AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463980 MtrunA17_Chr3g0114521 99.229 389 3 0 1 389 1 389 0.0 792
Msa0463980 MtrunA17_Chr2g0315761 55.556 342 151 1 48 389 55 395 3.03e-137 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463980 AT2G40490.1 77.926 376 80 2 15 389 21 394 0.0 609
Msa0463980 AT3G14930.2 53.026 347 162 1 43 389 54 399 1.64e-138 401
Msa0463980 AT3G14930.1 53.026 347 162 1 43 389 54 399 1.64e-138 401
Msa0463980 AT3G14930.3 54.180 323 147 1 67 389 1 322 1.17e-129 376

Find 117 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTCTTACACCACTTTC+TGG 0.157805 3_3:-63543707 Msa0463980:CDS
TTTCAGACAAACGCAGATTT+TGG 0.175740 3_3:+63545048 None:intergenic
ATTCCATTTGACATTGTAAA+AGG 0.206118 3_3:-63543677 Msa0463980:CDS
GTTACGGTACGGGCGAAGTA+TGG 0.216344 3_3:+63545119 None:intergenic
TTGCAGTTAATATAAGATTT+TGG 0.231158 3_3:-63540378 Msa0463980:three_prime_UTR
AATGGATTTGAATGGGTAAA+AGG 0.250908 3_3:+63544936 None:intergenic
TCAATTATTTGCTTCAAGTA+TGG 0.290572 3_3:+63540797 None:intergenic
ACTTGGCCTGCGGAGTGAAC+TGG 0.306505 3_3:+63543632 None:intergenic
AAATGTCGTTCTATATTTAG+AGG 0.312910 3_3:+63540259 None:intergenic
TCCATTCAATGTTCTCTTCC+AGG 0.315235 3_3:-63544919 Msa0463980:intron
CTTGGATTGGACGGTTGATA+TGG 0.339881 3_3:-63540672 Msa0463980:CDS
AACTTAGTATTTGATTCCTT+TGG 0.358951 3_3:+63540445 None:intergenic
GTTGATCCTGGTGTTCTGTT+TGG 0.376386 3_3:-63540602 Msa0463980:CDS
TTTCTCTAAAATAAAGAGAT+TGG 0.380766 3_3:-63541599 Msa0463980:CDS
ATCCTCTATGCAAGTGGATC+AGG 0.396912 3_3:-63540740 Msa0463980:CDS
CGATGCCGTGACCAAGGTTC+AGG 0.397386 3_3:+63540513 None:intergenic
TTGATATGGCTGACGGTAGA+AGG 0.402561 3_3:-63540658 Msa0463980:CDS
GAACATTGAATGGATTTGAA+TGG 0.412640 3_3:+63544928 None:intergenic
TAGAGGATAAGAGGGAGTTC+TGG 0.412953 3_3:+63540755 None:intergenic
GGCTGACGGTAGAAGGAGAT+TGG 0.418136 3_3:-63540651 Msa0463980:CDS
ATGGACTACTAGATCATGAT+TGG 0.420864 3_3:-63545164 None:intergenic
CCACTTGCATAGAGGATAAG+AGG 0.422510 3_3:+63540746 None:intergenic
CTGTACAGATATTCGATTCA+TGG 0.424244 3_3:-63540862 Msa0463980:CDS
AACATTGAATGGATTTGAAT+GGG 0.425887 3_3:+63544929 None:intergenic
ACATACGACGCCAGGGTAAA+CGG 0.433300 3_3:+63541646 None:intergenic
GATAATAAATCTGCAGTCCT+TGG 0.434879 3_3:-63541682 Msa0463980:CDS
GCGAAGTATGGGAAGGATAA+GGG 0.435189 3_3:+63545131 None:intergenic
TTACCTTGGATAGCTACATT+TGG 0.446082 3_3:+63540626 None:intergenic
GAGAGTTATATTACCCCATC+AGG 0.452559 3_3:+63543860 None:intergenic
GCTTGTCTCATAAGCCAAAC+AGG 0.452792 3_3:+63544634 None:intergenic
GGCGAAGTATGGGAAGGATA+AGG 0.453863 3_3:+63545130 None:intergenic
ATGTCGAAAGACCTCCTGTT+TGG 0.460725 3_3:-63544648 Msa0463980:CDS
CTTGGCCTGCGGAGTGAACT+GGG 0.461901 3_3:+63543633 None:intergenic
CTTGCGCTCCATTGTCAGCT+TGG 0.463609 3_3:+63540885 None:intergenic
CAGATCTTTCCCGGAATGAC+GGG 0.470670 3_3:+63543936 None:intergenic
AACGTATGGAACTGATTCCT+CGG 0.471977 3_3:+63543586 None:intergenic
CTGGCGTCGTATGTGGTTGA+AGG 0.472993 3_3:-63541637 Msa0463980:CDS
GTTTACCCTGGCGTCGTATG+TGG 0.473968 3_3:-63541644 Msa0463980:CDS
GTTGAGTTTCAGCTATGTTA+CGG 0.483371 3_3:+63545103 None:intergenic
CGAACTGCATTGAGCAAAAG+AGG 0.487266 3_3:+63544679 None:intergenic
CACGATACCGTGAGAAAGGC+TGG 0.489317 3_3:-63540551 Msa0463980:CDS
AAATGTGCTACATTCTCCTC+AGG 0.494178 3_3:+63540479 None:intergenic
CTTGGTCACGGCATCGTAGT+AGG 0.496571 3_3:-63540506 Msa0463980:CDS
TTACGGTACGGGCGAAGTAT+GGG 0.496606 3_3:+63545120 None:intergenic
GGAATATTCATTCCAGAAAG+TGG 0.500259 3_3:+63543695 None:intergenic
GTTTGGCTTATGAGACAAGC+TGG 0.502036 3_3:-63544631 Msa0463980:CDS
ACCTGGAAGAGAACATTGAA+TGG 0.506655 3_3:+63544918 None:intergenic
CTTCAACCACATACGACGCC+AGG 0.512222 3_3:+63541638 None:intergenic
CGGTGTGGATGTTGTAAGCT+TGG 0.514049 3_3:-63540690 Msa0463980:CDS
AATTTCATTGCAACCGTGGA+AGG 0.514515 3_3:-63543891 Msa0463980:CDS
CTGAATCGTTCAAAATCCAC+TGG 0.515548 3_3:+63540824 None:intergenic
TGTGGGTGCTCCGTTTACCC+TGG 0.516470 3_3:-63541656 Msa0463980:CDS
CCCTCTACCAGCCTTTCTCA+CGG 0.518645 3_3:+63540544 None:intergenic
GCAAAAGTTTACAACATCAA+TGG 0.520601 3_3:-63540924 Msa0463980:CDS
ATTTGACATTGTAAAAGGCA+AGG 0.524512 3_3:-63543672 Msa0463980:CDS
GCTGACGGTAGAAGGAGATT+GGG 0.526942 3_3:-63540650 Msa0463980:CDS
GATACACGATACCGTGAGAA+AGG 0.528071 3_3:-63540555 Msa0463980:CDS
ACCGTGAGAAAGGCTGGTAG+AGG 0.529078 3_3:-63540545 Msa0463980:CDS
TGGATGTTGTAAGCTTGGAT+TGG 0.533084 3_3:-63540685 Msa0463980:CDS
ATCCAAGGTAATGTTGATCC+TGG 0.536465 3_3:-63540614 Msa0463980:CDS
GTTTCAGCTATGTTACGGTA+CGG 0.536484 3_3:+63545108 None:intergenic
ATGGATTTGAATGGGTAAAA+GGG 0.537828 3_3:+63544937 None:intergenic
TCAGATCTTTCCCGGAATGA+CGG 0.538694 3_3:+63543935 None:intergenic
GTTATATTACCCCATCAGGC+TGG 0.542394 3_3:+63543864 None:intergenic
