chr4_1:77983903-77983922 None:intergenic 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + chr4_1:77983930-77983949 Msa0574450:CDS 30.0%
GCTAATGTTGAAAGTTTACT+TGG + chr4_1:77984009-77984028 Msa0574450:CDS 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + chr4_1:77984016-77984035 Msa0574450:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + chr4_1:77984320-77984339 Msa0574450:CDS 30.0%
ATGAAGAGGTTATTACTGAA+TGG + chr4_1:77984334-77984353 Msa0574450:CDS 30.0%
TCATCATCACAATTGAACTT+AGG - chr4_1:77984402-77984421 None:intergenic 30.0%
! TCAATTGTGATGATGATTCA+TGG + chr4_1:77984406-77984425 Msa0574450:CDS 30.0%
TGATTCATGGCAAAACTTAT+TGG + chr4_1:77984419-77984438 Msa0574450:CDS 30.0%
ACATGAAGAATATCATCAAC+TGG + chr4_1:77984940-77984959 Msa0574450:exon 30.0%
!! TGATTAATATTTGGTGCATG+TGG + chr4_1:77985005-77985024 Msa0574450:three_prime_UTR 30.0%
CTTTACTAGAGTTAATTGCT+TGG + chr4_1:77985072-77985091 Msa0574450:three_prime_UTR 30.0%
TCAACTAGCTCATAATTGAA+GGG - chr4_1:77985152-77985171 None:intergenic 30.0%
ATCAACTAGCTCATAATTGA+AGG - chr4_1:77985153-77985172 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - chr4_1:77985212-77985231 None:intergenic 30.0%
GAAACTAGACAATGTGATGA+AGG - chr4_1:77983334-77983353 None:intergenic 35.0%
AATTGTCACAACCATGACAA+AGG - chr4_1:77983564-77983583 None:intergenic 35.0%
TTGTCATGGTTGTGACAATT+TGG + chr4_1:77983564-77983583 Msa0574450:CDS 35.0%
AATTAGCAAGTAGACACGAA+AGG + chr4_1:77983602-77983621 Msa0574450:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + chr4_1:77983603-77983622 Msa0574450:CDS 35.0%
!! GACAAATTTTTGTTGTGACG+GGG - chr4_1:77983709-77983728 None:intergenic 35.0%
!! CGACAAATTTTTGTTGTGAC+GGG - chr4_1:77983710-77983729 None:intergenic 35.0%
! ACTACTGGTTGATATTGATG+AGG + chr4_1:77983831-77983850 Msa0574450:CDS 35.0%
GTACAAGTCTCTAAATCGAA+AGG - chr4_1:77983904-77983923 None:intergenic 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + chr4_1:77983945-77983964 Msa0574450:CDS 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + chr4_1:77984015-77984034 Msa0574450:CDS 35.0%
GAGATTCAAGAGAATTCATC+AGG + chr4_1:77984045-77984064 Msa0574450:CDS 35.0%
! GGATGAAGAACTTGATGATT+TGG + chr4_1:77984134-77984153 Msa0574450:CDS 35.0%
! CAAGTGATGAGGTTTTTCAT+TGG + chr4_1:77984175-77984194 Msa0574450:CDS 35.0%
CCAACACTACTATTACTGAA+AGG - chr4_1:77984252-77984271 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + chr4_1:77984249-77984268 Msa0574450:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - chr4_1:77984398-77984417 None:intergenic 35.0%
TCATCACAATTGAACTTAGG+AGG - chr4_1:77984399-77984418 None:intergenic 35.0%
GCAGTGATAAAACAAGTAAG+TGG - chr4_1:77984602-77984621 None:intergenic 35.0%
!! TATTGATTTCAGGGTTCAAG+TGG + chr4_1:77984677-77984696 Msa0574450:intron 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + chr4_1:77984705-77984724 Msa0574450:CDS 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + chr4_1:77984706-77984725 Msa0574450:CDS 35.0%
GAAAAGAGACCAAGAATGAA+AGG + chr4_1:77984851-77984870 Msa0574450:CDS 35.0%
ACAAAACGTCCTTTCATTCT+TGG - chr4_1:77984863-77984882 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + chr4_1:77984867-77984886 Msa0574450:CDS 35.0%
TCATGTCAGTGGTAATTAGT+TGG - chr4_1:77984926-77984945 None:intergenic 35.0%
GATGATATTCTTCATGTCAG+TGG - chr4_1:77984937-77984956 None:intergenic 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - chr4_1:77984980-77984999 None:intergenic 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + chr4_1:77984980-77984999 Msa0574450:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + chr4_1:77985100-77985119 Msa0574450:three_prime_UTR 35.0%
! CAATTATGAGCTAGTTGATG+TGG + chr4_1:77985154-77985173 Msa0574450:three_prime_UTR 35.0%
TGGTTAATTGGTTACCAAGT+TGG + chr4_1:77985248-77985267 Msa0574450:three_prime_UTR 35.0%
AGTGTATACACTTCAACTAG+TGG + chr4_1:77985360-77985379 Msa0574450:three_prime_UTR 35.0%
GAAACTAGACAATGTGATGA+AGG - chr4_1:77983334-77983353 None:intergenic 35.0%
AATTGTCACAACCATGACAA+AGG - chr4_1:77983564-77983583 None:intergenic 35.0%
TTGTCATGGTTGTGACAATT+TGG + chr4_1:77983564-77983583 Msa0574450:CDS 35.0%
AATTAGCAAGTAGACACGAA+AGG + chr4_1:77983602-77983621 Msa0574450:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + chr4_1:77983603-77983622 Msa0574450:CDS 35.0%
!! GACAAATTTTTGTTGTGACG+GGG - chr4_1:77983709-77983728 None:intergenic 35.0%
!! CGACAAATTTTTGTTGTGAC+GGG - chr4_1:77983710-77983729 None:intergenic 35.0%
! ACTACTGGTTGATATTGATG+AGG + chr4_1:77983831-77983850 Msa0574450:CDS 35.0%
GTACAAGTCTCTAAATCGAA+AGG - chr4_1:77983904-77983923 None:intergenic 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + chr4_1:77983945-77983964 Msa0574450:CDS 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + chr4_1:77984015-77984034 Msa0574450:CDS 35.0%
GAGATTCAAGAGAATTCATC+AGG + chr4_1:77984045-77984064 Msa0574450:CDS 35.0%
! GGATGAAGAACTTGATGATT+TGG + chr4_1:77984134-77984153 Msa0574450:CDS 35.0%
! CAAGTGATGAGGTTTTTCAT+TGG + chr4_1:77984175-77984194 Msa0574450:CDS 35.0%
CCAACACTACTATTACTGAA+AGG - chr4_1:77984252-77984271 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + chr4_1:77984249-77984268 Msa0574450:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - chr4_1:77984398-77984417 None:intergenic 35.0%
TCATCACAATTGAACTTAGG+AGG - chr4_1:77984399-77984418 None:intergenic 35.0%
GCAGTGATAAAACAAGTAAG+TGG - chr4_1:77984602-77984621 None:intergenic 35.0%
!! TATTGATTTCAGGGTTCAAG+TGG + chr4_1:77984677-77984696 Msa0574450:intron 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + chr4_1:77984705-77984724 Msa0574450:CDS 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + chr4_1:77984706-77984725 Msa0574450:CDS 35.0%
GAAAAGAGACCAAGAATGAA+AGG + chr4_1:77984851-77984870 Msa0574450:CDS 35.0%
ACAAAACGTCCTTTCATTCT+TGG - chr4_1:77984863-77984882 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + chr4_1:77984867-77984886 Msa0574450:CDS 35.0%
TCATGTCAGTGGTAATTAGT+TGG - chr4_1:77984926-77984945 None:intergenic 35.0%
GATGATATTCTTCATGTCAG+TGG - chr4_1:77984937-77984956 None:intergenic 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - chr4_1:77984980-77984999 None:intergenic 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + chr4_1:77984980-77984999 Msa0574450:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + chr4_1:77985100-77985119 Msa0574450:three_prime_UTR 35.0%
! CAATTATGAGCTAGTTGATG+TGG + chr4_1:77985154-77985173 Msa0574450:three_prime_UTR 35.0%
TGGTTAATTGGTTACCAAGT+TGG + chr4_1:77985248-77985267 Msa0574450:three_prime_UTR 35.0%
AGTGTATACACTTCAACTAG+TGG + chr4_1:77985360-77985379 Msa0574450:three_prime_UTR 35.0%
! GTTTAAGAAGAAGAGCACGT+TGG + chr4_1:77983515-77983534 Msa0574450:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + chr4_1:77983550-77983569 Msa0574450:CDS 40.0%
TAACAACAACAGCACAAGCA+TGG + chr4_1:77983653-77983672 Msa0574450:CDS 40.0%
AGAACAAGGACAAGAACTAC+TGG + chr4_1:77983816-77983835 Msa0574450:CDS 40.0%
TGATATTGATGAGGCTGATG+AGG + chr4_1:77983840-77983859 Msa0574450:CDS 40.0%
! TTTTGACGTGACAAGTGATG+AGG + chr4_1:77984164-77984183 Msa0574450:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + chr4_1:77984340-77984359 Msa0574450:CDS 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + chr4_1:77984707-77984726 Msa0574450:CDS 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + chr4_1:77984708-77984727 Msa0574450:CDS 40.0%
AAGCTTAAGGGGGCAATTAA+TGG + chr4_1:77984718-77984737 Msa0574450:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + chr4_1:77984719-77984738 Msa0574450:CDS 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + chr4_1:77984759-77984778 Msa0574450:CDS 40.0%
!! GGTTACCAAGTTGGTTATTC+CGG + chr4_1:77985257-77985276 Msa0574450:three_prime_UTR 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - chr4_1:77985279-77985298 None:intergenic 40.0%
! GTTTAAGAAGAAGAGCACGT+TGG + chr4_1:77983515-77983534 Msa0574450:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + chr4_1:77983550-77983569 Msa0574450:CDS 40.0%
TAACAACAACAGCACAAGCA+TGG + chr4_1:77983653-77983672 Msa0574450:CDS 40.0%
AGAACAAGGACAAGAACTAC+TGG + chr4_1:77983816-77983835 Msa0574450:CDS 40.0%
TGATATTGATGAGGCTGATG+AGG + chr4_1:77983840-77983859 Msa0574450:CDS 40.0%
! TTTTGACGTGACAAGTGATG+AGG + chr4_1:77984164-77984183 Msa0574450:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + chr4_1:77984340-77984359 Msa0574450:CDS 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + chr4_1:77984707-77984726 Msa0574450:CDS 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + chr4_1:77984708-77984727 Msa0574450:CDS 40.0%
AAGCTTAAGGGGGCAATTAA+TGG + chr4_1:77984718-77984737 Msa0574450:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + chr4_1:77984719-77984738 Msa0574450:CDS 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + chr4_1:77984759-77984778 Msa0574450:CDS 40.0%
!! GGTTACCAAGTTGGTTATTC+CGG + chr4_1:77985257-77985276 Msa0574450:three_prime_UTR 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - chr4_1:77985279-77985298 None:intergenic 40.0%
AAGGAGACACTAGTGTCAGT+GGG - chr4_1:77983315-77983334 None:intergenic 45.0%
ATGAAAGGTGATGCAGATGC+AGG + chr4_1:77983454-77983473 Msa0574450:CDS 45.0%
! ATCACATGCTCTTGCTGTCT+TGG - chr4_1:77983491-77983510 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + chr4_1:77983735-77983754 Msa0574450:CDS 45.0%
CTTCCACTTGTTCCTGAACT+CGG + chr4_1:77983784-77983803 Msa0574450:CDS 45.0%
AAAGGGCTGACATCGAAAAC+TGG - chr4_1:77983886-77983905 None:intergenic 45.0%
ATTACTGAATGGAGCAGGCA+AGG + chr4_1:77984345-77984364 Msa0574450:CDS 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - chr4_1:77984375-77984394 None:intergenic 45.0%
GGTTGAATCTCAGTAGATCG+TGG + chr4_1:77984560-77984579 Msa0574450:intron 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + chr4_1:77984734-77984753 Msa0574450:CDS 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + chr4_1:77984884-77984903 Msa0574450:CDS 45.0%
AAGGAGACACTAGTGTCAGT+GGG - chr4_1:77983315-77983334 None:intergenic 45.0%
ATGAAAGGTGATGCAGATGC+AGG + chr4_1:77983454-77983473 Msa0574450:CDS 45.0%
! ATCACATGCTCTTGCTGTCT+TGG - chr4_1:77983491-77983510 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + chr4_1:77983735-77983754 Msa0574450:CDS 45.0%
CTTCCACTTGTTCCTGAACT+CGG + chr4_1:77983784-77983803 Msa0574450:CDS 45.0%
AAAGGGCTGACATCGAAAAC+TGG - chr4_1:77983886-77983905 None:intergenic 45.0%
ATTACTGAATGGAGCAGGCA+AGG + chr4_1:77984345-77984364 Msa0574450:CDS 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - chr4_1:77984375-77984394 None:intergenic 45.0%
GGTTGAATCTCAGTAGATCG+TGG + chr4_1:77984560-77984579 Msa0574450:intron 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + chr4_1:77984734-77984753 Msa0574450:CDS 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + chr4_1:77984884-77984903 Msa0574450:CDS 45.0%
GAAGGAGACACTAGTGTCAG+TGG - chr4_1:77983316-77983335 None:intergenic 50.0%
CCTTAGCAGACGCAGTTTGA+AGG - chr4_1:77983633-77983652 None:intergenic 50.0%
CCTTCAAACTGCGTCTGCTA+AGG + chr4_1:77983630-77983649 Msa0574450:CDS 50.0%
! CATGGCACAGTGGATTCACA+AGG + chr4_1:77983671-77983690 Msa0574450:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - chr4_1:77983799-77983818 None:intergenic 50.0%
CTCGGAGGTGATGAAGAACA+AGG + chr4_1:77983802-77983821 Msa0574450:CDS 50.0%
CTCAGTAGATCGTGGTAGCA+AGG + chr4_1:77984568-77984587 Msa0574450:intron 50.0%
CAGGGTTCAAGTGGTGTAGA+TGG + chr4_1:77984686-77984705 Msa0574450:intron 50.0%
AGGGGGCAATTAATGGGAAG+TGG + chr4_1:77984725-77984744 Msa0574450:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + chr4_1:77984728-77984747 Msa0574450:CDS 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + chr4_1:77984887-77984906 Msa0574450:CDS 50.0%
!! ACCAAGTTGGTTATTCCGGC+AGG + chr4_1:77985261-77985280 Msa0574450:three_prime_UTR 50.0%
GAAGGAGACACTAGTGTCAG+TGG - chr4_1:77983316-77983335 None:intergenic 50.0%
CCTTAGCAGACGCAGTTTGA+AGG - chr4_1:77983633-77983652 None:intergenic 50.0%
CCTTCAAACTGCGTCTGCTA+AGG + chr4_1:77983630-77983649 Msa0574450:CDS 50.0%
! CATGGCACAGTGGATTCACA+AGG + chr4_1:77983671-77983690 Msa0574450:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - chr4_1:77983799-77983818 None:intergenic 50.0%
CTCGGAGGTGATGAAGAACA+AGG + chr4_1:77983802-77983821 Msa0574450:CDS 50.0%
CTCAGTAGATCGTGGTAGCA+AGG + chr4_1:77984568-77984587 Msa0574450:intron 50.0%
CAGGGTTCAAGTGGTGTAGA+TGG + chr4_1:77984686-77984705 Msa0574450:intron 50.0%
AGGGGGCAATTAATGGGAAG+TGG + chr4_1:77984725-77984744 Msa0574450:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + chr4_1:77984728-77984747 Msa0574450:CDS 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + chr4_1:77984887-77984906 Msa0574450:CDS 50.0%
!! ACCAAGTTGGTTATTCCGGC+AGG + chr4_1:77985261-77985280 Msa0574450:three_prime_UTR 50.0%
TGATGCAGATGCAGGTGCCT+TGG + chr4_1:77983462-77983481 Msa0574450:CDS 55.0%
GATGCAGATGCAGGTGCCTT+GGG + chr4_1:77983463-77983482 Msa0574450:CDS 55.0%
! TCTTGCTGTCTTGGCTCCCA+AGG - chr4_1:77983482-77983501 None:intergenic 55.0%
ACAGCACAAGCATGGCACAG+TGG + chr4_1:77983661-77983680 Msa0574450:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - chr4_1:77983790-77983809 None:intergenic 55.0%
CCACTTGTTCCTGAACTCGG+AGG + chr4_1:77983787-77983806 Msa0574450:CDS 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + chr4_1:77984361-77984380 Msa0574450:CDS 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - chr4_1:77984381-77984400 None:intergenic 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + chr4_1:77984737-77984756 Msa0574450:CDS 55.0%
GCCTGCCGGAATAACCAACT+TGG - chr4_1:77985265-77985284 None:intergenic 55.0%
TGATGCAGATGCAGGTGCCT+TGG + chr4_1:77983462-77983481 Msa0574450:CDS 55.0%
GATGCAGATGCAGGTGCCTT+GGG + chr4_1:77983463-77983482 Msa0574450:CDS 55.0%
! TCTTGCTGTCTTGGCTCCCA+AGG - chr4_1:77983482-77983501 None:intergenic 55.0%
ACAGCACAAGCATGGCACAG+TGG + chr4_1:77983661-77983680 Msa0574450:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - chr4_1:77983790-77983809 None:intergenic 55.0%
CCACTTGTTCCTGAACTCGG+AGG + chr4_1:77983787-77983806 Msa0574450:CDS 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + chr4_1:77984361-77984380 Msa0574450:CDS 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - chr4_1:77984381-77984400 None:intergenic 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + chr4_1:77984737-77984756 Msa0574450:CDS 55.0%
GCCTGCCGGAATAACCAACT+TGG - chr4_1:77985265-77985284 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77983284 77985397 77983284 ID=Msa0574450;Name=Msa0574450
chr4_1 mRNA 77983284 77985397 77983284 ID=Msa0574450-mRNA-1;Parent=Msa0574450;Name=Msa0574450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170|1|1|1|1|1|2|457|412
chr4_1 exon 77983284 77984440 77983284 ID=Msa0574450-mRNA-1:exon:27553;Parent=Msa0574450-mRNA-1
chr4_1 exon 77984689 77985397 77984689 ID=Msa0574450-mRNA-1:exon:27554;Parent=Msa0574450-mRNA-1
chr4_1 five_prime_UTR 77983284 77983453 77983284 ID=Msa0574450-mRNA-1:five_prime_utr;Parent=Msa0574450-mRNA-1
chr4_1 CDS 77983454 77984440 77983454 ID=Msa0574450-mRNA-1:cds;Parent=Msa0574450-mRNA-1
chr4_1 CDS 77984689 77984940 77984689 ID=Msa0574450-mRNA-1:cds;Parent=Msa0574450-mRNA-1
chr4_1 three_prime_UTR 77984941 77985397 77984941 ID=Msa0574450-mRNA-1:three_prime_utr;Parent=Msa0574450-mRNA-1
Gene Sequence

>Msa0574450

ATGAAAGGTGATGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTCCTTTGTCATGGTTGTGACAATTTGGTTCACTCTGCAAATCAATTAGCAAGTAGACACGAAAGGGTTCGCCTTCAAACTGCGTCTGCTAAGGTAACAACAACAGCACAAGCATGGCACAGTGGATTCACAAGGAAAGCAAGAACGCCCCGTCACAACAAAAATTTGTCGATTCAACAACAACAGCAACGTCTCAAGGAAAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAACTCGGAGGTGATGAAGAACAAGGACAAGAACTACTGGTTGATATTGATGAGGCTGATGAGGAGCAGTTGCTGTGTCGTGTGCCAGTTTTCGATGTCAGCCCTTTCGATTTAGAGACTTGTACTGTGAAAAATGATGCTGTTGATTTTGAGGAAATGTGTGACTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCAAGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATGCATCCAAAAATGAAATGTTAAAGGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGACGTGACAAGTGATGAGGTTTTTCATTGGAATATTGATCATAATGATGTATCACTAGCACAACAAGAGAAAGAGTTTATGCCTTTCAGTAATAGTAGTGTTGGTTACAGTGAGAGTGTTATTACTAAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTACTGAATGGAGCAGGCAAGGTTCTCCTTCTCCATGGACTACTGCAAACCCTCCTAAGTTCAATTGTGATGATGATTCATGGCAAAACTTATTGGGTTCAAGTGGTGTAGATGGAGAAGTAAGAAGCTTAAGGGGGCAATTAATGGGAAGTGGTGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACACGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGACGTTTTGTTAAGAGGACAGCATGTTTTGCTGGAGGAGCTACTTCTTTTCCAACTAATTACCACTGA

Protein sequence

>Msa0574450

MKGDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNLSIQQQQQRLKEKVLFNTSFLPLVPELGGDEEQGQELLVDIDEADEEQLLCRVPVFDVSPFDLETCTVKNDAVDFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIQENSSGQVFDYKQENEMDASKNEMLKVKDEELDDLESVFDVTSDEVFHWNIDHNDVSLAQQEKEFMPFSNSSVGYSESVITKEETKRERFLRLNYEEVITEWSRQGSPSPWTTANPPKFNCDDDSWQNLLGSSGVDGEVRSLRGQLMGSGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGATSFPTNYH*