AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266100 MtrunA17_Chr2g0331271 96.859 191 6 0 1 191 1 191 7.32e-139 385
Msa0266100 MtrunA17_Chr1g0148731 53.846 104 46 2 72 174 60 162 1.40e-24 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266100 AT3G16250.1 62.567 187 57 5 12 186 14 199 2.36e-77 230
Msa0266100 AT4G32590.1 53.846 104 46 2 72 174 70 172 1.78e-25 97.4
Msa0266100 AT4G32590.3 53.763 93 41 2 72 163 70 161 3.96e-19 80.9

Find 74 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGTACATTATTCTTTA+TGG 0.068016 2_2:-66536877 Msa0266100:five_prime_UTR
CATTTCCTCATGTGCTATTT+TGG 0.116905 2_2:+66534743 None:intergenic
ACTCCTCTAAAACTCTAAAA+TGG 0.153224 2_2:+66534443 None:intergenic
AGTGCCAACTGCTCTAATTT+TGG 0.198239 2_2:+66536601 None:intergenic
CATGCTAATCTCCAATTCTT+TGG 0.246574 2_2:+66535552 None:intergenic
GTCAGAAAGCAACTGATATT+TGG 0.264267 2_2:-66534612 Msa0266100:three_prime_UTR
GAGAGAGGTGCGAATGCATT+AGG 0.300487 2_2:+66536674 None:intergenic
TGCACGTGGCATAACATAAT+TGG 0.309607 2_2:-66534722 Msa0266100:three_prime_UTR
GACAAATGCAAAACCTATAG+AGG 0.334673 2_2:+66536529 None:intergenic
CCTTGTCCACTACAAGAAAA+TGG 0.347151 2_2:-66534958 Msa0266100:three_prime_UTR
TTATCTCATATAATTTGAAT+TGG 0.367948 2_2:+66536848 None:intergenic
GATTCTAACATTGAACTCTA+TGG 0.373731 2_2:-66536278 Msa0266100:CDS
AACTAGTGTTATGTTGTTGA+AGG 0.378823 2_2:+66536745 None:intergenic
TAGGGGTTAGTTTGAGTTGG+AGG 0.393377 2_2:+66536693 None:intergenic
TCTAATGACCCTCCCTCTAT+AGG 0.394740 2_2:-66536542 Msa0266100:CDS
AATCTTGTGCTTCTTGATCC+TGG 0.407919 2_2:-66535013 Msa0266100:three_prime_UTR
AGAGAGGTGCGAATGCATTA+GGG 0.412911 2_2:+66536675 None:intergenic
CTTGTAAAGAGTGTTGTGTT+TGG 0.421734 2_2:+66536626 None:intergenic
CATTCATGTCCTTTCCACTC+TGG 0.430702 2_2:+66535346 None:intergenic
TGCACATCTGGTGTTCCATC+TGG 0.437999 2_2:+66536347 None:intergenic
CATTAGGGGTTAGTTTGAGT+TGG 0.450485 2_2:+66536690 None:intergenic
TATTGTTATTGTAAAATAAG+TGG 0.451355 2_2:-66534469 Msa0266100:three_prime_UTR
ATTTGCTATTAGGTTCTTGA+AGG 0.451453 2_2:-66535788 Msa0266100:intron
CTCCTCTAAAACTCTAAAAT+GGG 0.454937 2_2:+66534444 None:intergenic
AGGATTCCAACCTTGTACAT+TGG 0.463397 2_2:-66534790 Msa0266100:three_prime_UTR
GATTCTAAGAGCATAATTAT+CGG 0.467437 2_2:-66534674 Msa0266100:three_prime_UTR
GCTGTACGATAATGCACATC+TGG 0.480063 2_2:+66536335 None:intergenic
GTGGGTGAAGCAGATTCTAC+AGG 0.486617 2_2:-66535519 Msa0266100:CDS
TTATTTCCAATGTACAAGGT+TGG 0.502984 2_2:+66534784 None:intergenic
CTATTAGGTTCTTGAAGGCA+AGG 0.503895 2_2:-66535783 Msa0266100:intron
GAAGCTTAGGAACATAATGT+TGG 0.511451 2_2:-66536300 Msa0266100:CDS
CTTGTGGTGGACAGAAGCTT+AGG 0.512735 2_2:-66536313 Msa0266100:CDS
ACATGAATGGAAATATGAAA+AGG 0.521149 2_2:-66535332 Msa0266100:CDS
CAGAGTGGAAAGGACATGAA+TGG 0.529406 2_2:-66535345 Msa0266100:CDS
ATAAATATTGATATCCATGT+TGG 0.529519 2_2:+66536924 None:intergenic
TGGCACTGTCCCTGAAAAGA+AGG 0.529530 2_2:-66536585 Msa0266100:CDS
AGAACCAAAATTAGAGCAGT+TGG 0.532011 2_2:-66536605 Msa0266100:CDS
GTACTTATTTCCAATGTACA+AGG 0.532016 2_2:+66534780 None:intergenic
TCTTGATCCTGGTGATAGCT+AGG 0.533485 2_2:-66535002 Msa0266100:three_prime_UTR
ATTGTTATTGTAAAATAAGT+GGG 0.535577 2_2:-66534468 Msa0266100:three_prime_UTR
TTATGTGAGGAAGAAGAGAG+AGG 0.539445 2_2:+66536659 None:intergenic
TTTCTGGTAGCTCAGTTCCA+TGG 0.547316 2_2:+66534862 None:intergenic
TGGAACTTGTGCTACATGTA+TGG 0.561485 2_2:-66536140 Msa0266100:CDS
TAGTCTGTGTTGCTACCAGA+TGG 0.569681 2_2:-66536362 Msa0266100:CDS
TGGCATAACATAATTGGTTG+AGG 0.572563 2_2:-66534716 Msa0266100:three_prime_UTR
TGGGTGAAGCAGATTCTACA+GGG 0.575014 2_2:-66535518 Msa0266100:CDS
ATGATCCAAAATAGCACATG+AGG 0.580565 2_2:-66534748 Msa0266100:three_prime_UTR
TTATGTCTTTATCTCCAACA+TGG 0.586390 2_2:-66536938 Msa0266100:five_prime_UTR
AGTAGTAAAACTTAACAAAG+TGG 0.587524 2_2:-66534579 Msa0266100:three_prime_UTR
GATCCTGGTGATAGCTAGGA+CGG 0.588930 2_2:-66534998 Msa0266100:three_prime_UTR
TCTTTCTCTTTGTCAGTGCG+AGG 0.589508 2_2:+66535749 None:intergenic
ATGGTCGAGTTTGAATCAAG+TGG 0.592731 2_2:+66534881 None:intergenic
TTAGCATGTCAAACAACTGT+GGG 0.604116 2_2:-66535537 Msa0266100:CDS
TACATTGGAAATAAGTACAA+AGG 0.610804 2_2:-66534775 Msa0266100:three_prime_UTR
TTGTGCTACATGTATGGTAG+AGG 0.614537 2_2:-66536134 Msa0266100:intron
AAACCGTCCTAGCTATCACC+AGG 0.614689 2_2:+66534995 None:intergenic
TGGTTGAGGTAAATGACACT+TGG 0.617626 2_2:-66534702 Msa0266100:three_prime_UTR
ACTTGATTCAAACTCGACCA+TGG 0.622490 2_2:-66534879 Msa0266100:three_prime_UTR
ACAAATGCAAAACCTATAGA+GGG 0.622761 2_2:+66536530 None:intergenic
GACTCAGCAGACTCTTTGTG+AGG 0.642468 2_2:-66535301 Msa0266100:exon
GTGCATTATCGTACAGCTTG+TGG 0.644594 2_2:-66536329 Msa0266100:CDS
CAACAATTACCAGAGTGGAA+AGG 0.648231 2_2:-66535355 Msa0266100:CDS
AAATGCAACGATTGATCACA+AGG 0.650416 2_2:+66534816 None:intergenic
TGAAGCAGATTCTACAGGGG+TGG 0.651914 2_2:-66535514 Msa0266100:intron
ATGCAAAACCTATAGAGGGA+GGG 0.653145 2_2:+66536534 None:intergenic
AATGCAAAACCTATAGAGGG+AGG 0.655010 2_2:+66536533 None:intergenic
ATTAGCATGTCAAACAACTG+TGG 0.658456 2_2:-66535538 Msa0266100:CDS
TGATTCAACAATTACCAGAG+TGG 0.670303 2_2:-66535360 Msa0266100:CDS
GAGAGGTGCGAATGCATTAG+GGG 0.671256 2_2:+66536676 None:intergenic
CATTATCGTACAGCTTGTGG+TGG 0.680953 2_2:-66536326 Msa0266100:CDS
AGGGTCATTAGAGTCACTAG+TGG 0.691443 2_2:+66536553 None:intergenic
ATTATCGGTGCAAAAGCACG+TGG 0.697957 2_2:-66534659 Msa0266100:three_prime_UTR
AGCACATGAGGAAATGCACG+TGG 0.720914 2_2:-66534736 Msa0266100:three_prime_UTR
GGGTGAAGCAGATTCTACAG+GGG 0.770570 2_2:-66535517 Msa0266100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_2:66535168-66535187 Msa0266100:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_2:66535593-66535612 Msa0266100:intron 10.0%
!! TTTATGTACATTATTCTTTA+TGG - chr2_2:66534514-66534533 Msa0266100:three_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_2:66534546-66534565 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr2_2:66535399-66535418 Msa0266100:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr2_2:66535400-66535419 Msa0266100:intron 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_2:66535934-66535953 Msa0266100:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_2:66536851-66536870 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_2:66536852-66536871 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_2:66536878-66536897 Msa0266100:five_prime_UTR 15.0%
!!! TATTGTTATTGTAAAATAAG+TGG - chr2_2:66536922-66536941 Msa0266100:five_prime_UTR 15.0%
!!! ATTGTTATTGTAAAATAAGT+GGG - chr2_2:66536923-66536942 Msa0266100:five_prime_UTR 15.0%
!! ATAAATATTGATATCCATGT+TGG + chr2_2:66534470-66534489 None:intergenic 20.0%
!! TAATTCTACTTATATCTAGT+TGG - chr2_2:66534955-66534974 Msa0266100:three_prime_UTR 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG - chr2_2:66535004-66535023 Msa0266100:three_prime_UTR 20.0%
!!! CAAAAAATGCACATTTTATT+GGG - chr2_2:66535311-66535330 Msa0266100:CDS 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr2_2:66535401-66535420 Msa0266100:intron 20.0%
!! TATTTAGTGTTATAGTGTAT+TGG - chr2_2:66535464-66535483 Msa0266100:intron 20.0%
!! ATTTAGTGTTATAGTGTATT+GGG - chr2_2:66535465-66535484 Msa0266100:intron 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG - chr2_2:66535511-66535530 Msa0266100:intron 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG - chr2_2:66535512-66535531 Msa0266100:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2_2:66535534-66535553 Msa0266100:CDS 20.0%
!!! TTTTATAGAAACCAAAGAAT+TGG - chr2_2:66535828-66535847 Msa0266100:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_2:66535899-66535918 Msa0266100:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_2:66535979-66535998 Msa0266100:intron 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_2:66536481-66536500 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_2:66536482-66536501 None:intergenic 20.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_2:66535140-66535159 None:intergenic 25.0%
!!! ATTTTGTTGTTGATTTTTCC+AGG - chr2_2:66535200-66535219 Msa0266100:three_prime_UTR 25.0%
!!! TTTTGTTGTTGATTTTTCCA+GGG - chr2_2:66535201-66535220 Msa0266100:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_2:66535221-66535240 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_2:66535222-66535241 Msa0266100:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_2:66535225-66535244 Msa0266100:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_2:66535226-66535245 Msa0266100:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_2:66535227-66535246 Msa0266100:three_prime_UTR 25.0%
!! GCAAAAAATGCACATTTTAT+TGG - chr2_2:66535310-66535329 Msa0266100:CDS 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr2_2:66535423-66535442 Msa0266100:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr2_2:66535533-66535552 Msa0266100:CDS 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_2:66535655-66535674 Msa0266100:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_2:66535656-66535675 Msa0266100:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_2:66535898-66535917 Msa0266100:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_2:66536059-66536078 Msa0266100:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_2:66536282-66536301 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_2:66536480-66536499 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_2:66536548-66536567 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_2:66536616-66536635 Msa0266100:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_2:66536717-66536736 Msa0266100:exon 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_2:66536812-66536831 Msa0266100:five_prime_UTR 25.0%
TTATGTCTTTATCTCCAACA+TGG - chr2_2:66534453-66534472 Msa0266100:three_prime_UTR 30.0%
! TGAAGTGTGTTTTTCATTTG+TGG + chr2_2:66534602-66534621 None:intergenic 30.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_2:66534649-66534668 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_2:66534748-66534767 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_2:66534864-66534883 None:intergenic 30.0%
GATTCTAACATTGAACTCTA+TGG - chr2_2:66535113-66535132 Msa0266100:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_2:66535228-66535247 Msa0266100:three_prime_UTR 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr2_2:66535408-66535427 Msa0266100:intron 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_2:66535603-66535622 Msa0266100:intron 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_2:66536005-66536024 Msa0266100:intron 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_2:66536442-66536461 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_2:66536470-66536489 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_2:66536610-66536629 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_2:66536614-66536633 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_2:66536767-66536786 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_2:66536848-66536867 None:intergenic 30.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_2:66534768-66534787 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+TGG - chr2_2:66534786-66534805 Msa0266100:three_prime_UTR 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG + chr2_2:66534818-66534837 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_2:66534865-66534884 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_2:66535091-66535110 Msa0266100:three_prime_UTR 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr2_2:66535364-66535383 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr2_2:66535365-66535384 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr2_2:66535378-66535397 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr2_2:66535547-66535566 Msa0266100:CDS 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_2:66535771-66535790 Msa0266100:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_2:66535842-66535861 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_2:66535853-66535872 Msa0266100:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_2:66535854-66535873 Msa0266100:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_2:66536031-66536050 Msa0266100:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_2:66536578-66536597 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_2:66536581-66536600 Msa0266100:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_2:66536643-66536662 Msa0266100:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_2:66536651-66536670 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_2:66536675-66536694 Msa0266100:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_2:66536768-66536787 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_2:66536779-66536798 Msa0266100:five_prime_UTR 35.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_2:66534704-66534723 None:intergenic 40.0%
TTATGTGAGGAAGAAGAGAG+AGG + chr2_2:66534735-66534754 None:intergenic 40.0%
! AGTGCCAACTGCTCTAATTT+TGG + chr2_2:66534793-66534812 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG + chr2_2:66534819-66534838 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_2:66534860-66534879 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_2:66534861-66534880 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_2:66535251-66535270 Msa0266100:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_2:66535257-66535276 Msa0266100:three_prime_UTR 40.0%
CCGGTATAATTGACCTACTT+TGG - chr2_2:66535362-66535381 Msa0266100:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr2_2:66535548-66535567 Msa0266100:CDS 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_2:66535608-66535627 Msa0266100:intron 40.0%
GAATCACAACCTACATCACA+TGG + chr2_2:66536017-66536036 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_2:66536036-66536055 Msa0266100:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_2:66536378-66536397 Msa0266100:intron 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_2:66536402-66536421 Msa0266100:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_2:66536436-66536455 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_2:66536433-66536452 Msa0266100:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_2:66536513-66536532 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_2:66536512-66536531 Msa0266100:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_2:66536601-66536620 Msa0266100:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_2:66536669-66536688 Msa0266100:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_2:66536689-66536708 Msa0266100:CDS 40.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_2:66534701-66534720 None:intergenic 45.0%
! AGAGAGGTGCGAATGCATTA+GGG + chr2_2:66534719-66534738 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_2:66534841-66534860 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_2:66534849-66534868 Msa0266100:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_2:66535029-66535048 Msa0266100:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_2:66535059-66535078 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_2:66535062-66535081 Msa0266100:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_2:66535065-66535084 Msa0266100:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_2:66535231-66535250 Msa0266100:three_prime_UTR 45.0%
GTTATATACTACCTCCGTCC+CGG - chr2_2:66535343-66535362 Msa0266100:CDS 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr2_2:66535360-66535379 None:intergenic 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_2:66535645-66535664 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_2:66535873-66535892 Msa0266100:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_2:66536048-66536067 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_2:66536046-66536065 Msa0266100:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_2:66536389-66536408 Msa0266100:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_2:66536532-66536551 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_2:66536732-66536751 Msa0266100:five_prime_UTR 45.0%
! GAGAGGTGCGAATGCATTAG+GGG + chr2_2:66534718-66534737 None:intergenic 50.0%
! GAGAGAGGTGCGAATGCATT+AGG + chr2_2:66534720-66534739 None:intergenic 50.0%
TGGCACTGTCCCTGAAAAGA+AGG - chr2_2:66534806-66534825 Msa0266100:three_prime_UTR 50.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_2:66535047-66535066 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_2:66535078-66535097 Msa0266100:three_prime_UTR 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr2_2:66535552-66535571 Msa0266100:CDS 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_2:66535872-66535891 Msa0266100:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_2:66535874-66535893 Msa0266100:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_2:66535877-66535896 Msa0266100:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_2:66536090-66536109 Msa0266100:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_2:66536393-66536412 Msa0266100:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_2:66536399-66536418 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_2:66536655-66536674 Msa0266100:CDS 50.0%
GGTCAATTATACCGGGACGG+AGG + chr2_2:66535357-66535376 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr2_2:66535556-66535575 Msa0266100:CDS 55.0%
ATAAGTACCTCCCTCCGTCC+CGG + chr2_2:66535569-66535588 None:intergenic 55.0%
GGTCAGTTATTCCGGGACGG+AGG - chr2_2:66535555-66535574 Msa0266100:CDS 60.0%
AGTTATTCCGGGACGGAGGG+AGG - chr2_2:66535559-66535578 Msa0266100:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66534451 66536962 66534451 ID=Msa0266100;Name=Msa0266100
chr2_2 mRNA 66534451 66536962 66534451 ID=Msa0266100-mRNA-1;Parent=Msa0266100;Name=Msa0266100-mRNA-1;_AED=0.07;_eAED=0.07;_QI=239|1|1|1|1|1|6|852|191
chr2_2 exon 66534451 66535386 66534451 ID=Msa0266100-mRNA-1:exon:21161;Parent=Msa0266100-mRNA-1
chr2_2 exon 66535515 66535577 66535515 ID=Msa0266100-mRNA-1:exon:21160;Parent=Msa0266100-mRNA-1
chr2_2 exon 66535736 66535798 66535736 ID=Msa0266100-mRNA-1:exon:21159;Parent=Msa0266100-mRNA-1
chr2_2 exon 66536135 66536191 66536135 ID=Msa0266100-mRNA-1:exon:21158;Parent=Msa0266100-mRNA-1
chr2_2 exon 66536271 66536381 66536271 ID=Msa0266100-mRNA-1:exon:21157;Parent=Msa0266100-mRNA-1
chr2_2 exon 66536526 66536962 66536526 ID=Msa0266100-mRNA-1:exon:21156;Parent=Msa0266100-mRNA-1
chr2_2 five_prime_UTR 66536724 66536962 66536724 ID=Msa0266100-mRNA-1:five_prime_utr;Parent=Msa0266100-mRNA-1
chr2_2 CDS 66536526 66536723 66536526 ID=Msa0266100-mRNA-1:cds;Parent=Msa0266100-mRNA-1
chr2_2 CDS 66536271 66536381 66536271 ID=Msa0266100-mRNA-1:cds;Parent=Msa0266100-mRNA-1
chr2_2 CDS 66536135 66536191 66536135 ID=Msa0266100-mRNA-1:cds;Parent=Msa0266100-mRNA-1
chr2_2 CDS 66535736 66535798 66535736 ID=Msa0266100-mRNA-1:cds;Parent=Msa0266100-mRNA-1
chr2_2 CDS 66535515 66535577 66535515 ID=Msa0266100-mRNA-1:cds;Parent=Msa0266100-mRNA-1
chr2_2 CDS 66535303 66535386 66535303 ID=Msa0266100-mRNA-1:cds;Parent=Msa0266100-mRNA-1
chr2_2 three_prime_UTR 66534451 66535302 66534451 ID=Msa0266100-mRNA-1:three_prime_utr;Parent=Msa0266100-mRNA-1
Gene Sequence

>Msa0266100

ATGTCACTCCTCCAACTCAAACTAACCCCTAATGCATTCGCACCTCTCTCTTCTTCCTCACATAAAAAATTCAGACCAAACACAACACTCTTTACAAGAACCAAAATTAGAGCAGTTGGCACTGTCCCTGAAAAGAAGGATTCAGAGACCACTAGTGACTCTAATGACCCTCCCTCTATAGGTTTTGCATTTGTCAGTTCTGTGTTGCTACCAGATGGAACACCAGATGTGCATTATCGTACAGCTTGTGGTGGACAGAAGCTTAGGAACATAATGTTGGATTCTAACATTGAACTCTATGGACCTTATGGTAGAATTTTGTTAAATTGTGGAGGGGGTGGAACTTGTGCTACATGTATGGTAGAGGTTCTTGAAGGCAAGGAGCTTCTGAGTCCTCGCACTGACAAAGAGAAAGAAAAACTTAAGAGGAAACCAAAGAATTGGAGATTAGCATGTCAAACAACTGTGGGTGAAGCAGATTCTACAGGGGTGGTTGTGATTCAACAATTACCAGAGTGGAAAGGACATGAATGGAAATATGAAAAGGATGATGATGACTCAGCAGACTCTTTGTGA

Protein sequence

>Msa0266100

MSLLQLKLTPNAFAPLSSSSHKKFRPNTTLFTRTKIRAVGTVPEKKDSETTSDSNDPPSIGFAFVSSVLLPDGTPDVHYRTACGGQKLRNIMLDSNIELYGPYGRILLNCGGGGTCATCMVEVLEGKELLSPRTDKEKEKLKRKPKNWRLACQTTVGEADSTGVVVIQQLPEWKGHEWKYEKDDDDSADSL*