ATCTGAAAACGTTGATCTTG+TGG 0.544982 3_3:-63543918 Msa0463980:CDS
CACCAGGATCAACATTACCT+TGG 0.550632 3_3:+63540612 None:intergenic
TGGACTACTAGATCATGATT+GGG 0.552999 3_3:-63545163 None:intergenic
TTTCAGCTATGTTACGGTAC+GGG 0.555929 3_3:+63545109 None:intergenic
TGTACAGATATTCGATTCAT+GGG 0.557652 3_3:-63540861 Msa0463980:CDS
TTTGACCCAGTTCACTCCGC+AGG 0.557974 3_3:-63543638 Msa0463980:CDS
CACGGTATCGTGTATCCTAT+CGG 0.559155 3_3:+63540562 None:intergenic
CCTCTTATCCTCTATGCAAG+TGG 0.559600 3_3:-63540746 Msa0463980:CDS
CTTGAGAGAATAGCATTGAC+CGG 0.561094 3_3:-63540710 Msa0463980:CDS
GATAGTGCTTCACCAACGTA+TGG 0.570324 3_3:+63543572 None:intergenic
CTCCTGATCCACTTGCATAG+AGG 0.573987 3_3:+63540738 None:intergenic
GCTAACTACACCGCAAAACA+TGG 0.575089 3_3:+63545005 None:intergenic
TTTGACATTGTAAAAGGCAA+GGG 0.580301 3_3:-63543671 Msa0463980:CDS
GTGAACTGGGTCAAATATGA+CGG 0.581289 3_3:+63543646 None:intergenic
CACTTGATCAACTTGGCCTG+CGG 0.582378 3_3:+63543622 None:intergenic
TTTGAATGGGTAAAAGGGTG+TGG 0.582685 3_3:+63544942 None:intergenic
ACGTATGGAACTGATTCCTC+GGG 0.583383 3_3:+63543587 None:intergenic
CTCTATGCAAGTGGATCAGG+AGG 0.584281 3_3:-63540737 Msa0463980:CDS
GGACCAAATGTAGCTATCCA+AGG 0.588652 3_3:-63540629 Msa0463980:CDS
TGTTGTAAGCTTGGATTGGA+CGG 0.589620 3_3:-63540681 Msa0463980:CDS
ACTCCCTCACTTGATCAACT+TGG 0.589624 3_3:+63543615 None:intergenic
ATTGGCATTCTCTGAACCAA+AGG 0.592895 3_3:-63541581 Msa0463980:intron
TGAACTGGGTCAAATATGAC+GGG 0.600113 3_3:+63543647 None:intergenic
CACTTGCATAGAGGATAAGA+GGG 0.600254 3_3:+63540747 None:intergenic
GGGAAACATATCCTGAACCT+TGG 0.602324 3_3:-63540524 Msa0463980:CDS
CGAAAGAGCTGATTACCGAT+AGG 0.604713 3_3:-63540577 Msa0463980:CDS
TTTGGCTTATGAGACAAGCT+GGG 0.604715 3_3:-63544630 Msa0463980:CDS
TTCGATCCAAACAGAACACC+AGG 0.613403 3_3:+63540596 None:intergenic
ACAAGCTGGGAGGTACATGA+AGG 0.615658 3_3:-63544617 Msa0463980:intron
GGCAACAGAGCTTAGTCCAG+TGG 0.616272 3_3:-63540840 Msa0463980:CDS
CAGGCCAAGTTGATCAAGTG+AGG 0.617997 3_3:-63543619 Msa0463980:CDS
CTACTACGATGCCGTGACCA+AGG 0.620641 3_3:+63540507 None:intergenic
GGATAAGAGGGAGTTCTGGA+TGG 0.622692 3_3:+63540759 None:intergenic
TCAGGCTGGAAAACCTTCCA+CGG 0.624106 3_3:+63543878 None:intergenic
ATACAATACCAAGCTGACAA+TGG 0.630738 3_3:-63540893 Msa0463980:CDS
TTGAAATTTCATTGCAACCG+TGG 0.633557 3_3:-63543895 Msa0463980:CDS
TTCAACCACATACGACGCCA+GGG 0.634894 3_3:+63541639 None:intergenic
GCGTCGTATGTGGTTGAAGG+CGG 0.638298 3_3:-63541634 Msa0463980:CDS
ATTGAGCAAAAGAGGTTCTG+TGG 0.641274 3_3:+63544687 None:intergenic
CCGTGAGAAAGGCTGGTAGA+GGG 0.642675 3_3:-63540544 Msa0463980:CDS
ATGGGTAAAAGGGTGTGGTG+TGG 0.645380 3_3:+63544947 None:intergenic
AGGCCAAGTTGATCAAGTGA+GGG 0.645695 3_3:-63543618 Msa0463980:CDS
AGTGAGGGAGTTTATTCCCG+AGG 0.654388 3_3:-63543603 Msa0463980:CDS
CATATCCTGAACCTTGGTCA+CGG 0.656692 3_3:-63540518 Msa0463980:CDS
TGGACGGTTGATATGGCTGA+CGG 0.660456 3_3:-63540665 Msa0463980:CDS
GGCTTATGAGACAAGCTGGG+AGG 0.683527 3_3:-63544627 Msa0463980:CDS
GAGAATAGCATTGACCGGTG+TGG 0.684858 3_3:-63540705 Msa0463980:CDS
ACGGAGCACCCACAAAACCA+AGG 0.689374 3_3:+63541665 None:intergenic
GGTACGGGCGAAGTATGGGA+AGG 0.692117 3_3:+63545124 None:intergenic
GAGGAATCAGTTCCATACGT+TGG 0.710365 3_3:-63543584 Msa0463980:CDS
CATCGTAGTAGGTACTCCTG+AGG 0.717142 3_3:-63540495 Msa0463980:CDS
CAAGCTTACAACATCCACAC+CGG 0.721621 3_3:+63540691 None:intergenic
TGTCTCATAAGCCAAACAGG+AGG 0.741224 3_3:+63544637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTCTATTTATTTTTT+TGG - chr3_3:63543198-63543217 Msa0463980:intron 10.0%
!! AATAAAATTGATTATTTCAA+GGG + chr3_3:63544031-63544050 None:intergenic 10.0%
!! AAATAAAATTGATTATTTCA+AGG + chr3_3:63544032-63544051 None:intergenic 10.0%
!!! TTTTATTTGTTCTTATCTTT+TGG - chr3_3:63542972-63542991 Msa0463980:intron 15.0%
!! GAATTATAAAACAAACAAAA+AGG + chr3_3:63543258-63543277 None:intergenic 15.0%
!!! CTTTATTAAATTGAAAGTAT+TGG - chr3_3:63543688-63543707 Msa0463980:CDS 15.0%
!! ATAAAATTGATTATTTCAAG+GGG + chr3_3:63544030-63544049 None:intergenic 15.0%
!! TAAATGTTAATGATAGAAGA+TGG + chr3_3:63540534-63540553 None:intergenic 20.0%
!! AATAAGGTTTACACAATAAT+GGG + chr3_3:63540604-63540623 None:intergenic 20.0%
!! AAATAAGGTTTACACAATAA+TGG + chr3_3:63540605-63540624 None:intergenic 20.0%
!!! TGTAAACCTTATTTAATGAT+GGG - chr3_3:63540611-63540630 Msa0463980:CDS 20.0%
!!! CAAAAGTATAACAAACAATT+AGG + chr3_3:63540823-63540842 None:intergenic 20.0%
!! TATTAAAAAGAAATTGCGAT+TGG - chr3_3:63541128-63541147 Msa0463980:intron 20.0%
!!! ATTTAGAACAAGATAAGTAT+AGG + chr3_3:63541337-63541356 None:intergenic 20.0%
!! CTATAAAATAAAAAGAAGTG+CGG + chr3_3:63541919-63541938 None:intergenic 20.0%
!! AGATTTATGAATCATCAATT+TGG - chr3_3:63542155-63542174 Msa0463980:intron 20.0%
!! GATTTGTAAATTCTAATCAA+CGG + chr3_3:63542299-63542318 None:intergenic 20.0%
!!! TCTGTACTTTTTATTTAAAG+TGG + chr3_3:63542549-63542568 None:intergenic 20.0%
!! TGTCAAATAATAAAAAAAGC+AGG - chr3_3:63543129-63543148 Msa0463980:intron 20.0%
!!! CTTAGATAAAGTTTTAGTAA+GGG + chr3_3:63543350-63543369 None:intergenic 20.0%
!!! TCTTAGATAAAGTTTTAGTA+AGG + chr3_3:63543351-63543370 None:intergenic 20.0%
!!! TTTCTCTAAAATAAAGAGAT+TGG - chr3_3:63543803-63543822 Msa0463980:intron 20.0%
!! TAATAAAGAAGCAAACAAAT+TGG + chr3_3:63544310-63544329 None:intergenic 20.0%
!!! TTGCAGTTAATATAAGATTT+TGG - chr3_3:63545024-63545043 Msa0463980:exon 20.0%
!!! TTGTCAATATTTTATTTCTG+CGG - chr3_3:63545048-63545067 Msa0463980:five_prime_UTR 20.0%
!! AACATTGAATGGATTTGAAT+GGG + chr3_3:63540476-63540495 None:intergenic 25.0%
! TAATAAATGGAAGTAATACC+TGG + chr3_3:63540504-63540523 None:intergenic 25.0%
! AGGTATTACTTCCATTTATT+AGG - chr3_3:63540503-63540522 Msa0463980:CDS 25.0%
! GGTATTACTTCCATTTATTA+GGG - chr3_3:63540504-63540523 Msa0463980:CDS 25.0%
!! GTGTAAACCTTATTTAATGA+TGG - chr3_3:63540610-63540629 Msa0463980:CDS 25.0%
!! TTGTTATGCATCTGAATTTT+GGG - chr3_3:63540649-63540668 Msa0463980:CDS 25.0%
! TGTGTATTCGTATTAGAATT+TGG - chr3_3:63540853-63540872 Msa0463980:CDS 25.0%
! GTGTATTCGTATTAGAATTT+GGG - chr3_3:63540854-63540873 Msa0463980:CDS 25.0%
!! TCTATTCAAGTACTACATTT+TGG + chr3_3:63541073-63541092 None:intergenic 25.0%
!!! CTGTTGAAAATGTTCTAAAA+TGG + chr3_3:63541249-63541268 None:intergenic 25.0%
! ATTCAGCTCAATTATTTGTT+TGG - chr3_3:63541282-63541301 Msa0463980:intron 25.0%
! ATTCCATTTGACATTGTAAA+AGG - chr3_3:63541725-63541744 Msa0463980:intron 25.0%
! CTAAAAAACATACAGTCTTA+TGG + chr3_3:63541978-63541997 None:intergenic 25.0%
! ACTGAATGATTGTTTAATAG+AGG - chr3_3:63542387-63542406 Msa0463980:intron 25.0%
! AAAAATATAACCAGTTCAGT+TGG + chr3_3:63542503-63542522 None:intergenic 25.0%
! AAAGTACAATAAGAGAATGT+AGG - chr3_3:63542598-63542617 Msa0463980:intron 25.0%
! AAGTACAATAAGAGAATGTA+GGG - chr3_3:63542599-63542618 Msa0463980:intron 25.0%
! AAAACAGACATATTTGATGT+CGG - chr3_3:63543377-63543396 Msa0463980:intron 25.0%
! AAAGAAAAAAGCAAAGCATA+GGG + chr3_3:63543672-63543691 None:intergenic 25.0%
! TAAAGAAAAAAGCAAAGCAT+AGG + chr3_3:63543673-63543692 None:intergenic 25.0%
!!! ATTATTTTGAGAAGCTAGTT+TGG - chr3_3:63544131-63544150 Msa0463980:intron 25.0%
!!! TTATTTTGAGAAGCTAGTTT+GGG - chr3_3:63544132-63544151 Msa0463980:intron 25.0%
!! TATAATTTTGCGTATCACAA+TGG - chr3_3:63544198-63544217 Msa0463980:intron 25.0%
! TCAATTATTTGCTTCAAGTA+TGG + chr3_3:63544608-63544627 None:intergenic 25.0%
! AACTTAGTATTTGATTCCTT+TGG + chr3_3:63544960-63544979 None:intergenic 25.0%
! AAATGTCGTTCTATATTTAG+AGG + chr3_3:63545146-63545165 None:intergenic 25.0%
! TTGAATTCAACCATGTTTTG+CGG - chr3_3:63540387-63540406 Msa0463980:three_prime_UTR 30.0%
ATGGATTTGAATGGGTAAAA+GGG + chr3_3:63540468-63540487 None:intergenic 30.0%
! AATGGATTTGAATGGGTAAA+AGG + chr3_3:63540469-63540488 None:intergenic 30.0%
! GAACATTGAATGGATTTGAA+TGG + chr3_3:63540477-63540496 None:intergenic 30.0%
AGATGGAAAACCCTAATAAA+TGG + chr3_3:63540517-63540536 None:intergenic 30.0%
CACAAACCCATCATTAAATA+AGG + chr3_3:63540620-63540639 None:intergenic 30.0%
! GTTGTTATGCATCTGAATTT+TGG - chr3_3:63540648-63540667 Msa0463980:CDS 30.0%
!! AATTTTGGGAATTTATGTGC+AGG - chr3_3:63540663-63540682 Msa0463980:CDS 30.0%
ATTCGTATTAGAATTTGGGT+TGG - chr3_3:63540858-63540877 Msa0463980:CDS 30.0%
! TTCGTATTAGAATTTGGGTT+GGG - chr3_3:63540859-63540878 Msa0463980:CDS 30.0%
CCTGACAATGTGTTTATAAT+TGG + chr3_3:63540923-63540942 None:intergenic 30.0%
CCAATTATAAACACATTGTC+AGG - chr3_3:63540920-63540939 Msa0463980:CDS 30.0%
GAACATCCAAATTTAGTGAT+TGG - chr3_3:63540982-63541001 Msa0463980:intron 30.0%
CAAACACCAATCACTAAATT+TGG + chr3_3:63540991-63541010 None:intergenic 30.0%
ACTCTGTTTAACATATGCAA+TGG - chr3_3:63541092-63541111 Msa0463980:intron 30.0%
CTCTGTTTAACATATGCAAT+GGG - chr3_3:63541093-63541112 Msa0463980:intron 30.0%
ACTTTGTGTGAAACTAAGAT+TGG - chr3_3:63541188-63541207 Msa0463980:intron 30.0%
AAAACCAATTTGACGTTTAG+TGG + chr3_3:63541361-63541380 None:intergenic 30.0%
!! CTTCTTGAATAAGCTTTGAA+AGG - chr3_3:63541384-63541403 Msa0463980:intron 30.0%
! TTGCCTTTTACAATGTCAAA+TGG + chr3_3:63541731-63541750 None:intergenic 30.0%
ATTTGACATTGTAAAAGGCA+AGG - chr3_3:63541730-63541749 Msa0463980:intron 30.0%
TTTGACATTGTAAAAGGCAA+GGG - chr3_3:63541731-63541750 Msa0463980:intron 30.0%
ATGATAAAACAGGGATACAA+AGG + chr3_3:63541891-63541910 None:intergenic 30.0%
! CTATATGGTTTAGTTCAGTT+CGG + chr3_3:63542269-63542288 None:intergenic 30.0%
GTAAATTCTAATCAACGGTT+CGG + chr3_3:63542294-63542313 None:intergenic 30.0%
! ATGTTTTGTAGACAGTTAAC+CGG - chr3_3:63542325-63542344 Msa0463980:intron 30.0%
!!! AGAGAGCTTTGTTTCATTTT+AGG - chr3_3:63542445-63542464 Msa0463980:intron 30.0%
!!! TTTGTTTCATTTTAGGACAG+TGG - chr3_3:63542452-63542471 Msa0463980:intron 30.0%
!!! TTGTTTCATTTTAGGACAGT+GGG - chr3_3:63542453-63542472 Msa0463980:intron 30.0%
ATTAAAATGTCCAACTGAAC+TGG - chr3_3:63542490-63542509 Msa0463980:intron 30.0%
AGTAGTATTTATAGCCTCTA+TGG - chr3_3:63542681-63542700 Msa0463980:intron 30.0%
GTAGTATTTATAGCCTCTAT+GGG - chr3_3:63542682-63542701 Msa0463980:intron 30.0%
! CTAAGCCTTTAGGAATATTA+TGG - chr3_3:63542885-63542904 Msa0463980:intron 30.0%
AAACCATTTCAAGAAAGAGA+AGG - chr3_3:63543098-63543117 Msa0463980:intron 30.0%
TTTCCTTCTCTTTCTTGAAA+TGG + chr3_3:63543104-63543123 None:intergenic 30.0%
TGGCAGAAACACAAATTTAA+TGG + chr3_3:63543280-63543299 None:intergenic 30.0%
AACATATCCACTAAGTTACT+TGG + chr3_3:63543300-63543319 None:intergenic 30.0%
!! GATAAAGTTTTAGTAAGGGA+AGG + chr3_3:63543346-63543365 None:intergenic 30.0%
!! TTCAGTTTTGTGAATCATGT+CGG - chr3_3:63543507-63543526 Msa0463980:intron 30.0%
GATTAGATAATTAGAGTCTC+TGG + chr3_3:63543588-63543607 None:intergenic 30.0%
AAGAAAAAAGCAAAGCATAG+GGG + chr3_3:63543671-63543690 None:intergenic 30.0%
! TCATTGGTTATTGTGTAGAA+AGG + chr3_3:63543963-63543982 None:intergenic 30.0%
TAACCAATGAGTTCTTAAAC+TGG - chr3_3:63543973-63543992 Msa0463980:intron 30.0%
ACATTTGGAAAAGCTTACAA+TGG - chr3_3:63544228-63544247 Msa0463980:intron 30.0%
! ATGGACAGCTTTTTAATCAT+AGG + chr3_3:63544273-63544292 None:intergenic 30.0%
ATTGGTAAGCATGAATCATA+TGG + chr3_3:63544292-63544311 None:intergenic 30.0%
GCAAAAGTTTACAACATCAA+TGG - chr3_3:63544478-63544497 Msa0463980:intron 30.0%
TGTACAGATATTCGATTCAT+GGG - chr3_3:63544541-63544560 Msa0463980:intron 30.0%
!!! GAATGTAGCACATTTTTTTG+AGG - chr3_3:63544931-63544950 Msa0463980:CDS 30.0%
GTTGAGTTTCAGCTATGTTA+CGG + chr3_3:63540302-63540321 None:intergenic 35.0%
! TTCAGACAAACGCAGATTTT+GGG + chr3_3:63540356-63540375 None:intergenic 35.0%
! TTTCAGACAAACGCAGATTT+TGG + chr3_3:63540357-63540376 None:intergenic 35.0%
!!! GTGTTGTTTTCTGGGTAAAA+TGG + chr3_3:63540436-63540455 None:intergenic 35.0%
!!! ATGATGGGTTTGTGTTGTTT+TGG - chr3_3:63540626-63540645 Msa0463980:CDS 35.0%
!! TCTGTGGCATTAGTTGTTTT+AGG + chr3_3:63540702-63540721 None:intergenic 35.0%
TTGTCAGGTCATATGTCATT+TGG - chr3_3:63540935-63540954 Msa0463980:CDS 35.0%
! TGTCAGGTCATATGTCATTT+GGG - chr3_3:63540936-63540955 Msa0463980:CDS 35.0%
GGATTGTCACATTCTTTGTA+TGG - chr3_3:63541303-63541322 Msa0463980:intron 35.0%
GTCACATTCTTTGTATGGTT+TGG - chr3_3:63541308-63541327 Msa0463980:intron 35.0%
AATGCCACTAAACGTCAAAT+TGG - chr3_3:63541354-63541373 Msa0463980:intron 35.0%
! GGTATTTTTCGCAGATGATT+TGG + chr3_3:63541448-63541467 None:intergenic 35.0%
ATCTGAAAACGTTGATCTTG+TGG - chr3_3:63541484-63541503 Msa0463980:intron 35.0%
TTGAAATTTCATTGCAACCG+TGG - chr3_3:63541507-63541526 Msa0463980:intron 35.0%
!! TGTTGTGGTTCTGATTATGT+TGG - chr3_3:63541622-63541641 Msa0463980:CDS 35.0%
GATATTCTTACACCACTTTC+TGG - chr3_3:63541695-63541714 Msa0463980:intron 35.0%
GGAATATTCATTCCAGAAAG+TGG + chr3_3:63541710-63541729 None:intergenic 35.0%
! ACTATCAATTTTGCGCAAAG+AGG - chr3_3:63541847-63541866 Msa0463980:intron 35.0%
TGGAATTTGACTAAACAGAC+AGG + chr3_3:63541958-63541977 None:intergenic 35.0%
TGATTGCGAATCATAGATAG+AGG - chr3_3:63542040-63542059 Msa0463980:intron 35.0%
GATTGCGAATCATAGATAGA+GGG - chr3_3:63542041-63542060 Msa0463980:intron 35.0%
ATTGCGAATCATAGATAGAG+GGG - chr3_3:63542042-63542061 Msa0463980:intron 35.0%
! CATATTATCTTGATAGCCAC+TGG + chr3_3:63542124-63542143 None:intergenic 35.0%
CGTCTTAAATAGTAGTTACC+TGG - chr3_3:63542213-63542232 Msa0463980:intron 35.0%
! TGTTTTGTAGACAGTTAACC+GGG - chr3_3:63542326-63542345 Msa0463980:intron 35.0%
AACTCTTCAAAATTTCAGCC+CGG + chr3_3:63542347-63542366 None:intergenic 35.0%
! AGGGTTAAGTATCGTATTCT+AGG - chr3_3:63542618-63542637 Msa0463980:intron 35.0%
! GGGTTAAGTATCGTATTCTA+GGG - chr3_3:63542619-63542638 Msa0463980:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG - chr3_3:63542636-63542655 Msa0463980:intron 35.0%
! AGGTTTCTAGAAGCTTAGAT+GGG - chr3_3:63542769-63542788 Msa0463980:intron 35.0%
! AGCCTTTAGGAATATTATGG+CGG - chr3_3:63542888-63542907 Msa0463980:intron 35.0%
AACCGCCATAATATTCCTAA+AGG + chr3_3:63542893-63542912 None:intergenic 35.0%
GTATGTGCAATAAAGAGAGA+AGG + chr3_3:63543236-63543255 None:intergenic 35.0%
TGTGGAAATTCAACACAGTT+TGG - chr3_3:63543410-63543429 Msa0463980:intron 35.0%
GTGGAAATTCAACACAGTTT+GGG - chr3_3:63543411-63543430 Msa0463980:intron 35.0%
TCAAAACTGAACTACTCTAC+TGG + chr3_3:63543466-63543485 None:intergenic 35.0%
TTCACAAAACTGAATCGAAC+TGG + chr3_3:63543501-63543520 None:intergenic 35.0%
AGATAATTAGAGTCTCTGGT+GGG + chr3_3:63543584-63543603 None:intergenic 35.0%
TAGATAATTAGAGTCTCTGG+TGG + chr3_3:63543585-63543604 None:intergenic 35.0%
!! AAATTGAAAGTATTGGTCGC+AGG - chr3_3:63543695-63543714 Msa0463980:CDS 35.0%
GATAATAAATCTGCAGTCCT+TGG - chr3_3:63543720-63543739 Msa0463980:CDS 35.0%
AGGTGGTTAAAGATTACCTT+TGG + chr3_3:63543840-63543859 None:intergenic 35.0%
TTATTCAGCAGTTCAAAACC+TGG - chr3_3:63543928-63543947 Msa0463980:CDS 35.0%
TGACCAGTTTAAGAACTCAT+TGG + chr3_3:63543979-63543998 None:intergenic 35.0%
CTTAAACTGGTCATTTAGAG+CGG - chr3_3:63543986-63544005 Msa0463980:intron 35.0%
AAGCTTACAATGGAAAAGCT+TGG - chr3_3:63544238-63544257 Msa0463980:intron 35.0%
TATGCTTTCAACTTTCAGAG+TGG - chr3_3:63544366-63544385 Msa0463980:intron 35.0%
ATACAATACCAAGCTGACAA+TGG - chr3_3:63544509-63544528 Msa0463980:intron 35.0%
CTGTACAGATATTCGATTCA+TGG - chr3_3:63544540-63544559 Msa0463980:intron 35.0%
TTACCTTGGATAGCTACATT+TGG + chr3_3:63544779-63544798 None:intergenic 35.0%
!!! CATTTTTTTGAGGTTGCCAA+AGG - chr3_3:63544941-63544960 Msa0463980:CDS 35.0%
TTTCAGCTATGTTACGGTAC+GGG + chr3_3:63540296-63540315 None:intergenic 40.0%
GTTTCAGCTATGTTACGGTA+CGG + chr3_3:63540297-63540316 None:intergenic 40.0%
TTTGAATGGGTAAAAGGGTG+TGG + chr3_3:63540463-63540482 None:intergenic 40.0%
TCCATTCAATGTTCTCTTCC+AGG - chr3_3:63540483-63540502 Msa0463980:CDS 40.0%
ACCTGGAAGAGAACATTGAA+TGG + chr3_3:63540487-63540506 None:intergenic 40.0%
ATTGAGCAAAAGAGGTTCTG+TGG + chr3_3:63540718-63540737 None:intergenic 40.0%
! CTCTTTTGCTCAATGCAGTT+CGG - chr3_3:63540724-63540743 Msa0463980:CDS 40.0%
! TCTTTTGCTCAATGCAGTTC+GGG - chr3_3:63540725-63540744 Msa0463980:CDS 40.0%
! TTTGGCTTATGAGACAAGCT+GGG - chr3_3:63540772-63540791 Msa0463980:CDS 40.0%
TGTGTGAAACTAAGATTGGC+TGG - chr3_3:63541192-63541211 Msa0463980:intron 40.0%
! CAACGTTTTCAGATCTTTCC+CGG + chr3_3:63541478-63541497 None:intergenic 40.0%
AATTTCATTGCAACCGTGGA+AGG - chr3_3:63541511-63541530 Msa0463980:intron 40.0%
GAGAGTTATATTACCCCATC+AGG + chr3_3:63541545-63541564 None:intergenic 40.0%
TTACCCTACTTCTTGTGTTG+TGG - chr3_3:63541607-63541626 Msa0463980:CDS 40.0%
GAACCACAACACAAGAAGTA+GGG + chr3_3:63541613-63541632 None:intergenic 40.0%
AGAACCACAACACAAGAAGT+AGG + chr3_3:63541614-63541633 None:intergenic 40.0%
!! CTCGATACTGATTCTGTAAC+AGG - chr3_3:63541658-63541677 Msa0463980:CDS 40.0%
TGAACTGGGTCAAATATGAC+GGG + chr3_3:63541758-63541777 None:intergenic 40.0%
GTGAACTGGGTCAAATATGA+CGG + chr3_3:63541759-63541778 None:intergenic 40.0%
! AACGTATGGAACTGATTCCT+CGG + chr3_3:63541819-63541838 None:intergenic 40.0%
! ATTTTGCGCAAAGAGGTTTG+AGG - chr3_3:63541854-63541873 Msa0463980:intron 40.0%
GGGTGTAATGACATTAAGTG+AGG - chr3_3:63542062-63542081 Msa0463980:intron 40.0%
ATAGTAGTTACCTGGAGACT+AGG - chr3_3:63542221-63542240 Msa0463980:intron 40.0%
!! ATCAACGGTTCGGTTCTATA+TGG + chr3_3:63542284-63542303 None:intergenic 40.0%
GTTTAATAGAGGAAAGCTGC+TGG - chr3_3:63542398-63542417 Msa0463980:intron 40.0%
!!! TTTCATTTTAGGACAGTGGG+AGG - chr3_3:63542456-63542475 Msa0463980:intron 40.0%
!! TACTCTTGAGAGCATTCTCA+AGG + chr3_3:63542665-63542684 None:intergenic 40.0%
ATTTATAGCCTCTATGGGCT+TGG - chr3_3:63542687-63542706 Msa0463980:intron 40.0%
TTTATAGCCTCTATGGGCTT+GGG - chr3_3:63542688-63542707 Msa0463980:intron 40.0%
!!! CAGGGGTATTGGTGTATTTT+AGG - chr3_3:63542736-63542755 Msa0463980:intron 40.0%
!!! GGGTATTGGTGTATTTTAGG+CGG - chr3_3:63542739-63542758 Msa0463980:intron 40.0%
!! GTATTTTAGGCGGTTTCTAG+AGG - chr3_3:63542749-63542768 Msa0463980:intron 40.0%
! GAGGTTTCTAGAAGCTTAGA+TGG - chr3_3:63542768-63542787 Msa0463980:intron 40.0%
AAAAAGCAGGAAACGTGAAG+TGG - chr3_3:63543142-63543161 Msa0463980:intron 40.0%
GTTTCTGCCAAGTAACTTAG+TGG - chr3_3:63543290-63543309 Msa0463980:intron 40.0%
! AGGCATTGTTTGAGTCACTA+AGG + chr3_3:63543326-63543345 None:intergenic 40.0%
! ACTGAACTACTCTACTGGTT+TGG + chr3_3:63543461-63543480 None:intergenic 40.0%
ATTGGCATTCTCTGAACCAA+AGG - chr3_3:63543821-63543840 Msa0463980:intron 40.0%
AAGCACATCCTAAGTTCACA+TGG + chr3_3:63543899-63543918 None:intergenic 40.0%
GTAGAAAGGTAAAACATGCC+AGG + chr3_3:63543949-63543968 None:intergenic 40.0%
CACAATGGAGCTGTTACATT+TGG - chr3_3:63544213-63544232 Msa0463980:intron 40.0%
! ACTTTTGCAGTAACGAGTGA+AGG + chr3_3:63544466-63544485 None:intergenic 40.0%
CTGAATCGTTCAAAATCCAC+TGG + chr3_3:63544581-63544600 None:intergenic 40.0%
CACTTGCATAGAGGATAAGA+GGG + chr3_3:63544658-63544677 None:intergenic 40.0%
!! CTTGAGAGAATAGCATTGAC+CGG - chr3_3:63544692-63544711 Msa0463980:CDS 40.0%
TGGATGTTGTAAGCTTGGAT+TGG - chr3_3:63544717-63544736 Msa0463980:CDS 40.0%
! TGTTGTAAGCTTGGATTGGA+CGG - chr3_3:63544721-63544740 Msa0463980:intron 40.0%
ATCCAAGGTAATGTTGATCC+TGG - chr3_3:63544788-63544807 Msa0463980:intron 40.0%
AAATGTGCTACATTCTCCTC+AGG + chr3_3:63544926-63544945 None:intergenic 40.0%
GCGAAGTATGGGAAGGATAA+GGG + chr3_3:63540274-63540293 None:intergenic 45.0%
! CAAACGCAGATTTTGGGCTT+TGG + chr3_3:63540350-63540369 None:intergenic 45.0%
GCTAACTACACCGCAAAACA+TGG + chr3_3:63540400-63540419 None:intergenic 45.0%
!!! GTGGTGTGGTGTTGTTTTCT+GGG + chr3_3:63540444-63540463 None:intergenic 45.0%
!!! TGTGGTGTGGTGTTGTTTTC+TGG + chr3_3:63540445-63540464 None:intergenic 45.0%
CGAACTGCATTGAGCAAAAG+AGG + chr3_3:63540726-63540745 None:intergenic 45.0%
! CTTTTGCTCAATGCAGTTCG+GGG - chr3_3:63540726-63540745 Msa0463980:CDS 45.0%
ATGTCGAAAGACCTCCTGTT+TGG - chr3_3:63540754-63540773 Msa0463980:CDS 45.0%
TGTCTCATAAGCCAAACAGG+AGG + chr3_3:63540768-63540787 None:intergenic 45.0%
GCTTGTCTCATAAGCCAAAC+AGG + chr3_3:63540771-63540790 None:intergenic 45.0%
! GTTTGGCTTATGAGACAAGC+TGG - chr3_3:63540771-63540790 Msa0463980:CDS 45.0%
!! CGCAGATGATTTGGTAACTC+TGG + chr3_3:63541439-63541458 None:intergenic 45.0%
GCGAAAAATACCCGTCATTC+CGG - chr3_3:63541456-63541475 Msa0463980:intron 45.0%
CGAAAAATACCCGTCATTCC+GGG - chr3_3:63541457-63541476 Msa0463980:intron 45.0%
TCAGATCTTTCCCGGAATGA+CGG + chr3_3:63541470-63541489 None:intergenic 45.0%
GTTATATTACCCCATCAGGC+TGG + chr3_3:63541541-63541560 None:intergenic 45.0%
!! AGGCCAAGTTGATCAAGTGA+GGG - chr3_3:63541784-63541803 Msa0463980:intron 45.0%
ACTCCCTCACTTGATCAACT+TGG + chr3_3:63541790-63541809 None:intergenic 45.0%
! ACGTATGGAACTGATTCCTC+GGG + chr3_3:63541818-63541837 None:intergenic 45.0%
GAGGAATCAGTTCCATACGT+TGG - chr3_3:63541818-63541837 Msa0463980:intron 45.0%
GATAGTGCTTCACCAACGTA+TGG + chr3_3:63541833-63541852 None:intergenic 45.0%
CAGGGATACAAAGGTAGTGT+AGG + chr3_3:63541882-63541901 None:intergenic 45.0%
GCGGCTGAGATGATAAAACA+GGG + chr3_3:63541900-63541919 None:intergenic 45.0%
TGCGGCTGAGATGATAAAAC+AGG + chr3_3:63541901-63541920 None:intergenic 45.0%
! TTATCTTGATAGCCACTGGC+AGG + chr3_3:63542120-63542139 None:intergenic 45.0%
TTCAGTTCGGTTCTGCAGTT+CGG + chr3_3:63542256-63542275 None:intergenic 45.0%
TAGAAGTGATACGACCTTGC+AGG - chr3_3:63542935-63542954 Msa0463980:intron 45.0%
GTTTCATAGCCAATCCTGCA+AGG + chr3_3:63542952-63542971 None:intergenic 45.0%
! GTGAAGTGGTCTAAAGCATG+AGG - chr3_3:63543156-63543175 Msa0463980:intron 45.0%
GTCGGCAGTTCAGTTTAGTT+CGG - chr3_3:63543525-63543544 Msa0463980:intron 45.0%
! CAGTTCAGTTTAGTTCGGTG+TGG - chr3_3:63543530-63543549 Msa0463980:intron 45.0%
! CTGGTGGGCAGTTTAAACTT+CGG + chr3_3:63543569-63543588 None:intergenic 45.0%
!!! ATCTGCAGTCCTTGGTTTTG+TGG - chr3_3:63543728-63543747 Msa0463980:intron 45.0%
!!! TCTGCAGTCCTTGGTTTTGT+GGG - chr3_3:63543729-63543748 Msa0463980:intron 45.0%
ACTTACGAGATAGACGAAGG+TGG + chr3_3:63543857-63543876 None:intergenic 45.0%
CCTACTTACGAGATAGACGA+AGG + chr3_3:63543860-63543879 None:intergenic 45.0%
CCTTCGTCTATCTCGTAAGT+AGG - chr3_3:63543857-63543876 Msa0463980:intron 45.0%
GCTTGTCTCCATGTGAACTT+AGG - chr3_3:63543888-63543907 Msa0463980:CDS 45.0%
AGTAACGAGTGAAGGATCTG+TGG + chr3_3:63544458-63544477 None:intergenic 45.0%
TAGAGGATAAGAGGGAGTTC+TGG + chr3_3:63544650-63544669 None:intergenic 45.0%
CCACTTGCATAGAGGATAAG+AGG + chr3_3:63544659-63544678 None:intergenic 45.0%
CCTCTTATCCTCTATGCAAG+TGG - chr3_3:63544656-63544675 Msa0463980:CDS 45.0%
ATCCTCTATGCAAGTGGATC+AGG - chr3_3:63544662-63544681 Msa0463980:CDS 45.0%
CAAGCTTACAACATCCACAC+CGG + chr3_3:63544714-63544733 None:intergenic 45.0%
! CTTGGATTGGACGGTTGATA+TGG - chr3_3:63544730-63544749 Msa0463980:intron 45.0%
TTGATATGGCTGACGGTAGA+AGG - chr3_3:63544744-63544763 Msa0463980:intron 45.0%
GGACCAAATGTAGCTATCCA+AGG - chr3_3:63544773-63544792 Msa0463980:intron 45.0%
CACCAGGATCAACATTACCT+TGG + chr3_3:63544793-63544812 None:intergenic 45.0%
GTTGATCCTGGTGTTCTGTT+TGG - chr3_3:63544800-63544819 Msa0463980:intron 45.0%
TTCGATCCAAACAGAACACC+AGG + chr3_3:63544809-63544828 None:intergenic 45.0%
CGAAAGAGCTGATTACCGAT+AGG - chr3_3:63544825-63544844 Msa0463980:intron 45.0%
CACGGTATCGTGTATCCTAT+CGG + chr3_3:63544843-63544862 None:intergenic 45.0%
GATACACGATACCGTGAGAA+AGG - chr3_3:63544847-63544866 Msa0463980:intron 45.0%
GGGAAACATATCCTGAACCT+TGG - chr3_3:63544878-63544897 Msa0463980:intron 45.0%
CATATCCTGAACCTTGGTCA+CGG - chr3_3:63544884-63544903 Msa0463980:intron 45.0%
!!! TTTTTTTTTAAAATTTAATC+TGG - chr3_3:63540578-63540597 Msa0463980:CDS 5.0%
GGCGAAGTATGGGAAGGATA+AGG + chr3_3:63540275-63540294 None:intergenic 50.0%
TTACGGTACGGGCGAAGTAT+GGG + chr3_3:63540285-63540304 None:intergenic 50.0%
! ATGGGTAAAAGGGTGTGGTG+TGG + chr3_3:63540458-63540477 None:intergenic 50.0%
! ACAAGCTGGGAGGTACATGA+AGG - chr3_3:63540785-63540804 Msa0463980:CDS 50.0%
TACAAGCCGGAGGTTTAGTC+AGG + chr3_3:63540885-63540904 None:intergenic 50.0%
! GACTAAACCTCCGGCTTGTA+AGG - chr3_3:63540885-63540904 Msa0463980:CDS 50.0%
! TAAACCTCCGGCTTGTAAGG+TGG - chr3_3:63540888-63540907 Msa0463980:CDS 50.0%
! AAACCTCCGGCTTGTAAGGT+GGG - chr3_3:63540889-63540908 Msa0463980:CDS 50.0%
CAGATCTTTCCCGGAATGAC+GGG + chr3_3:63541469-63541488 None:intergenic 50.0%
TCAGGCTGGAAAACCTTCCA+CGG + chr3_3:63541527-63541546 None:intergenic 50.0%
! TGGAAGGTTTTCCAGCCTGA+TGG - chr3_3:63541527-63541546 Msa0463980:intron 50.0%
! GGAAGGTTTTCCAGCCTGAT+GGG - chr3_3:63541528-63541547 Msa0463980:intron 50.0%
! GAAGGTTTTCCAGCCTGATG+GGG - chr3_3:63541529-63541548 Msa0463980:intron 50.0%
CACTTGATCAACTTGGCCTG+CGG + chr3_3:63541783-63541802 None:intergenic 50.0%
!! CAGGCCAAGTTGATCAAGTG+AGG - chr3_3:63541783-63541802 Msa0463980:intron 50.0%
AGTGAGGGAGTTTATTCCCG+AGG - chr3_3:63541799-63541818 Msa0463980:intron 50.0%
GTTGAACAGTCCTAGTCTCC+AGG + chr3_3:63542234-63542253 None:intergenic 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG - chr3_3:63542717-63542736 Msa0463980:intron 50.0%
TGCTTGGTTCCCAAGCAACA+GGG - chr3_3:63542718-63542737 Msa0463980:intron 50.0%
! TTCCCAAGCAACAGGGGTAT+TGG - chr3_3:63542725-63542744 Msa0463980:intron 50.0%
! CACCAATACCCCTGTTGCTT+GGG + chr3_3:63542730-63542749 None:intergenic 50.0%
ACACCAATACCCCTGTTGCT+TGG + chr3_3:63542731-63542750 None:intergenic 50.0%
CTTAGATGGGCGATGCCTTA+AGG - chr3_3:63542782-63542801 Msa0463980:intron 50.0%
!! AGGCTCTAAGACCTCCAGAA+GGG + chr3_3:63542852-63542871 None:intergenic 50.0%
!! AAGGCTCTAAGACCTCCAGA+AGG + chr3_3:63542853-63542872 None:intergenic 50.0%
TGGAGGTCTTAGAGCCTTTC+TGG - chr3_3:63542855-63542874 Msa0463980:intron 50.0%
AGGTCTTAGAGCCTTTCTGG+AGG - chr3_3:63542858-63542877 Msa0463980:intron 50.0%
GGTCTTAGAGCCTTTCTGGA+GGG - chr3_3:63542859-63542878 Msa0463980:intron 50.0%
TGGAGGGCTTCTAAGCCTTT+AGG - chr3_3:63542875-63542894 Msa0463980:intron 50.0%
GTGATACGACCTTGCAGGAT+TGG - chr3_3:63542940-63542959 Msa0463980:intron 50.0%
GATGTCGGTGCACAGTTATG+TGG - chr3_3:63543392-63543411 Msa0463980:intron 50.0%
GGGTTTGAACCAGTAGAGCA+TGG - chr3_3:63543431-63543450 Msa0463980:intron 50.0%
! TTTGGTGCACCATGCTCTAC+TGG + chr3_3:63543443-63543462 None:intergenic 50.0%
ACATACGACGCCAGGGTAAA+CGG + chr3_3:63543759-63543778 None:intergenic 50.0%
TTCAACCACATACGACGCCA+GGG + chr3_3:63543766-63543785 None:intergenic 50.0%
!! GGATAAGAGGGAGTTCTGGA+TGG + chr3_3:63544646-63544665 None:intergenic 50.0%
CTCCTGATCCACTTGCATAG+AGG + chr3_3:63544667-63544686 None:intergenic 50.0%
CTCTATGCAAGTGGATCAGG+AGG - chr3_3:63544665-63544684 Msa0463980:CDS 50.0%
!! GAGAATAGCATTGACCGGTG+TGG - chr3_3:63544697-63544716 Msa0463980:CDS 50.0%
CGGTGTGGATGTTGTAAGCT+TGG - chr3_3:63544712-63544731 Msa0463980:CDS 50.0%
! TGGACGGTTGATATGGCTGA+CGG - chr3_3:63544737-63544756 Msa0463980:intron 50.0%
GCTGACGGTAGAAGGAGATT+GGG - chr3_3:63544752-63544771 Msa0463980:intron 50.0%
CATCGTAGTAGGTACTCCTG+AGG - chr3_3:63544907-63544926 Msa0463980:intron 50.0%
GTTACGGTACGGGCGAAGTA+TGG + chr3_3:63540286-63540305 None:intergenic 55.0%
GGCTTATGAGACAAGCTGGG+AGG - chr3_3:63540775-63540794 Msa0463980:CDS 55.0%
GTTGGGCCTGACTAAACCTC+CGG - chr3_3:63540876-63540895 Msa0463980:CDS 55.0%
! AACCTCCGGCTTGTAAGGTG+GGG - chr3_3:63540890-63540909 Msa0463980:CDS 55.0%
TTTGACCCAGTTCACTCCGC+AGG - chr3_3:63541764-63541783 Msa0463980:intron 55.0%
AACACTGTCTGTCCTGCCAG+TGG - chr3_3:63542105-63542124 Msa0463980:intron 55.0%
GACAGTGGGAGGACGAAAGA+AGG - chr3_3:63542467-63542486 Msa0463980:intron 55.0%
GCCTCTATGGGCTTGGGTTT+CGG - chr3_3:63542694-63542713 Msa0463980:intron 55.0%
ACCGAAACCCAAGCCCATAG+AGG + chr3_3:63542698-63542717 None:intergenic 55.0%
GCTTGGTTCCCAAGCAACAG+GGG - chr3_3:63542719-63542738 Msa0463980:intron 55.0%
TAAGACCTCCAGAAGGGCTC+AGG + chr3_3:63542846-63542865 None:intergenic 55.0%
GGCTTAGAAGCCCTCCAGAA+AGG + chr3_3:63542872-63542891 None:intergenic 55.0%
! ACGGAGCACCCACAAAACCA+AGG + chr3_3:63543740-63543759 None:intergenic 55.0%
GTTTACCCTGGCGTCGTATG+TGG - chr3_3:63543758-63543777 Msa0463980:intron 55.0%
CTTCAACCACATACGACGCC+AGG + chr3_3:63543767-63543786 None:intergenic 55.0%
CTGGCGTCGTATGTGGTTGA+AGG - chr3_3:63543765-63543784 Msa0463980:intron 55.0%
GCGTCGTATGTGGTTGAAGG+CGG - chr3_3:63543768-63543787 Msa0463980:intron 55.0%
CTTGCGCTCCATTGTCAGCT+TGG + chr3_3:63544520-63544539 None:intergenic 55.0%
GGCAACAGAGCTTAGTCCAG+TGG - chr3_3:63544562-63544581 Msa0463980:intron 55.0%
GGCTGACGGTAGAAGGAGAT+TGG - chr3_3:63544751-63544770 Msa0463980:intron 55.0%
CACGATACCGTGAGAAAGGC+TGG - chr3_3:63544851-63544870 Msa0463980:intron 55.0%
ACCGTGAGAAAGGCTGGTAG+AGG - chr3_3:63544857-63544876 Msa0463980:intron 55.0%
CCCTCTACCAGCCTTTCTCA+CGG + chr3_3:63544861-63544880 None:intergenic 55.0%
CCGTGAGAAAGGCTGGTAGA+GGG - chr3_3:63544858-63544877 Msa0463980:intron 55.0%
CTACTACGATGCCGTGACCA+AGG + chr3_3:63544898-63544917 None:intergenic 55.0%
CTTGGTCACGGCATCGTAGT+AGG - chr3_3:63544896-63544915 Msa0463980:intron 55.0%
GGTACGGGCGAAGTATGGGA+AGG + chr3_3:63540281-63540300 None:intergenic 60.0%
! TCCGGCTTGTAAGGTGGGGA+CGG - chr3_3:63540894-63540913 Msa0463980:CDS 60.0%
ACCGTCCCCACCTTACAAGC+CGG + chr3_3:63540898-63540917 None:intergenic 60.0%
CTTGGCCTGCGGAGTGAACT+GGG + chr3_3:63541772-63541791 None:intergenic 60.0%
ACTTGGCCTGCGGAGTGAAC+TGG + chr3_3:63541773-63541792 None:intergenic 60.0%
GGGCTTGGGTTTCGGTTGCT+TGG - chr3_3:63542702-63542721 Msa0463980:intron 60.0%
CAGAAGGGCTCCTGAGACTC+CGG + chr3_3:63542816-63542835 None:intergenic 60.0%
AGTCTCAGGAGCCCTTCTGG+AGG - chr3_3:63542817-63542836 Msa0463980:intron 60.0%
GTCTCAGGAGCCCTTCTGGA+GGG - chr3_3:63542818-63542837 Msa0463980:intron 60.0%
TGTGGGTGCTCCGTTTACCC+TGG - chr3_3:63543746-63543765 Msa0463980:intron 60.0%
CGATGCCGTGACCAAGGTTC+AGG + chr3_3:63544892-63544911 None:intergenic 60.0%
GTCCCCACCTTACAAGCCGG+AGG + chr3_3:63540895-63540914 None:intergenic 65.0%
ATGCCTTAAGGCGAGCGCGC+CGG - chr3_3:63542794-63542813 Msa0463980:intron 65.0%
CGGAGTCTCAGGAGCCCTTC+TGG - chr3_3:63542814-63542833 Msa0463980:intron 65.0%
ACTCCGGCGCGCTCGCCTTA+AGG + chr3_3:63542800-63542819 None:intergenic 70.0%
GGCTCAGGCGCCCTCCAGAA+GGG + chr3_3:63542831-63542850 None:intergenic 70.0%
GGGCTCAGGCGCCCTCCAGA+AGG + chr3_3:63542832-63542851 None:intergenic 75.0%
!! GGAGGGCGCCTGAGCCCTTC+TGG - chr3_3:63542835-63542854 Msa0463980:intron 75.0%
GGGCGCCTGAGCCCTTCTGG+AGG - chr3_3:63542838-63542857 Msa0463980:intron 75.0%
! GGCGAGCGCGCCGGAGTCTC+AGG - chr3_3:63542803-63542822 Msa0463980:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63540248 63545176 63540248 ID=Msa0463980;Name=Msa0463980
chr3_3 mRNA 63540248 63545176 63540248 ID=Msa0463980-mRNA-1;Parent=Msa0463980;Name=Msa0463980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=151|1|1|1|1|1|6|200|389
chr3_3 exon 63540248 63540963 63540248 ID=Msa0463980-mRNA-1:exon:13853;Parent=Msa0463980-mRNA-1
chr3_3 exon 63541582 63541707 63541582 ID=Msa0463980-mRNA-1:exon:13852;Parent=Msa0463980-mRNA-1
chr3_3 exon 63543556 63543744 63543556 ID=Msa0463980-mRNA-1:exon:13851;Parent=Msa0463980-mRNA-1
chr3_3 exon 63543874 63543984 63543874 ID=Msa0463980-mRNA-1:exon:13850;Parent=Msa0463980-mRNA-1
chr3_3 exon 63544618 63544739 63544618 ID=Msa0463980-mRNA-1:exon:13849;Parent=Msa0463980-mRNA-1
chr3_3 exon 63544920 63545176 63544920 ID=Msa0463980-mRNA-1:exon:13848;Parent=Msa0463980-mRNA-1
chr3_3 five_prime_UTR 63545026 63545176 63545026 ID=Msa0463980-mRNA-1:five_prime_utr;Parent=Msa0463980-mRNA-1
chr3_3 CDS 63544920 63545025 63544920 ID=Msa0463980-mRNA-1:cds;Parent=Msa0463980-mRNA-1
chr3_3 CDS 63544618 63544739 63544618 ID=Msa0463980-mRNA-1:cds;Parent=Msa0463980-mRNA-1
chr3_3 CDS 63543874 63543984 63543874 ID=Msa0463980-mRNA-1:cds;Parent=Msa0463980-mRNA-1
chr3_3 CDS 63543556 63543744 63543556 ID=Msa0463980-mRNA-1:cds;Parent=Msa0463980-mRNA-1
chr3_3 CDS 63541582 63541707 63541582 ID=Msa0463980-mRNA-1:cds;Parent=Msa0463980-mRNA-1
chr3_3 CDS 63540448 63540963 63540448 ID=Msa0463980-mRNA-1:cds;Parent=Msa0463980-mRNA-1
chr3_3 three_prime_UTR 63540248 63540447 63540248 ID=Msa0463980-mRNA-1:three_prime_utr;Parent=Msa0463980-mRNA-1
Gene Sequence

>Msa0463980

ATGTTTTGCGGTGTAGTTAGCACTTCTTTCACTTCCATTTTACCCAGAAAACAACACCACACCACACCCTTTTACCCATTCAAATCCATTCAATGTTCTCTTCCAGGAGCTGTTGCTGAACCTAAAACAACTAATGCCACAGAACCTCTTTTGCTCAATGCAGTTCGGGGATTAGATGTCGAAAGACCTCCTGTTTGGCTTATGAGACAAGCTGGGAGGTACATGAAGAGTTACCAAATCATCTGCGAAAAATACCCGTCATTCCGGGAAAGATCTGAAAACGTTGATCTTGTGGTTGAAATTTCATTGCAACCGTGGAAGGTTTTCCAGCCTGATGGGGTGATATTATTCTCAGATATTCTTACACCACTTTCTGGAATGAATATTCCATTTGACATTGTAAAAGGCAAGGGTCCCGTCATATTTGACCCAGTTCACTCCGCAGGCCAAGTTGATCAAGTGAGGGAGTTTATTCCCGAGGAATCAGTTCCATACGTTGGTGAAGCACTATCAATTTTGCGCAAAGAGGTAGATAATAAATCTGCAGTCCTTGGTTTTGTGGGTGCTCCGTTTACCCTGGCGTCGTATGTGGTTGAAGGCGGTTCATCAAAACATTTCTCTAAAATAAAGAGATTGGCATTCTCTGAACCAAAGATCCTTCACTCGTTACTGCAAAAGTTTACAACATCAATGGCAAGATACATACAATACCAAGCTGACAATGGAGCGCAAGCTGTACAGATATTCGATTCATGGGCAACAGAGCTTAGTCCAGTGGATTTTGAACGATTCAGTTTGCCATACTTGAAGCAAATAATTGACACTGTAAAGAAAAGCCATCCAGAACTCCCTCTTATCCTCTATGCAAGTGGATCAGGAGGCTTACTTGAGAGAATAGCATTGACCGGTGTGGATGTTGTAAGCTTGGATTGGACGGTTGATATGGCTGACGGTAGAAGGAGATTGGGACCAAATGTAGCTATCCAAGGTAATGTTGATCCTGGTGTTCTGTTTGGATCGAAAGAGCTGATTACCGATAGGATACACGATACCGTGAGAAAGGCTGGTAGAGGGAAACATATCCTGAACCTTGGTCACGGCATCGTAGTAGGTACTCCTGAGGAGAATGTAGCACATTTTTTTGAGGTTGCCAAAGGAATCAAATACTAA

Protein sequence

>Msa0463980

MFCGVVSTSFTSILPRKQHHTTPFYPFKSIQCSLPGAVAEPKTTNATEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEVDNKSAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFERFSLPYLKQIIDTVKKSHPELPLILYASGSGGLLERIALTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKELITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAKGIKY*